Query 030023
Match_columns 184
No_of_seqs 101 out of 225
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 11:32:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030023.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030023hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oyz_A UPF0345 protein VPA0057 12.5 1.3E+02 0.0043 21.2 2.4 24 6-31 5-28 (94)
2 3sgr_A Tandem repeat of amyloi 9.2 1.7E+02 0.0059 15.3 1.6 12 5-16 7-18 (25)
3 3eo6_A Protein of unknown func 8.8 1.8E+02 0.0061 20.9 2.1 22 6-27 17-39 (106)
4 3hqx_A UPF0345 protein aciad03 7.1 2.4E+02 0.0081 20.4 2.1 18 6-23 18-35 (111)
5 2voy_D Sarcoplasmic/endoplasmi 6.3 2.5E+02 0.0086 14.9 1.5 12 171-182 6-17 (26)
6 2l9w_A U4/U6 snRNA-associated- 6.0 1.6E+02 0.0056 21.5 0.7 18 12-29 51-68 (117)
7 1vjl_A Hypothetical protein TM 5.5 1.3E+02 0.0045 23.0 -0.0 18 138-157 122-139 (164)
8 1v54_C Cytochrome C oxidase po 5.4 9.8E+02 0.033 19.1 5.3 24 158-181 79-102 (261)
9 1jb0_X Photosystem I subunit P 5.0 5.6E+02 0.019 14.6 2.8 19 160-180 15-33 (35)
10 4gs3_A Single-stranded DNA-bin 4.5 5.2E+02 0.018 18.1 2.7 26 4-29 68-93 (107)
No 1
>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22
Probab=12.51 E-value=1.3e+02 Score=21.20 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=18.8
Q ss_pred eEEEeceEEEEEEEecCCCceeEEec
Q 030023 6 TFIYFFVQVEGMQVHANEGGATQTRG 31 (184)
Q Consensus 6 ~~~~~gG~v~~I~l~~d~sG~T~s~G 31 (184)
.-+|+.|||+++.+..+ |.-.|.|
T Consensus 5 aNvYFdGkv~S~~~~~~--G~~~TvG 28 (94)
T 2oyz_A 5 ENSYFAGGVKSLGFNQH--GQDVSVG 28 (94)
T ss_dssp EEEEGGGTEEEEEEEET--TEEEEEE
T ss_pred eeEEeCCeEEEEEEEeC--CCCEEEE
Confidence 35899999999999888 5555555
No 2
>3sgr_A Tandem repeat of amyloid-related segment of alpha crystallin residues 90-100 mutant...; amyloid oligomer, beta cylindrin, protein fibril; 2.17A {Homo sapiens}
Probab=9.21 E-value=1.7e+02 Score=15.28 Aligned_cols=12 Identities=17% Similarity=0.025 Sum_probs=9.3
Q ss_pred ceEEEeceEEEE
Q 030023 5 GTFIYFFVQVEG 16 (184)
Q Consensus 5 ~~~~~~gG~v~~ 16 (184)
|..|.+||+++-
T Consensus 7 gdvievggklkv 18 (25)
T 3sgr_A 7 GDVIEVGGKLKV 18 (26)
T ss_dssp EEEEEETTEEEE
T ss_pred eeeeeeCcEEEE
Confidence 677888998764
No 3
>3eo6_A Protein of unknown function (DUF1255); AFE_2634, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 0.97A {Acidithiobacillus ferrooxidans ATCC23270}
Probab=8.80 E-value=1.8e+02 Score=20.88 Aligned_cols=22 Identities=9% Similarity=-0.133 Sum_probs=16.6
Q ss_pred eEEEeceEEEEEEEec-CCCcee
Q 030023 6 TFIYFFVQVEGMQVHA-NEGGAT 27 (184)
Q Consensus 6 ~~~~~gG~v~~I~l~~-d~sG~T 27 (184)
.-+|+-|||+++.+.. |++=.|
T Consensus 17 aNvYFDGkV~S~~~~~~dG~~kT 39 (106)
T 3eo6_A 17 SRISLDGRRSERSVILADGSMHS 39 (106)
T ss_dssp CEEETTTTEEEEEEEETTSCEEE
T ss_pred eeEEeCCeEEEEEEEeCCCCeEE
Confidence 3489999999999995 554333
No 4
>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0
Probab=7.12 E-value=2.4e+02 Score=20.42 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=14.7
Q ss_pred eEEEeceEEEEEEEecCC
Q 030023 6 TFIYFFVQVEGMQVHANE 23 (184)
Q Consensus 6 ~~~~~gG~v~~I~l~~d~ 23 (184)
.-+|+.|||+++.+..+.
T Consensus 18 aNvYFdGkV~S~~~~~~d 35 (111)
T 3hqx_A 18 SNVYFGGLCISHTVQFED 35 (111)
T ss_dssp CEEETTTTEEEEEEECTT
T ss_pred eEEEeCCeEEEEEEEeCC
Confidence 358999999999999444
No 5
>2voy_D Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; hydrolasep-type ATPase, cryo-EM, helical reconstruction, membrane protein; 17.50A {Oryctolagus cuniculus}
Probab=6.28 E-value=2.5e+02 Score=14.90 Aligned_cols=12 Identities=17% Similarity=0.531 Sum_probs=8.4
Q ss_pred HHHHHHHHHhhh
Q 030023 171 FLCAAMYLGLVI 182 (184)
Q Consensus 171 ~l~~~~~~~~~~ 182 (184)
.+..|+|+|++.
T Consensus 6 y~viG~yvg~aT 17 (26)
T 2voy_D 6 YMAIGGYVGAAT 17 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 466778887764
No 6
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=6.01 E-value=1.6e+02 Score=21.53 Aligned_cols=18 Identities=11% Similarity=0.150 Sum_probs=14.8
Q ss_pred eEEEEEEEecCCCceeEE
Q 030023 12 VQVEGMQVHANEGGATQT 29 (184)
Q Consensus 12 G~v~~I~l~~d~sG~T~s 29 (184)
|.+..|.|.||+.|.-+-
T Consensus 51 g~i~KI~L~pDH~GAive 68 (117)
T 2l9w_A 51 KDIRKILLVSDFNGAIII 68 (117)
T ss_dssp TTCSEEEEETTTTEEEEE
T ss_pred cceeEEEEecCCCceEEE
Confidence 457889999999998754
No 7
>1vjl_A Hypothetical protein TM0160; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: d.257.1.1 PDB: 1sj5_A
Probab=5.48 E-value=1.3e+02 Score=23.01 Aligned_cols=18 Identities=22% Similarity=-0.034 Sum_probs=15.4
Q ss_pred CCCCCcHHHHHhHCCCCCCc
Q 030023 138 RVHSSDAEKFAEVCPCPCNG 157 (184)
Q Consensus 138 ~~~~SDA~~LA~lt~~~~Pa 157 (184)
..++|||-.||-.+++ |-
T Consensus 122 DaRPSDAIaLAlR~~~--PI 139 (164)
T 1vjl_A 122 DSRPSDAIILAVKTGA--PI 139 (164)
T ss_dssp EECHHHHHHHHHHHTC--CE
T ss_pred ECcHHHHHHHHHHHCC--CE
Confidence 4689999999999988 64
No 8
>1v54_C Cytochrome C oxidase polypeptide III; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.25.1.1 PDB: 1v55_C* 2dyr_C* 2eij_C* 2eik_C* 2eil_C* 2eim_C* 2ein_C* 2y69_C* 2ybb_N* 2zxw_C* 3abk_C* 3abl_C* 3abm_C* 3ag1_C* 3ag2_C* 3ag3_C* 3ag4_C* 3asn_C* 3aso_C* 2occ_C* ...
Probab=5.37 E-value=9.8e+02 Score=19.09 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Q 030023 158 VGWGVIWGIISFAFLCAAMYLGLV 181 (184)
Q Consensus 158 ~~W~~lw~~isl~~l~~~~~~~~~ 181 (184)
.-|+..+.++|-+++..+...++.
T Consensus 79 ~~~Gm~lfi~SE~~~F~~~f~ayf 102 (261)
T 1v54_C 79 LRYGMILFIISEVLFFTGFFWAFY 102 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888877766653
No 9
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=4.98 E-value=5.6e+02 Score=14.60 Aligned_cols=19 Identities=42% Similarity=0.761 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 030023 160 WGVIWGIISFAFLCAAMYLGL 180 (184)
Q Consensus 160 W~~lw~~isl~~l~~~~~~~~ 180 (184)
|+++.+.+ =+++++.|.-+
T Consensus 15 WalllLaI--NflVAayYFhi 33 (35)
T 1jb0_X 15 WAVLLLAI--NFLVAAYYFAA 33 (35)
T ss_dssp HHHHHHHH--HHHHHHHHHTS
T ss_pred HHHHHHHH--HHHHHHHHHhh
Confidence 98865554 56777777644
No 10
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=4.53 E-value=5.2e+02 Score=18.13 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=14.9
Q ss_pred cceEEEeceEEEEEEEecCCCceeEE
Q 030023 4 RGTFIYFFVQVEGMQVHANEGGATQT 29 (184)
Q Consensus 4 ~~~~~~~gG~v~~I~l~~d~sG~T~s 29 (184)
+|+.++.-||++..+=+-|+.|-..+
T Consensus 68 kG~~v~v~G~lrsy~~~~~~dG~~R~ 93 (107)
T 4gs3_A 68 VGTRVKIEGQLRSYNRKSPEEGKNKL 93 (107)
T ss_dssp TTCEEEEEEEEEEEECC--------E
T ss_pred CCCEEEEEEEEEecceEECCCCCEEE
Confidence 79999999999877666666665543
Done!