Query 030023
Match_columns 184
No_of_seqs 101 out of 225
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 11:32:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030023.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030023hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2oyza1 b.82.1.22 (A:2-94) Unc 22.5 20 0.0015 23.7 1.9 21 7-27 5-25 (93)
2 d1rl2a2 b.40.4.5 (A:60-125) N- 11.8 54 0.0039 20.0 1.9 17 11-27 15-31 (66)
3 d1xmeb2 f.17.2.1 (B:3-36) Bact 7.8 1.6E+02 0.012 15.1 2.5 14 163-176 15-28 (34)
4 d1q90l_ f.23.24.1 (L:) PetL su 7.7 1.6E+02 0.012 14.9 2.9 18 166-183 11-28 (32)
5 d1xn7a_ a.4.5.62 (A:) Hypothet 7.5 1.3E+02 0.0098 18.7 2.5 14 140-153 15-28 (78)
6 d1v8ha1 b.1.18.19 (A:2-107) Su 7.3 72 0.0053 20.9 1.2 18 12-29 16-36 (106)
7 d1bu8a1 b.12.1.2 (A:337-449) P 6.9 73 0.0053 20.6 1.1 16 12-27 58-73 (114)
8 d1rp1a1 b.12.1.2 (A:337-449) P 6.3 69 0.005 20.8 0.6 16 12-27 57-72 (113)
9 d1vqoa2 b.40.4.5 (A:1-90) N-te 5.7 1.7E+02 0.012 18.5 2.4 18 10-27 38-55 (90)
10 d1wosa1 b.44.2.1 (A:279-361) G 5.0 2E+02 0.015 16.9 2.4 22 13-34 2-26 (83)
No 1
>d2oyza1 b.82.1.22 (A:2-94) Uncharacterized protein VPA0057 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=22.48 E-value=20 Score=23.69 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=17.2
Q ss_pred EEEeceEEEEEEEecCCCcee
Q 030023 7 FIYFFVQVEGMQVHANEGGAT 27 (184)
Q Consensus 7 ~~~~gG~v~~I~l~~d~sG~T 27 (184)
-+|+.|+|+++.+.+|++--|
T Consensus 5 NvYFdGkV~S~~~~~dg~~kT 25 (93)
T d2oyza1 5 NSYFAGGVKSLGFNQHGQDVS 25 (93)
T ss_dssp EEEGGGTEEEEEEEETTEEEE
T ss_pred EEEECCEEEEEEEecCCCeeE
Confidence 479999999999987776555
No 2
>d1rl2a2 b.40.4.5 (A:60-125) N-terminal domain of ribosomal protein L2 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=11.79 E-value=54 Score=19.99 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=15.1
Q ss_pred ceEEEEEEEecCCCcee
Q 030023 11 FVQVEGMQVHANEGGAT 27 (184)
Q Consensus 11 gG~v~~I~l~~d~sG~T 27 (184)
-|+|.+|+=|||.|...
T Consensus 15 ~g~V~~IEYDPnRsa~I 31 (66)
T d1rl2a2 15 PGRVATIEYDPNRSANI 31 (66)
T ss_dssp CEEEEEEEEEGGGTEEE
T ss_pred CEEEEEEEeCCCCCeEE
Confidence 48999999999999865
No 3
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=7.80 E-value=1.6e+02 Score=15.08 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHH
Q 030023 163 IWGIISFAFLCAAM 176 (184)
Q Consensus 163 lw~~isl~~l~~~~ 176 (184)
-|+.+|++++...+
T Consensus 15 gwlafslamlfvfi 28 (34)
T d1xmeb2 15 GWLAFSLAMLFVFI 28 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 47888888776654
No 4
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.69 E-value=1.6e+02 Score=14.93 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 030023 166 IISFAFLCAAMYLGLVIL 183 (184)
Q Consensus 166 ~isl~~l~~~~~~~~~~~ 183 (184)
++....+-.|+|+|+..+
T Consensus 11 ligal~~tlgiylgllkv 28 (32)
T d1q90l_ 11 LIGALVFTLGIYLGLLKV 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344456677889888654
No 5
>d1xn7a_ a.4.5.62 (A:) Hypothetical protein YhgG {Escherichia coli [TaxId: 562]}
Probab=7.50 E-value=1.3e+02 Score=18.73 Aligned_cols=14 Identities=7% Similarity=0.109 Sum_probs=12.1
Q ss_pred CCCcHHHHHhHCCC
Q 030023 140 HSSDAEKFAEVCPC 153 (184)
Q Consensus 140 ~~SDA~~LA~lt~~ 153 (184)
..-||+|+++..+.
T Consensus 15 G~~da~qlS~qL~~ 28 (78)
T d1xn7a_ 15 GRMEAAQISQTLNT 28 (78)
T ss_dssp CSBCHHHHHHHTTC
T ss_pred CcccHHHHHHHHcC
Confidence 44699999999988
No 6
>d1v8ha1 b.1.18.19 (A:2-107) Sulfur oxidation protein SoxZ {Thermus thermophilus [TaxId: 274]}
Probab=7.33 E-value=72 Score=20.91 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=12.7
Q ss_pred eEEEEEEE---ecCCCceeEE
Q 030023 12 VQVEGMQV---HANEGGATQT 29 (184)
Q Consensus 12 G~v~~I~l---~~d~sG~T~s 29 (184)
|.+..+++ ||+++|.-.-
T Consensus 16 G~v~~vk~li~HPMeTG~r~d 36 (106)
T d1v8ha1 16 GEEFRLQVVAQHPNEPGTRRD 36 (106)
T ss_dssp TCEEEEEEEECCCCBCSCCBC
T ss_pred CCeEEEEEEEECCCccccccC
Confidence 55555555 9999998643
No 7
>d1bu8a1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.90 E-value=73 Score=20.57 Aligned_cols=16 Identities=6% Similarity=-0.001 Sum_probs=10.5
Q ss_pred eEEEEEEEecCCCcee
Q 030023 12 VQVEGMQVHANEGGAT 27 (184)
Q Consensus 12 G~v~~I~l~~d~sG~T 27 (184)
|++++|++..|.+|..
T Consensus 58 G~l~~i~i~hdn~g~~ 73 (114)
T d1bu8a1 58 GEIQKVKFLWNNKVIN 73 (114)
T ss_dssp CSEEEEEEEEEC----
T ss_pred CCcEEEEEEECCCcCC
Confidence 7888999988888765
No 8
>d1rp1a1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain {Dog (Canis familiaris) [TaxId: 9615]}
Probab=6.28 E-value=69 Score=20.78 Aligned_cols=16 Identities=13% Similarity=0.052 Sum_probs=12.1
Q ss_pred eEEEEEEEecCCCcee
Q 030023 12 VQVEGMQVHANEGGAT 27 (184)
Q Consensus 12 G~v~~I~l~~d~sG~T 27 (184)
|++++|++..|.+|..
T Consensus 57 G~l~~v~i~hdn~g~~ 72 (113)
T d1rp1a1 57 GTIEKVKFLWNNNVVN 72 (113)
T ss_dssp SSEEEEEEEEEEC--C
T ss_pred CCcEEEEEEECCCCCC
Confidence 7899999999888754
No 9
>d1vqoa2 b.40.4.5 (A:1-90) N-terminal domain of ribosomal protein L2 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=5.75 E-value=1.7e+02 Score=18.48 Aligned_cols=18 Identities=6% Similarity=0.025 Sum_probs=15.3
Q ss_pred eceEEEEEEEecCCCcee
Q 030023 10 FFVQVEGMQVHANEGGAT 27 (184)
Q Consensus 10 ~gG~v~~I~l~~d~sG~T 27 (184)
.-|+|+.|+=+||.|.-.
T Consensus 38 i~g~V~~IeyDP~Rsa~i 55 (90)
T d1vqoa2 38 IAGTVVDIEHDPARSAPV 55 (90)
T ss_dssp CEEEEEEEEEETTTTEEE
T ss_pred ccEEEEEEEecCCCCceE
Confidence 458999999999998754
No 10
>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]}
Probab=4.99 E-value=2e+02 Score=16.92 Aligned_cols=22 Identities=9% Similarity=0.217 Sum_probs=11.3
Q ss_pred EEEEEEEec---CCCceeEEecCce
Q 030023 13 QVEGMQVHA---NEGGATQTRGGIY 34 (184)
Q Consensus 13 ~v~~I~l~~---d~sG~T~s~Gg~~ 34 (184)
|+.+++++. ...|..+...+..
T Consensus 2 rlvGl~i~~~~~~~~g~~I~~~g~~ 26 (83)
T d1wosa1 2 KLVALELSGKRIARKGYEVLKNGER 26 (83)
T ss_dssp EEEEEEESSSCCCCTTCEEEETTEE
T ss_pred eEEEEEECCCcCCCCCCEEEECCEE
Confidence 455666643 2455555555433
Done!