Query 030023
Match_columns 184
No_of_seqs 101 out of 225
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 07:19:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030023.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030023hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13398 Peptidase_M50B: Pepti 100.0 1.1E-31 2.3E-36 221.3 17.3 159 9-174 38-199 (200)
2 TIGR02185 Trep_Strep conserved 62.2 85 0.0018 25.5 14.2 72 110-183 110-183 (189)
3 PF15190 DUF4583: Domain of un 38.6 1.1E+02 0.0024 23.8 5.6 20 146-167 58-77 (128)
4 cd06161 S2P-M50_SpoIVFB SpoIVF 34.1 50 0.0011 27.1 3.4 46 9-55 54-104 (208)
5 PRK07668 hypothetical protein; 31.5 3.4E+02 0.0074 23.4 10.3 10 40-49 111-120 (254)
6 PRK00523 hypothetical protein; 30.9 73 0.0016 22.4 3.3 24 159-182 2-25 (72)
7 cd06164 S2P-M50_SpoIVFB_CBS Sp 21.4 1.2E+02 0.0027 25.3 3.6 45 9-54 69-118 (227)
8 PF03694 Erg28: Erg28 like pro 19.7 2.8E+02 0.006 20.9 4.8 54 110-169 3-56 (111)
9 PF02470 MCE: mce related prot 19.2 1.3E+02 0.0029 20.3 2.9 18 12-29 29-46 (81)
10 PF11239 DUF3040: Protein of u 15.3 2.8E+02 0.006 19.3 3.8 43 137-179 16-63 (82)
No 1
>PF13398 Peptidase_M50B: Peptidase M50B-like
Probab=100.00 E-value=1.1e-31 Score=221.31 Aligned_cols=159 Identities=35% Similarity=0.573 Sum_probs=136.4
Q ss_pred EeceEEEEEEEecCCCceeEEec--Cce-eeEecccchhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhhhH
Q 030023 9 YFFVQVEGMQVHANEGGATQTRG--GIY-WLILPAGYLGSSFWGMALVLASTNLTTARIAAGCLALALFIVLFIAQNWTL 85 (184)
Q Consensus 9 ~~gG~v~~I~l~~d~sG~T~s~G--g~~-~~~~~AGY~gp~l~G~~l~~~~~~~~~~~i~~~~~~~lll~~l~~vRn~~g 85 (184)
-+|||+++|+++||+||.|.++| +++ +++++|||++|+++|..+++++++++.+..+. ...+.++..++++||+++
T Consensus 38 l~G~~v~~i~l~~~~~G~~~~~~~~~~~~~~i~~aGyl~~~l~g~~~~~~~~~~~~~~~l~-~~~~~l~~~l~~~r~~~~ 116 (200)
T PF13398_consen 38 LTGGRVKGIVLFPDGSGVTVSSGPSGIGRFLIALAGYLGPALFGLLLLWLLFSGWARAVLF-LGLLILLVLLLFVRNWFG 116 (200)
T ss_pred HhCCCcceEEEEeCCCceEEEecCCCcchhHHhcccchHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHhhHHH
Confidence 36999999999999999999999 543 68999999999999999999887766654444 555566677788999999
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhhhHHHHHHHHHHhccCCCCCcHHHHHhHCCCCCCchhHHHHHH
Q 030023 86 RGLCIGFIVFLAVIWVLQEETSVRILRYVILFIGVMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWG 165 (184)
Q Consensus 86 ~~~~l~~~~l~~~~w~~~~~~~~~~l~~~llf~Gv~~~l~~v~dl~~~~~~~~~~~SDA~~LA~lt~~~~Pa~~W~~lw~ 165 (184)
+..++..++++...++..+ +...+++++++|+++++|+++|+ ||+++|+.++|||+|+||+|++ |+++|+.+|.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ig~~~~l~~~~~i-~~l~~~~~~~sDa~~la~lt~~--p~~~W~~~~~ 190 (200)
T PF13398_consen 117 ILVVILFGALLIALWFFAP---PWILRFILLFIGVFLLLYSVRDI-DDLFRRRVNASDADQLARLTGL--PAWVWGLLWL 190 (200)
T ss_pred HHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHHcCH-HHHhcCCCCCChHHHHHHHHCC--CHHHHHHHHH
Confidence 9999986555555555444 57888999999999999999998 8888999999999999999999 9999999999
Q ss_pred HHHHHHHHH
Q 030023 166 IISFAFLCA 174 (184)
Q Consensus 166 ~isl~~l~~ 174 (184)
++|+.++.+
T Consensus 191 ~~s~~~l~~ 199 (200)
T PF13398_consen 191 AISLACLAA 199 (200)
T ss_pred HHHHHHHHh
Confidence 999998865
No 2
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=62.17 E-value=85 Score=25.54 Aligned_cols=72 Identities=19% Similarity=0.349 Sum_probs=40.9
Q ss_pred HHHHHHHH-HHHhhhhHHHHHHHHHHhcc-CCCCCcHHHHHhHCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 030023 110 ILRYVILF-IGVMNSLFSVYDIYDDLISR-RVHSSDAEKFAEVCPCPCNGVGWGVIWGIISFAFLCAAMYLGLVIL 183 (184)
Q Consensus 110 ~l~~~llf-~Gv~~~l~~v~dl~~~~~~~-~~~~SDA~~LA~lt~~~~Pa~~W~~lw~~isl~~l~~~~~~~~~~~ 183 (184)
...|.+.. ++......|.|-..|+...+ .++..|++...++... .+.-|..++.+.++.+-..|.++|---+
T Consensus 110 ~ia~~~~~~~~~~g~~~p~~~~~d~y~~~~~~~~~~~~y~~~~~~~--~~~~~~~~~~~~t~v~~~iG~~iG~kll 183 (189)
T TIGR02185 110 TIAYVLFFLLVAMGPILPIWLFKDEYIAFFAARGDSAEYIDQYIKY--VSAIWAVIMIVLTAVAGIAGVLIGKKLL 183 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCcHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443433 34444445666555554432 2334455666665554 2334777888888888888888875433
No 3
>PF15190 DUF4583: Domain of unknown function (DUF4583)
Probab=38.64 E-value=1.1e+02 Score=23.81 Aligned_cols=20 Identities=15% Similarity=0.074 Sum_probs=15.3
Q ss_pred HHHhHCCCCCCchhHHHHHHHH
Q 030023 146 KFAEVCPCPCNGVGWGVIWGII 167 (184)
Q Consensus 146 ~LA~lt~~~~Pa~~W~~lw~~i 167 (184)
.=+++-.+ |-++|..++++-
T Consensus 58 ~~~rL~sl--PfW~wa~ifllP 77 (128)
T PF15190_consen 58 LKARLLSL--PFWMWALIFLLP 77 (128)
T ss_pred HHhhcccC--cHHHHHHHHHHH
Confidence 34567777 999999988764
No 4
>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.
Probab=34.13 E-value=50 Score=27.13 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=33.4
Q ss_pred EeceEEEEEEEecCCCceeEEecC-----ceeeEecccchhHHHHHHHHHHH
Q 030023 9 YFFVQVEGMQVHANEGGATQTRGG-----IYWLILPAGYLGSSFWGMALVLA 55 (184)
Q Consensus 9 ~~gG~v~~I~l~~d~sG~T~s~Gg-----~~~~~~~AGY~gp~l~G~~l~~~ 55 (184)
..|.|+++|+++|-+ |.+..+.. .+..++.||+....+.+......
T Consensus 54 ~~G~~v~~i~l~p~G-g~~~~~~~~~~~~~~~lIalAGPl~n~~la~~~~~l 104 (208)
T cd06161 54 RYGIRVRSITLLPFG-GVAELEEEPETPKEEFVIALAGPLVSLLLAGLFYLL 104 (208)
T ss_pred HcCCCccceEEEeee-eeeeeccCCCChhHheeeeeehHHHHHHHHHHHHHH
Confidence 468889999999975 44544432 23789999999999988665443
No 5
>PRK07668 hypothetical protein; Validated
Probab=31.48 E-value=3.4e+02 Score=23.42 Aligned_cols=10 Identities=30% Similarity=0.205 Sum_probs=5.7
Q ss_pred ccchhHHHHH
Q 030023 40 AGYLGSSFWG 49 (184)
Q Consensus 40 AGY~gp~l~G 49 (184)
-||+-..+.+
T Consensus 111 ig~~~~~~l~ 120 (254)
T PRK07668 111 IGYPISLILT 120 (254)
T ss_pred hhHHHHHHHH
Confidence 5666555555
No 6
>PRK00523 hypothetical protein; Provisional
Probab=30.87 E-value=73 Score=22.44 Aligned_cols=24 Identities=8% Similarity=-0.096 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Q 030023 159 GWGVIWGIISFAFLCAAMYLGLVI 182 (184)
Q Consensus 159 ~W~~lw~~isl~~l~~~~~~~~~~ 182 (184)
.|..+|..+.+.+++.|...|.+.
T Consensus 2 ~~~~l~I~l~i~~li~G~~~Gffi 25 (72)
T PRK00523 2 LAIGLALGLGIPLLIVGGIIGYFV 25 (72)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888888888887653
No 7
>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha
Probab=21.41 E-value=1.2e+02 Score=25.27 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=33.6
Q ss_pred EeceEEEEEEEecCCCceeEEecCc-----eeeEecccchhHHHHHHHHHH
Q 030023 9 YFFVQVEGMQVHANEGGATQTRGGI-----YWLILPAGYLGSSFWGMALVL 54 (184)
Q Consensus 9 ~~gG~v~~I~l~~d~sG~T~s~Gg~-----~~~~~~AGY~gp~l~G~~l~~ 54 (184)
+.|.|+++|++.|= +|.+..+..+ +..++.||.....+.+.....
T Consensus 69 ~~G~~v~~i~l~p~-Gg~~~~~~~~~~~~~~~~IalAGPl~Nllla~i~~~ 118 (227)
T cd06164 69 RYGIPVRSITLFLF-GGVARLEREPETPGQEFVIAIAGPLVSLVLALLFLL 118 (227)
T ss_pred HcCCeECeEEEEee-eEEEEecCCCCCHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 46889999999984 6788776632 278999999999888855443
No 8
>PF03694 Erg28: Erg28 like protein; InterPro: IPR005352 This is a family of integral membrane proteins, which may contain four transmembrane helices. Members of this family are thought to be involved in sterol C-4 demethylation. In Saccharomyces cerevisiae (Baker's yeast) they may tether Erg26p (sterol dehydrogenase/decarboxylase) and Erg27p (3-ketoreductase) to the endoplasmic reticulum or may facilitate interaction between these proteins []. The family contains a conserved arginine and histidine that may be functionally important.; GO: 0016021 integral to membrane
Probab=19.66 E-value=2.8e+02 Score=20.92 Aligned_cols=54 Identities=28% Similarity=0.498 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhccCCCCCcHHHHHhHCCCCCCchhHHHHHHHHHH
Q 030023 110 ILRYVILFIGVMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNGVGWGVIWGIISF 169 (184)
Q Consensus 110 ~l~~~llf~Gv~~~l~~v~dl~~~~~~~~~~~SDA~~LA~lt~~~~Pa~~W~~lw~~isl 169 (184)
.+++-++|+++.....++....+...+++.-+.|. .|.|++ .++.-+ .|.+.|.
T Consensus 3 ~Lp~WLlfVs~~~~~ns~q~y~~~~~~~~vY~~~~---~~vt~L--~aRtFG-~WTl~s~ 56 (111)
T PF03694_consen 3 YLPYWLLFVSVVSLFNSLQCYFSLSLTRRVYSGKP---KQVTPL--SARTFG-TWTLLSA 56 (111)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhChHHHhhccCCCC---CCCCch--hhhhhH-HHHHHHH
Confidence 45666778887766666666666555555444444 334555 555332 3444443
No 9
>PF02470 MCE: mce related protein; InterPro: IPR003399 This domain is found in all 24 mce genes associated with the four mammalian cell entry (mce) operons of Mycobacterium tuberculosis and their homologs in other Actinomycetales [, ]. The archetype (mce1A, Rv0169), was isolated as being necessary for colonisation of, and survival within, the macrophage []. The domain is also found in: Chloroplast Ycf22 and related cyanobacterial homologs, the majority of which have an N-terminal transmembrane domain and are putative ABC transporters. Proteobacterial homologs, which include YrbD, YebT, VpsC and Ttg2C, the latter being annotated as a toluene tolerance proteins, belong to the periplasmic substrate-binding ABC transporter superfamily.
Probab=19.18 E-value=1.3e+02 Score=20.31 Aligned_cols=18 Identities=11% Similarity=0.193 Sum_probs=14.7
Q ss_pred eEEEEEEEecCCCceeEE
Q 030023 12 VQVEGMQVHANEGGATQT 29 (184)
Q Consensus 12 G~v~~I~l~~d~sG~T~s 29 (184)
|+|++|++++|...+.+.
T Consensus 29 G~V~~i~l~~~~~~v~v~ 46 (81)
T PF02470_consen 29 GKVTSIELDPDGNRVRVT 46 (81)
T ss_pred EEEEEEEEcCCCCEEEEE
Confidence 799999998888776654
No 10
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=15.29 E-value=2.8e+02 Score=19.27 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=29.9
Q ss_pred cCCCCCcHHHHHhHCCCC--CC---chhHHHHHHHHHHHHHHHHHHHH
Q 030023 137 RRVHSSDAEKFAEVCPCP--CN---GVGWGVIWGIISFAFLCAAMYLG 179 (184)
Q Consensus 137 ~~~~~SDA~~LA~lt~~~--~P---a~~W~~lw~~isl~~l~~~~~~~ 179 (184)
++...+|++--+++.+.+ .| ...++.++.+++++.++.|+..+
T Consensus 16 r~L~~~DP~fa~~l~~~~~~~~~~r~~~~~~~~~v~gl~llv~G~~~~ 63 (82)
T PF11239_consen 16 RQLRADDPRFAARLRSGRPRRPSRRRRVLGVLLVVVGLALLVAGVVLS 63 (82)
T ss_pred HHHHhcCcHHHHHhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678888888877631 12 24677788888888888888653
Done!