Query 030020
Match_columns 184
No_of_seqs 108 out of 125
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 11:28:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030020.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030020hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xb3_A PSBP protein; photosynt 100.0 1.9E-39 6.5E-44 258.8 18.0 154 21-184 4-165 (165)
2 2lnj_A SLL1418 protein, putati 100.0 3.4E-41 1.2E-45 271.6 0.0 157 21-184 10-170 (170)
3 1v2b_A 23-kDa polypeptide of p 100.0 3.4E-37 1.2E-41 251.4 14.0 153 22-184 6-177 (177)
4 1tu1_A Hypothetical protein PA 98.1 0.0001 3.5E-09 57.2 14.2 129 32-183 8-141 (148)
5 3lyd_A Uncharacterized protein 97.1 0.04 1.4E-06 44.0 16.2 134 33-184 18-158 (161)
6 3hlz_A Uncharacterized protein 42.6 30 0.001 29.4 4.6 43 26-73 5-48 (269)
7 2fpn_A YWMB; structural genomo 28.4 1.8E+02 0.0061 23.6 7.1 61 121-182 58-122 (216)
8 1jb0_F Photosystem 1 reaction 19.9 21 0.00071 28.5 -0.2 30 2-31 5-34 (164)
9 3vxv_A Methyl-CPG-binding doma 16.8 1.1E+02 0.0039 20.5 3.1 20 39-58 6-30 (69)
10 2jz2_A SSL0352 protein; SH3-li 13.8 1.1E+02 0.0039 20.7 2.3 52 108-166 4-55 (66)
No 1
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=100.00 E-value=1.9e-39 Score=258.81 Aligned_cols=154 Identities=25% Similarity=0.425 Sum_probs=131.9
Q ss_pred hccCceeeEeCCCCeEEEccCCceecccCCCCcceEEEecCCCCCCceEEEEEecCCCCccccccCCChHHHHHHHHhcc
Q 030020 21 ANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGL 100 (184)
Q Consensus 21 ~~~g~~~y~D~~dGy~f~yP~~W~~~~g~~sg~k~v~~f~p~~~~~~NVsVvispv~~df~~l~~fG~p~eva~~Lv~~~ 100 (184)
..+||++|.|+.+||+|+||++|....... ...++|+|+....+||+|+|+|+++ +++|++||+|++||++|+++.
T Consensus 4 ~~~g~~~~~D~~~gysf~~P~~W~~~~~~~---g~~v~f~d~~~~~~~v~V~v~p~~~-~~~l~~~G~~e~va~~l~~~~ 79 (165)
T 2xb3_A 4 ATSGLQAYVDSYDGYEFLYPRGWVQVQVED---PVDVVFHDIIETTENVSVVVNTVAS-TKSLEELGSPEEVGDRLLRNI 79 (165)
T ss_dssp --CCEEEEEETTTTEEEEEETTEEEECCCT---TEEEEEEESSCTTSEEEEEEEECSS-CCCSGGGCCHHHHHHHHHHHT
T ss_pred CCCCceEEEcCCCCEEEEcCCCCeEecCCC---CceEEEECcccCCceEEEEEecCCC-CCChHHcCCHHHHHHHHHHHh
Confidence 357999999999999999999999654321 1247899998889999999999976 589999999999999999986
Q ss_pred ccccCCCCCCeeEEEeceec----CceEEEEEEEeCCC----CcceeEEEEEEeecCCccceEEEEEcccCchhhHHHHH
Q 030020 101 DRSWRRPPGVAAKLIDCKAS----KGFYYIEYTLQNPG----ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGS 172 (184)
Q Consensus 101 ~r~~~~~~~~~a~Lida~~r----~~yY~~EY~v~~p~----~~~Rh~ls~v~v~~~G~~~rLYTlt~q~~E~rw~k~~~ 172 (184)
.++ ..+++.++||++.+| +.||+|||+++.|+ +..||.|++++|.+ ||||||++|+||++|+|+++
T Consensus 80 ~~~--~~~~~~~~l~~a~~r~~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~~----g~lY~l~~sape~~w~~~~~ 153 (165)
T 2xb3_A 80 IAP--SESGRSSALIAATSQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSR----GKVYTLSVSAPEERWPKVED 153 (165)
T ss_dssp TSC--TTSSCEEEEEEEEEEEETTEEEEEEEEEEECC-----CCEEEEEEEEEEET----TEEEEEEEEEEGGGHHHHHH
T ss_pred hcC--CCCCcceEEEEeeeeecCCceEEEEEEEEecCCCccCccccEEEEEEEEEC----CEEEEEEEecCHHHhHHHHH
Confidence 521 123799999999998 34999999999998 25899999999985 59999999999999999999
Q ss_pred HHHHhhcceeeC
Q 030020 173 NIEKAVASFRFI 184 (184)
Q Consensus 173 ~l~~vv~SF~v~ 184 (184)
.|++|++||+|+
T Consensus 154 ~l~~v~~SF~v~ 165 (165)
T 2xb3_A 154 QFKTIVSSFTVY 165 (165)
T ss_dssp HHHHHHHTCEEC
T ss_pred HHHHHHhhEEeC
Confidence 999999999986
No 2
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}
Probab=100.00 E-value=3.4e-41 Score=271.56 Aligned_cols=157 Identities=17% Similarity=0.265 Sum_probs=135.1
Q ss_pred hccCceeeEeCCCCeEEEccCCceecccCCCCcceEEEecCCCCCCceEEEEEecCCCCccccccCCChHHHHHHHHhcc
Q 030020 21 ANEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGL 100 (184)
Q Consensus 21 ~~~g~~~y~D~~dGy~f~yP~~W~~~~g~~sg~k~v~~f~p~~~~~~NVsVvispv~~df~~l~~fG~p~eva~~Lv~~~ 100 (184)
..+||++|+|+.|||+|+||+||+..+...+.....++|+|+...++||+|+|+|++.+ ++|++||+|++||++|++.+
T Consensus 10 ~~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~-~si~d~G~pe~va~~l~~~~ 88 (170)
T 2lnj_A 10 GIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSD-KTLTDLGTATDVGYRFMKTV 88 (170)
Confidence 45799999999999999999999965432212223478999999999999999999775 79999999999999999987
Q ss_pred ccccCCCCCCeeEEEeceec----CceEEEEEEEeCCCCcceeEEEEEEeecCCccceEEEEEcccCchhhHHHHHHHHH
Q 030020 101 DRSWRRPPGVAAKLIDCKAS----KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEK 176 (184)
Q Consensus 101 ~r~~~~~~~~~a~Lida~~r----~~yY~~EY~v~~p~~~~Rh~ls~v~v~~~G~~~rLYTlt~q~~E~rw~k~~~~l~~ 176 (184)
.++ ..+++.++||++.+| +.||+|||+++.|+...||.|++++|.+ ||||||++|+||++|++.++.|++
T Consensus 89 ~~~--~~~~~~a~li~a~~~~~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v~~----gklY~l~~~ape~~w~~~~~~l~~ 162 (170)
T 2lnj_A 89 NDA--SQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVTTNR----GKLITFDLSTAEDRWDTVKSLFDT 162 (170)
Confidence 532 234899999999998 3599999999999446899999999875 599999999999999999999999
Q ss_pred hhcceeeC
Q 030020 177 AVASFRFI 184 (184)
Q Consensus 177 vv~SF~v~ 184 (184)
|++||+|+
T Consensus 163 v~~SF~v~ 170 (170)
T 2lnj_A 163 VASSFHVY 170 (170)
Confidence 99999985
No 3
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2
Probab=100.00 E-value=3.4e-37 Score=251.39 Aligned_cols=153 Identities=20% Similarity=0.308 Sum_probs=118.0
Q ss_pred ccCceeeEeCCCCeEEEccCCceecccCC-CCcceEEEecCCCCCCceEEEEEecCCCCccccccCCChHHH----HHHH
Q 030020 22 NEDLRVYTDELNKFEISIPQDWQLGAGEP-NGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAF----ADTL 96 (184)
Q Consensus 22 ~~g~~~y~D~~dGy~f~yP~~W~~~~g~~-sg~k~v~~f~p~~~~~~NVsVvispv~~df~~l~~fG~p~ev----a~~L 96 (184)
..||++|. .|||+|+||++|....... +| ..++|+++...++||+|+|+|++. ++|++||+|++| |+.|
T Consensus 6 ~~g~~~y~--~~gysf~yP~~W~~~~~~~~~G--~~~~f~d~~~~~~nvsV~v~p~~~--~si~dlGspe~~~~~v~~~l 79 (177)
T 1v2b_A 6 DTDFQTYN--GDGFKLQIPSKWNPNKEVEYPG--QVLRFEDNFDATSNVIVAITPTDK--KSITDFGSPEQFLSQVDYLL 79 (177)
T ss_dssp -CCEEEEE--CSSEEEEEETTCEECCCCCSTT--EEEEEEETTEEEEEEEEEEEECSC--SSGGGGCSHHHHHHHTGGGC
T ss_pred CCCceEEe--cCCEEEEcCCCCcccccccCCC--ceEEEeCCcCCCccEEEEEeCCCC--CChhHCCCHHHHHHHHHHHH
Confidence 46999998 9999999999999432111 11 237899998889999999999943 799999999995 5555
Q ss_pred Hhcccccc-CC------CCCCeeEEEeceec--C--ceEEEEEEEeCCCC--cceeEEEEEEeecCCccceEEEEEcccC
Q 030020 97 VSGLDRSW-RR------PPGVAAKLIDCKAS--K--GFYYIEYTLQNPGE--SRKHLFSAIGMASNGWYNRLYTVTGQFV 163 (184)
Q Consensus 97 v~~~~r~~-~~------~~~~~a~Lida~~r--~--~yY~~EY~v~~p~~--~~Rh~ls~v~v~~~G~~~rLYTlt~q~~ 163 (184)
.++.+... .. ++.++|+||++.+| + .||+|||.++.|+. ..||+|++++|.+ ||||||++|+|
T Consensus 80 ~~~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~~~G~~YY~~E~~~~~~~g~e~~rH~l~~~tv~~----gkLY~l~~~a~ 155 (177)
T 1v2b_A 80 GRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVND----GKLYICKAQAG 155 (177)
T ss_dssp ------------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEET----TEEEEEEEEEE
T ss_pred HHHhhcccccccCCcccCcccceEEEEeEEEEeCCeEEEEEEEEEecCCCCccccEEEEEEEEEC----CEEEEEEEecC
Confidence 55543210 01 12388999999999 3 49999999999972 4799999999986 59999999999
Q ss_pred chhhHHH-HHHHHHhhcceeeC
Q 030020 164 EEESEKY-GSNIEKAVASFRFI 184 (184)
Q Consensus 164 E~rw~k~-~~~l~~vv~SF~v~ 184 (184)
|+||+|. ++.|++|++||+|.
T Consensus 156 e~~W~k~~~~~l~~v~~SF~v~ 177 (177)
T 1v2b_A 156 DKRWFKGAKKFVENTATSFSLA 177 (177)
T ss_dssp GGGCSTTTTHHHHHHHHTCEEC
T ss_pred HHHhhhhHHHHHHHHHhheecC
Confidence 9999995 99999999999983
No 4
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=98.12 E-value=0.0001 Score=57.20 Aligned_cols=129 Identities=15% Similarity=0.187 Sum_probs=83.2
Q ss_pred CCCeEEEccCCceecccCCCCcceEEEecCCCCC-C--ceEEEEEecCCCCccccccCCChHHHHHHHHhccccccCCCC
Q 030020 32 LNKFEISIPQDWQLGAGEPNGFKSITAFYPQEAS-S--SSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPP 108 (184)
Q Consensus 32 ~dGy~f~yP~~W~~~~g~~sg~k~v~~f~p~~~~-~--~NVsVvispv~~df~~l~~fG~p~eva~~Lv~~~~r~~~~~~ 108 (184)
-+.++|..|.||+.. + +.+|..+... . -|+.|...+++++ .+.++..++-++.+.+. - +
T Consensus 8 ~~Egsl~lP~gw~D~-t-------~nv~~~~~~~~~g~~~lvIsR~~~~~~-------~~l~~~~~~q~~~l~~~--l-~ 69 (148)
T 1tu1_A 8 LHEADLEIPDAWQDQ-S-------INIFKLPASGPAREASFVISRDASQGD-------APFADYVARQLENAEKQ--L-P 69 (148)
T ss_dssp CSSEEEEEETTSEEC-C-------BEEEEECCBTTBCCEEEEEEEECCCTT-------SCHHHHHHHHHHHHHHH--S-T
T ss_pred ECCEEEeCCCCcEee-e-------EEEEEcCCCCCCCceEEEEEeccCCCC-------CCHHHHHHHHHHHHHhh--C-c
Confidence 467899999999932 2 2455544222 2 4555555566554 35666666655554211 1 1
Q ss_pred C-CeeEEEeceec-CceEEEEEEEeCCCCcceeEEEEEEeecCCccceEEEEEcccCchhhHHHHHHHHHhhcceee
Q 030020 109 G-VAAKLIDCKAS-KGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF 183 (184)
Q Consensus 109 ~-~~a~Lida~~r-~~yY~~EY~v~~p~~~~Rh~ls~v~v~~~G~~~rLYTlt~q~~E~rw~k~~~~l~~vv~SF~v 183 (184)
+ +...+-.+.-+ ..--.+||+-...+. .+|-.-++.+.. + ++|.||..+|...|+..+..+++|++||+.
T Consensus 70 ~y~~~~~~~~~l~g~~a~~~e~~~~~~g~-~~~Q~q~~~~~~-~---~~l~~t~t~~~~~~~~~~~~~~~i~~Sf~~ 141 (148)
T 1tu1_A 70 GFKLHKRWDINIHGHAAVLLDYQWQREGR-DLMLRQVFIERR-P---AVLITTLTTTPADLPHHEPAWKQAMQTLVP 141 (148)
T ss_dssp TCEEEEEEEEEETTEEEEEEEEEEEETTE-EEEEEEEEECCS-S---SEEEEEEEECGGGHHHHHHHHHHHHHTCEE
T ss_pred CcEEeeeEeEEEcCCcEEEEEEEEccCCE-EEEEEEEEEEEC-C---eEEEEEEEcCCCCCHHHHHHHHHHHHhccc
Confidence 1 11111111112 134778888887664 788888866654 2 999999999999999999999999999985
No 5
>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}
Probab=97.13 E-value=0.04 Score=43.98 Aligned_cols=134 Identities=14% Similarity=0.196 Sum_probs=87.9
Q ss_pred CCeEEEccCCceecccCCCCcceEEEecCC-CC--CCceEEEEEecCCCCccccccCCChHHHHHHHHhccccccCCCCC
Q 030020 33 NKFEISIPQDWQLGAGEPNGFKSITAFYPQ-EA--SSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPG 109 (184)
Q Consensus 33 dGy~f~yP~~W~~~~g~~sg~k~v~~f~p~-~~--~~~NVsVvispv~~df~~l~~fG~p~eva~~Lv~~~~r~~~~~~~ 109 (184)
=++++-.|.||.......+ ..+--|. .. =.-|+-|.+.-.+.|+ | ++.-..| .+.. ..-|+
T Consensus 18 p~~~v~~P~gWe~~~~~~~----~~~~~~~~~~~~F~pN~vVtv~r~~~~~-----~---e~~r~el-~~~~---~~lp~ 81 (161)
T 3lyd_A 18 TGFTVPIPETWQPDPTMGT----QFAARPHTPPQGFTPNIIGTVRRAATGA-----L---HNQRTEL-DQRA---TQLPD 81 (161)
T ss_dssp CEEEEECCTTEEECTTSSS----SEEEEESSCCSSSCCEEEEEEEEECTTH-----H---HHHHHHH-HHHH---TTSTT
T ss_pred ceeeccCCCCceEcCCCCc----eEEeccCCCCCCccccEEEEEEecCcHH-----H---HHHHHHH-HHHH---hhCCC
Confidence 4789999999997754433 1333333 22 2789988887776664 2 3333333 3321 11244
Q ss_pred CeeEEEeceecCc--eEEEEEEEeCCCCcceeE--EEEEEeecCCccceEEEEEcccCchhhHHHHHHHHHhhcceeeC
Q 030020 110 VAAKLIDCKASKG--FYYIEYTLQNPGESRKHL--FSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRFI 184 (184)
Q Consensus 110 ~~a~Lida~~r~~--yY~~EY~v~~p~~~~Rh~--ls~v~v~~~G~~~rLYTlt~q~~E~rw~k~~~~l~~vv~SF~v~ 184 (184)
-+-.-....+.+| -+..||.-..|.. ..+. +..+.|.++|.. -++.|+++|.+..-+.+.+.++++++|++|.
T Consensus 82 ~~~~~r~~~~~~G~pa~~iey~y~~~~~-g~~aq~~~~vvve~~~v~-~vv~lt~T~~~~q~~~~~~d~q~iv~sl~v~ 158 (161)
T 3lyd_A 82 YAERGRTETTVDGFPAYHIEYAYRHHGT-ITIAQMITLVEVSHPHAV-DIIQLTATCAGDQTADYWDTFRLMHADLTVQ 158 (161)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEEETTT-EEEEEEEEEEEEECSSCE-EEEEEEEEEEGGGHHHHHHHHHHHHHTCEEE
T ss_pred cEeecccccccCCcccEEEEEEEecCCC-ceEeeEEEEEEEecCCEE-EEEEEEEEeccccchHHHHHHHHHhheeEec
Confidence 4433334445555 6999999988875 3453 567888887632 3455599999999999999999999999973
No 6
>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=42.62 E-value=30 Score=29.36 Aligned_cols=43 Identities=19% Similarity=0.386 Sum_probs=31.9
Q ss_pred eeeEeCCCCeEEEccCCceec-ccCCCCcceEEEecCCCCCCceEEEEE
Q 030020 26 RVYTDELNKFEISIPQDWQLG-AGEPNGFKSITAFYPQEASSSSVSVVI 73 (184)
Q Consensus 26 ~~y~D~~dGy~f~yP~~W~~~-~g~~sg~k~v~~f~p~~~~~~NVsVvi 73 (184)
+.|+.|..=|+..||.+|-.. +|+.| ..|+.|..=.-|..+.-
T Consensus 5 kk~ISPgaWfs~~yP~~W~EfEd~E~s-----flFynp~~WtGNfRISa 48 (269)
T 3hlz_A 5 KKFISPGAWFSMNYPSDWNEFEDGEGS-----FLFYNPDVWTGNFRISA 48 (269)
T ss_dssp EEEECGGGCEEEEECTTCEEECCCTTE-----EEEECSSSCCCEEEEEE
T ss_pred ceeecCCceeEEecCCCcccccCCCCc-----eeeeChhhcccceEEEe
Confidence 578899999999999999943 34432 67887766677766543
No 7
>2fpn_A YWMB; structural genomocs, domain swappin structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.49A {Bacillus subtilis} SCOP: d.129.10.1
Probab=28.44 E-value=1.8e+02 Score=23.60 Aligned_cols=61 Identities=8% Similarity=0.020 Sum_probs=43.1
Q ss_pred CceEEEEEEEeCCCCcceeEEEEEEe---ecCCccceEEEEEcccCchhhHHHHHH-HHHhhccee
Q 030020 121 KGFYYIEYTLQNPGESRKHLFSAIGM---ASNGWYNRLYTVTGQFVEEESEKYGSN-IEKAVASFR 182 (184)
Q Consensus 121 ~~yY~~EY~v~~p~~~~Rh~ls~v~v---~~~G~~~rLYTlt~q~~E~rw~k~~~~-l~~vv~SF~ 182 (184)
+..|...-+.+.+.....+.+.++.+ ++...| -+|.+.+..++..|.+..+. .+++.++|.
T Consensus 58 ~~~~k~~g~~~~~~n~~~e~I~l~~~~~~~~~~sY-i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 122 (216)
T 2fpn_A 58 DKMIKAIGTYTDKKNRTSFRLQLVTTLKKHNPTSY-LLYEQMSLETPDSWNDTYEQFERETLGIFQ 122 (216)
T ss_dssp SSEEEEEEEEEETTTTEEEEEEEEEESSCSSCCEE-EEEEEEESSCCSCHHHHHHHHHHHHHHHHS
T ss_pred CceEEEEEEEcCCCCceeEEEEEEEEecCCCCceE-EEEEEeCCcchhHHHHHHHHHHHHHHHHhc
Confidence 56777777777776434567777777 445556 57888888877889988888 466776664
No 8
>1jb0_F Photosystem 1 reaction centre subunit III; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.16.1 PDB: 3pcq_F*
Probab=19.93 E-value=21 Score=28.49 Aligned_cols=30 Identities=17% Similarity=0.124 Sum_probs=9.3
Q ss_pred cchhhhhcchhhhhhHhhhhccCceeeEeC
Q 030020 2 FQLAFTACSFPAIVSYALAANEDLRVYTDE 31 (184)
Q Consensus 2 ~~~~~~~~~~~~~~~~a~a~~~g~~~y~D~ 31 (184)
+.++++++.+...++.|.|+.+|+..|.|.
T Consensus 5 ~~~~l~~~~~~~~~p~a~A~~agLtpC~es 34 (164)
T 1jb0_F 5 LALLLVLTLWLGFTPLASADVAGLVPCKDS 34 (164)
T ss_dssp -------------------CGGGCEEGGGC
T ss_pred HHHHHHHHHHHccCchhhhhhcCCccCcCC
Confidence 455666666666677788888899999775
No 9
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=16.82 E-value=1.1e+02 Score=20.45 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=11.2
Q ss_pred ccCCcee-----cccCCCCcceEEE
Q 030020 39 IPQDWQL-----GAGEPNGFKSITA 58 (184)
Q Consensus 39 yP~~W~~-----~~g~~sg~k~v~~ 58 (184)
-|.||.. ..|...|..||.-
T Consensus 6 lp~GW~R~~~~R~~G~s~gk~DvyY 30 (69)
T 3vxv_A 6 VPCGWERVVKQRLSGKTAGKFDVYF 30 (69)
T ss_dssp SCTTCEEEEEECCSSTTTTCEEEEE
T ss_pred CCCCCEEEEEEeccCCCCCcceEEE
Confidence 4889973 2344445555543
No 10
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=13.82 E-value=1.1e+02 Score=20.69 Aligned_cols=52 Identities=19% Similarity=0.332 Sum_probs=34.5
Q ss_pred CCCeeEEEeceecCceEEEEEEEeCCCCcceeEEEEEEeecCCccceEEEEEcccCchh
Q 030020 108 PGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEE 166 (184)
Q Consensus 108 ~~~~a~Lida~~r~~yY~~EY~v~~p~~~~Rh~ls~v~v~~~G~~~rLYTlt~q~~E~r 166 (184)
||...++++. ++.||-||=.||.=...+ .+|+.- +|-..||.|+..+--|..
T Consensus 4 PG~~V~V~np--~~~Yy~y~G~VQRvsdgk---aaVLFE--GGnWDKLVTf~L~eLe~~ 55 (66)
T 2jz2_A 4 PGATVRVTNV--DDTYYRFEGLVQRVSDGK---AAVLFE--NGNWDKLVTFRLSELEAV 55 (66)
T ss_dssp TTCEEEECCT--TSTTBTCEEEEEEEETTE---EEEEEE--SSSCEEEEEEESTTEEEC
T ss_pred CCCEEEEeCC--CCcccceeEEEEEecCCc---EEEEec--CCCceeEEEEEhhHceec
Confidence 5666666554 367999999999755432 233332 455569999999876653
Done!