BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030024
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O27710|PSLS_METTH Phosphosulfolactate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=comA PE=3 SV=1
Length = 258
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 11/151 (7%)
Query: 17 RAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVV 76
R+ KPR+ G+T + +S+ D+ E +VD +KF G+ L + ++E V
Sbjct: 11 RSGKPRKNGITMVLDKGMGPASAR----DLMEISSDYVDFIKFGWGTLPLHRRDTVKEKV 66
Query: 77 KRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYV 136
DV G I + +EY ++ + +GF+T+E++ G++EI E R +
Sbjct: 67 DMYRSFDVEPYPGGTLFE-IAHLNDKVEEYFQEARSLGFETLEISNGTVEIETEEKCRLI 125
Query: 137 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF 167
+ G F V+ +RDR
Sbjct: 126 EMAVDEG------FMVLSEVGKKDPERDRLL 150
>sp|Q57703|PSLS_METJA Phosphosulfolactate synthase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=comA PE=1 SV=1
Length = 251
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV-STGDWAEHLIRNGPS 101
+ED + G ++D +KF G+ +++ + ++E + + V G E+ G
Sbjct: 28 VEDYLKVCGDYIDFVKFGWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKGK- 86
Query: 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 144
F E++ +C+++GF+ +E++ GS +I E ++ K G
Sbjct: 87 -FDEFLNECEKLGFEAVEISDGSSDISLEERKNAIKRAKDNGF 128
>sp|Q9AF21|PSLS_XANP2 Phosphosulfolactate synthase OS=Xanthobacter autotrophicus (strain
ATCC BAA-1158 / Py2) GN=xecG PE=3 SV=2
Length = 303
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 64/142 (45%), Gaps = 8/142 (5%)
Query: 5 YYGWKSFDEYEDR-AEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGS 63
+ G + D DR +PR+ G+T + ++ L DI ++D K + G+
Sbjct: 11 WRGVLALDAAIDRRVTQPRKRGITMVIDKGIGPAA----LADIDAVAAPYIDHWKLAFGT 66
Query: 64 HSLMPKPFIEEVVKRAHQHDVYV-STGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122
+LMP + + + + V G E + + +++ +++GF +E++
Sbjct: 67 SALMPPQVLADKLAFLRERGVLTYPGGTLLEAAVVQ--QHCRVFMQRAEELGFTAVEISD 124
Query: 123 GSLEIPEETLLRYVRLVKSAGL 144
G++++P + R + + AGL
Sbjct: 125 GTIDLPRDRRRRIIDCAREAGL 146
>sp|Q6P7H4|NIPA_XENLA NIPA-like protein OS=Xenopus laevis GN=zc3hc1 PE=2 SV=1
Length = 477
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 72 IEEVVKRAHQHDVYVSTGDWAEH----LIRNGPSAFKEYVEDCKQVGFDTIEL------N 121
++E +++AH+ + EH L+ S ++VE + ++L +
Sbjct: 137 LQEALRKAHEKFCFWPDSPCPEHFWALLVTEPSSVLSDFVERFHNLCHLEMQLPSLKHED 196
Query: 122 VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSD 162
V S++I E+T+ R +RL++ + KPK N +PSD
Sbjct: 197 VKSMDITEDTVSRLLRLIED---ELKPKEGREANSHSLPSD 234
>sp|P0C064|GRSB_BREBE Gramicidin S synthase 2 OS=Brevibacillus brevis GN=grsB PE=1 SV=2
Length = 4450
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 27/154 (17%)
Query: 10 SFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPK 69
+F + AE+ +R + + L +++NVL + + V G +G SH+
Sbjct: 2307 TFSAGKQLAEELKRLATETGTTLYMLLLAAYNVLLHKYSGQEEIVVGTPIAGRSHA---- 2362
Query: 70 PFIEEVVKRAHQHDVYVSTGDWAEHL-IRNGPSA---FKEYVEDCKQVGFDTIELNVGSL 125
DV G + L ++N P A F E++ + KQ + E +
Sbjct: 2363 -------------DVENIVGMFVNTLALKNTPIAVRTFHEFLLEVKQNALEAFE----NQ 2405
Query: 126 EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDI 159
+ P E L+ +++ + L P F MF+ S+I
Sbjct: 2406 DYPFENLIEKLQVRRD--LSRNPLFDTMFSLSNI 2437
>sp|P0C063|GRSB_ANEMI Gramicidin S synthase 2 OS=Aneurinibacillus migulanus GN=grsB PE=3
SV=2
Length = 4451
Score = 30.4 bits (67), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 27/154 (17%)
Query: 10 SFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPK 69
+F + AE+ +R + + L +++NVL + + V G +G SH+
Sbjct: 2307 TFSAGKQLAEELKRLAAETGTTLYMLLLAAYNVLLHKYSGQEEIVVGTPIAGRSHA---- 2362
Query: 70 PFIEEVVKRAHQHDVYVSTGDWAEHL-IRNGPSA---FKEYVEDCKQVGFDTIELNVGSL 125
DV G + L ++N P A F E++ + KQ + E +
Sbjct: 2363 -------------DVENIVGMFVNTLALKNTPIAVRTFHEFLLEVKQNALEAFE----NQ 2405
Query: 126 EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDI 159
+ P E L+ +++ + L P F MF+ S+I
Sbjct: 2406 DYPFENLIEKLQVRRD--LSRNPLFDTMFSLSNI 2437
>sp|Q7NAZ6|ACKA_MYCGA Acetate kinase OS=Mycoplasma gallisepticum (strain R(low / passage
15 / clone 2)) GN=ackA PE=3 SV=2
Length = 388
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 22/139 (15%)
Query: 7 GWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGG---S 63
G Y D + T++ YT + +L+ + +DGL F+ G +
Sbjct: 267 GLLGLSSYADMRDVTSNLPKTQLTLDVYTQRVADYILK-YANQINASIDGLVFTAGVGEN 325
Query: 64 HSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG 123
SL+ I+EVV + H V + P AF++ D +++ D +LNV
Sbjct: 326 ASLI----IQEVVNKVHLLKVSLD------------PKAFEQKYSDYRKLSDDKSQLNVY 369
Query: 124 SLEIPEETLLR--YVRLVK 140
+ EE ++ VRL K
Sbjct: 370 QVRTNEEIMIMRDVVRLSK 388
>sp|B7IP83|GPDA_BACC2 Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Bacillus cereus
(strain G9842) GN=gpsA PE=3 SV=1
Length = 340
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIE 73
LE++ ESMG V+G++ + +H L K +E
Sbjct: 270 LEEVLESMGMVVEGVRTTKAAHELAEKMEVE 300
>sp|B9IVM7|GPDA_BACCQ Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Bacillus cereus
(strain Q1) GN=gpsA PE=3 SV=1
Length = 340
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIE 73
LE++ ESMG V+G++ + +H L K +E
Sbjct: 270 LEEVLESMGMVVEGVRTTKAAHELAEKMEVE 300
>sp|B7HL15|GPDA_BACC7 Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Bacillus cereus
(strain AH187) GN=gpsA PE=3 SV=1
Length = 340
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIE 73
LE++ ESMG V+G++ + +H L K +E
Sbjct: 270 LEEVLESMGMVVEGVRTTKAAHELAEKMEVE 300
>sp|P61737|GPDA_BACC1 Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Bacillus cereus
(strain ATCC 10987) GN=gpsA PE=3 SV=1
Length = 340
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIE 73
LE++ ESMG V+G++ + +H L K +E
Sbjct: 270 LEEVLESMGMVVEGVRTTKAAHELAEKMEVE 300
>sp|Q6HL50|GPDA_BACHK Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Bacillus
thuringiensis subsp. konkukian (strain 97-27) GN=gpsA
PE=3 SV=1
Length = 340
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIE 73
LE++ ESMG V+G++ + +H L K +E
Sbjct: 270 LEEVLESMGMVVEGVRTTKAAHELAEKMEVE 300
>sp|Q63DM7|GPDA_BACCZ Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Bacillus cereus
(strain ZK / E33L) GN=gpsA PE=3 SV=1
Length = 340
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIE 73
LE++ ESMG V+G++ + +H L K +E
Sbjct: 270 LEEVLESMGMVVEGVRTTKAAHELAEKMEVE 300
>sp|Q81FR4|GPDA_BACCR Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Bacillus cereus
(strain ATCC 14579 / DSM 31) GN=gpsA PE=3 SV=1
Length = 340
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIE 73
LE++ ESMG V+G++ + +H L K +E
Sbjct: 270 LEEVLESMGMVVEGVRTTKAAHELAEKMEVE 300
>sp|B7HHQ8|GPDA_BACC4 Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Bacillus cereus
(strain B4264) GN=gpsA PE=3 SV=1
Length = 340
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIE 73
LE++ ESMG V+G++ + +H L K +E
Sbjct: 270 LEEVLESMGMVVEGVRTTKAAHELAEKMEVE 300
>sp|C1EN02|GPDA_BACC3 Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Bacillus cereus
(strain 03BB102) GN=gpsA PE=3 SV=1
Length = 340
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIE 73
LE++ ESMG V+G++ + +H L K +E
Sbjct: 270 LEEVLESMGMVVEGVRTTKAAHELAEKMEVE 300
>sp|B7JGZ0|GPDA_BACC0 Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Bacillus cereus
(strain AH820) GN=gpsA PE=3 SV=1
Length = 340
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIE 73
LE++ ESMG V+G++ + +H L K +E
Sbjct: 270 LEEVLESMGMVVEGVRTTKAAHELAEKMEVE 300
>sp|A0RBW0|GPDA_BACAH Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Bacillus
thuringiensis (strain Al Hakam) GN=gpsA PE=3 SV=1
Length = 340
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIE 73
LE++ ESMG V+G++ + +H L K +E
Sbjct: 270 LEEVLESMGMVVEGVRTTKAAHELAEKMEVE 300
>sp|Q81SW8|GPDA_BACAN Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Bacillus anthracis
GN=gpsA PE=3 SV=1
Length = 340
Score = 30.0 bits (66), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIE 73
LE++ ESMG V+G++ + +H L K +E
Sbjct: 270 LEEVLESMGMVVEGVRTTKAAHELAEKMEVE 300
>sp|C3L9F3|GPDA_BACAC Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Bacillus anthracis
(strain CDC 684 / NRRL 3495) GN=gpsA PE=3 SV=1
Length = 340
Score = 30.0 bits (66), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIE 73
LE++ ESMG V+G++ + +H L K +E
Sbjct: 270 LEEVLESMGMVVEGVRTTKAAHELAEKMEVE 300
>sp|C3P592|GPDA_BACAA Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Bacillus anthracis
(strain A0248) GN=gpsA PE=3 SV=1
Length = 340
Score = 30.0 bits (66), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIE 73
LE++ ESMG V+G++ + +H L K +E
Sbjct: 270 LEEVLESMGMVVEGVRTTKAAHELAEKMEVE 300
>sp|A9VMB4|GPDA_BACWK Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Bacillus
weihenstephanensis (strain KBAB4) GN=gpsA PE=3 SV=1
Length = 340
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIE 73
LE++ ESMG V+G++ + +H L K +E
Sbjct: 270 LEEVLESMGMVVEGVRTTKAAHELAEKMEVE 300
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,706,636
Number of Sequences: 539616
Number of extensions: 2946114
Number of successful extensions: 6795
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 6790
Number of HSP's gapped (non-prelim): 28
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)