BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030020
(184 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255539324|ref|XP_002510727.1| conserved hypothetical protein [Ricinus communis]
gi|223551428|gb|EEF52914.1| conserved hypothetical protein [Ricinus communis]
Length = 264
Score = 311 bits (797), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 146/185 (78%), Positives = 167/185 (90%), Gaps = 1/185 (0%)
Query: 1 MFQLAFT-ACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAF 59
+F +AFT +FP ++S A A +D R+YTD+ NKF+ISIPQDW++GAGEPNGFKS+TAF
Sbjct: 80 LFSVAFTTGFTFPGLISNAFAEIDDFRLYTDDANKFQISIPQDWRVGAGEPNGFKSVTAF 139
Query: 60 YPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKA 119
YP+EAS SSVSVVITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW+RPPGVAAKLIDCKA
Sbjct: 140 YPEEASGSSVSVVITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQRPPGVAAKLIDCKA 199
Query: 120 SKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVA 179
+KG YYIEYTLQNPGE RKHLFSA+GMA NGWYNRLYTVTGQFVEEESE YGS ++K V+
Sbjct: 200 TKGIYYIEYTLQNPGEGRKHLFSALGMAFNGWYNRLYTVTGQFVEEESENYGSKVQKVVS 259
Query: 180 SFRFI 184
SF+FI
Sbjct: 260 SFKFI 264
>gi|449522159|ref|XP_004168095.1| PREDICTED: psbP domain-containing protein 3, chloroplastic-like
[Cucumis sativus]
Length = 188
Score = 299 bits (766), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 141/188 (75%), Positives = 160/188 (85%), Gaps = 4/188 (2%)
Query: 1 MFQLAFTACSFPAIVSYALAAN----EDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSI 56
M + FTA SF +VS ALA + ED R YTDE NKF + IPQDWQ+G GEPNGFKS+
Sbjct: 1 MLGIGFTAFSFQEVVSNALAESVVVAEDYRTYTDEANKFSLVIPQDWQVGNGEPNGFKSV 60
Query: 57 TAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLID 116
TAF+PQE S+S+VSVVI+GLGPD+TRMESFGKVE FADTLVSGLDRSW+RPPGVAAKLID
Sbjct: 61 TAFFPQETSTSNVSVVISGLGPDYTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLID 120
Query: 117 CKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEK 176
C++SKG YYIEYTLQNPGESRKHL+SAIGM+SNGWYNRLYT+TGQ+ +EESE Y S IEK
Sbjct: 121 CRSSKGIYYIEYTLQNPGESRKHLYSAIGMSSNGWYNRLYTITGQYADEESESYSSKIEK 180
Query: 177 AVASFRFI 184
V SF FI
Sbjct: 181 VVNSFAFI 188
>gi|449458059|ref|XP_004146765.1| PREDICTED: psbP domain-containing protein 3, chloroplastic-like
[Cucumis sativus]
Length = 257
Score = 297 bits (761), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 140/188 (74%), Positives = 159/188 (84%), Gaps = 4/188 (2%)
Query: 1 MFQLAFTACSFPAIVSYALAAN----EDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSI 56
M + FTA SF + S ALA + ED R YTDE NKF + IPQDWQ+G GEPNGFKS+
Sbjct: 70 MLGIGFTAFSFQEVGSNALAESVVVAEDYRTYTDEANKFSLVIPQDWQVGNGEPNGFKSV 129
Query: 57 TAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLID 116
TAF+PQE S+S+VSVVI+GLGPD+TRMESFGKVE FADTLVSGLDRSW+RPPGVAAKLID
Sbjct: 130 TAFFPQETSTSNVSVVISGLGPDYTRMESFGKVEEFADTLVSGLDRSWKRPPGVAAKLID 189
Query: 117 CKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEK 176
C++SKG YYIEYTLQNPGESRKHL+SAIGM+SNGWYNRLYT+TGQ+ +EESE Y S IEK
Sbjct: 190 CRSSKGIYYIEYTLQNPGESRKHLYSAIGMSSNGWYNRLYTITGQYADEESESYSSKIEK 249
Query: 177 AVASFRFI 184
V SF FI
Sbjct: 250 VVNSFAFI 257
>gi|188509930|gb|ACD56619.1| unknown predicted protein [Gossypioides kirkii]
Length = 274
Score = 296 bits (757), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 144/182 (79%), Positives = 158/182 (86%), Gaps = 6/182 (3%)
Query: 1 MFQLAFTACSFPA-IVSYALAANE-----DLRVYTDELNKFEISIPQDWQLGAGEPNGFK 54
+ Q A SFP I+S A+A E D RVYTDE NKF+I IPQDWQ+GAGEPN FK
Sbjct: 63 ILQAPLIAFSFPQLIMSTAIAVAEIDVPQDFRVYTDEQNKFKIFIPQDWQVGAGEPNNFK 122
Query: 55 SITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKL 114
SITAFYP+E ++S+VSV ITGLGPDFTRMESFGKV+AFADTLVSGLDRSW+RPPGVAAKL
Sbjct: 123 SITAFYPEEEANSNVSVAITGLGPDFTRMESFGKVDAFADTLVSGLDRSWQRPPGVAAKL 182
Query: 115 IDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNI 174
IDCKA+ GFYYIEYTLQNPGESR+HLFSAIGMASNGWYNRLYTVTGQFVEEE+EKYGS I
Sbjct: 183 IDCKAANGFYYIEYTLQNPGESRRHLFSAIGMASNGWYNRLYTVTGQFVEEEAEKYGSRI 242
Query: 175 EK 176
EK
Sbjct: 243 EK 244
>gi|225457650|ref|XP_002273332.1| PREDICTED: psbP domain-containing protein 3, chloroplastic [Vitis
vinifera]
gi|297745601|emb|CBI40766.3| unnamed protein product [Vitis vinifera]
Length = 253
Score = 295 bits (754), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 137/187 (73%), Positives = 164/187 (87%), Gaps = 3/187 (1%)
Query: 1 MFQLAFTACSFPAIVSYALAANE---DLRVYTDELNKFEISIPQDWQLGAGEPNGFKSIT 57
+ Q+ F+ S AIV ALA E D +VY+DE+NKF+I IPQDWQ+G+GEP+GFKS+T
Sbjct: 67 VLQMVFSTISLQAIVPNALADTEVPEDFKVYSDEVNKFKIQIPQDWQVGSGEPSGFKSVT 126
Query: 58 AFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDC 117
AFYP+EAS S+VSVVITGLG DFTR+ESFGKV+AFA+ LV+GLDRSW+RPPG+AAKLIDC
Sbjct: 127 AFYPEEASGSNVSVVITGLGADFTRLESFGKVDAFAENLVNGLDRSWQRPPGIAAKLIDC 186
Query: 118 KASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKA 177
+A+ GFYYIEY LQNPGESR+HLFSA+GMA+NGWYNRLYTVTGQ++EEESEK+ S IEK
Sbjct: 187 RAANGFYYIEYWLQNPGESRRHLFSAVGMANNGWYNRLYTVTGQYLEEESEKFSSKIEKV 246
Query: 178 VASFRFI 184
VASFRFI
Sbjct: 247 VASFRFI 253
>gi|21537211|gb|AAM61552.1| thylakoid lumen protein, chloroplast precursor [Arabidopsis
thaliana]
Length = 247
Score = 292 bits (748), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 139/187 (74%), Positives = 157/187 (83%), Gaps = 3/187 (1%)
Query: 1 MFQLAFTACSFPAIVSYALA---ANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSIT 57
M Q+A + P +S A A A+E RVYTDE NKFEISIPQDWQ+G EPNGFKSIT
Sbjct: 61 MLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQDWQVGQAEPNGFKSIT 120
Query: 58 AFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDC 117
AFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW++P GV AKLID
Sbjct: 121 AFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQKPVGVTAKLIDS 180
Query: 118 KASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKA 177
+ASKGFYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTGQF +EES + S I+K
Sbjct: 181 RASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDEESSEQSSKIQKT 240
Query: 178 VASFRFI 184
V SFRFI
Sbjct: 241 VKSFRFI 247
>gi|18411110|ref|NP_565131.1| PsbP domain-containing protein 3 [Arabidopsis thaliana]
gi|18203439|sp|Q9S720.2|PPD3_ARATH RecName: Full=PsbP domain-containing protein 3, chloroplastic;
AltName: Full=OEC23-like protein 2; Flags: Precursor
gi|32815945|gb|AAP88357.1| At1g76450 [Arabidopsis thaliana]
gi|110742837|dbj|BAE99317.1| hypothetical protein [Arabidopsis thaliana]
gi|332197723|gb|AEE35844.1| PsbP domain-containing protein 3 [Arabidopsis thaliana]
Length = 247
Score = 292 bits (747), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 139/187 (74%), Positives = 157/187 (83%), Gaps = 3/187 (1%)
Query: 1 MFQLAFTACSFPAIVSYALA---ANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSIT 57
M Q+A + P +S A A A+E RVYTDE NKFEISIPQDWQ+G EPNGFKSIT
Sbjct: 61 MLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQDWQVGQAEPNGFKSIT 120
Query: 58 AFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDC 117
AFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW++P GV AKLID
Sbjct: 121 AFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQKPVGVTAKLIDS 180
Query: 118 KASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKA 177
+ASKGFYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTGQF +EES + S I+K
Sbjct: 181 RASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDEESAEQSSKIQKT 240
Query: 178 VASFRFI 184
V SFRFI
Sbjct: 241 VKSFRFI 247
>gi|224083366|ref|XP_002306998.1| predicted protein [Populus trichocarpa]
gi|222856447|gb|EEE93994.1| predicted protein [Populus trichocarpa]
Length = 193
Score = 289 bits (739), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 136/179 (75%), Positives = 158/179 (88%), Gaps = 3/179 (1%)
Query: 1 MFQLAFTACSFPAIVSYALAAN---EDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSIT 57
+F + FTA +FPAI S ALAA ED RVYTD+ NKF+ISIPQ WQ+GAGEP+G+KS+T
Sbjct: 8 LFNMVFTAFTFPAIASTALAATGVAEDSRVYTDDANKFKISIPQGWQVGAGEPSGYKSVT 67
Query: 58 AFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDC 117
AFYP+EAS+SSVSVVITGLGPDFTR+ESFGKV+AFA+TLV GLDRSW+RPPGVAAKLID
Sbjct: 68 AFYPEEASNSSVSVVITGLGPDFTRLESFGKVDAFAETLVGGLDRSWQRPPGVAAKLIDS 127
Query: 118 KASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEK 176
KA+ G YYIEYTLQNPGESR+HL SA+G+ NGWYNRLYTVTGQFV+EESEK+G+ I K
Sbjct: 128 KAANGLYYIEYTLQNPGESRRHLLSALGVTFNGWYNRLYTVTGQFVDEESEKFGTEIRK 186
>gi|297839519|ref|XP_002887641.1| hypothetical protein ARALYDRAFT_476802 [Arabidopsis lyrata subsp.
lyrata]
gi|297333482|gb|EFH63900.1| hypothetical protein ARALYDRAFT_476802 [Arabidopsis lyrata subsp.
lyrata]
Length = 225
Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 139/188 (73%), Positives = 157/188 (83%), Gaps = 4/188 (2%)
Query: 1 MFQLAFTACSFPAIVSYALA---ANEDLRVYTDELNKFEISIPQ-DWQLGAGEPNGFKSI 56
M Q+A + P VS A A A+E RVYTDE NKFEISIPQ DWQ+G EPNGFKSI
Sbjct: 38 MLQIASSVFFLPLAVSPAFAETNASEAFRVYTDEANKFEISIPQEDWQVGQAEPNGFKSI 97
Query: 57 TAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLID 116
TAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW++P GV AKLID
Sbjct: 98 TAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQKPAGVTAKLID 157
Query: 117 CKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEK 176
++SKGFYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTGQF +EES + S I+K
Sbjct: 158 SRSSKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDEESAEQSSKIQK 217
Query: 177 AVASFRFI 184
V SFRFI
Sbjct: 218 TVKSFRFI 225
>gi|147809819|emb|CAN64877.1| hypothetical protein VITISV_030793 [Vitis vinifera]
Length = 247
Score = 281 bits (720), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 130/179 (72%), Positives = 157/179 (87%), Gaps = 3/179 (1%)
Query: 1 MFQLAFTACSFPAIVSYALAANE---DLRVYTDELNKFEISIPQDWQLGAGEPNGFKSIT 57
+ Q+ F+ S AIV ALA E D +VY+DE+NKF+I IPQDWQ+G+GEP+GFKS+T
Sbjct: 67 VLQIVFSTISLQAIVPNALADTEVPEDFKVYSDEVNKFKIQIPQDWQVGSGEPSGFKSVT 126
Query: 58 AFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDC 117
AFYP+EAS S+VSVVITGLG DFTR+ESFGKV+AFA+ LV+GLDRSW+RPPG+AAKLIDC
Sbjct: 127 AFYPEEASGSNVSVVITGLGADFTRLESFGKVDAFAENLVNGLDRSWQRPPGIAAKLIDC 186
Query: 118 KASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEK 176
+A+ GFYYIEY LQNPGESR+HLFSA+GMA+NGWYNRLYTVTGQ++EEESEK+ S IEK
Sbjct: 187 RAANGFYYIEYWLQNPGESRRHLFSAVGMANNGWYNRLYTVTGQYLEEESEKFSSKIEK 245
>gi|388521577|gb|AFK48850.1| unknown [Lotus japonicus]
Length = 250
Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 133/183 (72%), Positives = 159/183 (86%), Gaps = 5/183 (2%)
Query: 5 AFTACSFPAIVSYALAAN---EDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYP 61
AF A P+ V ALA N ED+R+Y D+ NKF+I IPQDW++G G+ +GFKS+TAFYP
Sbjct: 70 AFAAA--PSTVLKALALNDVVEDVRIYIDDENKFKIEIPQDWEVGTGDSSGFKSLTAFYP 127
Query: 62 QEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASK 121
+EASSS+VSV ITGLGPDFT+MESFGKV+ FA+TLVSGLDRSWR+PPGVAAKLI+ K SK
Sbjct: 128 KEASSSNVSVAITGLGPDFTKMESFGKVDEFAETLVSGLDRSWRKPPGVAAKLINSKPSK 187
Query: 122 GFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASF 181
G YYIEY+LQNPGESR+HL+SAIGMA+NGWYNRLYTVTGQ+VEEE++KY S I+KAV SF
Sbjct: 188 GIYYIEYSLQNPGESRRHLYSAIGMATNGWYNRLYTVTGQYVEEETDKYASEIQKAVTSF 247
Query: 182 RFI 184
+FI
Sbjct: 248 KFI 250
>gi|356508481|ref|XP_003522985.1| PREDICTED: psbP domain-containing protein 3, chloroplastic-like
[Glycine max]
Length = 244
Score = 279 bits (713), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 134/175 (76%), Positives = 154/175 (88%), Gaps = 5/175 (2%)
Query: 15 VSYALAAN---EDLRVYTDELNKFEISIPQDWQLGAG--EPNGFKSITAFYPQEASSSSV 69
V ALA N ED+RVYTD+ NKF+I IPQ+WQ+G G E +GFKSITAFYP AS+S+V
Sbjct: 70 VPNALALNDVSEDVRVYTDDENKFKIEIPQEWQVGTGDGESSGFKSITAFYPTVASNSNV 129
Query: 70 SVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYT 129
SVVITGLGPDFTRMESFGKV+ FA TLVSGLDRSWR+PPGVAAKLIDCK+S G YYIEY+
Sbjct: 130 SVVITGLGPDFTRMESFGKVDEFAQTLVSGLDRSWRKPPGVAAKLIDCKSSDGIYYIEYS 189
Query: 130 LQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 184
LQNPGESR++L+SAIGMASNGWYNRLYTVTGQ+VEEE++KY S ++K VASFRFI
Sbjct: 190 LQNPGESRRYLYSAIGMASNGWYNRLYTVTGQYVEEETDKYASKVQKVVASFRFI 244
>gi|357467179|ref|XP_003603874.1| PsbP domain-containing protein [Medicago truncatula]
gi|355492922|gb|AES74125.1| PsbP domain-containing protein [Medicago truncatula]
Length = 241
Score = 278 bits (711), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 129/172 (75%), Positives = 152/172 (88%), Gaps = 3/172 (1%)
Query: 16 SYALAAN---EDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVV 72
S ALA N ED +YTD+ NKF+I IPQ+WQ+G GE GFKS+TAFYP+E S+S+VSVV
Sbjct: 70 SNALALNDVSEDFSIYTDDENKFKIDIPQEWQIGTGESAGFKSLTAFYPKEQSNSNVSVV 129
Query: 73 ITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQN 132
ITG+GPDFT+MESFGKVE FADTLVSGLDRSW++PPGVAAKLIDCK+SKGFY+IEYTLQ+
Sbjct: 130 ITGVGPDFTKMESFGKVEEFADTLVSGLDRSWKKPPGVAAKLIDCKSSKGFYFIEYTLQS 189
Query: 133 PGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 184
PGE RKHL+SAIGM +NGWYNRLYTVTGQ+ EEE++KY S I+KAV SF+FI
Sbjct: 190 PGEGRKHLYSAIGMLTNGWYNRLYTVTGQYGEEETDKYASKIQKAVRSFKFI 241
>gi|388507848|gb|AFK41990.1| unknown [Medicago truncatula]
Length = 241
Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 128/172 (74%), Positives = 151/172 (87%), Gaps = 3/172 (1%)
Query: 16 SYALAAN---EDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVV 72
S ALA N ED +YTD+ NKF+I IPQ+WQ+G GE GFKS+TAFYP+E S+S+VSVV
Sbjct: 70 SNALALNDVSEDFSIYTDDENKFKIDIPQEWQIGTGESAGFKSLTAFYPKEQSNSNVSVV 129
Query: 73 ITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQN 132
ITG+GPDFT+MESFGKVE FADTLVSGLDRSW++PPGVAAKLIDCK+SKGFY+IEYTLQ+
Sbjct: 130 ITGVGPDFTKMESFGKVEEFADTLVSGLDRSWKKPPGVAAKLIDCKSSKGFYFIEYTLQS 189
Query: 133 PGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 184
PGE RKHL+SAIGM +NGWYNRLYTVTGQ+ EEE++KY S I+K V SF+FI
Sbjct: 190 PGEGRKHLYSAIGMLTNGWYNRLYTVTGQYGEEETDKYASKIQKTVRSFKFI 241
>gi|255646871|gb|ACU23906.1| unknown [Glycine max]
Length = 244
Score = 276 bits (705), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 133/175 (76%), Positives = 153/175 (87%), Gaps = 5/175 (2%)
Query: 15 VSYALAAN---EDLRVYTDELNKFEISIPQDWQLGAG--EPNGFKSITAFYPQEASSSSV 69
V ALA N ED+RVYTD+ NKF+I IPQ+WQ+G G E +GFKSITAFYP AS+S+V
Sbjct: 70 VPNALALNDVSEDVRVYTDDENKFKIEIPQEWQVGTGDGESSGFKSITAFYPTVASNSNV 129
Query: 70 SVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYT 129
SVVITG GPDFTRMESFGKV+ FA TLVSGLDRSWR+PPGVAAKLIDCK+S G YYIEY+
Sbjct: 130 SVVITGPGPDFTRMESFGKVDEFAQTLVSGLDRSWRKPPGVAAKLIDCKSSDGIYYIEYS 189
Query: 130 LQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 184
LQNPGESR++L+SAIGMASNGWYNRLYTVTGQ+VEEE++KY S ++K VASFRFI
Sbjct: 190 LQNPGESRRYLYSAIGMASNGWYNRLYTVTGQYVEEETDKYASKVQKVVASFRFI 244
>gi|356517170|ref|XP_003527262.1| PREDICTED: psbP domain-containing protein 3, chloroplastic-like
[Glycine max]
Length = 248
Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 127/166 (76%), Positives = 150/166 (90%), Gaps = 2/166 (1%)
Query: 21 ANEDLRVYTDELNKFEISIPQDWQLGAG--EPNGFKSITAFYPQEASSSSVSVVITGLGP 78
+ED+RVYTD+ NKF+I IP++WQ+G G E +GFKSITAFYP +AS+S+VSVVITGLGP
Sbjct: 83 VSEDVRVYTDDENKFKIEIPEEWQVGTGDGESSGFKSITAFYPTQASNSNVSVVITGLGP 142
Query: 79 DFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRK 138
DFTRMESFGKV+ FA TLVSGLDRSWR+PPGVAAKLIDCK+S G YYIEY LQNPGESR+
Sbjct: 143 DFTRMESFGKVDEFAQTLVSGLDRSWRKPPGVAAKLIDCKSSNGIYYIEYLLQNPGESRR 202
Query: 139 HLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 184
+L+SAIGMASNGWYNRLYTVTGQ+VEE+++KY S ++K VASFRFI
Sbjct: 203 YLYSAIGMASNGWYNRLYTVTGQYVEEDTDKYASKVQKVVASFRFI 248
>gi|388515155|gb|AFK45639.1| unknown [Medicago truncatula]
Length = 241
Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 127/172 (73%), Positives = 150/172 (87%), Gaps = 3/172 (1%)
Query: 16 SYALAAN---EDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVV 72
S ALA N ED +Y D+ NKF+I IPQ+WQ+G GE GFKS+TAFYP+E S+S+VSVV
Sbjct: 70 SNALALNDVSEDFSIYADDENKFKIDIPQEWQIGTGESAGFKSLTAFYPKEQSNSNVSVV 129
Query: 73 ITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQN 132
ITG+GPDFT+MESFGKVE FADTLVSGLDRSW++PPGVAAKLIDCK+SKGFY+IEYTLQ+
Sbjct: 130 ITGVGPDFTKMESFGKVEEFADTLVSGLDRSWKKPPGVAAKLIDCKSSKGFYFIEYTLQS 189
Query: 133 PGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 184
PGE RKHL+SAIGM +NGWYNRLYTVTGQ+ EEE++KY S I+KAV SF+ I
Sbjct: 190 PGEGRKHLYSAIGMLTNGWYNRLYTVTGQYGEEETDKYASKIQKAVRSFKLI 241
>gi|357467177|ref|XP_003603873.1| PsbP domain-containing protein [Medicago truncatula]
gi|355492921|gb|AES74124.1| PsbP domain-containing protein [Medicago truncatula]
Length = 253
Score = 269 bits (688), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 129/184 (70%), Positives = 152/184 (82%), Gaps = 15/184 (8%)
Query: 16 SYALAAN---EDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVV 72
S ALA N ED +YTD+ NKF+I IPQ+WQ+G GE GFKS+TAFYP+E S+S+VSVV
Sbjct: 70 SNALALNDVSEDFSIYTDDENKFKIDIPQEWQIGTGESAGFKSLTAFYPKEQSNSNVSVV 129
Query: 73 ITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASK----------- 121
ITG+GPDFT+MESFGKVE FADTLVSGLDRSW++PPGVAAKLIDCK+SK
Sbjct: 130 ITGVGPDFTKMESFGKVEEFADTLVSGLDRSWKKPPGVAAKLIDCKSSKVLTASLPRKNG 189
Query: 122 -GFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVAS 180
GFY+IEYTLQ+PGE RKHL+SAIGM +NGWYNRLYTVTGQ+ EEE++KY S I+KAV S
Sbjct: 190 SGFYFIEYTLQSPGEGRKHLYSAIGMLTNGWYNRLYTVTGQYGEEETDKYASKIQKAVRS 249
Query: 181 FRFI 184
F+FI
Sbjct: 250 FKFI 253
>gi|115477246|ref|NP_001062219.1| Os08g0512500 [Oryza sativa Japonica Group]
gi|42408803|dbj|BAD10064.1| thylakoid lumen protein, chloroplast precursor-like [Oryza sativa
Japonica Group]
gi|113624188|dbj|BAF24133.1| Os08g0512500 [Oryza sativa Japonica Group]
gi|215686998|dbj|BAG90812.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201441|gb|EEC83868.1| hypothetical protein OsI_29855 [Oryza sativa Indica Group]
gi|222640852|gb|EEE68984.1| hypothetical protein OsJ_27910 [Oryza sativa Japonica Group]
Length = 242
Score = 245 bits (626), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 112/164 (68%), Positives = 137/164 (83%), Gaps = 2/164 (1%)
Query: 22 NEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFT 81
E R Y DE NKF I+IPQDW +GAGE +GFKS+TAFYP + + S+VSV ITG+GPDFT
Sbjct: 78 QEGFRTYEDEANKFSIAIPQDWLIGAGEVSGFKSVTAFYPDQVADSNVSVAITGIGPDFT 137
Query: 82 RMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLF 141
++SFG V+AFA+TLV+GLDRSW+RPPGVAAKLI+ +A+ GFYYIEYTLQNPGE R+H+
Sbjct: 138 SLKSFGDVDAFAETLVNGLDRSWKRPPGVAAKLINSRAANGFYYIEYTLQNPGEQRRHIV 197
Query: 142 SAIGMASNGWYNRLYTVTGQFVEEES--EKYGSNIEKAVASFRF 183
SAIGMA NGWYNRLYTVTGQ+++E+ +KY + IEK V SFRF
Sbjct: 198 SAIGMAFNGWYNRLYTVTGQYIDEDGDVDKYRAQIEKCVQSFRF 241
>gi|357141874|ref|XP_003572377.1| PREDICTED: psbP domain-containing protein 3, chloroplastic-like
[Brachypodium distachyon]
Length = 352
Score = 234 bits (598), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 109/164 (66%), Positives = 133/164 (81%), Gaps = 2/164 (1%)
Query: 22 NEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFT 81
E Y DE NKF I +PQ WQ+GAGE +GFK++TAF+P +A+ SSVSVVITG+GPDFT
Sbjct: 188 QEGFSEYQDEANKFSIVVPQGWQMGAGEGSGFKNVTAFFPDKAADSSVSVVITGIGPDFT 247
Query: 82 RMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLF 141
++SFG V+AFA+ LV+GLDRSW+RP GV AKLID +AS G YYIEYTLQNPG+ R+H+
Sbjct: 248 SLKSFGDVDAFAENLVTGLDRSWQRPAGVTAKLIDSRASNGMYYIEYTLQNPGDKRRHIV 307
Query: 142 SAIGMASNGWYNRLYTVTGQFVE--EESEKYGSNIEKAVASFRF 183
SAIGMA NGWYNRLYTVTGQ++E EES K+ IEK+V SF+F
Sbjct: 308 SAIGMAFNGWYNRLYTVTGQYIEDDEESVKFKPQIEKSVKSFKF 351
>gi|226496587|ref|NP_001147730.1| LOC100281340 [Zea mays]
gi|195613364|gb|ACG28512.1| thylakoid lumen protein [Zea mays]
gi|224034069|gb|ACN36110.1| unknown [Zea mays]
gi|414869459|tpg|DAA48016.1| TPA: Thylakoid lumen protein isoform 1 [Zea mays]
gi|414869460|tpg|DAA48017.1| TPA: Thylakoid lumen protein isoform 2 [Zea mays]
Length = 256
Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 113/192 (58%), Positives = 147/192 (76%), Gaps = 9/192 (4%)
Query: 1 MFQLAFTACSFPAIV-SYALA------ANEDLRVYTDELNKFEISIPQDWQLGAGEPNGF 53
+ + F+A + P + + ALA + E Y DE NKF I +PQ W +GAGE +G
Sbjct: 64 LLGIVFSAATPPLLAPAGALADEATAESQEGFTTYEDEANKFSIQVPQGWLVGAGEASGI 123
Query: 54 KSITAFYPQEASS-SSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAA 112
KS+TAFYP++A++ S+VSV ITG+GPDFT ++SFG V+AFA+ LV+GLDRSW+RPPG+AA
Sbjct: 124 KSVTAFYPEQAATDSNVSVAITGIGPDFTSLKSFGDVDAFAEGLVNGLDRSWQRPPGLAA 183
Query: 113 KLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFV-EEESEKYG 171
KLID +A+ G YY+EYTLQNPGE R+H+ SAIGMA NGWYNRLYTVTGQ++ +++SEKY
Sbjct: 184 KLIDSRAANGLYYLEYTLQNPGERRRHIVSAIGMAFNGWYNRLYTVTGQYIDDDDSEKYR 243
Query: 172 SNIEKAVASFRF 183
IEKAV SFR
Sbjct: 244 PQIEKAVGSFRL 255
>gi|25373339|pir||C96792 unknown protein F14G6.5 [imported] - Arabidopsis thaliana
gi|6554474|gb|AAF16656.1|AC012394_5 unknown protein; 20843-19352 [Arabidopsis thaliana]
gi|12323974|gb|AAG51945.1|AC015450_6 unknown protein; 20920-22411 [Arabidopsis thaliana]
Length = 220
Score = 231 bits (588), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 118/187 (63%), Positives = 133/187 (71%), Gaps = 30/187 (16%)
Query: 1 MFQLAFTACSFPAIVSYALA---ANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSIT 57
M Q+A + P +S A A A+E RVYTDE NKFEISIPQ
Sbjct: 61 MLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQ---------------- 104
Query: 58 AFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDC 117
VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW++P GV AKLID
Sbjct: 105 -----------VSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQKPVGVTAKLIDS 153
Query: 118 KASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKA 177
+ASKGFYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTGQF +EES + S I+K
Sbjct: 154 RASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDEESAEQSSKIQKT 213
Query: 178 VASFRFI 184
V SFRFI
Sbjct: 214 VKSFRFI 220
>gi|242082241|ref|XP_002445889.1| hypothetical protein SORBIDRAFT_07g027500 [Sorghum bicolor]
gi|241942239|gb|EES15384.1| hypothetical protein SORBIDRAFT_07g027500 [Sorghum bicolor]
Length = 253
Score = 229 bits (584), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 106/166 (63%), Positives = 135/166 (81%), Gaps = 3/166 (1%)
Query: 21 ANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASS-SSVSVVITGLGPD 79
+ E Y DE NKF I +PQ W +GAGE +G KS+TAFYP++A++ S+VSV ITG+GPD
Sbjct: 87 SQEGFTTYEDEANKFSIQVPQGWLVGAGEASGIKSVTAFYPEQAAADSNVSVAITGIGPD 146
Query: 80 FTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKH 139
FT ++SFG V++FA+ LV+GLDRSW+RPPG+AAKLID +A+ G YY+EYTLQNPGE R+H
Sbjct: 147 FTSLKSFGDVDSFAEGLVNGLDRSWQRPPGLAAKLIDSRAANGLYYLEYTLQNPGERRRH 206
Query: 140 LFSAIGMASNGWYNRLYTVTGQFV--EEESEKYGSNIEKAVASFRF 183
+ SAIGMA NGWYNRLYTVTGQ++ +++SEKY IEKAV SFR
Sbjct: 207 IVSAIGMAFNGWYNRLYTVTGQYIDDDDDSEKYRPQIEKAVRSFRL 252
>gi|326501564|dbj|BAK02571.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 167
Score = 229 bits (583), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 106/165 (64%), Positives = 133/165 (80%), Gaps = 2/165 (1%)
Query: 21 ANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDF 80
A E Y DE NKF ++IPQ WQ+GAGE +GFK++TAF+P++ +SSVSVVITG+GPDF
Sbjct: 2 AQEGFTAYEDEANKFTLAIPQGWQVGAGERSGFKNVTAFFPEQNPNSSVSVVITGIGPDF 61
Query: 81 TRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHL 140
T ++SFG V+ FA+ LV+GLDRSW+RP G+ AKLID KA+ G YYIEYTLQNPGE R+H+
Sbjct: 62 TSLKSFGNVDEFAENLVTGLDRSWQRPAGLTAKLIDSKAANGLYYIEYTLQNPGEKRRHI 121
Query: 141 FSAIGMASNGWYNRLYTVTGQFV--EEESEKYGSNIEKAVASFRF 183
SAIGMA NGWYNRLYTVTGQ++ +E+S Y IEK+V SF+F
Sbjct: 122 VSAIGMAFNGWYNRLYTVTGQYIDDDEDSAIYKPEIEKSVKSFKF 166
>gi|326518660|dbj|BAJ88359.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 287
Score = 228 bits (582), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 104/158 (65%), Positives = 131/158 (82%), Gaps = 2/158 (1%)
Query: 28 YTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFG 87
Y DE NKF ++IPQ WQ+GAGE +GFK++TAF+P++ +SSVSVVITG+GPDFT ++SFG
Sbjct: 129 YEDEANKFTLAIPQGWQVGAGERSGFKNVTAFFPEQNPNSSVSVVITGIGPDFTSLKSFG 188
Query: 88 KVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMA 147
V+ FA+ LV+GLDRSW+RP G+ AKLID KA+ G YYIEYTLQNPGE R+H+ SAIGMA
Sbjct: 189 NVDEFAENLVTGLDRSWQRPAGLTAKLIDSKAANGLYYIEYTLQNPGEKRRHIVSAIGMA 248
Query: 148 SNGWYNRLYTVTGQFV--EEESEKYGSNIEKAVASFRF 183
NGWYNRLYTVTGQ++ +E+S Y IEK+V SF+F
Sbjct: 249 FNGWYNRLYTVTGQYIDDDEDSAIYKPEIEKSVKSFKF 286
>gi|116784465|gb|ABK23352.1| unknown [Picea sitchensis]
Length = 256
Score = 228 bits (582), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 105/188 (55%), Positives = 142/188 (75%), Gaps = 4/188 (2%)
Query: 1 MFQLAFTACSFPAIVSYALAA----NEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSI 56
+ Q+A + P VS A AA ED +Y DE +KF + +P+DW G G+ +G +++
Sbjct: 69 ICQIAALFSAIPCTVSAARAAETELQEDYELYKDETDKFSLLVPRDWIKGEGKTDGQRAV 128
Query: 57 TAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLID 116
TAFYP+ S+V+V+ITGL D+T+MESFG V+AFA+TLV+ LDRSW+RPPG AAKL++
Sbjct: 129 TAFYPESGIVSNVNVIITGLSADYTKMESFGTVDAFAETLVNSLDRSWKRPPGQAAKLLN 188
Query: 117 CKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEK 176
K+ G YYIEY+LQ PGES+ HL SAIGMA NGWYNRLYTVTGQ++E+++ KYGS IEK
Sbjct: 189 AKSKNGLYYIEYSLQKPGESKIHLLSAIGMAMNGWYNRLYTVTGQYLEDDAGKYGSKIEK 248
Query: 177 AVASFRFI 184
+++SFR +
Sbjct: 249 SISSFRLV 256
>gi|326512572|dbj|BAJ99641.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 244
Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 104/158 (65%), Positives = 131/158 (82%), Gaps = 2/158 (1%)
Query: 28 YTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFG 87
Y DE NKF ++IPQ WQ+GAGE +GFK++TAF+P++ +SSVSVVITG+GPDFT ++SFG
Sbjct: 86 YEDEANKFTLAIPQGWQVGAGERSGFKNVTAFFPEQNPNSSVSVVITGIGPDFTSLKSFG 145
Query: 88 KVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMA 147
V+ FA+ LV+GLDRSW+RP G+ AKLID KA+ G YYIEYTLQNPGE R+H+ SAIGMA
Sbjct: 146 NVDEFAENLVTGLDRSWQRPAGLTAKLIDSKAANGLYYIEYTLQNPGEKRRHIVSAIGMA 205
Query: 148 SNGWYNRLYTVTGQFV--EEESEKYGSNIEKAVASFRF 183
NGWYNRLYTVTGQ++ +E+S Y IEK+V SF+F
Sbjct: 206 FNGWYNRLYTVTGQYIDDDEDSAIYKPEIEKSVKSFKF 243
>gi|215274041|gb|ACJ64918.1| unknown [Arachis diogoi]
Length = 110
Score = 203 bits (517), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 92/110 (83%), Positives = 105/110 (95%)
Query: 75 GLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPG 134
G+GPDFT+MESFGKVE FA+TL+ GLDRSW+RPPGVAAKLIDCK+SKGFYYIEY+LQNPG
Sbjct: 1 GVGPDFTKMESFGKVEEFAETLIGGLDRSWQRPPGVAAKLIDCKSSKGFYYIEYSLQNPG 60
Query: 135 ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 184
ESR+ L+SAIGMASNGWYNRLYTVTGQFVEEE++KY S ++KAVASFRFI
Sbjct: 61 ESRRTLYSAIGMASNGWYNRLYTVTGQFVEEETDKYASKVKKAVASFRFI 110
>gi|168003549|ref|XP_001754475.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694577|gb|EDQ80925.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 255
Score = 186 bits (471), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 118/173 (68%)
Query: 12 PAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSV 71
PA + A + Y D +KF + +PQ W G G+ +G + +TAFYP + ++V++
Sbjct: 83 PARSATDTDAATEFTTYEDAADKFTLLVPQAWNRGEGKTSGQRKVTAFYPADGGLTNVNI 142
Query: 72 VITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQ 131
VITGLG DFT + SFG + FA+ LV+ LDRSW++PPG A+L+DCK+ YY+EYT+Q
Sbjct: 143 VITGLGADFTSLGSFGTADNFAENLVNSLDRSWQKPPGQKARLVDCKSRADKYYVEYTIQ 202
Query: 132 NPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 184
GE ++HL S +G+ +NGW NRLYTVTGQ+ EE+S KY +I K ++SF+ +
Sbjct: 203 RLGEQQRHLVSVVGIGNNGWVNRLYTVTGQYFEEDSAKYKQDINKIISSFKIL 255
>gi|302818180|ref|XP_002990764.1| hypothetical protein SELMODRAFT_448162 [Selaginella moellendorffii]
gi|300141502|gb|EFJ08213.1| hypothetical protein SELMODRAFT_448162 [Selaginella moellendorffii]
Length = 221
Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 114/164 (69%), Gaps = 2/164 (1%)
Query: 21 ANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDF 80
A ++ +VY +E +KF +++P+DW G G+ G + + AF+P +A+ +V+V+IT LG DF
Sbjct: 58 AADEYQVY-EEQDKFSLTVPKDWIKGEGK-AGSRRVVAFHPSKATFPNVNVIITNLGADF 115
Query: 81 TRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHL 140
T + S G V+AFA ++V +DRS++RPPG AA+L++ + G YY++YT+Q PGE+++H
Sbjct: 116 TGIGSLGSVDAFAASVVGSMDRSYKRPPGTAARLVNAVSRNGMYYLDYTVQTPGEAQRHF 175
Query: 141 FSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 184
FS G+ +Y +LYT TGQ+ E + ++ +++A+ SFR +
Sbjct: 176 FSVAGVGETQFYKQLYTATGQYWEADGDRDRKALQEAIESFRIV 219
>gi|356577616|ref|XP_003556920.1| PREDICTED: LOW QUALITY PROTEIN: psbP domain-containing protein 3,
chloroplastic-like [Glycine max]
Length = 113
Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 72/102 (70%), Positives = 84/102 (82%), Gaps = 2/102 (1%)
Query: 19 LAANEDLRVYTDELNKFEISIPQDWQLGA--GEPNGFKSITAFYPQEASSSSVSVVITGL 76
+ +ED+RVYT+ NKF+I IPQ+WQ+G GE +GFKSITAFYP AS+S+VSVVITGL
Sbjct: 12 IDVSEDVRVYTENENKFKIEIPQEWQVGTRDGESSGFKSITAFYPTVASNSNVSVVITGL 71
Query: 77 GPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCK 118
GP+FTRMESFGKV FA TLVSGLD S R+P GVAAKLI CK
Sbjct: 72 GPNFTRMESFGKVGEFAQTLVSGLDGSXRKPSGVAAKLIHCK 113
>gi|116782591|gb|ABK22563.1| unknown [Picea sitchensis]
Length = 208
Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 68/135 (50%), Positives = 95/135 (70%), Gaps = 4/135 (2%)
Query: 1 MFQLAFTACSFPAIVSYALAA----NEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSI 56
+ Q+A + P VS A AA ED +Y DE +KF + +P+DW G G+ +G +++
Sbjct: 69 ICQIAALFSAIPCTVSAARAAETELQEDYELYKDETDKFSLLVPRDWIKGEGKTDGQRAV 128
Query: 57 TAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLID 116
TAFYP+ S+V+V+ITGL D+T+MES G V+AFA+TLV+ LDRSW+RPPG AAKL++
Sbjct: 129 TAFYPESGIVSNVNVIITGLSADYTKMESLGTVDAFAETLVNSLDRSWKRPPGQAAKLLN 188
Query: 117 CKASKGFYYIEYTLQ 131
K+ G YYIEY+LQ
Sbjct: 189 AKSKNGLYYIEYSLQ 203
>gi|413953068|gb|AFW85717.1| hypothetical protein ZEAMMB73_055926 [Zea mays]
Length = 277
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 89/141 (63%), Gaps = 25/141 (17%)
Query: 22 NEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASS-SSVSVVITGLGPDF 80
+E Y DE NKF I +PQ W +GAGE +G KS+TAFYP++A++ S+VSV I +GPDF
Sbjct: 124 DEGFTTYEDEANKFNIQVPQGWLVGAGEASGIKSVTAFYPEQAATDSNVSVAIIEIGPDF 183
Query: 81 TRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHL 140
T ++SFG V AFA+ LV YY+EYT QNPGE R+H+
Sbjct: 184 TSLKSFGDVAAFAEGLVR------------------------LYYLEYTSQNPGERRRHI 219
Query: 141 FSAIGMASNGWYNRLYTVTGQ 161
SAIGMA NGWYNRLY TGQ
Sbjct: 220 VSAIGMAFNGWYNRLYIATGQ 240
>gi|357467181|ref|XP_003603875.1| PsbP domain-containing protein [Medicago truncatula]
gi|355492923|gb|AES74126.1| PsbP domain-containing protein [Medicago truncatula]
Length = 174
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 75/91 (82%), Gaps = 3/91 (3%)
Query: 16 SYALAAN---EDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVV 72
S ALA N ED +YTD+ NKF+I IPQ+WQ+G GE GFKS+TAFYP+E S+S+VSVV
Sbjct: 70 SNALALNDVSEDFSIYTDDENKFKIDIPQEWQIGTGESAGFKSLTAFYPKEQSNSNVSVV 129
Query: 73 ITGLGPDFTRMESFGKVEAFADTLVSGLDRS 103
ITG+GPDFT+MESFGKVE FADTLV LD++
Sbjct: 130 ITGVGPDFTKMESFGKVEEFADTLVLFLDQN 160
>gi|307103403|gb|EFN51663.1| hypothetical protein CHLNCDRAFT_139877 [Chlorella variabilis]
Length = 295
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 90/183 (49%), Gaps = 27/183 (14%)
Query: 27 VYTDELNKFEISIPQDWQLGAG----------------EPNGFKSITAFYPQEASSSSVS 70
VYTD +KF I +P W L G G + + AF P++ SV+
Sbjct: 107 VYTDPEDKFSIEVPSGWALATGAFGEEGTLTTNQARFSNAAGLRRVVAFLPEDKPEVSVA 166
Query: 71 VVITGLGPDFTRMESFGKVEAFADTLVSGLDRS-------WRR---PPGVAAKLIDCK-A 119
V I LG D+T + SFG + FA +V+ +D S WRR PP AKL+D K
Sbjct: 167 VTIQFLGADYTGLGSFGTAQDFATGVVNKMDNSYILKLPEWRRAKEPPVQVAKLLDVKDV 226
Query: 120 SKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVA 179
K Y YTL GE+++ ++ A+ + +NG NR YTV + E+YG ++K V
Sbjct: 227 DKRQYMFAYTLAKEGEAQRTVYQAVAVGNNGRTNRFYTVNASCAGADVEQYGPVLQKIVE 286
Query: 180 SFR 182
SFR
Sbjct: 287 SFR 289
>gi|159480798|ref|XP_001698469.1| hypothetical protein CHLREDRAFT_205923 [Chlamydomonas reinhardtii]
gi|158282209|gb|EDP07962.1| predicted protein [Chlamydomonas reinhardtii]
Length = 258
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 93/175 (53%), Gaps = 21/175 (12%)
Query: 28 YTDELNKFEISIPQDWQLGAGEPNGFKSIT---------AFYPQEASSSSVSVVIT--GL 76
YTD + F + IP +W G G+ +G S + A++P+ S V+V IT +
Sbjct: 77 YTDPQDAFTLKIPANWGFGEGQLSGNSSFSGASGARRTLAWFPENVSPRDVNVTITVTNV 136
Query: 77 GPDFTRMESFGKVEAFADTLVSGLDRSW---------RRPPGVAAKLIDCKASKGFYYIE 127
+FT++ SFG FA LV+ DRS+ R P + AKLID Y++E
Sbjct: 137 SVEFTKLGSFGTPLQFASNLVNSQDRSYMLRGPEWARRNEPIMVAKLIDAGEISNKYFLE 196
Query: 128 YTLQN-PGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASF 181
YTLQ P E ++HL++A+ + NG YNRLY+VT Q +EE +Y + + V S
Sbjct: 197 YTLQKVPDEPKRHLYTAVALGYNGTYNRLYSVTAQSLEELKPQYEATLLAMVKSL 251
>gi|384245846|gb|EIE19338.1| hypothetical protein COCSUDRAFT_58632 [Coccomyxa subellipsoidea
C-169]
Length = 191
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 82/137 (59%), Gaps = 6/137 (4%)
Query: 52 GFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSW-----RR 106
G + A+YP+ + ++V+V++T +G D+T + SFG ++F + L++ LDRS+
Sbjct: 49 GTRRALAWYPEGGTDTNVTVLVTNVGADYTALGSFGSADSFGENLIASLDRSFLLRGGMN 108
Query: 107 PPGVAAKLIDCKASKGFYYIEYTLQNPGE-SRKHLFSAIGMASNGWYNRLYTVTGQFVEE 165
P AKL+D K+ G Y++EYT+Q P E +H SA+ + NG YNR YT+T Q E
Sbjct: 109 RPQSRAKLLDAKSRSGMYFLEYTVQKPEEIEPRHFLSAVALGFNGRYNRFYTLTAQCPEA 168
Query: 166 ESEKYGSNIEKAVASFR 182
+ Y + +E V SFR
Sbjct: 169 DLSTYRATLEGVVNSFR 185
>gi|255083562|ref|XP_002504767.1| oxygen-evolving enhancer PsbP [Micromonas sp. RCC299]
gi|226520035|gb|ACO66025.1| oxygen-evolving enhancer PsbP [Micromonas sp. RCC299]
Length = 248
Score = 102 bits (253), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 100/190 (52%), Gaps = 12/190 (6%)
Query: 4 LAFTACSFPAIVSYALAANED------LRVYTDELNKFEISIPQDWQLGAGE----PNGF 53
LA A S +I ++ A D +VY DE +K+ +++P DW+ G+ P
Sbjct: 51 LAGAATSLVSIAAFPRVARADEPATTLTQVYNDEEDKYSLAVPSDWERALGDTSPNPQST 110
Query: 54 KSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSW-RRPPGVAA 112
+ + AFYP +V+VV T LG D+ +M SFG + FA + +G+ R R+ P +
Sbjct: 111 RKVIAFYPPGQPEINVNVVATALGADYPKMGSFGSPDEFAYGVAAGMTRPKPRQGPKQFS 170
Query: 113 KLIDCKASKGFYYIEYTLQNPGES-RKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYG 171
++D K + Y IEYT++ P E+ +HL SA+G+ NG NRL+T+T E+ +
Sbjct: 171 YVVDAKNAGDRYVIEYTVERPEENFYQHLLSAVGIGYNGRVNRLFTLTAVCPEDRYAEME 230
Query: 172 SNIEKAVASF 181
K A+F
Sbjct: 231 PMFRKIFATF 240
>gi|414869461|tpg|DAA48018.1| TPA: hypothetical protein ZEAMMB73_646546 [Zea mays]
gi|414869462|tpg|DAA48019.1| TPA: hypothetical protein ZEAMMB73_646546 [Zea mays]
Length = 178
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 60/78 (76%), Gaps = 1/78 (1%)
Query: 21 ANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASS-SSVSVVITGLGPD 79
+ E Y DE NKF I +PQ W +GAGE +G KS+TAFYP++A++ S+VSV ITG+GPD
Sbjct: 91 SQEGFTTYEDEANKFSIQVPQGWLVGAGEASGIKSVTAFYPEQAATDSNVSVAITGIGPD 150
Query: 80 FTRMESFGKVEAFADTLV 97
FT ++SFG V+AFA+ LV
Sbjct: 151 FTSLKSFGDVDAFAEGLV 168
>gi|303283586|ref|XP_003061084.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457435|gb|EEH54734.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 265
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 85/162 (52%), Gaps = 6/162 (3%)
Query: 20 AANEDLRVYTDELNKFEISIPQDWQLGAG----EPNGFKSITAFYPQEASSSSVSVVITG 75
A + + Y D +K+ S+P DW+ G P + +TA++P +V+VV T
Sbjct: 90 AEGAETKRYVDAEDKYSFSVPADWEQAIGTTDDNPQSSRRVTAYFPPGDPDINVNVVCTA 149
Query: 76 LGPDFTRMESFGKVEAFADTLVSGLDRSWRRP-PGVAAKLIDCKASKGFYYIEYTLQNPG 134
LG D+ +M SFG + FA + +G+ R + P + +++ K+ Y+IEYT++ P
Sbjct: 150 LGADYPKMGSFGSPDEFAFGVAAGMTRPKPKSGPKQFSYVLNAKSKGDKYFIEYTVERPS 209
Query: 135 ES-RKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIE 175
E +HL S +G+ NG +RL T T E++ + + +E
Sbjct: 210 EDFYQHLMSVVGVGYNGRVSRLITATAVCPEDKFAENKAKLE 251
>gi|308799735|ref|XP_003074648.1| thylakoid lumen protein, chloroplast prec (ISS) [Ostreococcus
tauri]
gi|116000819|emb|CAL50499.1| thylakoid lumen protein, chloroplast prec (ISS) [Ostreococcus
tauri]
Length = 195
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 78/177 (44%), Gaps = 14/177 (7%)
Query: 21 ANEDLRVYTDELNKFEISIPQDWQLGAGE--------PNGFKSI-TAFYPQEASSSSVSV 71
A+E LR Y D+ +F + P DW + G G + + T P +V+V
Sbjct: 13 ADESLRTYADDELRFTLEYPSDWVVATGSLERSENPMGGGARDVWTISPPGRTRDVNVTV 72
Query: 72 VITGLGPDFTRMESFGKVEAFADTLVSGLDR----SWRRPPGVAAKLIDCKASKGFYYIE 127
V T G DFT+M S G F LV+ L R R A+L+D +Y +E
Sbjct: 73 VATPAGADFTKMGSLGDAYGFGMGLVAPLHRPKLKKGREDRVQRAELVDAYGKGDYYKVE 132
Query: 128 YTLQNPGESRKHLFSAI-GMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF 183
YT + P +F + G+ +G LYT T QF E K+ + IE V S ++
Sbjct: 133 YTFERPAADIDSVFLVLAGLGYDGRVGHLYTTTAQFPRAEESKWRAQIEAIVDSVKY 189
>gi|412985511|emb|CCO18957.1| predicted protein [Bathycoccus prasinos]
Length = 319
Score = 75.5 bits (184), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 95/195 (48%), Gaps = 32/195 (16%)
Query: 17 YALAANED--------------LRVYTDELNKFEISIPQD-WQL------GAGEPNGFKS 55
YA AA ED YTDE+ KF +S P D WQL G+G+ +G +
Sbjct: 119 YAFAAEEDESSTKMMNTNTNKNTTTYTDEVLKFSLSYPTDSWQLLVGETGGSGDRSGSRQ 178
Query: 56 ITAFYPQEASSSSV--SVVITGLGPDFTRMESFGKVEAFADTLVSGLDR----SWRRPPG 109
+ AF P+ A+ V S+V T +G D+ +M SFG F +V+ +++ R
Sbjct: 179 VIAFAPKNANPKDVNISLVATPVGADYPKMGSFGSPFEFGYNMVNPMNKPKAKKGREDEV 238
Query: 110 VAAKLIDCKASKGF-YYIEYTLQNP--GESRKHLFSAIGMASNGWYNRLYTVTGQFVEEE 166
++LI+ SKG Y++EY L P G K L A G+ +G + LY+ T Q + E
Sbjct: 239 QYSELIEA-GSKGLNYFVEYELTRPSTGIDSKQLVVA-GIGYDGRVSHLYSTTAQMPKGE 296
Query: 167 SEKYGSNIEKAVASF 181
EK+ IEK + S
Sbjct: 297 EEKWRPEIEKILESL 311
>gi|302849364|ref|XP_002956212.1| hypothetical protein VOLCADRAFT_97118 [Volvox carteri f.
nagariensis]
gi|300258515|gb|EFJ42751.1| hypothetical protein VOLCADRAFT_97118 [Volvox carteri f.
nagariensis]
Length = 205
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 74/172 (43%), Gaps = 43/172 (25%)
Query: 21 ANEDLRVYTDELNKFEISIPQDWQLGAGE---------PNGFKSITAFYPQEASSSSVSV 71
A L YTD + F +++P W G GE +G + + P+ A+ V+V
Sbjct: 21 ATSVLSRYTDPQDGFTLAVPPGWVFGEGELPGNSSFSGASGARRTLVWIPEGANPRDVNV 80
Query: 72 --VITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYT 129
VIT + V AKL+D G Y++EYT
Sbjct: 81 TLVITNVS--------------------------------VVAKLVDATELSGRYFVEYT 108
Query: 130 LQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASF 181
+Q E ++HL+S + + NG YNRLYT+T Q +E + +Y + + V S
Sbjct: 109 VQKLPEPQRHLYSLLALGYNGMYNRLYTITAQTLEGDRPQYEAALLSMVKSL 160
>gi|145341129|ref|XP_001415667.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575890|gb|ABO93959.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 192
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 17/175 (9%)
Query: 25 LRVYTDELNKFEISIPQDWQLGAGEP--------NGFKSITAFYPQEASSSSVSVVI--T 74
L Y D+ KF++ P DW GE G + + P A++ V+V I T
Sbjct: 13 LTTYEDDKLKFKVQYPSDWTTSTGETPASEEILGGGARDLFTISPPGANARDVNVTIVAT 72
Query: 75 GLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVA-----AKLIDCKASKGFYYIEYT 129
G DFT+M S G F LV L++ R G A+LID +Y +EY
Sbjct: 73 PAGADFTKMGSLGDAYGFGYGLVVPLNKP-RAKKGQEDRIQFAELIDSVGKGDYYKVEYK 131
Query: 130 LQNPGESRKHLFSAI-GMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF 183
P +F + G+ +G + LYT T Q+ E +K+ + +E + S +
Sbjct: 132 FAKPSTGINSIFFVLAGLGYDGRVSHLYTATAQYPRAEEDKWRAQVEAIIDSVVY 186
>gi|414869463|tpg|DAA48020.1| TPA: hypothetical protein ZEAMMB73_646546 [Zea mays]
Length = 40
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 32/39 (82%), Gaps = 1/39 (2%)
Query: 146 MASNGWYNRLYTVTGQFV-EEESEKYGSNIEKAVASFRF 183
MA NGWYNRLYTVTGQ++ +++SEKY IEKAV SFR
Sbjct: 1 MAFNGWYNRLYTVTGQYIDDDDSEKYRPQIEKAVGSFRL 39
>gi|298709150|emb|CBJ31094.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 230
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 11/156 (7%)
Query: 26 RVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMES 85
+ +TD+ F +P W+ E +G + I + ++ V T DFT + S
Sbjct: 80 QTFTDDALGFNFDVPDGWERNDAEISGRRKIVVYTSPTTPGANAFVAYTPARGDFTTLGS 139
Query: 86 FGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSA-I 144
FG ++ + T++ GV++++++ K Y +Y + G KH+ + +
Sbjct: 140 FGTLDEVSKTVLP-------EASGVSSRMLESYTYKNSYVYDYIVDQEGRPEKHIKTMWV 192
Query: 145 GMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVAS 180
G +L T+T Q E + K G I+ +AS
Sbjct: 193 LFPEQG---QLATITAQCNESDYAKVGKTIDSLIAS 225
>gi|255542694|ref|XP_002512410.1| conserved hypothetical protein [Ricinus communis]
gi|223548371|gb|EEF49862.1| conserved hypothetical protein [Ricinus communis]
Length = 268
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 14/136 (10%)
Query: 56 ITAFYPQEASSS-SVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKL 114
+ AF P +S +VSV+++ + PDF+ +E+FG E + +V + S RR P V L
Sbjct: 139 VVAFGPPGSSGELNVSVIVSPVPPDFS-IEAFGGPEEVGEAVVKTITASGRR-PDVKGSL 196
Query: 115 I------DCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESE 168
+ D + +Y +E+ +++P R ++ A+ +G RLYT+ Q E +
Sbjct: 197 VQSRLREDSLRNVNYYELEFRVESPSFQRHNV--AVCCTRDG---RLYTLNAQAPESAWQ 251
Query: 169 KYGSNIEKAVASFRFI 184
K + + SF +
Sbjct: 252 KVSPDFSRIAESFTLL 267
>gi|226531512|ref|NP_001142529.1| uncharacterized protein LOC100274771 [Zea mays]
gi|195605962|gb|ACG24811.1| hypothetical protein [Zea mays]
Length = 282
Score = 44.3 bits (103), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 69/127 (54%), Gaps = 17/127 (13%)
Query: 48 GEPNGFKSIT----AFYPQEASSS-SVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDR 102
G P+G ++I+ AF P ++ +VSV+++ + DF+ +E+FG + + ++ + R
Sbjct: 140 GSPSGPRNISEPVAAFGPPGSNGELNVSVIVSTVPRDFS-IETFGSPKDVGEVVLRRIAR 198
Query: 103 SWRRPPGVAAKLIDCKASKG-----FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYT 157
+ RR PG+ A LID + +Y +E+ +++P R ++ A+ +G RLYT
Sbjct: 199 T-RRSPGINATLIDAAVREDAGRVKYYKLEFRVESPSFRRHNV--AVCCVRDG---RLYT 252
Query: 158 VTGQFVE 164
+ Q E
Sbjct: 253 MNAQAPE 259
>gi|428171810|gb|EKX40724.1| hypothetical protein GUITHDRAFT_113254 [Guillardia theta CCMP2712]
Length = 222
Score = 43.1 bits (100), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 73/162 (45%), Gaps = 11/162 (6%)
Query: 28 YTDELNKFEISIPQDWQLGAGE-PNGFKS-----ITAFYPQEASSSSVSVVITGLGPDFT 81
Y D+ FE +PQ W G E P G ++ I +F + ++++V + PD++
Sbjct: 64 YADDARGFEFQVPQGWIQGEAEFPGGNRNPARPKIISFRSPTSDDFNIALVSYSIQPDYS 123
Query: 82 RMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLF 141
++ SFG +E A ++ +++ ++ K + G Y Y + N
Sbjct: 124 KLGSFGTIEDVAKNIIGTNEKASTIGEILSQKQTNLGGGPG-YIFNYRI-NDKRLATIFT 181
Query: 142 SAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF 183
+++G + W L T+T Q E + + ++E+ + SF+
Sbjct: 182 TSVGSSGACW---LVTLTMQCPEAQWDDNQKSVEEVLKSFKL 220
>gi|414878822|tpg|DAA55953.1| TPA: hypothetical protein ZEAMMB73_857058 [Zea mays]
Length = 283
Score = 41.6 bits (96), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 68/127 (53%), Gaps = 17/127 (13%)
Query: 48 GEPNGFKSIT----AFYPQEASSS-SVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDR 102
G P+G ++I+ AF P ++ +VSV+++ + DF+ +E+FG + + ++ + R
Sbjct: 141 GSPSGPRNISEPVAAFGPPGSNGELNVSVIVSTVPRDFS-IETFGSPKDVGEVVLRRIAR 199
Query: 103 SWRRPPGVAAKLIDCKASKG-----FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYT 157
+ RR P + A LID + +Y +E+ +++P R ++ A+ +G RLYT
Sbjct: 200 T-RRSPDINATLIDAAVREDAGRVKYYKLEFRVESPSFRRHNV--AVCCVRDG---RLYT 253
Query: 158 VTGQFVE 164
+ Q E
Sbjct: 254 MNAQAPE 260
>gi|242055511|ref|XP_002456901.1| hypothetical protein SORBIDRAFT_03g045040 [Sorghum bicolor]
gi|241928876|gb|EES02021.1| hypothetical protein SORBIDRAFT_03g045040 [Sorghum bicolor]
Length = 279
Score = 41.2 bits (95), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 65/125 (52%), Gaps = 13/125 (10%)
Query: 46 GAGEPNGFKSITAFYPQEASSS-SVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSW 104
G N + + AF P +S +VSV+++ + DF+ +E+FG + + ++ + R+
Sbjct: 139 GKSPRNISEPVAAFGPPGSSGELNVSVIVSPVPRDFS-IEAFGSPKDVGEVVLRRIART- 196
Query: 105 RRPPGVAAKLIDCKA-----SKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVT 159
RR P + A LID S +Y +E+ +++P R ++ A+ A +G +LYT+
Sbjct: 197 RRSPDINATLIDAALREDADSVKYYKLEFRVESPSFQRHNV--AVCCARDG---KLYTMN 251
Query: 160 GQFVE 164
Q E
Sbjct: 252 AQAPE 256
>gi|259490126|ref|NP_001159068.1| uncharacterized protein LOC100304114 [Zea mays]
gi|195650741|gb|ACG44838.1| hypothetical protein [Zea mays]
Length = 282
Score = 39.7 bits (91), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 67/127 (52%), Gaps = 17/127 (13%)
Query: 48 GEPNGFKSIT----AFYPQEASSS-SVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDR 102
G P+G ++I+ AF P ++ +VSV+++ + DF+ +E+FG + + ++ + R
Sbjct: 140 GSPSGPRNISEPVAAFGPPGSNGELNVSVIVSTVPRDFS-IETFGSPKDVGEVVLRRIAR 198
Query: 103 SWRRPPGVAAKLIDCKASKG-----FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYT 157
+ RR P + A LID + +Y +E+ +++P R ++ A+ +G RLY
Sbjct: 199 T-RRSPDINATLIDAXVREDAGRVKYYKLEFRVESPSFRRHNV--AVCCVRDG---RLYX 252
Query: 158 VTGQFVE 164
+ Q E
Sbjct: 253 MNAQAPE 259
>gi|219115451|ref|XP_002178521.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410256|gb|EEC50186.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 223
Score = 39.3 bits (90), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 9/163 (5%)
Query: 25 LRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRME 84
L + D + F + +P W + + ++I + + +SV V T + DFT +
Sbjct: 60 LTPFLDSRHGFTVDVPSQWSRTEQQLSDRRTIVVWTDPADARASVFVAYTPVRDDFTSLG 119
Query: 85 SFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEY-----TLQNPGESRKH 139
SFG V+ A + L ++ V A ++ + K Y+ +Y +Q P R
Sbjct: 120 SFGSVDQVAAQTI--LPKAQIAGVDVEATMLAAVSQKQAYFFDYRQAVPNVQPPTHFRT- 176
Query: 140 LFSAIGMASNGWYNRLYTVTGQFVEEE-SEKYGSNIEKAVASF 181
+F+ A+ G L T+T Q EE + KY S + + S+
Sbjct: 177 IFTLQQGATGGAGAVLVTLTAQCPEELYATKYQSLFDSILDSY 219
>gi|222640410|gb|EEE68542.1| hypothetical protein OsJ_27001 [Oryza sativa Japonica Group]
Length = 244
Score = 38.9 bits (89), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 73/186 (39%), Gaps = 35/186 (18%)
Query: 10 SFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQ--LGAGEPNGFKSITAFYPQEASSS 67
S+P +YA A + TD+ + + P WQ + G+ +K + + S
Sbjct: 78 SWPNPAAYAAEAKKGFLPVTDKKDGYSFLYPFGWQEVVVQGQDKVYKDVI----EPLESV 133
Query: 68 SVSVVITG------LGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKAS- 120
SV+ + T LGP D + L R P KLI+ K +
Sbjct: 134 SVNTIPTSKQDIRELGP--------------PDQVAEALIRKVLAAPTQKTKLIEAKEND 179
Query: 121 ---KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKA 177
+ +Y E+T Q P +R H AI +A NG + YT+T E EK +
Sbjct: 180 VDGRTYYTFEFTAQAPNFTR-HALGAIAIA-NG---KFYTLTTGANERRWEKIKDRLHTV 234
Query: 178 VASFRF 183
V SF+
Sbjct: 235 VDSFKI 240
>gi|38636895|dbj|BAD03159.1| oxygen evolving complex protein-like [Oryza sativa Japonica Group]
Length = 257
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 73/186 (39%), Gaps = 35/186 (18%)
Query: 10 SFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQ--LGAGEPNGFKSITAFYPQEASSS 67
S+P +YA A + TD+ + + P WQ + G+ +K + + S
Sbjct: 78 SWPNPAAYAAEAKKGFLPVTDKKDGYSFLYPFGWQEVVVQGQDKVYKDVI----EPLESV 133
Query: 68 SVSVVITG------LGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKAS- 120
SV+ + T LGP D + L R P KLI+ K +
Sbjct: 134 SVNTIPTSKQDIRELGP--------------PDQVAEALIRKVLAAPTQKTKLIEAKEND 179
Query: 121 ---KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKA 177
+ +Y E+T Q P +R H AI +A NG + YT+T E EK +
Sbjct: 180 VDGRTYYTFEFTAQAPNFTR-HALGAIAIA-NG---KFYTLTTGANERRWEKIKDRLHTV 234
Query: 178 VASFRF 183
V SF+
Sbjct: 235 VDSFKI 240
>gi|443312253|ref|ZP_21041872.1| PsbP [Synechocystis sp. PCC 7509]
gi|442777723|gb|ELR87997.1| PsbP [Synechocystis sp. PCC 7509]
Length = 181
Score = 38.5 bits (88), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 18/169 (10%)
Query: 19 LAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGP 78
+ A L+ Y D ++ +E P WQ NG + F+ S +VSVV++ +
Sbjct: 22 VTAGAGLKSYVDAISGYEFLYPNGWQ-PVKVANGADVV--FHDLIEISENVSVVVSPVAN 78
Query: 79 DFTRMESFGKVEAFADTLVSGLDRSWRRPP--GVAAKLIDCKA----SKGFYYIEYTLQN 132
T E E L +S PP G A+L++ + K +Y +EY ++
Sbjct: 79 GKTLAELGTPTEVGYK-----LSKSAIAPPDSGREAELVNAASREVKGKKYYLLEYAVKL 133
Query: 133 PGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASF 181
P + +H +++ ++ +LYT E +K E V SF
Sbjct: 134 PNQQERHNLASVAVSR----GKLYTFNASTPERRWQKVQKQFESVVDSF 178
>gi|434392011|ref|YP_007126958.1| photosystem II oxygen evolving complex protein PsbP [Gloeocapsa sp.
PCC 7428]
gi|428263852|gb|AFZ29798.1| photosystem II oxygen evolving complex protein PsbP [Gloeocapsa sp.
PCC 7428]
Length = 180
Score = 38.1 bits (87), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 79/186 (42%), Gaps = 27/186 (14%)
Query: 2 FQLAFTACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYP 61
F ++ T+CS +A L+ Y D + +E P W + NG + +
Sbjct: 13 FSVSLTSCS---------SAVSGLKSYVDSTDGYEFLYPNGW-VPVNVSNGPDVV--LHD 60
Query: 62 QEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPP--GVAAKLIDCKA 119
++ +VSVVI+ + P + G L +S PP G A+L++ +
Sbjct: 61 LIETTENVSVVISDV-PQGKTLADLGSPSEVG----YKLGKSAIAPPESGREAELVNAEE 115
Query: 120 ----SKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIE 175
+K +Y +EYT++ P + ++H +++ ++ +L+T E K ++
Sbjct: 116 LATDAKTYYLLEYTVKLPNQQQRHNIASVAVSR----GKLFTFNASTPERRWTKVKPTLD 171
Query: 176 KAVASF 181
V SF
Sbjct: 172 AVVKSF 177
>gi|322420389|ref|YP_004199612.1| hypothetical protein GM18_2892 [Geobacter sp. M18]
gi|320126776|gb|ADW14336.1| hypothetical protein GM18_2892 [Geobacter sp. M18]
Length = 287
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 16/138 (11%)
Query: 28 YTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDF-TRMESF 86
+TD+ KF I+ P W++G E + ++ I A Q AS + + I PDF +
Sbjct: 143 FTDDEAKFSINFPSGWKVGRPENSKYRDIAAI--QTASDGFIRISIQPGNPDFYNDKNAV 200
Query: 87 GKVEAFADTLVSGLDRSWRRPPGV---AAKLIDCKASKGFYYIEYTLQNPGESRKHLFSA 143
K+ FA L+ R P A I+ S GF Y N ++ F
Sbjct: 201 SKLTKFA------LESVQRNSPDAEVYQADRINGITSSGFKYTG-IFVNIKPTKDDYFLV 253
Query: 144 IGMASNGWYNRLYTVTGQ 161
+ + N NR+Y +T
Sbjct: 254 LDLPVN---NRVYHITSH 268
>gi|22299618|ref|NP_682865.1| photosystem II oxygen-evolving complex 23K protein PsbP-like
protein [Thermosynechococcus elongatus BP-1]
gi|22295802|dbj|BAC09627.1| psbP [Thermosynechococcus elongatus BP-1]
Length = 183
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 21/191 (10%)
Query: 1 MFQLAF-TACSFPAIVSYALAANEDLRVYTDELNKFEISIPQDW-QLGAGEPNGFKSITA 58
M Q F TA + ++ +A L+ Y D + +E P+ W Q+ +P
Sbjct: 1 MLQRFFATALAIFVVLLGGCSATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVD----VV 56
Query: 59 FYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGL---DRSWRRPPGVAAKLI 115
F+ ++ +VSVV+ + +E G E D L+ + S R +AA
Sbjct: 57 FHDIIETTENVSVVVNTVAST-KSLEELGSPEEVGDRLLRNIIAPSESGRSSALIAAT-- 113
Query: 116 DCKASKGFYYI-EYTLQNPGE----SRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKY 170
KA YYI EY + PG+ ++H S+I ++ ++YT++ EE K
Sbjct: 114 SQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSR----GKVYTLSVSAPEERWPKV 169
Query: 171 GSNIEKAVASF 181
+ V+SF
Sbjct: 170 EDQFKTIVSSF 180
>gi|218201012|gb|EEC83439.1| hypothetical protein OsI_28915 [Oryza sativa Indica Group]
Length = 244
Score = 37.7 bits (86), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 73/186 (39%), Gaps = 35/186 (18%)
Query: 10 SFPAIVSYALAANEDLRVYTDELNKFEISIPQDWQ--LGAGEPNGFKSITAFYPQEASSS 67
S+P +YA A + TD+ + + P WQ + G+ +K + + S
Sbjct: 78 SWPNPAAYAAEAKKGFLPVTDKKDGYSFLYPFGWQEVVVQGQDKVYKDVI----EPLESV 133
Query: 68 SVSVVITG------LGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKAS- 120
SV+ + T LGP D + L R P KL++ K +
Sbjct: 134 SVNTIPTSKQDIRELGP--------------PDQVAEALIRKVLAAPTQKTKLMEAKEND 179
Query: 121 ---KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKA 177
+ +Y E+T Q P +R H AI +A NG + YT+T E EK +
Sbjct: 180 VDGRTYYTFEFTAQAPNFTR-HALGAIAIA-NG---KFYTLTTGANERRWEKIKDRLHTV 234
Query: 178 VASFRF 183
V SF+
Sbjct: 235 VDSFKI 240
>gi|254415923|ref|ZP_05029680.1| PsbP [Coleofasciculus chthonoplastes PCC 7420]
gi|196177350|gb|EDX72357.1| PsbP [Coleofasciculus chthonoplastes PCC 7420]
Length = 179
Score = 37.0 bits (84), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 21/166 (12%)
Query: 25 LRVYTDELNKFEISIPQDW---QLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFT 81
L+ Y D + +E P W ++ G F+ + + +VSVVI + P+ T
Sbjct: 27 LKSYVDTADGYEFLYPNGWVPIKVTDGPDVVFRDLIE------QTENVSVVINPV-PENT 79
Query: 82 RMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKA----SKGFYYIEYTLQNPGESR 137
+ G L + + V +L+D KA K +Y +EY+++ P ++R
Sbjct: 80 TLTDLGTPGEVGYQLQQNVLSAANSNRQV--ELVDAKARDTGDKTYYLLEYSVKLPSQNR 137
Query: 138 KHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF 183
L +A+ +++LYT+ EE +K + V+SF
Sbjct: 138 HDLATAVIS-----HDKLYTLNASTTEERWDKVQDLFTQVVSSFNV 178
>gi|443716926|gb|ELU08219.1| hypothetical protein CAPTEDRAFT_197539 [Capitella teleta]
Length = 457
Score = 35.8 bits (81), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 54 KSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADT 95
K + + P AS S + ++T +GPD TR S G+ AF+DT
Sbjct: 198 KLVLGYLPSPASDSGAASILTLVGPDSTRRMSRGRYSAFSDT 239
>gi|304445658|pdb|2XB3|A Chain A, The Structure Of Cyanobacterial Psbp
Length = 165
Score = 35.4 bits (80), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 20/171 (11%)
Query: 20 AANEDLRVYTDELNKFEISIPQDW-QLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGP 78
+A L+ Y D + +E P+ W Q+ +P F+ ++ +VSVV+ +
Sbjct: 3 SATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDV----VFHDIIETTENVSVVVNTVA- 57
Query: 79 DFTRMESFGKVEAFADTLVSGL---DRSWRRPPGVAAKLIDCKASKGFYYI-EYTLQNPG 134
+E G E D L+ + S R +AA KA YYI EY + PG
Sbjct: 58 STKSLEELGSPEEVGDRLLRNIIAPSESGRSSALIAAT--SQKADDKTYYILEYAVTLPG 115
Query: 135 E----SRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASF 181
+ ++H S+I ++ ++YT++ EE K + V+SF
Sbjct: 116 DGNTAQQRHNLSSIAVSR----GKVYTLSVSAPEERWPKVEDQFKTIVSSF 162
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,903,209,527
Number of Sequences: 23463169
Number of extensions: 118118307
Number of successful extensions: 260791
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 260692
Number of HSP's gapped (non-prelim): 74
length of query: 184
length of database: 8,064,228,071
effective HSP length: 133
effective length of query: 51
effective length of database: 9,238,593,890
effective search space: 471168288390
effective search space used: 471168288390
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 72 (32.3 bits)