BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030020
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S720|PPD3_ARATH PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis
thaliana GN=PPD3 PE=1 SV=2
Length = 247
Score = 292 bits (747), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 139/187 (74%), Positives = 157/187 (83%), Gaps = 3/187 (1%)
Query: 1 MFQLAFTACSFPAIVSYALA---ANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSIT 57
M Q+A + P +S A A A+E RVYTDE NKFEISIPQDWQ+G EPNGFKSIT
Sbjct: 61 MLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQDWQVGQAEPNGFKSIT 120
Query: 58 AFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDC 117
AFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW++P GV AKLID
Sbjct: 121 AFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQKPVGVTAKLIDS 180
Query: 118 KASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKA 177
+ASKGFYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTGQF +EES + S I+K
Sbjct: 181 RASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDEESAEQSSKIQKT 240
Query: 178 VASFRFI 184
V SFRFI
Sbjct: 241 VKSFRFI 247
>sp|A1AV71|DXR_RUTMC 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Ruthia
magnifica subsp. Calyptogena magnifica GN=dxr PE=3 SV=1
Length = 383
Score = 33.1 bits (74), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%)
Query: 27 VYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESF 86
+++D+ N F +S +WQL N ++ A E+S+ +S +IT + ++
Sbjct: 23 LHSDKFNIFTLSANTNWQLMLELCNKYQPNYAIMVDESSAEKLSTIITTDTQILSGTQAL 82
Query: 87 GKVEAFADT 95
KV A DT
Sbjct: 83 DKVVAHQDT 91
>sp|P82681|TL13_SPIOL Thylakoid lumenal 13.8 kDa protein (Fragment) OS=Spinacia
oleracea PE=1 SV=1
Length = 21
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 12/20 (60%), Positives = 18/20 (90%)
Query: 23 EDLRVYTDELNKFEISIPQD 42
++ RVY+D+ NK++ISIPQD
Sbjct: 2 DEFRVYSDDANKYKISIPQD 21
>sp|Q0CL13|DBP3_ASPTN ATP-dependent RNA helicase dbp3 OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=dbp3 PE=3 SV=1
Length = 493
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 78/203 (38%), Gaps = 37/203 (18%)
Query: 3 QLAFTACSFPAIVSYALAANEDLRVYTDELNKFEISIPQD-----WQLGAGEPNGFKSIT 57
+LA T S P V+ + D R T E+ P + QL G + +
Sbjct: 273 ELASTFMSSPVTVTIGGDPSADPRANTRIKQVVEVVKPHEKEGRLVQLLKQHQRGAEKVL 332
Query: 58 AF--YPQEASS-----SSVSVVITGLGPDFTRMESFGKVEAF---ADTLVSGLDRSWRRP 107
AF Y +EA+ S + G+ D ++ E F ++AF A T++ D
Sbjct: 333 AFCLYKKEATRIERFLQSRGFKVAGIHGDLSQQERFRSLDAFKTGAATVLVATD------ 386
Query: 108 PGVAAKLIDCKASKGFYYIEYTL------QNPGESRK--------HLFSAIGMASNGWYN 153
VAA+ +D A K + + L G + + LF+ A +G
Sbjct: 387 --VAARGLDIPAVKLVINVTFPLTVEDYVHRIGRTGRAGAEGHAITLFTETDKAQSGALI 444
Query: 154 RLYTVTGQFVEEESEKYGSNIEK 176
+ GQ V EE K+G ++K
Sbjct: 445 NVLKAAGQEVPEELLKFGGTVKK 467
>sp|Q8K976|SMG_BUCAP Protein smg OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=smg PE=3 SV=1
Length = 157
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 120 SKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQF 162
SK Y + L+N +K++FS+I ++ N NR+YT +F
Sbjct: 37 SKDIYKALHWLKNLSCCKKNIFSSINLSLNHTTNRIYTKKEEF 79
>sp|Q39219|AOX1A_ARATH Ubiquinol oxidase 1a, mitochondrial OS=Arabidopsis thaliana
GN=AOX1A PE=1 SV=2
Length = 354
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 107 PPGVAAKLIDCKASKGFY----YIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQF 162
P V L+ CK+ + F +I+ L+ R HL + + +A WY R +T Q
Sbjct: 189 PGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVITVQG 248
Query: 163 V 163
V
Sbjct: 249 V 249
>sp|Q8VY52|PPD2_ARATH PsbP domain-containing protein 2, chloroplastic OS=Arabidopsis
thaliana GN=PPD2 PE=1 SV=1
Length = 232
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 13/134 (9%)
Query: 23 EDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTR 82
E+L+ YTD N F + IP + E G ++ F S+++ VV++ +
Sbjct: 73 EELQRYTDSNNGFTLLIPSSYT--KVEKAGANAL--FEELNNGSNNIGVVVSPV--RIKS 126
Query: 83 MESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGF----YYIEYTLQNPGESRK 138
++ FG + AD L++ R+ A+++ G Y EY + + K
Sbjct: 127 LDQFGSPQFVADKLINA---EKRKESTKEAEVVSVGERAGLGQQVYEFEYKIDSTRGGIK 183
Query: 139 HLFSAIGMASNGWY 152
+FSA ++SN Y
Sbjct: 184 RVFSAAFVSSNKLY 197
>sp|Q07185|AOX1_SOYBN Ubiquinol oxidase 1, mitochondrial OS=Glycine max GN=AOX1 PE=1 SV=1
Length = 321
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 107 PPGVAAKLIDCKASKGFYY----IEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQF 162
P VA L+ CK+ + F + + L+ R HL + + +A WY R +T Q
Sbjct: 156 PGMVAGMLLHCKSLRRFEHSGGWFKALLEEAENERMHLMTFMEVAKPKWYERALVITVQG 215
Query: 163 V 163
V
Sbjct: 216 V 216
>sp|Q40578|AOX2_TOBAC Ubiquinol oxidase 2, mitochondrial OS=Nicotiana tabacum GN=AOX2
PE=1 SV=2
Length = 297
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 107 PPGVAAKLIDCKASKGFY----YIEYTLQNPGESRKHLFSAIGMASNGWYNR--LYTVTG 160
P V L+ CK+ + F +I+ L+ R HL + + +A WY R ++ V G
Sbjct: 132 PGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENERMHLMTFMEVAKPNWYERALVFAVQG 191
Query: 161 QFV 163
F+
Sbjct: 192 VFI 194
>sp|A0JN80|DI3L1_BOVIN DIS3-like exonuclease 1 OS=Bos taurus GN=DIS3L PE=2 SV=2
Length = 1053
Score = 30.0 bits (66), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 105 RRPPGVA---AKLIDCKASKGFYY-------IEYTLQNPGESRKHLFSAI--GMASNGWY 152
R PP ++L +C +KGF+ + +L N + + + + MA+
Sbjct: 708 RHPPPHQEFFSELRECAKAKGFFIDTRSNKALADSLDNANDPNDPIVNKLLRSMATQAMS 767
Query: 153 NRLYTVTGQFVEEESEKYGSNIEK 176
N LY TG EEE YG ++K
Sbjct: 768 NALYFSTGSCAEEEFHHYGLALDK 791
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,178,287
Number of Sequences: 539616
Number of extensions: 2748875
Number of successful extensions: 6153
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 6148
Number of HSP's gapped (non-prelim): 14
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)