Query 030020
Match_columns 184
No_of_seqs 108 out of 125
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 07:16:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030020.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030020hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00059 PsbP domain-containin 100.0 2.4E-50 5.2E-55 347.2 17.2 158 17-184 101-285 (286)
2 PF01789 PsbP: PsbP; InterPro 100.0 1.4E-42 3E-47 281.7 13.6 161 12-183 10-174 (175)
3 PLN00042 photosystem II oxygen 100.0 5.3E-39 1.2E-43 276.4 17.1 147 23-183 90-259 (260)
4 PLN00067 PsbP domain-containin 100.0 1.4E-34 3E-39 248.9 14.1 141 31-183 103-263 (263)
5 PLN00066 PsbP domain-containin 100.0 1.6E-31 3.4E-36 231.0 15.0 145 23-184 90-259 (262)
6 PLN03152 hypothetical protein; 99.9 5E-27 1.1E-31 198.4 14.4 140 31-184 82-241 (241)
7 PF08786 DUF1795: Domain of un 97.7 0.0012 2.7E-08 50.6 12.7 122 36-181 3-130 (130)
8 PF10738 Lpp-LpqN: Probable li 96.4 0.14 3.1E-06 42.4 13.0 133 35-183 33-173 (175)
9 COG5435 Uncharacterized conser 93.6 3.4 7.3E-05 33.7 12.7 124 36-183 10-141 (147)
10 PF12712 DUF3805: Domain of un 76.6 40 0.00087 27.5 10.2 84 26-130 2-86 (153)
11 COG4784 Putative Zn-dependent 71.2 16 0.00035 34.2 7.0 24 26-49 288-311 (479)
12 PRK11615 hypothetical protein; 60.9 1E+02 0.0022 26.1 13.3 137 26-183 41-184 (185)
13 PF08006 DUF1700: Protein of u 47.3 10 0.00022 30.6 1.3 20 81-100 45-64 (181)
14 PF07174 FAP: Fibronectin-atta 42.6 15 0.00034 32.9 1.7 137 25-170 109-273 (297)
15 COG4290 Guanyl-specific ribonu 39.8 25 0.00054 28.6 2.3 25 123-147 104-128 (152)
16 cd00607 RNase_Sa RNase_Sa. Rib 30.4 82 0.0018 23.9 3.7 27 109-135 30-61 (95)
17 PF07526 POX: Associated with 28.9 30 0.00065 27.7 1.2 28 154-182 81-108 (140)
18 PF15508 NAAA-beta: beta subun 24.6 55 0.0012 23.9 1.9 19 155-173 5-24 (95)
19 PF12299 DUF3627: Protein of u 21.6 73 0.0016 23.0 2.0 47 130-180 13-62 (88)
20 smart00574 POX domain associat 20.4 54 0.0012 26.6 1.2 23 161-183 87-109 (140)
No 1
>PLN00059 PsbP domain-containing protein 1; Provisional
Probab=100.00 E-value=2.4e-50 Score=347.16 Aligned_cols=158 Identities=21% Similarity=0.369 Sum_probs=141.2
Q ss_pred HhhhhccCceeeEeCCCCeEEEccCCcee--cccCCCCcceEEEecCCCCCCceEEEEEecCCC-CccccccCCChHHHH
Q 030020 17 YALAANEDLRVYTDELNKFEISIPQDWQL--GAGEPNGFKSITAFYPQEASSSSVSVVITGLGP-DFTRMESFGKVEAFA 93 (184)
Q Consensus 17 ~a~a~~~g~~~y~D~~dGy~f~yP~~W~~--~~g~~sg~k~v~~f~p~~~~~~NVsVvispv~~-df~~l~~fG~p~eva 93 (184)
.|+|...||++|+|+.|||+|+||+||+. +.|+| ++|+|+++.+|||||+|+|+++ ++++|++||+|+|||
T Consensus 101 ~a~a~~~~l~~y~D~~DGY~FlYP~GWi~V~~~G~D------VvFrD~Ie~~ENVSV~ISs~sss~~~sLeDLGsP~eVg 174 (286)
T PLN00059 101 TAFASIPVFREYIDTFDGYSFKYPQNWIQVRGAGAD------IFFRDPVVLDENLSVEFSSPSSSKYTSLEDLGSPEEVG 174 (286)
T ss_pred hhhcCCcccceeEcCCCCeEEeCCCCCeEeccCCCc------eEEeccCccccceEEEEecCCcccCCChHHcCCHHHHH
Confidence 47778889999999999999999999994 45667 8999999999999999998864 678999999999999
Q ss_pred HHHHhcccccc---CCCCCCeeEEEeceec-----CceEEEEEEEeCCC----------------CcceeEEEEEEeecC
Q 030020 94 DTLVSGLDRSW---RRPPGVAAKLIDCKAS-----KGFYYIEYTLQNPG----------------ESRKHLFSAIGMASN 149 (184)
Q Consensus 94 ~~Lv~~~~r~~---~~~~~~~a~Lida~~r-----~~yY~~EY~v~~p~----------------~~~Rh~ls~v~v~~~ 149 (184)
++|+++++.++ +.+++|+++||+|.+| +.||+|||++++|+ ++.||++|+|+|.|
T Consensus 175 erLlkqvLa~f~str~GsgReaeLVsA~~Re~~DGktYY~lEY~Vks~~~~n~~~~~~qdr~~~~~w~RH~LA~v~V~n- 253 (286)
T PLN00059 175 KRVLRQYLTEFMSTRLGVKREANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLGVEN- 253 (286)
T ss_pred HHHHHHHhcccccccCCCCcceEEEEeeeEEccCCcEEEEEEEEEEcCcccccccccccccccccccceeeEEEEEEeC-
Confidence 99999998543 2346899999999999 34999999999962 23899999999998
Q ss_pred CccceEEEEEcccCchhhHHHHHHHHHhhcceeeC
Q 030020 150 GWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 184 (184)
Q Consensus 150 G~~~rLYTlt~q~~E~rw~k~~~~l~~vv~SF~v~ 184 (184)
||||||++|+||+||+|++++|++|++||+|+
T Consensus 254 ---GkLYTL~~qtpE~RW~kvk~~f~~V~dSF~V~ 285 (286)
T PLN00059 254 ---DRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVE 285 (286)
T ss_pred ---CEEEEEEcCCcHHHHHHHHHHHHHHHhheeec
Confidence 59999999999999999999999999999985
No 2
>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.
Probab=100.00 E-value=1.4e-42 Score=281.67 Aligned_cols=161 Identities=31% Similarity=0.480 Sum_probs=131.5
Q ss_pred hhhhhHhhhhccCceeeEeCCCCeEEEccCCceecccCCCCcceEEEecCCCCCCceEEEEEecCCCCccccccCCChHH
Q 030020 12 PAIVSYALAANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEA 91 (184)
Q Consensus 12 ~~~~~~a~a~~~g~~~y~D~~dGy~f~yP~~W~~~~g~~sg~k~v~~f~p~~~~~~NVsVvispv~~df~~l~~fG~p~e 91 (184)
++++..+.....||++|.|+.+||+|.||+||...++ +| ..++|+|+...++||+|+|+|++.++ +|++||+|++
T Consensus 10 ~~~~~~~~~~~~~~~~y~d~~~~y~f~~P~gW~~~~~--~G--~~v~f~d~~~~~~nvsV~v~p~~~~~-sl~~lGs~~~ 84 (175)
T PF01789_consen 10 SANVACAAEASTGFQPYTDSDDGYSFLYPSGWEEVDV--SG--ADVVFRDPIDADENVSVVVSPVPKDF-SLEDLGSPEE 84 (175)
T ss_dssp ------STT--SSEEEEEECTTTEEEEEETTEEEEES--TT--EEEEEEETTETTSEEEEEEEE-STS--SGGGG-SHHH
T ss_pred cchhhhcccCCCCceEEEcCCCCEEEECCCCCeecCC--CC--eEEEEECcccccceEEEEEEecCCcC-chhhcCCHHH
Confidence 3333333444589999999999999999999995543 12 23789999999999999999999887 9999999999
Q ss_pred HHHHHHhccccccCCCCCCeeEEEeceec----CceEEEEEEEeCCCCcceeEEEEEEeecCCccceEEEEEcccCchhh
Q 030020 92 FADTLVSGLDRSWRRPPGVAAKLIDCKAS----KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEES 167 (184)
Q Consensus 92 va~~Lv~~~~r~~~~~~~~~a~Lida~~r----~~yY~~EY~v~~p~~~~Rh~ls~v~v~~~G~~~rLYTlt~q~~E~rw 167 (184)
||++|++..+++ ...++.++||++.+| +.||+|||+++.|++..||.+++++|.+ ||||||++|+||+||
T Consensus 85 va~~l~~~~~~~--~~~~~~a~li~a~~~~~~g~~yY~~Ey~~~~~~~~~rh~l~~~tv~~----g~lY~l~~~a~e~~w 158 (175)
T PF01789_consen 85 VAERLLNGELAS--PGSGREAELISASEREVDGKTYYEYEYTVQSPNEGRRHNLAVVTVKN----GKLYTLTAQAPESRW 158 (175)
T ss_dssp HHHHHHHHCCCH--CTSSEEEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEET----TEEEEEEEEEEHHHH
T ss_pred HHHHHhhhhccc--ccCCcceEEEEeeeeecCCccEEEEEEEeccCCCcccEEEEEEEEEC----CEEEEEEEEcCHHHH
Confidence 999999987643 223499999999999 3499999999999856899999999985 499999999999999
Q ss_pred HHHHHHHHHhhcceee
Q 030020 168 EKYGSNIEKAVASFRF 183 (184)
Q Consensus 168 ~k~~~~l~~vv~SF~v 183 (184)
+|+++.|++|++||+|
T Consensus 159 ~k~~~~l~~iv~SF~v 174 (175)
T PF01789_consen 159 DKVEPKLRKIVDSFRV 174 (175)
T ss_dssp HTCHHHHHHHHHC-EE
T ss_pred HHHHHHHHHHHhcEEe
Confidence 9999999999999997
No 3
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=100.00 E-value=5.3e-39 Score=276.41 Aligned_cols=147 Identities=20% Similarity=0.318 Sum_probs=123.5
Q ss_pred cCceeeEeCCCCeEEEccCCceec-----ccCCCCcceEEEecCCCCCCceEEEEEecCCCCccccccCCChHH----HH
Q 030020 23 EDLRVYTDELNKFEISIPQDWQLG-----AGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEA----FA 93 (184)
Q Consensus 23 ~g~~~y~D~~dGy~f~yP~~W~~~-----~g~~sg~k~v~~f~p~~~~~~NVsVvispv~~df~~l~~fG~p~e----va 93 (184)
.||..|.| |||+|+||++|+.+ .|++ ++|+|.++.++||||+|+|+ ++++|+|||+|+| |+
T Consensus 90 ~gF~~y~~--dgY~FlyP~~W~~~ke~~~~G~d------v~f~D~~~~~eNVSV~Ispt--~k~sI~dlGsPee~l~~vg 159 (260)
T PLN00042 90 TGFLPYNG--DGFKLLVPSKWNPSKEREFPGQV------LRFEDNFDATSNLSVMVTPT--DKKSITDYGSPEEFLSKVS 159 (260)
T ss_pred CCCeEeeC--CCeEEecCCCCccccccccCCce------EEeeccccccccEEEEEecC--CcCCHhhcCCHHHHHHHHH
Confidence 69999975 99999999999833 2554 78999999999999999998 4589999999999 77
Q ss_pred HHHHhcccccc-CCC----CC--CeeEEEeceec----CceEEEEEEEeCCC--CcceeEEEEEEeecCCccceEEEEEc
Q 030020 94 DTLVSGLDRSW-RRP----PG--VAAKLIDCKAS----KGFYYIEYTLQNPG--ESRKHLFSAIGMASNGWYNRLYTVTG 160 (184)
Q Consensus 94 ~~Lv~~~~r~~-~~~----~~--~~a~Lida~~r----~~yY~~EY~v~~p~--~~~Rh~ls~v~v~~~G~~~rLYTlt~ 160 (184)
+.|.+++.... ..+ |+ .+|+||++++| +.||+|||.+++|+ ++.||+|++++|.+ ||||||++
T Consensus 160 ylL~kq~~a~~t~s~~Gf~p~~vata~Lleas~re~dGk~YY~lE~~~~~ad~d~~~RH~LatatV~~----GkLYtl~a 235 (260)
T PLN00042 160 YLLGKQAYSGETASEGGFDANAVATAAVLESSTQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVSD----GKLYICKA 235 (260)
T ss_pred HHHHhhhccCccccccCcCcccccceeEEEeeeEEeCCeEEEEEEEEEecCCCCCCCceEEEEEEEEC----CEEEEEEe
Confidence 77777654211 011 22 27899999999 45999999999986 35799999999986 59999999
Q ss_pred ccCchhhHHH-HHHHHHhhcceee
Q 030020 161 QFVEEESEKY-GSNIEKAVASFRF 183 (184)
Q Consensus 161 q~~E~rw~k~-~~~l~~vv~SF~v 183 (184)
|+||+||.|+ ++.|++|++||+|
T Consensus 236 qa~EkRW~K~~~k~l~~v~~SFsV 259 (260)
T PLN00042 236 QAGDKRWFKGARKFVEGAASSFSV 259 (260)
T ss_pred cCchhhhhHHHHHHHHHHHhceec
Confidence 9999999998 6689999999997
No 4
>PLN00067 PsbP domain-containing protein 6; Provisional
Probab=100.00 E-value=1.4e-34 Score=248.95 Aligned_cols=141 Identities=15% Similarity=0.210 Sum_probs=118.5
Q ss_pred CCCCeEEEccCCceec--ccCCCCc----c-----eEEEecCCCCCCceEEEEEecCC-----CCccccccCCChHHHHH
Q 030020 31 ELNKFEISIPQDWQLG--AGEPNGF----K-----SITAFYPQEASSSSVSVVITGLG-----PDFTRMESFGKVEAFAD 94 (184)
Q Consensus 31 ~~dGy~f~yP~~W~~~--~g~~sg~----k-----~v~~f~p~~~~~~NVsVvispv~-----~df~~l~~fG~p~eva~ 94 (184)
.-.||+|+||+||... .+..+|. | -.++|++ +.++||||||+|+. ++ ++|+|||+|++|++
T Consensus 103 ~i~gY~FlyP~gW~~v~Vs~~~sGnycqp~c~~p~~dv~F~D--~~dgnVSVIVSPV~r~t~k~~-~sIeDlGsPeeVl~ 179 (263)
T PLN00067 103 NVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFED--EKQGKVQVVASPLIRLTNKPN-ATIEEIGSPEKLIA 179 (263)
T ss_pred CcccceEeCCCCCcCccccccccCccccccccCCCceEEEeC--CCCCCEEEEEecccccccCCC-CChHHccCHHHHHH
Confidence 3469999999999922 2111121 0 1278998 55889999999984 34 69999999999999
Q ss_pred HHHhccccccCCCCCCeeEEEeceec----CceEEEEEEEeCCCCcceeEEEEEEeecCCccceEEEEEcccCchhhHHH
Q 030020 95 TLVSGLDRSWRRPPGVAAKLIDCKAS----KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKY 170 (184)
Q Consensus 95 ~Lv~~~~r~~~~~~~~~a~Lida~~r----~~yY~~EY~v~~p~~~~Rh~ls~v~v~~~G~~~rLYTlt~q~~E~rw~k~ 170 (184)
+|.+.+. .++++.++||++++| +.||+|||.+..++. .||+|+++++.+ |||||+++|+||+||.|+
T Consensus 180 ~Lg~~v~----g~~~~~~eLLeAs~re~dGktYY~~E~~tp~a~~-gRHnLataTV~~----GkLYtf~asanEkRW~K~ 250 (263)
T PLN00067 180 SLGPFVT----GNSYDPDELLETSVEKIGDQTYYKYVLETPFALT-GSHNLAKATAKG----NTVVLFVVSASDKQWQSS 250 (263)
T ss_pred HhhHHhh----cCCCCCcceEEeeeEeeCCeEEEEEEEEecCCCC-CceEEEEEEEEC----CEEEEEEecCCHHHHHHH
Confidence 9998876 568899999999999 459999999999985 799999988865 599999999999999999
Q ss_pred HHHHHHhhcceee
Q 030020 171 GSNIEKAVASFRF 183 (184)
Q Consensus 171 ~~~l~~vv~SF~v 183 (184)
++.|++|++||+|
T Consensus 251 k~~l~~V~dSFsV 263 (263)
T PLN00067 251 EKTLKAILDSFQA 263 (263)
T ss_pred HHHHHHHHHhccC
Confidence 9999999999986
No 5
>PLN00066 PsbP domain-containing protein 4; Provisional
Probab=99.97 E-value=1.6e-31 Score=231.05 Aligned_cols=145 Identities=17% Similarity=0.259 Sum_probs=120.0
Q ss_pred cCceeeEeCC-------------CCeEEEccCCceec--ccCCCCcceEEEecCCCCCCceEEEEEecCC------CCcc
Q 030020 23 EDLRVYTDEL-------------NKFEISIPQDWQLG--AGEPNGFKSITAFYPQEASSSSVSVVITGLG------PDFT 81 (184)
Q Consensus 23 ~g~~~y~D~~-------------dGy~f~yP~~W~~~--~g~~sg~k~v~~f~p~~~~~~NVsVvispv~------~df~ 81 (184)
.|++.|.-+. ..|+|+||+||+.. ...+.|--. +.++.....++||+|+|+|++ .+.+
T Consensus 90 ~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~yP~GW~ev~VS~~d~gg~~-vd~Rf~~~~~~nvsVvVspv~rla~~~~~~~ 168 (262)
T PLN00066 90 NGWRTYRRPEGKSGGHGVGWSEITPYSFKVPQGWEEVPVSIADLGGTE-IDLRFASDKEGRLKVVVAPVLRFADNLGDNA 168 (262)
T ss_pred cceEEEecCccccCcCCCCccccCCeEEECCCCCeEeecccccCCCCc-eEEEeccCCCccEEEEEeccccccccccCCC
Confidence 5899998765 57999999999932 111111111 455555678999999999985 2557
Q ss_pred ccccCCChHHHHHHHHhccccccCCCCCCeeEEEeceec----CceEEEEEEEeCCCCcceeEEEEEEeecCCccceEEE
Q 030020 82 RMESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKAS----KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYT 157 (184)
Q Consensus 82 ~l~~fG~p~eva~~Lv~~~~r~~~~~~~~~a~Lida~~r----~~yY~~EY~v~~p~~~~Rh~ls~v~v~~~G~~~rLYT 157 (184)
+|++||+|++|+++|.+.++ .++.++++||++.++ +.||.||| .||+|++++|.+ |||||
T Consensus 169 sI~dLGspeeVi~~l~~~v~----g~~~~e~eLl~a~~re~dGktYY~~E~--------~rH~LasaTV~~----GrLYt 232 (262)
T PLN00066 169 TIEEIGPPEKVISGFGPELI----GEPVEEGKVLSMEVAEHSGRTYYQFEL--------PPHTLVTATAAG----NRVYI 232 (262)
T ss_pred ChHHcCCHHHHHHHHHHHhc----CCCccccceeEeeeeecCCcEEEEEEE--------eCceEEEEEEEC----CEEEE
Confidence 99999999999999999875 556789999999998 46999999 289999999986 59999
Q ss_pred EEcccCchhhHHHHHHHHHhhcceeeC
Q 030020 158 VTGQFVEEESEKYGSNIEKAVASFRFI 184 (184)
Q Consensus 158 lt~q~~E~rw~k~~~~l~~vv~SF~v~ 184 (184)
|++|+||+||.|++++|++|++||+|+
T Consensus 233 ~~asape~rW~k~~~~lr~v~dSF~V~ 259 (262)
T PLN00066 233 FSVTANGLQWKRHYKDLKRIAKSFRVV 259 (262)
T ss_pred EEeecchHhhHHHHHHHHHHhhceeee
Confidence 999999999999999999999999985
No 6
>PLN03152 hypothetical protein; Provisional
Probab=99.95 E-value=5e-27 Score=198.42 Aligned_cols=140 Identities=17% Similarity=0.270 Sum_probs=106.9
Q ss_pred CCCCeEEEccCCceecc------------cCCCCcceEEEecCCCCCCceEEEEEecCC------CCccccccCCChHHH
Q 030020 31 ELNKFEISIPQDWQLGA------------GEPNGFKSITAFYPQEASSSSVSVVITGLG------PDFTRMESFGKVEAF 92 (184)
Q Consensus 31 ~~dGy~f~yP~~W~~~~------------g~~sg~k~v~~f~p~~~~~~NVsVvispv~------~df~~l~~fG~p~ev 92 (184)
-.+||++-||-++...- |..+--|.+.+=+.....+|||||+|+|++ -+-++|.|||+|+||
T Consensus 82 ~g~gf~~~~pp~f~di~e~~~~~~g~~~yg~~akp~~~~aRf~s~D~sEnVSVVIspv~~LK~tfle~kDLtDLGsp~EV 161 (241)
T PLN03152 82 YGDGFSIRVPPSFEDIMEPEDYNAGLSLYGDKAKPRTFAARFASPDGSEVLSVVIRPSNQLKITFLEAKDITDLGSLKEA 161 (241)
T ss_pred hCCceEEeCCCChhhhcChhhcccccceecCCCCCcceeeeecCCCCCceEEEEEecCccccccccccCChhHcCCHHHH
Confidence 36899999999998321 222223335566666778999999999997 244899999999999
Q ss_pred HHHHHhccccccCCCCCCeeEEEeceec--CceEEEEEEEeCCCCcceeEEEEEEeecCCccceEEEEEcccCchhhHHH
Q 030020 93 ADTLVSGLDRSWRRPPGVAAKLIDCKAS--KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKY 170 (184)
Q Consensus 93 a~~Lv~~~~r~~~~~~~~~a~Lida~~r--~~yY~~EY~v~~p~~~~Rh~ls~v~v~~~G~~~rLYTlt~q~~E~rw~k~ 170 (184)
|+.++..-. ..-.++.++| ..+. ++||.|||.++ .||.|++|+|.+ |||||+++|++|+||+|+
T Consensus 162 gkv~vP~g~---~~~saR~iel--~~E~dGKtYY~lEy~v~-----~RH~LaTVaVsr----GKLYTl~aSt~EkRW~Kv 227 (241)
T PLN03152 162 AKIFVPGGA---TLYSARTIKV--KEEEGIRTYYFYEFGRD-----EQHVALVATVNS----GKAYIAGATAPESKWDDD 227 (241)
T ss_pred HHhhCCCcc---cccccceeee--eeecCCceeEEEEEEeC-----CcEEEEEEEEcC----CeEEEEecCCchhchHHH
Confidence 977652200 0002444554 2233 67999999986 599999999987 599999999999999999
Q ss_pred HHHHHHhhcceeeC
Q 030020 171 GSNIEKAVASFRFI 184 (184)
Q Consensus 171 ~~~l~~vv~SF~v~ 184 (184)
+++|+++++||+|+
T Consensus 228 k~kfr~aa~SFsV~ 241 (241)
T PLN03152 228 GVKLRSAAISLTVL 241 (241)
T ss_pred HHHHHHHHhheeeC
Confidence 99999999999986
No 7
>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function. It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.
Probab=97.74 E-value=0.0012 Score=50.60 Aligned_cols=122 Identities=16% Similarity=0.224 Sum_probs=76.3
Q ss_pred EEEccCCceecccCCCCcceEEEecCCC--CCCceEEEEEecCCCCccccccCCChHHHHHHHHhccccccCCCCCCeeE
Q 030020 36 EISIPQDWQLGAGEPNGFKSITAFYPQE--ASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAK 113 (184)
Q Consensus 36 ~f~yP~~W~~~~g~~sg~k~v~~f~p~~--~~~~NVsVvispv~~df~~l~~fG~p~eva~~Lv~~~~r~~~~~~~~~a~ 113 (184)
+|.-|.+|+.-. +.+|.++. ....|+.|.-.+++++ .+.++..++.++.+-+ --..-+
T Consensus 3 ~~~lP~~~~D~t--------~nv~~~~~~~~~~~slvIsR~~l~~g-------~tl~~~~~~q~~~l~~-----~l~~~~ 62 (130)
T PF08786_consen 3 SLTLPDGWQDRT--------MNVLVLPDSGGSGPSLVISRDPLPDG-------ETLEDYLQRQLAQLRK-----QLPGFQ 62 (130)
T ss_dssp EEEEETTSEE----------BEEEEE--BTTB-EEEEEEEE---TT-------S-HHHHHHHHHHHHHC-----CSTT-E
T ss_pred eEeCCCcceece--------EEEEEccCCCCCcceEEEEeccCCCC-------CCHHHHHHHHHHHHHh-----hCCCcE
Confidence 466799998532 24554443 3355555555566555 3677888888887632 122344
Q ss_pred EEeceec----CceEEEEEEEeCCCCcceeEEEEEEeecCCccceEEEEEcccCchhhHHHHHHHHHhhcce
Q 030020 114 LIDCKAS----KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASF 181 (184)
Q Consensus 114 Lida~~r----~~yY~~EY~v~~p~~~~Rh~ls~v~v~~~G~~~rLYTlt~q~~E~rw~k~~~~l~~vv~SF 181 (184)
+++...- ..-+.+||+-..++. .-|-.-++..-.+ +++++||..++..-.+..++.++++++||
T Consensus 63 ~~~~~~~~l~~~~a~~l~~~~~~~g~-~v~Q~q~~~~~~~---~~~l~~T~t~~~~~~~~~~~~~~~i~~Sf 130 (130)
T PF08786_consen 63 LVERQPITLGGRPARELEYSFRSGGQ-PVYQRQAAVLLPG---RRVLVFTYTAPGPFTEEQRAHWEAILKSF 130 (130)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETTC-EEEEEEEEEEEC----CCEEEEEEEEECCCHHHHHHHHHHHHCT-
T ss_pred EEeeEEEEeCCCCeEEEEEEEeeCCE-EEEEEEEEEEECC---CEEEEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 5544333 247889999998875 4455555444332 59999999999999999999999999998
No 8
>PF10738 Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR019674 This protein is conserved in Mycobacteriaceae and is likely to be a lipoprotein [].
Probab=96.35 E-value=0.14 Score=42.37 Aligned_cols=133 Identities=17% Similarity=0.214 Sum_probs=81.9
Q ss_pred eEEEccCCceeccc-CCCCcceEEEecCC-CCCCceEEEEEecCCCCccccccCCChHHHHHHHHhccccccCCCCCCee
Q 030020 35 FEISIPQDWQLGAG-EPNGFKSITAFYPQ-EASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAA 112 (184)
Q Consensus 35 y~f~yP~~W~~~~g-~~sg~k~v~~f~p~-~~~~~NVsVvispv~~df~~l~~fG~p~eva~~Lv~~~~r~~~~~~~~~a 112 (184)
-++-.|.||+.... ..+..-.+++.... ..-.-|+-|+++.+..+| +|+|+.+.=-..+ +.-|+-+
T Consensus 33 v~lP~P~GW~~~~~~~~~~a~~vi~~~~~~~~~~Pnavv~V~kL~G~~-------Dp~e~l~~a~~d~----~~l~g~~- 100 (175)
T PF10738_consen 33 VSLPTPPGWEPAPDPNPPWAYAVIVDPQADGGFPPNAVVTVSKLTGDF-------DPAEALEHAPADA----QNLPGFR- 100 (175)
T ss_pred EeccCCcCcccCCCCCCCceEEEEEeccccCCCCCceEEEEEeccCCC-------CHHHHHHhchhhH----hhCcCcc-
Confidence 46778999995432 22233344555542 233789999998886666 4666655322221 1223433
Q ss_pred EEEeceec--Cc--eEEEEEEEeCCCCcceeEEEE--EEeecCCccceEEEEEcccCchhhHHHHHHHHHhhcceee
Q 030020 113 KLIDCKAS--KG--FYYIEYTLQNPGESRKHLFSA--IGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF 183 (184)
Q Consensus 113 ~Lida~~r--~~--yY~~EY~v~~p~~~~Rh~ls~--v~v~~~G~~~rLYTlt~q~~E~rw~k~~~~l~~vv~SF~v 183 (184)
-+++..- +| -+.+|-+-+.++ .+||...- |.-+.+++| |..||+++.+..-....+..+.|++.|+|
T Consensus 101 -~~~~s~~~~~GfpS~~i~GtY~~~g-~~~~~~~r~VV~~~~~~~Y--lvqltvt~~~~qa~~~~~a~~aI~~g~~I 173 (175)
T PF10738_consen 101 -ELDGSPSDFSGFPSSQIEGTYDKDG-MRLHTSQRTVVIPGDDQRY--LVQLTVTTTADQAVALADATEAIDEGFTI 173 (175)
T ss_pred -cccCCccccCCCceeEEEEEEeeCC-EEeEeEEEEEEEeCCCcEE--EEEEEeeccccchhhhhhHHHHHHcCCEe
Confidence 3333222 45 377885555555 34555443 333345544 88999999999999999999999999997
No 9
>COG5435 Uncharacterized conserved protein [Function unknown]
Probab=93.55 E-value=3.4 Score=33.66 Aligned_cols=124 Identities=19% Similarity=0.323 Sum_probs=77.2
Q ss_pred EEEccCCceecccCCCCcceEEEecCCCCCCceEEEEEe--cCCCCccccccCCChHHHHHHHHhccccccCCCCCCeeE
Q 030020 36 EISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVIT--GLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPGVAAK 113 (184)
Q Consensus 36 ~f~yP~~W~~~~g~~sg~k~v~~f~p~~~~~~NVsVvis--pv~~df~~l~~fG~p~eva~~Lv~~~~r~~~~~~~~~a~ 113 (184)
+|.-|..|+.- +|-+|--........|.+|| ++.++ . +-.++.++.|..+-+. . |+- +
T Consensus 10 ~l~lP~~w~Dr--------SvNvf~~~~~gt~~~sfvIsRd~~~~g-~------~~~~y~~rql~~l~k~--L-pgy--~ 69 (147)
T COG5435 10 TLELPAAWQDR--------SVNVFVSGDNGTSGFSFVISRDPLEPG-D------TFPEYVQRQLALLRKQ--L-PGY--E 69 (147)
T ss_pred eEcCcchhccc--------eEEEEEecCCCcceeEEEEecCCCCCC-C------cHHHHHHHHHHHHHhh--C-CCe--E
Confidence 46788888832 23344444444566777776 55444 2 3356677777665321 1 222 2
Q ss_pred EEeceec----CceEEEEEEEeCC-CCcceeEEEE-EEeecCCccceEEEEEcccCchhhHHHHHHHHHhhcceee
Q 030020 114 LIDCKAS----KGFYYIEYTLQNP-GESRKHLFSA-IGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF 183 (184)
Q Consensus 114 Lida~~r----~~yY~~EY~v~~p-~~~~Rh~ls~-v~v~~~G~~~rLYTlt~q~~E~rw~k~~~~l~~vv~SF~v 183 (184)
|....+- .---..||.-..| .+ .|.+... +.+.++ .++-++|+.+|-.--++-+....++|.||..
T Consensus 70 ~~~~~e~~v~~~aa~~~~y~w~~~~~~-~r~v~q~~~~i~~g---~~vLifT~Tt~~~ftp~q~~~~~~~I~Sf~p 141 (147)
T COG5435 70 LHHRREIEVGGAAAPLLDYQWTSPEGE-QRRVQQRQVFIERG---DTVLIFTLTTPGEFTPSQKKAWEQVIQSFVP 141 (147)
T ss_pred EeeccccccCccccceeEEEeecCCCC-CceEEEEEeecccC---CeEEEEEecCCCCCCHHHHHHHHHHHHhcCC
Confidence 2222222 1245677777775 33 3444444 456554 6999999999999999999999999999974
No 10
>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown. In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.
Probab=76.57 E-value=40 Score=27.51 Aligned_cols=84 Identities=17% Similarity=0.192 Sum_probs=40.9
Q ss_pred eeeEeCCCCeEEEccCCcee-cccCCCCcceEEEecCCCCCCceEEEEEecCCCCccccccCCChHHHHHHHHhcccccc
Q 030020 26 RVYTDELNKFEISIPQDWQL-GAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSW 104 (184)
Q Consensus 26 ~~y~D~~dGy~f~yP~~W~~-~~g~~sg~k~v~~f~p~~~~~~NVsVvispv~~df~~l~~fG~p~eva~~Lv~~~~r~~ 104 (184)
+.|+.+..=|+..||.+|-. .+|+++ ..|+.+..=.-|..+.. . + =++-+-+.++...-++.
T Consensus 2 kKfiSpg~WFS~~YP~~W~EfED~E~s-----flFYnp~~WTGNfRISa--y----k-~~~~~ygk~~i~~EL~e----- 64 (153)
T PF12712_consen 2 KKFISPGAWFSMEYPADWNEFEDGEGS-----FLFYNPDQWTGNFRISA--Y----K-GGSAQYGKECIRQELKE----- 64 (153)
T ss_dssp EEEE-GGG-EEEEE-TT-EEE---TTE-----EEEE-SSS---EEEEEE--E----E---STTHHHHHHHHHHHH-----
T ss_pred CcccCCCceEEEecCCCcchhccCCcc-----eEEEChHHhcCceEEEE--E----e-cccccchHHHHHHHHHh-----
Confidence 56888888899999999973 345443 68888876677776654 2 1 12222344444444443
Q ss_pred CCCCCCeeEEEeceecCceEEEEEEE
Q 030020 105 RRPPGVAAKLIDCKASKGFYYIEYTL 130 (184)
Q Consensus 105 ~~~~~~~a~Lida~~r~~yY~~EY~v 130 (184)
+..|+++....-+.-|.-|---
T Consensus 65 ----n~~a~~vkvg~~~caYs~E~f~ 86 (153)
T PF12712_consen 65 ----NPSAKLVKVGNWECAYSKEMFQ 86 (153)
T ss_dssp -----TT-EEEEETTEEEEEEEEEEE
T ss_pred ----CCCcceEEeccEEEEEEhhhhh
Confidence 2336666665555555555433
No 11
>COG4784 Putative Zn-dependent protease [General function prediction only]
Probab=71.23 E-value=16 Score=34.16 Aligned_cols=24 Identities=4% Similarity=0.274 Sum_probs=20.5
Q ss_pred eeeEeCCCCeEEEccCCceecccC
Q 030020 26 RVYTDELNKFEISIPQDWQLGAGE 49 (184)
Q Consensus 26 ~~y~D~~dGy~f~yP~~W~~~~g~ 49 (184)
|.|.-++-|++|.||.||+.++..
T Consensus 288 q~FlH~~Lg~tf~~P~Gf~IdN~~ 311 (479)
T COG4784 288 QTFLHPELGVTFDVPDGFKIDNSA 311 (479)
T ss_pred cceeccccceEEecCCceEecCch
Confidence 568889999999999999977644
No 12
>PRK11615 hypothetical protein; Provisional
Probab=60.90 E-value=1e+02 Score=26.06 Aligned_cols=137 Identities=16% Similarity=0.267 Sum_probs=83.3
Q ss_pred eeeEeCCCCeEEEccCCceecccCCCCcc--eEEEecCCCCCCceEE-EEEecCCCCccccccCCChHHHHHHHHhcccc
Q 030020 26 RVYTDELNKFEISIPQDWQLGAGEPNGFK--SITAFYPQEASSSSVS-VVITGLGPDFTRMESFGKVEAFADTLVSGLDR 102 (184)
Q Consensus 26 ~~y~D~~dGy~f~yP~~W~~~~g~~sg~k--~v~~f~p~~~~~~NVs-Vvispv~~df~~l~~fG~p~eva~~Lv~~~~r 102 (184)
+...=-..+.+|.-|.|+....|+. |.. +..+|-+ ....-+- |+..+- +=+. .+..+.+|+.+. |
T Consensus 41 q~VSLLdGKl~FtLPag~sdqsgk~-Gtq~nn~~vYad--~tg~kavIVi~gD~-----~~~~---Ld~la~rl~~qQ-r 108 (185)
T PRK11615 41 QPVSLLDGKLSFTLPADMSDQSGKL-GTQANNMHVYAD--ATGQKAVIVILGDD-----TNED---LAVLAKRLEDQQ-R 108 (185)
T ss_pred ceeEEeccEEEEEcCCccccccccc-cccccceEEEEc--CCCCEEEEEEeCCC-----Chhh---HHHHHHHHHHHH-H
Confidence 4444456789999999999443321 111 1234544 2222232 332221 1222 477888888774 2
Q ss_pred ccCCCCCCeeEEEeceec----CceEEEEEEEeCCCCcceeEEEEEEeecCCccceEEEEEcccCchhhHHHHHHHHHhh
Q 030020 103 SWRRPPGVAAKLIDCKAS----KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAV 178 (184)
Q Consensus 103 ~~~~~~~~~a~Lida~~r----~~yY~~EY~v~~p~~~~Rh~ls~v~v~~~G~~~rLYTlt~q~~E~rw~k~~~~l~~vv 178 (184)
+ +-| .-+.+.-+.- .+...++=+...-+. ..++++.++.=| +||-||...-|-..=.+-+..-+.|+
T Consensus 109 ~--rdp--~lqvvsnK~i~i~G~~~qQLDS~~t~~Gq---k~~SSvvL~~v~--~rl~tlQitlpA~nqqqaq~~ae~ii 179 (185)
T PRK11615 109 S--RDP--QLQVVTNKAIELKGHKLQQLDSIISAKGQ---TAYSSVVLGKVD--NQLLTMQITLPADNQQQAQTTAENII 179 (185)
T ss_pred h--hCc--CceeecceeEEECCeeeEEeeeeeecCCc---eEEEEEEEEeeC--CeEEEEEEecCCCCHHHHHHHHHHHH
Confidence 2 112 1122222211 468999988887763 566666666533 79999999999999999999999999
Q ss_pred cceee
Q 030020 179 ASFRF 183 (184)
Q Consensus 179 ~SF~v 183 (184)
++.++
T Consensus 180 ~tl~~ 184 (185)
T PRK11615 180 NTLVI 184 (185)
T ss_pred hheec
Confidence 98775
No 13
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=47.28 E-value=10 Score=30.61 Aligned_cols=20 Identities=10% Similarity=0.272 Sum_probs=17.1
Q ss_pred cccccCCChHHHHHHHHhcc
Q 030020 81 TRMESFGKVEAFADTLVSGL 100 (184)
Q Consensus 81 ~~l~~fG~p~eva~~Lv~~~ 100 (184)
+=+++||+|+++|..++...
T Consensus 45 eii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 45 EIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHcCCHHHHHHHHHHhh
Confidence 34789999999999998764
No 14
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=42.55 E-value=15 Score=32.88 Aligned_cols=137 Identities=18% Similarity=0.253 Sum_probs=74.1
Q ss_pred ceeeEeCCCCeEEEccCCceecc-cCCCCcceEEE--ecCCC----CC--Cce-EEEEEecCCCCccccccCC----ChH
Q 030020 25 LRVYTDELNKFEISIPQDWQLGA-GEPNGFKSITA--FYPQE----AS--SSS-VSVVITGLGPDFTRMESFG----KVE 90 (184)
Q Consensus 25 ~~~y~D~~dGy~f~yP~~W~~~~-g~~sg~k~v~~--f~p~~----~~--~~N-VsVvispv~~df~~l~~fG----~p~ 90 (184)
--++-|...||+|+.|.||.+.+ ++.. +-.+.. ..++. .. -.| -+|+.-.+ | ++=|- +-.
T Consensus 109 ~grvdn~~gGFS~vvP~GW~~Sda~~L~-yG~alls~~~~~~~~~~~~~p~andt~v~lgrl--d---~kl~a~ae~dn~ 182 (297)
T PF07174_consen 109 PGRVDNAAGGFSYVVPAGWVESDASHLD-YGSALLSKQTGEPPMPGQPPPVANDTSVVLGRL--D---LKLFASAEPDNT 182 (297)
T ss_pred cccccccccceEEeccCCccccccceee-cceeeeccCCCCCCCCCCCCCcCCCceEEeccc--c---ccccccccCChH
Confidence 34778999999999999999543 3321 111111 11111 11 123 34444444 2 33333 345
Q ss_pred HHHHHHHhccccccCCC-----CCCeeEEEeceecCc---eEEEEEEE-eCCCCcceeEEEEEEe-----ecCCccceEE
Q 030020 91 AFADTLVSGLDRSWRRP-----PGVAAKLIDCKASKG---FYYIEYTL-QNPGESRKHLFSAIGM-----ASNGWYNRLY 156 (184)
Q Consensus 91 eva~~Lv~~~~r~~~~~-----~~~~a~Lida~~r~~---yY~~EY~v-~~p~~~~Rh~ls~v~v-----~~~G~~~rLY 156 (184)
..|.+|-..|- ++.-| -+|+...+++.--.| ||...|+= .+|+.+ -.-+||+. .+.|.-.|-|
T Consensus 183 kaa~rl~sdmg-effmp~pg~rinq~~~~l~~~g~~g~asyyevkf~d~~kp~gq--iw~~vvg~p~~~~~~~~~~~rwf 259 (297)
T PF07174_consen 183 KAAVRLASDMG-EFFMPYPGTRINQETTPLDANGMPGSASYYEVKFTDANKPNGQ--IWAGVVGSPVAPGTPRGTPQRWF 259 (297)
T ss_pred HHHHHHhcccc-ceeccCCCccccccccccccCCcccceeEEEEEeccCCCCCCc--eEEEeecCcCCCCCCCCCCceEE
Confidence 68888887763 34332 378888888765533 77776664 346653 34445554 1223334667
Q ss_pred EEEcccCchhhHHH
Q 030020 157 TVTGQFVEEESEKY 170 (184)
Q Consensus 157 Tlt~q~~E~rw~k~ 170 (184)
-+=+++....-+|-
T Consensus 260 vvwlgt~~~pvd~~ 273 (297)
T PF07174_consen 260 VVWLGTANNPVDKG 273 (297)
T ss_pred EEEecCCCCCCCHH
Confidence 76666655544443
No 15
>COG4290 Guanyl-specific ribonuclease Sa [Nucleotide transport and metabolism]
Probab=39.79 E-value=25 Score=28.58 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=18.8
Q ss_pred eEEEEEEEeCCCCcceeEEEEEEee
Q 030020 123 FYYIEYTLQNPGESRKHLFSAIGMA 147 (184)
Q Consensus 123 yY~~EY~v~~p~~~~Rh~ls~v~v~ 147 (184)
=|+=||+|+.|+...|-..=+|+-+
T Consensus 104 gYYREYTVeTpG~sdRGarRIV~GG 128 (152)
T COG4290 104 GYYREYTVETPGLSDRGARRIVTGG 128 (152)
T ss_pred CcceeeEeeCCCcccCCceeEeeCC
Confidence 3667999999998777666666644
No 16
>cd00607 RNase_Sa RNase_Sa. Ribonucleases first isolated from Streptomyces aureofaciens. In general, ribonucleases cleave phosphodiester bonds in RNA and are essential for both non-specific RNA degradation and for numerous forms of RNA processing. RNAse Sa is a guanylate specific endoribonuclease which belongs to the superfamily of microbial ribonucleases. Typical of this sub-family, the enzyme hydrolyses the phosphodiester bonds of RNA at the 3' oxygen end of guanosine residues to yield oligonucleotides with the guanosine-2',3'-cyclophosphate at the 3' end and the hydroxyl group at the 5' end. The terminal guanosine-2,3'-cyclophosphate is hydrolysed by guanyl RNAses to give guanosine-3'-phosphate.
Probab=30.38 E-value=82 Score=23.92 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=17.6
Q ss_pred CCeeEEEeceec-----CceEEEEEEEeCCCC
Q 030020 109 GVAAKLIDCKAS-----KGFYYIEYTLQNPGE 135 (184)
Q Consensus 109 ~~~a~Lida~~r-----~~yY~~EY~v~~p~~ 135 (184)
.+......-.|+ ..-|+.||+|..|+.
T Consensus 30 ~~dG~~F~NrE~~LP~~~~gyY~EytV~tpg~ 61 (95)
T cd00607 30 SKDGVVFGNREGRLPKQSRGYYHEYTVKTPGS 61 (95)
T ss_pred CCCCceEcCccccCCCCCCCceEEEEeCCCCC
Confidence 445555555554 235789999999974
No 17
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=28.94 E-value=30 Score=27.65 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=22.1
Q ss_pred eEEEEEcccCchhhHHHHHHHHHhhccee
Q 030020 154 RLYTVTGQFVEEESEKYGSNIEKAVASFR 182 (184)
Q Consensus 154 rLYTlt~q~~E~rw~k~~~~l~~vv~SF~ 182 (184)
||.+| .+--|+|..++.++++.|+.||.
T Consensus 81 KLl~m-L~eVd~RY~qY~~Qmq~VvssFe 108 (140)
T PF07526_consen 81 KLLSM-LDEVDRRYRQYYDQMQAVVSSFE 108 (140)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 45578899999999999999996
No 18
>PF15508 NAAA-beta: beta subunit of N-acylethanolamine-hydrolyzing acid amidase
Probab=24.58 E-value=55 Score=23.91 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=14.0
Q ss_pred EEEEEcc-cCchhhHHHHHH
Q 030020 155 LYTVTGQ-FVEEESEKYGSN 173 (184)
Q Consensus 155 LYTlt~q-~~E~rw~k~~~~ 173 (184)
.|+++.. .|++||.++...
T Consensus 5 ~y~InLdlpP~eRw~~i~~~ 24 (95)
T PF15508_consen 5 WYTINLDLPPEERWVQIAKD 24 (95)
T ss_pred EEEeeCCCCHHHHHHHHHHH
Confidence 4888887 688899965443
No 19
>PF12299 DUF3627: Protein of unknown function (DUF3627); InterPro: IPR022549 This domain is found in bacteria and viruses, and is approximately 90 amino acids in length. The domain is found C-terminal to PF02498 from PFAM.
Probab=21.56 E-value=73 Score=22.96 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=28.3
Q ss_pred EeCCCCc-ceeEEEEEEeecCCccceEEEEEccc--CchhhHHHHHHHHHhhcc
Q 030020 130 LQNPGES-RKHLFSAIGMASNGWYNRLYTVTGQF--VEEESEKYGSNIEKAVAS 180 (184)
Q Consensus 130 v~~p~~~-~Rh~ls~v~v~~~G~~~rLYTlt~q~--~E~rw~k~~~~l~~vv~S 180 (184)
+..|... .+|-|++ +.- +| +.++++++|- -+++|.+++...+-|+++
T Consensus 13 v~~P~d~~k~~~l~v-~~~-~~--~~y~~irgQ~~~~~~~k~k~~~~~~ii~d~ 62 (88)
T PF12299_consen 13 VPYPRDPSKHPRLAV-LKN-DG--NQYAFIRGQKRYVRRRKKKLKKDMEIIYDS 62 (88)
T ss_pred ccCCCCCCcceEEEE-EEe-CC--cEEEEEehhHHHHHHHHHHhcCCceEEEEc
Confidence 4455543 4466665 332 23 6899999994 566777776555555543
No 20
>smart00574 POX domain associated with HOX domains.
Probab=20.38 E-value=54 Score=26.55 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=19.3
Q ss_pred ccCchhhHHHHHHHHHhhcceee
Q 030020 161 QFVEEESEKYGSNIEKAVASFRF 183 (184)
Q Consensus 161 q~~E~rw~k~~~~l~~vv~SF~v 183 (184)
+--|+|..++-++++.|+.||..
T Consensus 87 ~eVd~RY~qY~~qmq~v~ssFe~ 109 (140)
T smart00574 87 EEVDRRYKHYYEQMQTVVSSFDQ 109 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678889999999999999964
Done!