BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030024
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QWG|A Chain A, Crystal Structure Of Methanococcus Jannaschii
Phosphosulfolactate Synthase
Length = 251
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV-STGDWAEHLIRNGPS 101
+ED + G ++D +KF G+ +++ + ++E + + V G E+ G
Sbjct: 28 VEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKGK- 86
Query: 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 144
F E++ +C+++GF+ +E++ GS +I E ++ K G
Sbjct: 87 -FDEFLNECEKLGFEAVEISDGSSDISLEERNNAIKRAKDNGF 128
>pdb|4F7C|A Chain A, Crystal Structure Of Bovine Cd1d With Bound
C12-Di-Sulfatide
pdb|4F7C|C Chain C, Crystal Structure Of Bovine Cd1d With Bound
C12-Di-Sulfatide
pdb|4F7E|A Chain A, Crystal Structure Of Bovine Cd1d With Bound
C16:0-Alpha-Galactosyl Ceramide
Length = 283
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPK--PFIEEVVKRAHQHDVYVSTGDWAEHLIRN 98
N+ E + Q D L F G S P PFI+EV+K +Q+ T W H I
Sbjct: 108 NISESFLRAAFQGRDVLSFQGMSWVSAPDAPPFIQEVIKVLNQNQGTKETVHWLLHDI-- 165
Query: 99 GPSAFKEYVEDCKQVGFDTIELNV 122
+ E V Q G +E V
Sbjct: 166 ----WPELVRGVLQTGKSELEKQV 185
>pdb|2FYN|B Chain B, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|E Chain E, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|H Chain H, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|K Chain K, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|N Chain N, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|Q Chain Q, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2QJY|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|E Chain E, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|H Chain H, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|K Chain K, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|N Chain N, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|Q Chain Q, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
Length = 269
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 19/105 (18%)
Query: 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDC--- 110
+G+K + GS MP P ++++V+ A HD V H + SAF + +
Sbjct: 172 ANGVKTTAGSWIAMPPPLMDDLVEYADGHDASV-------HAMAEDVSAFLMWAAEPKLM 224
Query: 111 --KQVGFDTIE-LNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152
KQ GF + L V S+ LL AG+K K K V
Sbjct: 225 ARKQAGFTAVMFLTVLSV------LLYLTNKRLWAGVKGKKKTNV 263
>pdb|2QJK|B Chain B, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|E Chain E, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|H Chain H, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|K Chain K, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|N Chain N, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|Q Chain Q, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJP|B Chain B, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|E Chain E, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|H Chain H, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|K Chain K, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
Length = 256
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 12/70 (17%)
Query: 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDC--- 110
+G+K + GS MP P ++++V+ A HD V H + SAF + +
Sbjct: 172 ANGVKTTAGSWIAMPPPLMDDLVEYADGHDASV-------HAMAEDVSAFLMWAAEPKLM 224
Query: 111 --KQVGFDTI 118
KQ GF +
Sbjct: 225 ARKQAGFTAV 234
>pdb|2D2Z|A Chain A, Crystal Structure Of Soluble Form Of Clic4
pdb|2D2Z|B Chain B, Crystal Structure Of Soluble Form Of Clic4
pdb|2D2Z|C Chain C, Crystal Structure Of Soluble Form Of Clic4
Length = 261
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 40 HNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH 82
N +EDI S +F+DG + + +L+PK I +VV + +++
Sbjct: 165 ENSMEDIKFSTRKFLDGNEMTLADCNLLPKLHIVKVVAKKYRN 207
>pdb|2AHE|A Chain A, Crystal Structure Of A Soluble Form Of Clic4.
Intercellular Chloride Ion Channel
Length = 267
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 40 HNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH 82
N +EDI S +F+DG + + +L+PK I +VV + +++
Sbjct: 165 ENSMEDIKFSTRKFLDGNEMTLADCNLLPKLHIVKVVAKKYRN 207
>pdb|1B4E|A Chain A, X-Ray Structure Of 5-Aminolevulinic Acid Dehydratase
Complexed With The Inhibitor Levulinic Acid
Length = 323
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 115 FDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174
+ +E G + IPE+ L R + + +AG+++ F + + + SD R G VAR
Sbjct: 43 YKAVEAMPGVMRIPEKHLAREIERIANAGIRSVMTFGISHHTDETGSDAWREDG-LVARM 101
Query: 175 PR 176
R
Sbjct: 102 SR 103
>pdb|1I8J|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1I8J|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
Length = 323
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 115 FDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174
+ +E G + IPE+ L R + + +AG+++ F + + + SD R G VAR
Sbjct: 43 YKAVEAMPGVMRIPEKHLAREIERIANAGIRSVMTFGISHHTDETGSDAWREDG-LVARM 101
Query: 175 PR 176
R
Sbjct: 102 SR 103
>pdb|1L6S|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1L6S|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4,7-Dioxosebacic Acid
pdb|1L6Y|A Chain A, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4-Oxosebacic Acid
pdb|1L6Y|B Chain B, Crystal Structure Of Porphobilinogen Synthase Complexed
With The Inhibitor 4-Oxosebacic Acid
Length = 323
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 115 FDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 174
+ +E G + IPE+ L R + + +AG+++ F + + + SD R G VAR
Sbjct: 43 YKAVEAMPGVMRIPEKHLAREIERIANAGIRSVMTFGISHHTDETGSDAWREDG-LVARM 101
Query: 175 PR 176
R
Sbjct: 102 SR 103
>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
Length = 921
Score = 27.7 bits (60), Expect = 4.2, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 11/69 (15%)
Query: 62 GSHSLMPKPFIEEVVKRAHQHDVYVSTGD----------WAEHLIRNGPSAFKEYVEDCK 111
G H P ++EV+ AH D + + EH + GP K ++ K
Sbjct: 421 GDHEQTPANPVDEVIYEAHVRDFSIDANSGMKNKGKYLAFTEHGTK-GPDHVKTGIDSLK 479
Query: 112 QVGFDTIEL 120
++G T++L
Sbjct: 480 ELGITTVQL 488
>pdb|1NVM|A Chain A, Crystal Structure Of A Bifunctional Aldolase-Dehydrogenase
: Sequestering A Reactive And Volatile Intermediate
pdb|1NVM|C Chain C, Crystal Structure Of A Bifunctional Aldolase-Dehydrogenase
: Sequestering A Reactive And Volatile Intermediate
pdb|1NVM|E Chain E, Crystal Structure Of A Bifunctional Aldolase-Dehydrogenase
: Sequestering A Reactive And Volatile Intermediate
pdb|1NVM|G Chain G, Crystal Structure Of A Bifunctional Aldolase-Dehydrogenase
: Sequestering A Reactive And Volatile Intermediate
Length = 345
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK----AKPKFAVMFNKSDI 159
K+++E + +G DT+ + S IP E L +L++S G A A+ N DI
Sbjct: 123 KQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYMADSGGAMSMN--DI 180
Query: 160 PSDRDRAFGAYV 171
DR RAF A +
Sbjct: 181 -RDRMRAFKAVL 191
>pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus
pdb|1BJW|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus
Length = 382
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 65 SLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNG 99
++ PK +E + + A +HD Y+ + + EHL+ G
Sbjct: 179 AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG 213
>pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single
Mutant 1
pdb|1B5O|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Single
Mutant 1
Length = 385
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 65 SLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNG 99
++ PK +E + + A +HD Y+ + + EHL+ G
Sbjct: 179 AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG 213
>pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
Length = 385
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 63 SHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNG 99
+ ++ PK +E + + A +HD Y+ + + EHL+ G
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG 213
>pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|C Chain C, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|D Chain D, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
Length = 385
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 63 SHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNG 99
+ ++ PK +E + + A +HD Y+ + + EHL+ G
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG 213
>pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
pdb|1GCK|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
pdb|1B5P|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1
pdb|1B5P|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1
Length = 385
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 63 SHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNG 99
+ ++ PK +E + + A +HD Y+ + + EHL+ G
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG 213
>pdb|3BWV|A Chain A, Crystal Structure Of Deoxyribonucleotidase-like Protein
(np_764060.1) From Staphylococcus Epidermidis Atcc
12228 At 1.55 A Resolution
pdb|3BWV|B Chain B, Crystal Structure Of Deoxyribonucleotidase-like Protein
(np_764060.1) From Staphylococcus Epidermidis Atcc
12228 At 1.55 A Resolution
Length = 180
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 48 ESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTG 89
E G D LK G +L P +EVVK+ ++H D+Y++T
Sbjct: 50 EHEGLVXDILKEPGFFRNLDVXPHAQEVVKQLNEHYDIYIATA 92
>pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|E Chain E, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|F Chain F, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|G Chain G, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|H Chain H, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC4|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|5BJ4|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2
pdb|5BJ4|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2
Length = 385
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 63 SHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNG 99
+ ++ PK +E + + A +HD Y+ + + EHL+ G
Sbjct: 177 TGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG 213
>pdb|2E5V|A Chain A, Crystal Structure Of L-Aspartate Oxidase From
Hyperthermophilic Archaeon Sulfolobus Tokodaii
pdb|2E5V|B Chain B, Crystal Structure Of L-Aspartate Oxidase From
Hyperthermophilic Archaeon Sulfolobus Tokodaii
Length = 472
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 25 GVTEMRSPHYTLSSSHNVLEDIFESMG-QFVDGLKFSGG 62
G+ ++++ +Y S + NV+E FES G +F + L+ GG
Sbjct: 67 GLCDVKTVNYVTSEAKNVIET-FESWGFEFEEDLRLEGG 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,960,436
Number of Sequences: 62578
Number of extensions: 244183
Number of successful extensions: 573
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 555
Number of HSP's gapped (non-prelim): 24
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)