BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030023
         (184 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9CD72|UVRD1_MYCLE ATP-dependent DNA helicase UvrD1 OS=Mycobacterium leprae (strain
           TN) GN=uvrD PE=3 SV=1
          Length = 778

 Score = 31.6 bits (70), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 99  IWVLQ-EETSVRILRYVILFIGVMNSLFSVYDIYD 132
           +WV     T VRILR     IG +NS FS+YD+ D
Sbjct: 97  MWVSTFHSTCVRILRNQASLIGGLNSNFSIYDVDD 131


>sp|Q8XRN1|DNAE2_RALSO Error-prone DNA polymerase OS=Ralstonia solanacearum (strain
           GMI1000) GN=dnaE2 PE=3 SV=1
          Length = 1075

 Score = 30.8 bits (68), Expect = 5.2,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 26/49 (53%)

Query: 100 WVLQEETSVRILRYVILFIGVMNSLFSVYDIYDDLISRRVHSSDAEKFA 148
           W   +  S+R+L+  +L +G++ ++    D+ D L  RR H    +K A
Sbjct: 538 WDKDDLESLRLLKVDVLALGMLTAIRRTLDMLDALPGRRAHYGAPDKLA 586


>sp|Q59835|LSPA_STACT Lipoprotein signal peptidase OS=Staphylococcus carnosus (strain
           TM300) GN=lspA PE=3 SV=1
          Length = 159

 Score = 30.0 bits (66), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 145 EKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVI 182
            KF  +     NG  WG++ G +SF F+   + LGL++
Sbjct: 42  PKFLYITSHRNNGAAWGILSGRMSFFFIVTIVVLGLLV 79


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.332    0.145    0.472 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,074,929
Number of Sequences: 539616
Number of extensions: 2299702
Number of successful extensions: 7541
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 7535
Number of HSP's gapped (non-prelim): 27
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 57 (26.6 bits)