Query 030024
Match_columns 184
No_of_seqs 104 out of 172
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 07:20:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030024.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030024hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02679 ComA: (2R)-phospho-3- 100.0 3.6E-57 7.8E-62 388.6 11.2 142 13-160 1-143 (244)
2 TIGR03849 arch_ComA phosphosul 100.0 6.3E-51 1.4E-55 348.7 14.4 128 26-159 1-129 (237)
3 COG1809 (2R)-phospho-3-sulfola 100.0 7.2E-50 1.6E-54 340.0 12.4 145 8-158 1-147 (258)
4 PRK06294 coproporphyrinogen II 96.2 0.013 2.9E-07 52.8 6.8 87 52-145 57-154 (370)
5 PRK08446 coproporphyrinogen II 96.1 0.025 5.5E-07 50.6 7.9 88 53-145 51-149 (350)
6 PRK13209 L-xylulose 5-phosphat 95.8 0.012 2.6E-07 49.9 4.4 58 90-148 11-75 (283)
7 PRK05628 coproporphyrinogen II 95.8 0.033 7.2E-07 50.0 7.4 91 52-146 58-161 (375)
8 PRK07379 coproporphyrinogen II 95.4 0.051 1.1E-06 49.6 7.2 91 52-145 65-166 (400)
9 COG0826 Collagenase and relate 95.3 0.098 2.1E-06 47.6 8.4 93 42-147 15-117 (347)
10 TIGR00539 hemN_rel putative ox 95.2 0.065 1.4E-06 47.9 6.9 98 53-153 51-162 (360)
11 PRK05904 coproporphyrinogen II 95.1 0.093 2E-06 47.3 7.8 89 52-145 55-154 (353)
12 cd06547 GH85_ENGase Endo-beta- 95.1 0.093 2E-06 47.5 7.7 89 51-142 30-134 (339)
13 TIGR00538 hemN oxygen-independ 95.0 0.078 1.7E-06 49.0 7.2 90 53-145 102-202 (455)
14 cd07944 DRE_TIM_HOA_like 4-hyd 95.0 0.089 1.9E-06 45.7 7.0 108 24-142 72-179 (266)
15 PRK13210 putative L-xylulose 5 95.0 0.056 1.2E-06 45.6 5.6 57 90-147 6-69 (284)
16 PRK08195 4-hyroxy-2-oxovalerat 94.6 0.18 4E-06 45.4 8.2 118 24-153 78-195 (337)
17 PRK05660 HemN family oxidoredu 94.6 0.077 1.7E-06 48.1 5.8 92 52-146 57-159 (378)
18 PRK13347 coproporphyrinogen II 94.6 0.14 3.1E-06 47.4 7.7 89 53-145 103-203 (453)
19 PRK08208 coproporphyrinogen II 94.5 0.13 2.7E-06 47.4 7.1 91 54-146 92-193 (430)
20 cd07937 DRE_TIM_PC_TC_5S Pyruv 94.5 0.18 3.9E-06 43.9 7.7 104 32-142 83-190 (275)
21 PRK09249 coproporphyrinogen II 94.2 0.12 2.6E-06 47.8 6.4 89 53-144 102-201 (453)
22 TIGR03551 F420_cofH 7,8-dideme 93.9 0.7 1.5E-05 41.2 10.3 114 39-155 71-202 (343)
23 TIGR03217 4OH_2_O_val_ald 4-hy 93.8 0.33 7.2E-06 43.7 8.3 119 24-154 77-195 (333)
24 PRK13111 trpA tryptophan synth 93.8 0.28 6E-06 42.8 7.4 106 39-151 24-150 (258)
25 cd07939 DRE_TIM_NifV Streptomy 93.7 0.26 5.7E-06 42.1 7.1 106 44-154 73-189 (259)
26 PRK06582 coproporphyrinogen II 93.5 0.28 6E-06 44.9 7.3 91 52-146 61-163 (390)
27 cd07943 DRE_TIM_HOA 4-hydroxy- 93.3 0.42 9E-06 41.0 7.7 118 24-154 75-192 (263)
28 TIGR00542 hxl6Piso_put hexulos 93.3 0.15 3.2E-06 43.4 4.9 55 92-147 8-69 (279)
29 PRK08599 coproporphyrinogen II 93.2 1.1 2.3E-05 40.3 10.5 89 53-145 51-151 (377)
30 PRK09057 coproporphyrinogen II 93.2 0.17 3.8E-06 45.7 5.4 92 52-146 54-156 (380)
31 COG0159 TrpA Tryptophan syntha 92.8 0.52 1.1E-05 41.8 7.7 106 39-151 29-155 (265)
32 TIGR02668 moaA_archaeal probab 92.8 1.5 3.3E-05 37.8 10.5 52 39-92 41-97 (302)
33 PLN02591 tryptophan synthase 92.8 0.48 1E-05 41.3 7.3 104 40-150 15-138 (250)
34 PRK05799 coproporphyrinogen II 92.7 0.41 9E-06 42.8 7.1 89 53-145 51-150 (374)
35 TIGR02495 NrdG2 anaerobic ribo 92.5 2.1 4.5E-05 34.3 10.2 98 39-147 48-157 (191)
36 COG2896 MoaA Molybdenum cofact 92.4 0.57 1.2E-05 42.5 7.6 98 39-145 44-152 (322)
37 PRK08207 coproporphyrinogen II 92.4 0.51 1.1E-05 44.7 7.5 92 52-145 217-320 (488)
38 cd07941 DRE_TIM_LeuA3 Desulfob 92.3 0.49 1.1E-05 41.1 6.8 91 51-142 89-192 (273)
39 PRK11858 aksA trans-homoaconit 92.0 0.49 1.1E-05 43.1 6.7 105 42-154 80-195 (378)
40 PF00215 OMPdecase: Orotidine 91.9 0.77 1.7E-05 38.4 7.4 97 39-143 11-111 (226)
41 PRK09856 fructoselysine 3-epim 91.8 0.45 9.6E-06 40.1 5.9 47 102-148 14-65 (275)
42 PRK00164 moaA molybdenum cofac 91.6 2.5 5.4E-05 37.1 10.5 52 39-92 50-107 (331)
43 COG3623 SgaU Putative L-xylulo 91.6 0.37 8.1E-06 42.7 5.2 57 91-148 9-72 (287)
44 cd03174 DRE_TIM_metallolyase D 91.5 0.17 3.6E-06 42.3 3.0 87 54-142 88-187 (265)
45 smart00729 Elp3 Elongator prot 91.5 3.2 7E-05 32.0 10.0 87 54-147 52-154 (216)
46 TIGR02660 nifV_homocitr homoci 91.4 0.53 1.1E-05 42.6 6.2 91 50-142 82-183 (365)
47 CHL00200 trpA tryptophan synth 91.3 0.88 1.9E-05 39.8 7.3 108 39-153 27-154 (263)
48 TIGR02109 PQQ_syn_pqqE coenzym 91.2 2.3 5E-05 37.6 10.0 96 39-146 38-148 (358)
49 cd04724 Tryptophan_synthase_al 91.2 2 4.4E-05 36.6 9.3 104 41-151 14-137 (242)
50 cd07940 DRE_TIM_IPMS 2-isoprop 91.2 0.84 1.8E-05 39.2 7.0 99 42-142 74-184 (268)
51 TIGR03470 HpnH hopanoid biosyn 91.0 2.2 4.7E-05 37.8 9.6 51 39-93 60-113 (318)
52 TIGR02666 moaA molybdenum cofa 91.0 3 6.5E-05 36.6 10.4 44 39-84 44-89 (334)
53 TIGR03128 RuMP_HxlA 3-hexulose 90.7 2.6 5.5E-05 34.3 9.1 97 39-150 10-109 (206)
54 PF04055 Radical_SAM: Radical 90.6 3.6 7.9E-05 30.4 9.2 95 39-145 29-142 (166)
55 PRK13361 molybdenum cofactor b 90.6 3.5 7.6E-05 36.5 10.5 43 39-83 46-89 (329)
56 PRK09989 hypothetical protein; 90.6 0.56 1.2E-05 39.5 5.3 42 102-147 16-57 (258)
57 PRK07094 biotin synthase; Prov 90.5 3.6 7.9E-05 35.9 10.5 84 54-148 87-183 (323)
58 PF00290 Trp_syntA: Tryptophan 90.3 1.3 2.9E-05 38.9 7.5 108 39-153 22-150 (259)
59 PF00682 HMGL-like: HMGL-like 90.1 0.4 8.7E-06 39.9 4.0 99 51-153 78-187 (237)
60 TIGR00262 trpA tryptophan synt 89.9 1.5 3.3E-05 38.0 7.5 103 40-150 23-147 (256)
61 TIGR03234 OH-pyruv-isom hydrox 89.9 0.69 1.5E-05 38.6 5.2 43 102-148 15-57 (254)
62 TIGR01212 radical SAM protein, 89.9 1.1 2.5E-05 39.4 6.8 88 57-148 81-181 (302)
63 PRK09058 coproporphyrinogen II 89.7 0.72 1.6E-05 42.9 5.7 89 53-145 114-214 (449)
64 PRK13813 orotidine 5'-phosphat 89.6 1.2 2.6E-05 36.7 6.4 37 39-75 14-50 (215)
65 smart00642 Aamy Alpha-amylase 89.5 1.1 2.4E-05 36.3 6.0 49 106-154 24-94 (166)
66 PRK05692 hydroxymethylglutaryl 89.5 1 2.3E-05 39.6 6.3 89 52-142 91-196 (287)
67 smart00481 POLIIIAc DNA polyme 89.4 1.3 2.8E-05 29.9 5.4 46 100-148 14-59 (67)
68 PRK01060 endonuclease IV; Prov 89.4 1 2.2E-05 38.1 5.9 44 102-145 13-62 (281)
69 PRK09997 hydroxypyruvate isome 89.3 0.58 1.3E-05 39.4 4.4 47 95-147 11-57 (258)
70 TIGR03699 mena_SCO4550 menaqui 89.2 3.1 6.7E-05 36.8 9.1 94 54-148 89-199 (340)
71 PRK05301 pyrroloquinoline quin 88.8 2.9 6.4E-05 37.4 8.7 96 39-146 47-157 (378)
72 COG1082 IolE Sugar phosphate i 88.5 1.5 3.2E-05 36.5 6.3 54 101-154 15-69 (274)
73 TIGR00736 nifR3_rel_arch TIM-b 88.3 6.1 0.00013 34.1 10.0 104 39-151 78-196 (231)
74 cd04726 KGPDC_HPS 3-Keto-L-gul 88.1 3.8 8.2E-05 33.0 8.2 96 39-149 11-109 (202)
75 PRK08446 coproporphyrinogen II 87.9 3.1 6.7E-05 37.3 8.3 116 27-145 54-180 (350)
76 TIGR01211 ELP3 histone acetylt 87.8 4.9 0.00011 38.7 10.0 103 47-149 127-261 (522)
77 TIGR02090 LEU1_arch isopropylm 87.5 2 4.4E-05 38.9 6.9 88 53-142 84-182 (363)
78 PF01212 Beta_elim_lyase: Beta 87.4 1.9 4.1E-05 38.0 6.5 78 39-122 107-193 (290)
79 cd03174 DRE_TIM_metallolyase D 87.4 5.2 0.00011 33.3 8.9 91 44-148 25-133 (265)
80 cd06543 GH18_PF-ChiA-like PF-C 87.3 2 4.3E-05 38.1 6.6 74 69-142 53-136 (294)
81 PRK05985 cytosine deaminase; P 87.2 6.8 0.00015 35.0 10.0 95 69-169 190-289 (391)
82 PRK13125 trpA tryptophan synth 87.1 16 0.00035 31.1 11.9 111 39-154 16-140 (244)
83 PRK12344 putative alpha-isopro 86.9 2 4.2E-05 41.1 6.8 119 20-142 69-199 (524)
84 cd02874 GH18_CFLE_spore_hydrol 86.8 2.7 5.9E-05 36.5 7.1 89 46-138 18-125 (313)
85 COG1105 FruK Fructose-1-phosph 86.7 7.4 0.00016 35.3 9.9 77 26-102 101-181 (310)
86 cd07948 DRE_TIM_HCS Saccharomy 86.3 1.7 3.7E-05 37.8 5.6 106 41-154 75-191 (262)
87 TIGR00423 radical SAM domain p 86.2 8 0.00017 33.9 9.7 99 54-155 53-168 (309)
88 PRK13347 coproporphyrinogen II 86.1 4.7 0.0001 37.4 8.7 120 27-146 106-235 (453)
89 PRK07379 coproporphyrinogen II 86.0 5.3 0.00011 36.5 8.8 119 27-145 69-197 (400)
90 PF01261 AP_endonuc_2: Xylose 85.8 0.51 1.1E-05 37.0 1.9 42 107-148 1-45 (213)
91 PF01301 Glyco_hydro_35: Glyco 85.8 2.1 4.5E-05 38.3 5.9 52 101-152 24-85 (319)
92 PLN02746 hydroxymethylglutaryl 85.4 1.9 4.1E-05 39.4 5.6 107 41-154 125-248 (347)
93 cd07945 DRE_TIM_CMS Leptospira 85.4 1.9 4.2E-05 37.8 5.5 97 42-142 79-188 (280)
94 cd07938 DRE_TIM_HMGL 3-hydroxy 85.2 2.7 5.9E-05 36.7 6.3 97 41-142 77-190 (274)
95 PRK05660 HemN family oxidoredu 85.2 5.9 0.00013 35.9 8.7 119 27-145 61-189 (378)
96 cd01335 Radical_SAM Radical SA 85.0 11 0.00024 28.4 9.0 95 43-149 34-144 (204)
97 PF04476 DUF556: Protein of un 85.0 5.9 0.00013 34.7 8.2 97 42-146 69-183 (235)
98 TIGR01740 pyrF orotidine 5'-ph 84.7 8.8 0.00019 31.9 8.9 93 39-143 9-102 (213)
99 PRK09061 D-glutamate deacylase 84.6 7.2 0.00016 36.9 9.2 106 43-154 171-286 (509)
100 PRK15452 putative protease; Pr 84.6 9.3 0.0002 36.0 9.9 78 39-122 12-97 (443)
101 PRK08445 hypothetical protein; 84.5 13 0.00029 33.5 10.6 98 51-148 87-200 (348)
102 PLN02951 Molybderin biosynthes 84.5 11 0.00024 34.4 10.1 44 39-84 91-136 (373)
103 PRK00125 pyrF orotidine 5'-pho 84.4 5.5 0.00012 35.3 7.9 100 39-146 38-146 (278)
104 PF01261 AP_endonuc_2: Xylose 84.4 0.75 1.6E-05 36.0 2.2 101 54-154 9-136 (213)
105 PF10566 Glyco_hydro_97: Glyco 84.3 2.5 5.5E-05 37.5 5.7 46 101-146 32-89 (273)
106 PRK01122 potassium-transportin 84.0 4 8.6E-05 40.5 7.5 62 69-146 447-510 (679)
107 cd02875 GH18_chitobiase Chitob 84.0 2.9 6.4E-05 37.7 6.1 50 72-123 66-121 (358)
108 PRK14010 potassium-transportin 83.9 4.2 9.1E-05 40.3 7.6 64 67-146 441-506 (673)
109 PRK08323 phenylhydantoinase; V 83.8 22 0.00047 32.3 11.7 97 52-153 140-262 (459)
110 TIGR00539 hemN_rel putative ox 83.6 6.4 0.00014 35.2 8.1 118 27-145 54-182 (360)
111 cd07937 DRE_TIM_PC_TC_5S Pyruv 83.4 4.3 9.4E-05 35.3 6.8 101 43-148 26-136 (275)
112 PRK05926 hypothetical protein; 83.1 17 0.00036 33.4 10.7 97 61-159 122-234 (370)
113 PRK07572 cytosine deaminase; V 82.6 10 0.00022 34.5 9.2 34 24-58 110-147 (426)
114 PRK09249 coproporphyrinogen II 82.4 7.6 0.00016 36.0 8.3 119 27-145 105-233 (453)
115 cd04722 TIM_phosphate_binding 82.3 8.6 0.00019 29.4 7.4 107 42-153 13-124 (200)
116 cd00019 AP2Ec AP endonuclease 82.2 2.3 5.1E-05 36.0 4.6 12 72-83 12-23 (279)
117 cd06545 GH18_3CO4_chitinase Th 82.2 4.6 9.9E-05 34.2 6.3 72 70-142 46-127 (253)
118 cd01314 D-HYD D-hydantoinases 81.9 23 0.0005 32.1 11.1 95 54-153 144-264 (447)
119 cd04725 OMP_decarboxylase_like 81.7 8 0.00017 32.4 7.5 101 39-151 9-112 (216)
120 cd06542 GH18_EndoS-like Endo-b 81.6 8.2 0.00018 32.5 7.6 94 48-142 22-140 (255)
121 PRK05904 coproporphyrinogen II 81.4 11 0.00023 34.1 8.7 116 27-145 59-185 (353)
122 cd00946 FBP_aldolase_IIA Class 81.2 8.3 0.00018 35.4 8.0 78 73-156 77-167 (345)
123 TIGR01769 GGGP geranylgeranylg 81.2 6.2 0.00013 33.5 6.7 69 103-179 13-82 (205)
124 cd01011 nicotinamidase Nicotin 81.0 6.2 0.00013 32.3 6.5 66 74-146 128-195 (196)
125 PRK04302 triosephosphate isome 81.0 4.6 9.9E-05 33.8 5.8 49 104-152 75-123 (223)
126 cd01315 L-HYD_ALN L-Hydantoina 80.7 36 0.00077 30.9 11.9 125 23-152 81-263 (447)
127 cd01293 Bact_CD Bacterial cyto 80.6 10 0.00022 33.1 8.0 10 24-33 108-117 (398)
128 PRK13209 L-xylulose 5-phosphat 80.5 10 0.00023 32.0 8.0 107 42-151 25-159 (283)
129 PRK05628 coproporphyrinogen II 80.2 7.5 0.00016 34.9 7.3 120 27-146 62-191 (375)
130 PRK15447 putative protease; Pr 80.1 9.7 0.00021 33.6 7.8 90 41-146 15-110 (301)
131 TIGR00542 hxl6Piso_put hexulos 79.9 30 0.00065 29.3 10.6 82 69-150 51-153 (279)
132 PF03644 Glyco_hydro_85: Glyco 79.9 4.9 0.00011 36.0 6.0 87 52-142 27-130 (311)
133 PF00128 Alpha-amylase: Alpha 79.9 3.1 6.6E-05 34.3 4.4 54 103-156 6-78 (316)
134 PRK13306 ulaD 3-keto-L-gulonat 79.7 5.1 0.00011 33.8 5.7 40 39-78 14-53 (216)
135 TIGR01037 pyrD_sub1_fam dihydr 79.6 17 0.00037 31.5 9.1 77 41-125 106-193 (300)
136 cd00598 GH18_chitinase-like Th 79.0 16 0.00034 29.2 8.2 120 2-142 2-136 (210)
137 cd06564 GH20_DspB_LnbB-like Gl 79.0 5.4 0.00012 35.4 5.9 28 126-153 78-105 (326)
138 TIGR00538 hemN oxygen-independ 78.6 15 0.00032 34.1 8.9 108 39-146 117-234 (455)
139 cd02911 arch_FMN Archeal FMN-b 78.6 21 0.00046 30.4 9.3 91 40-140 84-189 (233)
140 TIGR02631 xylA_Arthro xylose i 78.4 5.4 0.00012 36.6 5.9 46 102-147 33-85 (382)
141 PRK12331 oxaloacetate decarbox 78.3 8.7 0.00019 36.2 7.3 95 42-142 97-195 (448)
142 TIGR03470 HpnH hopanoid biosyn 78.2 5.3 0.00011 35.4 5.6 51 71-124 150-201 (318)
143 TIGR02617 tnaA_trp_ase tryptop 78.2 9.5 0.00021 36.5 7.6 100 39-142 168-293 (467)
144 PRK08898 coproporphyrinogen II 78.0 11 0.00023 34.4 7.7 92 52-146 72-174 (394)
145 PRK08208 coproporphyrinogen II 77.9 17 0.00036 33.6 9.0 116 27-145 94-223 (430)
146 PRK12313 glycogen branching en 77.8 5.8 0.00013 38.4 6.2 52 103-154 173-244 (633)
147 PRK06015 keto-hydroxyglutarate 77.8 3.1 6.8E-05 35.2 3.9 41 69-122 83-125 (201)
148 PTZ00331 alpha/beta hydrolase; 77.6 7.5 0.00016 32.5 6.1 65 77-148 139-205 (212)
149 smart00518 AP2Ec AP endonuclea 77.5 27 0.00057 29.3 9.5 107 43-149 12-139 (273)
150 cd02801 DUS_like_FMN Dihydrour 77.5 15 0.00034 30.0 7.9 97 40-142 66-181 (231)
151 TIGR01182 eda Entner-Doudoroff 77.4 5.8 0.00013 33.7 5.4 40 70-122 88-129 (204)
152 PRK09282 pyruvate carboxylase 77.0 15 0.00032 35.9 8.7 96 41-142 96-195 (592)
153 PHA02754 hypothetical protein; 76.8 1.8 4E-05 30.6 1.8 20 40-59 20-39 (67)
154 PRK02227 hypothetical protein; 76.8 14 0.0003 32.4 7.7 105 41-146 68-183 (238)
155 TIGR01497 kdpB K+-transporting 76.8 9.4 0.0002 37.9 7.4 63 68-146 447-511 (675)
156 cd01948 EAL EAL domain. This d 76.7 7.2 0.00016 31.2 5.6 80 22-118 142-227 (240)
157 PRK05927 hypothetical protein; 76.6 34 0.00074 31.1 10.4 98 59-159 98-212 (350)
158 PRK13307 bifunctional formalde 76.6 11 0.00023 35.1 7.3 97 39-148 183-281 (391)
159 TIGR02127 pyrF_sub2 orotidine 76.4 18 0.00039 31.7 8.3 93 42-142 42-139 (261)
160 PRK00915 2-isopropylmalate syn 76.4 5.2 0.00011 38.1 5.3 87 54-142 93-190 (513)
161 cd00740 MeTr MeTr subgroup of 76.2 38 0.00083 29.3 10.3 93 42-137 31-144 (252)
162 PF05913 DUF871: Bacterial pro 76.1 4.5 9.7E-05 37.1 4.7 81 82-170 2-91 (357)
163 cd06565 GH20_GcnA-like Glycosy 75.9 7 0.00015 34.5 5.7 67 66-152 13-82 (301)
164 COG4130 Predicted sugar epimer 75.8 4.3 9.2E-05 35.9 4.2 48 101-148 17-67 (272)
165 TIGR01515 branching_enzym alph 75.6 7.5 0.00016 37.7 6.3 51 104-154 160-230 (613)
166 PRK08207 coproporphyrinogen II 75.4 20 0.00044 34.0 9.0 119 27-145 221-351 (488)
167 PF13380 CoA_binding_2: CoA bi 75.2 5.3 0.00011 30.4 4.2 41 101-147 66-106 (116)
168 PRK10785 maltodextrin glucosid 75.2 7.1 0.00015 37.8 6.0 54 103-156 181-252 (598)
169 PRK09441 cytoplasmic alpha-amy 75.0 7.6 0.00016 36.2 6.0 52 103-154 24-105 (479)
170 TIGR03234 OH-pyruv-isom hydrox 74.9 20 0.00043 29.9 7.9 77 72-150 41-143 (254)
171 PRK09997 hydroxypyruvate isome 74.9 30 0.00065 29.0 9.1 76 72-150 42-144 (258)
172 PLN03228 methylthioalkylmalate 74.7 8.1 0.00018 37.1 6.2 87 54-142 182-280 (503)
173 PRK13210 putative L-xylulose 5 74.7 19 0.00041 30.2 7.8 82 69-150 51-153 (284)
174 PRK07360 FO synthase subunit 2 74.5 44 0.00096 30.3 10.6 100 54-156 108-225 (371)
175 PRK14024 phosphoribosyl isomer 74.3 9.7 0.00021 32.3 6.0 112 25-153 75-200 (241)
176 TIGR01496 DHPS dihydropteroate 74.3 21 0.00045 31.0 8.1 74 72-145 63-163 (257)
177 PF03740 PdxJ: Pyridoxal phosp 74.3 4.6 0.0001 35.4 4.1 72 67-148 108-190 (239)
178 PRK12677 xylose isomerase; Pro 74.2 6.6 0.00014 36.1 5.3 46 102-147 32-84 (384)
179 PRK06294 coproporphyrinogen II 74.1 23 0.00049 32.1 8.6 113 28-144 62-184 (370)
180 smart00518 AP2Ec AP endonuclea 73.9 10 0.00022 31.9 6.0 45 102-146 11-61 (273)
181 TIGR01210 conserved hypothetic 73.5 14 0.00031 32.7 7.1 74 66-149 84-174 (313)
182 PLN02447 1,4-alpha-glucan-bran 73.3 8.5 0.00018 38.8 6.2 52 104-155 254-325 (758)
183 PRK06846 putative deaminase; V 73.1 26 0.00057 31.7 8.8 93 70-169 206-304 (410)
184 COG1038 PycA Pyruvate carboxyl 73.1 4.4 9.5E-05 41.7 4.1 69 72-149 69-139 (1149)
185 TIGR02104 pulA_typeI pullulana 72.8 8 0.00017 37.4 5.7 54 102-155 165-254 (605)
186 cd00854 NagA N-acetylglucosami 72.7 6 0.00013 35.5 4.6 62 21-91 118-194 (374)
187 TIGR01108 oadA oxaloacetate de 72.7 22 0.00048 34.7 8.7 96 43-142 93-190 (582)
188 PF02811 PHP: PHP domain; Int 72.7 7.1 0.00015 29.9 4.4 48 98-148 13-60 (175)
189 COG2008 GLY1 Threonine aldolas 72.5 4.5 9.8E-05 37.2 3.8 87 25-121 99-197 (342)
190 TIGR01647 ATPase-IIIA_H plasma 72.5 8.2 0.00018 38.3 5.8 69 67-146 442-537 (755)
191 cd06570 GH20_chitobiase-like_1 72.3 11 0.00023 33.8 6.0 28 126-153 64-91 (311)
192 PRK00230 orotidine 5'-phosphat 72.2 14 0.0003 31.4 6.4 74 39-121 13-87 (230)
193 PRK15122 magnesium-transportin 72.2 9.2 0.0002 38.9 6.2 68 68-146 551-640 (903)
194 cd02072 Glm_B12_BD B12 binding 72.1 12 0.00026 29.7 5.6 96 39-147 15-112 (128)
195 PF01081 Aldolase: KDPG and KH 71.2 3.8 8.1E-05 34.6 2.7 38 70-120 88-127 (196)
196 PRK10517 magnesium-transportin 71.1 9.3 0.0002 38.9 6.0 68 68-146 551-640 (902)
197 TIGR03700 mena_SCO4494 putativ 71.1 58 0.0013 29.2 10.5 95 61-157 103-213 (351)
198 PRK07114 keto-hydroxyglutarate 70.8 5.9 0.00013 34.1 3.9 41 70-123 99-141 (222)
199 PRK09248 putative hydrolase; V 70.8 11 0.00025 31.6 5.6 16 103-118 203-218 (246)
200 PRK09505 malS alpha-amylase; R 70.6 10 0.00023 37.6 6.0 54 103-156 232-318 (683)
201 cd00429 RPE Ribulose-5-phospha 70.4 44 0.00096 26.6 8.8 97 39-151 10-113 (211)
202 TIGR00973 leuA_bact 2-isopropy 70.3 9.7 0.00021 36.2 5.6 87 54-142 90-187 (494)
203 PRK05402 glycogen branching en 70.3 10 0.00022 37.5 5.9 52 102-153 267-338 (726)
204 PRK10933 trehalose-6-phosphate 69.9 11 0.00024 36.1 6.0 52 103-154 35-105 (551)
205 PRK08599 coproporphyrinogen II 69.7 32 0.0007 30.8 8.6 104 39-145 66-182 (377)
206 PF00563 EAL: EAL domain; Int 69.6 4.7 0.0001 32.2 2.9 77 22-118 144-228 (236)
207 PRK13745 anaerobic sulfatase-m 69.6 25 0.00054 32.2 7.9 96 39-145 49-168 (412)
208 PRK07213 chlorohydrolase; Prov 69.5 40 0.00087 30.1 9.1 92 66-168 175-276 (375)
209 TIGR02403 trehalose_treC alpha 69.5 11 0.00024 36.0 5.8 54 103-156 29-101 (543)
210 PF00857 Isochorismatase: Isoc 69.4 5.8 0.00012 30.9 3.3 80 56-148 90-171 (174)
211 PRK14042 pyruvate carboxylase 69.3 37 0.0008 33.4 9.4 115 23-142 75-195 (596)
212 cd02803 OYE_like_FMN_family Ol 69.3 5.4 0.00012 34.8 3.4 41 102-142 229-279 (327)
213 PF04405 ScdA_N: Domain of Unk 69.1 13 0.00029 25.3 4.6 39 74-113 14-55 (56)
214 smart00052 EAL Putative diguan 68.7 16 0.00035 29.2 5.9 77 22-118 143-228 (241)
215 cd02742 GH20_hexosaminidase Be 68.7 14 0.0003 32.5 5.8 77 66-153 12-95 (303)
216 TIGR01501 MthylAspMutase methy 68.6 15 0.00032 29.3 5.5 95 39-146 17-113 (134)
217 cd02810 DHOD_DHPD_FMN Dihydroo 68.6 51 0.0011 28.2 9.2 79 41-125 111-200 (289)
218 PRK09856 fructoselysine 3-epim 68.5 69 0.0015 26.8 10.2 81 70-150 47-149 (275)
219 PRK14040 oxaloacetate decarbox 68.4 43 0.00092 32.8 9.6 109 24-142 77-196 (593)
220 TIGR00238 KamA family protein. 68.4 47 0.001 29.8 9.3 99 41-147 145-254 (331)
221 PRK14041 oxaloacetate decarbox 68.0 29 0.00063 33.0 8.2 87 50-142 105-194 (467)
222 PLN02951 Molybderin biosynthes 67.8 61 0.0013 29.5 10.0 118 24-146 105-231 (373)
223 cd01299 Met_dep_hydrolase_A Me 67.7 20 0.00043 31.0 6.6 100 66-177 116-224 (342)
224 COG1060 ThiH Thiamine biosynth 67.7 6.6 0.00014 36.2 3.8 121 17-152 46-180 (370)
225 PRK12568 glycogen branching en 67.6 13 0.00028 37.4 6.0 52 103-154 272-343 (730)
226 TIGR00510 lipA lipoate synthas 67.6 43 0.00093 30.0 8.8 117 39-180 125-254 (302)
227 PLN02389 biotin synthase 67.5 24 0.00051 32.5 7.3 70 70-148 153-231 (379)
228 COG1891 Uncharacterized protei 67.5 6.3 0.00014 33.9 3.3 75 57-141 154-232 (235)
229 TIGR00559 pdxJ pyridoxine 5'-p 67.4 23 0.0005 31.1 6.9 71 68-148 108-187 (237)
230 PRK09240 thiH thiamine biosynt 67.4 50 0.0011 30.0 9.3 97 39-146 105-219 (371)
231 TIGR03151 enACPred_II putative 67.4 29 0.00063 30.8 7.7 73 67-152 45-118 (307)
232 TIGR02026 BchE magnesium-proto 67.3 55 0.0012 30.8 9.9 89 54-148 240-341 (497)
233 PRK05718 keto-hydroxyglutarate 67.3 8.8 0.00019 32.6 4.2 68 39-123 53-137 (212)
234 cd06522 GH25_AtlA-like AtlA is 67.3 38 0.00083 27.6 7.9 90 48-144 22-123 (192)
235 TIGR03128 RuMP_HxlA 3-hexulose 67.1 29 0.00062 28.1 7.1 69 42-124 68-136 (206)
236 PLN00196 alpha-amylase; Provis 66.8 14 0.00031 34.5 5.8 52 103-154 46-116 (428)
237 TIGR00612 ispG_gcpE 1-hydroxy- 66.8 19 0.00042 33.2 6.5 88 43-132 83-182 (346)
238 COG0296 GlgB 1,4-alpha-glucan 66.7 14 0.00031 36.6 6.0 108 49-167 116-249 (628)
239 PRK05301 pyrroloquinoline quin 66.6 15 0.00033 32.8 5.8 70 66-145 45-116 (378)
240 PRK13758 anaerobic sulfatase-m 66.4 33 0.00072 30.3 7.9 28 56-83 60-87 (370)
241 TIGR03821 AblA_like_1 lysine-2 66.4 56 0.0012 29.2 9.3 97 43-147 161-268 (321)
242 cd00331 IGPS Indole-3-glycerol 66.3 20 0.00043 29.5 6.1 75 68-156 106-185 (217)
243 PRK05581 ribulose-phosphate 3- 66.2 62 0.0013 26.2 8.9 104 30-150 6-116 (220)
244 PRK09234 fbiC FO synthase; Rev 66.1 35 0.00076 34.8 8.8 93 61-156 581-690 (843)
245 TIGR01524 ATPase-IIIB_Mg magne 66.0 15 0.00033 37.1 6.2 68 68-146 516-605 (867)
246 TIGR02401 trehalose_TreY malto 66.0 14 0.00031 37.6 6.0 53 102-154 17-89 (825)
247 cd03321 mandelate_racemase Man 65.9 10 0.00022 33.9 4.5 62 24-95 236-300 (355)
248 TIGR03217 4OH_2_O_val_ald 4-hy 65.7 67 0.0015 29.0 9.8 51 102-156 115-166 (333)
249 PRK15108 biotin synthase; Prov 65.5 53 0.0011 29.6 9.1 68 70-148 111-189 (345)
250 PRK14706 glycogen branching en 65.2 14 0.0003 36.3 5.7 52 103-154 170-241 (639)
251 cd01297 D-aminoacylase D-amino 65.2 84 0.0018 28.5 10.4 93 54-152 181-283 (415)
252 cd06563 GH20_chitobiase-like T 65.2 15 0.00033 33.1 5.5 28 126-153 82-109 (357)
253 PRK02261 methylaspartate mutas 65.2 24 0.00051 27.8 6.0 96 39-147 19-116 (137)
254 cd00950 DHDPS Dihydrodipicolin 65.1 14 0.0003 31.7 5.1 77 68-145 19-97 (284)
255 PRK07259 dihydroorotate dehydr 65.1 58 0.0013 28.2 9.0 77 42-125 105-193 (301)
256 PF00150 Cellulase: Cellulase 65.1 13 0.00028 30.6 4.7 50 102-151 22-83 (281)
257 COG0284 PyrF Orotidine-5'-phos 65.0 12 0.00025 32.6 4.6 50 26-80 14-63 (240)
258 PRK03705 glycogen debranching 64.9 12 0.00026 36.9 5.2 49 106-154 184-266 (658)
259 cd06525 GH25_Lyc-like Lyc mura 64.8 11 0.00025 30.4 4.3 88 54-146 24-120 (184)
260 COG2102 Predicted ATPases of P 64.8 68 0.0015 28.0 9.2 97 41-151 76-181 (223)
261 TIGR02100 glgX_debranch glycog 64.8 13 0.00028 36.9 5.3 49 106-154 189-269 (688)
262 cd03413 CbiK_C Anaerobic cobal 64.5 39 0.00084 25.4 6.8 84 59-149 6-98 (103)
263 PRK10551 phage resistance prot 64.5 34 0.00075 32.4 8.0 98 43-154 370-477 (518)
264 cd07944 DRE_TIM_HOA_like 4-hyd 64.4 59 0.0013 28.2 8.9 90 42-146 24-125 (266)
265 TIGR03822 AblA_like_2 lysine-2 64.4 69 0.0015 28.5 9.5 43 102-145 215-260 (321)
266 cd01293 Bact_CD Bacterial cyto 64.1 21 0.00045 31.1 6.0 76 68-148 187-268 (398)
267 KOG3349 Predicted glycosyltran 64.1 9 0.00019 32.0 3.5 60 83-146 5-65 (170)
268 TIGR00433 bioB biotin syntheta 63.8 32 0.0007 29.3 7.1 17 130-146 158-174 (296)
269 COG4724 Endo-beta-N-acetylgluc 63.7 24 0.00052 33.8 6.6 110 33-145 90-221 (553)
270 PRK14511 maltooligosyl trehalo 63.5 17 0.00037 37.3 6.1 55 102-156 21-95 (879)
271 TIGR01768 GGGP-family geranylg 63.5 24 0.00052 30.5 6.2 69 103-179 16-84 (223)
272 PLN02361 alpha-amylase 63.2 19 0.00041 33.5 5.9 53 102-154 30-100 (401)
273 cd04885 ACT_ThrD-I Tandem C-te 63.1 16 0.00035 24.7 4.2 46 100-146 9-66 (68)
274 PF03447 NAD_binding_3: Homose 63.1 8 0.00017 28.6 2.9 48 101-149 70-117 (117)
275 PRK11059 regulatory protein Cs 63.0 21 0.00046 34.2 6.4 79 22-118 543-628 (640)
276 PRK05265 pyridoxine 5'-phospha 62.9 17 0.00038 31.9 5.3 71 68-148 111-189 (239)
277 PLN02960 alpha-amylase 62.5 20 0.00043 37.0 6.3 51 104-154 420-490 (897)
278 PRK07329 hypothetical protein; 62.2 23 0.0005 30.1 5.9 76 69-147 164-243 (246)
279 TIGR02456 treS_nterm trehalose 61.7 22 0.00048 33.8 6.2 51 103-153 30-99 (539)
280 cd02871 GH18_chitinase_D-like 61.6 23 0.00049 31.2 5.9 56 69-124 59-120 (312)
281 PLN02321 2-isopropylmalate syn 61.5 18 0.00038 35.8 5.6 85 56-142 185-281 (632)
282 PRK09058 coproporphyrinogen II 61.3 31 0.00068 32.1 7.0 116 27-145 117-245 (449)
283 cd00003 PNPsynthase Pyridoxine 61.3 19 0.00042 31.5 5.2 72 67-148 107-187 (234)
284 TIGR00290 MJ0570_dom MJ0570-re 61.1 1.1E+02 0.0023 26.4 10.0 86 54-151 86-180 (223)
285 PRK09389 (R)-citramalate synth 61.1 27 0.00059 33.2 6.6 96 42-142 78-184 (488)
286 TIGR02402 trehalose_TreZ malto 61.0 20 0.00044 34.3 5.8 48 107-154 117-184 (542)
287 cd01012 YcaC_related YcaC rela 60.8 37 0.00081 26.5 6.5 92 43-148 53-147 (157)
288 PRK02083 imidazole glycerol ph 60.8 90 0.002 26.4 9.2 115 25-154 74-208 (253)
289 cd02932 OYE_YqiM_FMN Old yello 60.6 11 0.00024 33.4 3.8 40 103-142 243-288 (336)
290 PRK14705 glycogen branching en 60.5 21 0.00044 38.0 6.1 50 103-152 768-837 (1224)
291 TIGR02666 moaA molybdenum cofa 60.4 53 0.0011 28.8 8.0 100 42-146 75-185 (334)
292 PLN03059 beta-galactosidase; P 59.9 17 0.00036 37.3 5.2 52 100-151 58-119 (840)
293 PF01136 Peptidase_U32: Peptid 59.8 20 0.00043 29.7 4.9 35 102-146 3-39 (233)
294 PF14871 GHL6: Hypothetical gl 59.7 29 0.00062 27.4 5.6 49 103-151 2-65 (132)
295 PRK08417 dihydroorotase; Provi 59.7 1.3E+02 0.0029 27.0 12.5 31 126-156 202-232 (386)
296 COG1921 SelA Selenocysteine sy 59.6 15 0.00033 34.5 4.5 64 72-146 176-250 (395)
297 PRK06852 aldolase; Validated 59.3 53 0.0012 29.7 7.9 82 56-143 96-201 (304)
298 cd06415 GH25_Cpl1-like Cpl-1 l 59.1 48 0.001 27.1 7.0 91 47-146 17-124 (196)
299 PRK06552 keto-hydroxyglutarate 59.0 14 0.0003 31.4 3.9 38 70-120 96-135 (213)
300 TIGR00977 LeuA_rel 2-isopropyl 59.0 20 0.00044 34.4 5.4 79 73-154 125-205 (526)
301 TIGR00742 yjbN tRNA dihydrouri 58.9 42 0.00092 30.1 7.2 82 57-142 96-192 (318)
302 PRK06886 hypothetical protein; 58.8 92 0.002 28.1 9.3 31 25-56 82-117 (329)
303 PRK12330 oxaloacetate decarbox 58.8 41 0.0009 32.4 7.5 110 24-142 77-196 (499)
304 COG0821 gcpE 1-hydroxy-2-methy 58.7 37 0.00081 31.6 6.8 72 54-127 96-179 (361)
305 PRK15108 biotin synthase; Prov 58.7 15 0.00033 33.1 4.4 73 65-145 74-148 (345)
306 TIGR03822 AblA_like_2 lysine-2 58.5 92 0.002 27.7 9.2 103 41-149 122-233 (321)
307 PRK13404 dihydropyrimidinase; 58.5 99 0.0022 28.9 9.8 82 67-153 163-268 (477)
308 PF00728 Glyco_hydro_20: Glyco 58.5 7.9 0.00017 33.8 2.4 28 126-153 69-96 (351)
309 PRK09490 metH B12-dependent me 58.5 1.1E+02 0.0023 32.9 10.9 92 45-139 392-507 (1229)
310 PF14488 DUF4434: Domain of un 58.3 13 0.00027 30.4 3.4 60 88-147 2-82 (166)
311 cd07941 DRE_TIM_LeuA3 Desulfob 58.2 23 0.0005 30.6 5.3 40 102-144 21-60 (273)
312 PRK11858 aksA trans-homoaconit 57.7 20 0.00044 32.7 5.0 41 102-145 27-67 (378)
313 TIGR03581 EF_0839 conserved hy 57.7 78 0.0017 27.9 8.3 100 38-150 90-210 (236)
314 PRK07203 putative chlorohydrol 57.6 43 0.00094 30.5 7.2 105 57-170 190-306 (442)
315 PRK10415 tRNA-dihydrouridine s 57.5 36 0.00078 30.3 6.5 86 56-147 105-198 (321)
316 PF13344 Hydrolase_6: Haloacid 57.3 22 0.00049 26.2 4.4 13 104-116 45-57 (101)
317 COG0800 Eda 2-keto-3-deoxy-6-p 57.3 12 0.00027 32.2 3.4 44 65-122 89-134 (211)
318 PF00563 EAL: EAL domain; Int 57.1 12 0.00025 29.9 3.1 99 41-149 106-209 (236)
319 PF09587 PGA_cap: Bacterial ca 57.1 30 0.00065 29.2 5.7 44 103-146 64-108 (250)
320 PRK05799 coproporphyrinogen II 57.0 92 0.002 27.8 9.0 117 27-146 54-182 (374)
321 PRK08573 phosphomethylpyrimidi 57.0 25 0.00055 32.6 5.6 56 24-87 46-101 (448)
322 cd04740 DHOD_1B_like Dihydroor 56.7 16 0.00035 31.5 4.0 47 102-148 103-159 (296)
323 PF02449 Glyco_hydro_42: Beta- 56.7 25 0.00055 31.5 5.4 44 102-147 11-64 (374)
324 COG5014 Predicted Fe-S oxidore 56.7 21 0.00046 30.7 4.6 47 102-148 79-125 (228)
325 cd00947 TBP_aldolase_IIB Tagat 56.4 74 0.0016 28.2 8.2 73 77-157 63-137 (276)
326 PLN02428 lipoic acid synthase 56.3 34 0.00073 31.5 6.2 71 71-146 232-317 (349)
327 PF07894 DUF1669: Protein of u 56.2 8.1 0.00017 34.7 2.1 68 41-121 137-204 (284)
328 cd04730 NPD_like 2-Nitropropan 56.2 23 0.00051 29.1 4.8 41 102-149 68-108 (236)
329 TIGR01517 ATPase-IIB_Ca plasma 56.2 27 0.00059 35.6 6.1 68 68-146 580-671 (941)
330 cd01320 ADA Adenosine deaminas 56.1 1.3E+02 0.0029 25.9 10.5 118 39-170 139-267 (325)
331 PF05913 DUF871: Bacterial pro 55.9 15 0.00032 33.7 3.9 92 40-146 13-114 (357)
332 PRK08444 hypothetical protein; 55.9 1.6E+02 0.0035 26.8 10.7 100 59-160 102-217 (353)
333 TIGR03471 HpnJ hopanoid biosyn 55.9 1.5E+02 0.0032 27.5 10.4 88 54-150 246-343 (472)
334 cd04731 HisF The cyclase subun 55.8 53 0.0012 27.4 6.9 114 26-154 72-204 (243)
335 cd07939 DRE_TIM_NifV Streptomy 55.7 25 0.00054 30.0 5.0 39 102-143 21-59 (259)
336 TIGR00284 dihydropteroate synt 55.6 1.4E+02 0.0031 28.7 10.5 118 21-144 150-280 (499)
337 PRK13523 NADPH dehydrogenase N 55.4 95 0.0021 28.0 8.9 21 103-123 141-164 (337)
338 KOG4175 Tryptophan synthase al 55.1 58 0.0012 28.7 7.1 72 72-150 82-155 (268)
339 PRK09195 gatY tagatose-bisphos 55.0 73 0.0016 28.4 7.9 50 105-156 88-141 (284)
340 COG0635 HemN Coproporphyrinoge 54.9 26 0.00057 32.5 5.4 95 48-146 80-189 (416)
341 TIGR02493 PFLA pyruvate format 54.9 17 0.00038 29.9 3.8 48 39-87 47-98 (235)
342 PRK14507 putative bifunctional 54.6 27 0.00059 38.4 6.0 51 102-152 759-829 (1693)
343 COG1646 Predicted phosphate-bi 54.6 39 0.00085 29.8 6.0 70 102-179 29-99 (240)
344 TIGR01858 tag_bisphos_ald clas 54.6 74 0.0016 28.3 7.9 52 105-156 86-139 (282)
345 PRK06151 N-ethylammeline chlor 54.5 86 0.0019 29.2 8.7 113 55-169 204-330 (488)
346 PRK05481 lipoyl synthase; Prov 54.4 43 0.00094 29.4 6.4 19 127-145 208-226 (289)
347 PRK00278 trpC indole-3-glycero 54.3 29 0.00063 30.0 5.2 45 107-153 126-170 (260)
348 COG0535 Predicted Fe-S oxidore 54.3 1.3E+02 0.0029 25.4 9.3 101 43-153 56-170 (347)
349 COG1874 LacA Beta-galactosidas 54.3 23 0.0005 35.4 5.1 63 85-151 16-89 (673)
350 PRK12581 oxaloacetate decarbox 54.3 80 0.0017 30.3 8.5 111 24-142 85-204 (468)
351 PRK01130 N-acetylmannosamine-6 54.2 31 0.00067 28.5 5.2 48 104-151 78-127 (221)
352 COG2200 Rtn c-di-GMP phosphodi 53.9 53 0.0011 28.1 6.7 92 45-149 110-212 (256)
353 cd04729 NanE N-acetylmannosami 53.4 1.2E+02 0.0027 24.9 8.7 46 105-150 83-130 (219)
354 cd01299 Met_dep_hydrolase_A Me 53.3 1.5E+02 0.0032 25.5 10.1 80 49-148 129-220 (342)
355 PRK07998 gatY putative fructos 53.2 70 0.0015 28.6 7.5 108 42-157 5-142 (283)
356 PRK14510 putative bifunctional 52.9 26 0.00057 37.1 5.5 51 105-155 191-272 (1221)
357 cd01297 D-aminoacylase D-amino 52.6 83 0.0018 28.5 8.1 44 103-146 169-215 (415)
358 TIGR00510 lipA lipoate synthas 52.6 48 0.001 29.6 6.4 71 71-146 192-277 (302)
359 PRK13561 putative diguanylate 52.4 29 0.00063 33.0 5.3 48 107-155 565-615 (651)
360 PRK08898 coproporphyrinogen II 52.3 92 0.002 28.4 8.4 117 27-144 76-202 (394)
361 PRK06801 hypothetical protein; 52.3 82 0.0018 28.0 7.8 47 104-152 87-137 (286)
362 PF01373 Glyco_hydro_14: Glyco 52.2 29 0.00064 32.6 5.2 84 71-156 17-115 (402)
363 cd03319 L-Ala-DL-Glu_epimerase 52.2 17 0.00038 31.6 3.5 65 24-98 227-294 (316)
364 TIGR02090 LEU1_arch isopropylm 52.2 27 0.00058 31.7 4.8 41 102-145 23-63 (363)
365 PF01983 CofC: Guanylyl transf 52.1 13 0.00027 32.0 2.6 107 23-137 62-181 (217)
366 PRK06038 N-ethylammeline chlor 52.1 45 0.00097 30.4 6.3 34 55-88 173-208 (430)
367 cd07940 DRE_TIM_IPMS 2-isoprop 52.1 25 0.00055 30.1 4.5 38 102-142 21-58 (268)
368 TIGR00735 hisF imidazoleglycer 52.0 70 0.0015 27.2 7.1 116 26-154 75-210 (254)
369 TIGR02351 thiH thiazole biosyn 52.0 75 0.0016 28.7 7.7 98 39-147 104-219 (366)
370 TIGR02826 RNR_activ_nrdG3 anae 52.0 42 0.00092 26.7 5.5 51 67-124 46-98 (147)
371 TIGR02826 RNR_activ_nrdG3 anae 51.9 32 0.0007 27.4 4.8 49 39-90 47-97 (147)
372 PRK08508 biotin synthase; Prov 51.9 1.3E+02 0.0028 26.1 8.9 68 73-144 102-180 (279)
373 PRK13561 putative diguanylate 51.8 41 0.00089 32.0 6.2 93 22-132 544-643 (651)
374 COG0439 AccC Biotin carboxylas 51.6 35 0.00075 32.4 5.6 99 31-142 79-187 (449)
375 smart00052 EAL Putative diguan 51.5 96 0.0021 24.7 7.6 103 42-154 104-213 (241)
376 PRK11145 pflA pyruvate formate 51.5 53 0.0011 27.4 6.2 100 39-149 52-167 (246)
377 PRK00366 ispG 4-hydroxy-3-meth 51.4 30 0.00065 32.2 5.1 84 47-132 95-191 (360)
378 COG0502 BioB Biotin synthase a 51.4 41 0.00089 30.9 5.9 45 104-148 144-197 (335)
379 TIGR02109 PQQ_syn_pqqE coenzym 51.2 42 0.00092 29.6 5.9 70 66-145 36-107 (358)
380 PRK09248 putative hydrolase; V 51.2 41 0.00088 28.3 5.5 44 102-146 141-188 (246)
381 cd00408 DHDPS-like Dihydrodipi 51.1 38 0.00082 28.8 5.4 76 69-145 17-94 (281)
382 PRK15447 putative protease; Pr 50.9 48 0.001 29.3 6.1 45 102-146 16-64 (301)
383 cd03316 MR_like Mandelate race 50.9 21 0.00046 31.4 3.9 58 24-93 239-301 (357)
384 cd01015 CSHase N-carbamoylsarc 50.9 52 0.0011 26.2 5.9 80 50-143 87-168 (179)
385 PRK12928 lipoyl synthase; Prov 50.9 58 0.0012 28.8 6.6 105 39-148 121-237 (290)
386 TIGR02660 nifV_homocitr homoci 50.8 29 0.00063 31.4 4.8 40 102-144 24-63 (365)
387 COG0621 MiaB 2-methylthioadeni 50.7 70 0.0015 30.4 7.5 100 41-145 212-327 (437)
388 cd04740 DHOD_1B_like Dihydroor 50.7 1.5E+02 0.0033 25.4 9.1 77 42-125 103-190 (296)
389 PRK12737 gatY tagatose-bisphos 50.6 46 0.001 29.6 6.0 50 105-156 88-141 (284)
390 PRK11145 pflA pyruvate formate 50.5 49 0.0011 27.6 5.9 13 103-115 150-162 (246)
391 cd07947 DRE_TIM_Re_CS Clostrid 50.4 51 0.0011 29.0 6.2 97 41-142 78-198 (279)
392 PRK03170 dihydrodipicolinate s 50.4 38 0.00082 29.2 5.3 76 69-145 21-98 (292)
393 TIGR02967 guan_deamin guanine 50.3 88 0.0019 27.9 7.8 107 55-169 169-289 (401)
394 PRK07369 dihydroorotase; Provi 50.2 2.1E+02 0.0045 26.4 12.1 31 126-156 234-264 (418)
395 PF03102 NeuB: NeuB family; I 50.2 44 0.00095 29.0 5.6 65 66-146 52-116 (241)
396 COG3589 Uncharacterized conser 50.2 36 0.00077 31.7 5.3 17 102-118 50-66 (360)
397 COG0119 LeuA Isopropylmalate/h 50.0 60 0.0013 30.4 6.9 99 42-142 81-187 (409)
398 PRK09057 coproporphyrinogen II 49.8 1.1E+02 0.0023 27.7 8.4 115 27-144 58-184 (380)
399 TIGR02137 HSK-PSP phosphoserin 49.5 75 0.0016 26.3 6.8 42 103-144 93-145 (203)
400 PRK12857 fructose-1,6-bisphosp 49.2 1.1E+02 0.0024 27.2 8.2 50 105-156 88-141 (284)
401 cd02801 DUS_like_FMN Dihydrour 49.1 35 0.00076 27.9 4.7 41 102-142 68-121 (231)
402 PRK07374 dnaE DNA polymerase I 49.0 31 0.00067 36.5 5.3 49 96-148 14-63 (1170)
403 cd06568 GH20_SpHex_like A subg 49.0 17 0.00036 32.7 3.0 28 126-153 71-98 (329)
404 PRK13523 NADPH dehydrogenase N 48.8 18 0.0004 32.5 3.2 68 70-142 193-273 (337)
405 PLN02803 beta-amylase 48.7 40 0.00087 33.0 5.6 68 81-148 83-162 (548)
406 PRK08392 hypothetical protein; 48.6 64 0.0014 26.7 6.2 56 101-156 14-75 (215)
407 PRK09389 (R)-citramalate synth 48.6 31 0.00068 32.8 4.9 41 102-145 25-65 (488)
408 cd01303 GDEase Guanine deamina 48.6 1.8E+02 0.0039 26.5 9.7 121 43-168 179-310 (429)
409 PLN00197 beta-amylase; Provisi 48.5 41 0.00088 33.1 5.6 69 81-149 103-183 (573)
410 PRK10992 iron-sulfur cluster r 48.4 54 0.0012 27.9 5.8 59 75-136 18-79 (220)
411 PRK07328 histidinol-phosphatas 48.3 21 0.00046 30.5 3.4 75 70-147 177-255 (269)
412 COG0191 Fba Fructose/tagatose 48.2 84 0.0018 28.4 7.2 112 39-158 27-144 (286)
413 PLN02801 beta-amylase 48.1 41 0.00089 32.7 5.6 49 100-148 36-92 (517)
414 cd06414 GH25_LytC-like The Lyt 48.1 1.3E+02 0.0028 24.4 7.9 90 50-147 21-130 (191)
415 PRK05673 dnaE DNA polymerase I 48.1 33 0.00071 36.2 5.3 50 95-148 12-62 (1135)
416 cd04738 DHOD_2_like Dihydrooro 48.1 2E+02 0.0043 25.6 9.6 80 40-127 147-242 (327)
417 PRK09234 fbiC FO synthase; Rev 48.0 63 0.0014 33.1 7.1 113 24-143 572-708 (843)
418 COG3981 Predicted acetyltransf 48.0 18 0.00039 30.4 2.8 41 82-129 103-145 (174)
419 cd01305 archeal_chlorohydrolas 48.0 1.3E+02 0.0028 25.2 8.1 82 72-168 127-213 (263)
420 TIGR01501 MthylAspMutase methy 47.9 38 0.00082 27.0 4.6 88 42-139 40-131 (134)
421 COG2216 KdpB High-affinity K+ 47.8 26 0.00057 34.6 4.2 57 72-146 452-512 (681)
422 cd06416 GH25_Lys1-like Lys-1 i 47.8 49 0.0011 26.9 5.4 94 49-146 20-126 (196)
423 cd04886 ACT_ThrD-II-like C-ter 47.8 71 0.0015 20.3 5.9 46 102-147 11-72 (73)
424 PRK10060 RNase II stability mo 47.5 50 0.0011 31.9 6.2 44 110-154 572-621 (663)
425 PRK04165 acetyl-CoA decarbonyl 47.2 2.6E+02 0.0057 26.7 10.7 83 54-144 128-226 (450)
426 PRK12394 putative metallo-depe 47.0 38 0.00082 30.3 4.9 47 41-87 142-190 (379)
427 PRK10076 pyruvate formate lyas 46.9 61 0.0013 27.4 5.9 61 72-139 21-90 (213)
428 PLN02784 alpha-amylase 46.8 49 0.0011 34.2 6.1 55 102-156 522-594 (894)
429 cd06562 GH20_HexA_HexB-like Be 46.7 18 0.00039 32.5 2.9 29 125-153 65-93 (348)
430 cd03318 MLE Muconate Lactonizi 46.6 29 0.00064 30.9 4.2 63 24-96 238-303 (365)
431 smart00636 Glyco_18 Glycosyl h 46.4 76 0.0017 27.5 6.6 50 72-122 54-115 (334)
432 cd04909 ACT_PDH-BS C-terminal 46.3 42 0.00092 22.1 4.0 17 130-146 53-69 (69)
433 KOG0622 Ornithine decarboxylas 46.3 98 0.0021 29.6 7.6 93 70-163 193-305 (448)
434 PRK11440 putative hydrolase; P 46.3 65 0.0014 25.9 5.8 78 51-142 95-174 (188)
435 PF04551 GcpE: GcpE protein; 46.2 51 0.0011 30.7 5.7 82 51-132 92-191 (359)
436 cd00331 IGPS Indole-3-glycerol 46.0 60 0.0013 26.6 5.7 58 83-151 72-129 (217)
437 COG1237 Metal-dependent hydrol 46.0 1.4E+02 0.003 26.6 8.2 70 41-125 181-256 (259)
438 PRK02261 methylaspartate mutas 45.9 54 0.0012 25.8 5.1 59 77-145 25-84 (137)
439 TIGR03552 F420_cofC 2-phospho- 45.4 1.2E+02 0.0025 24.1 7.1 113 23-138 63-186 (195)
440 PRK15446 phosphonate metabolis 45.2 52 0.0011 29.8 5.6 19 68-86 212-230 (383)
441 PRK07259 dihydroorotate dehydr 45.1 36 0.00078 29.5 4.4 41 102-142 105-155 (301)
442 PRK09059 dihydroorotase; Valid 45.0 2.5E+02 0.0055 25.8 10.3 127 22-154 88-266 (429)
443 cd03324 rTSbeta_L-fuconate_deh 44.9 35 0.00076 31.6 4.5 84 39-129 305-406 (415)
444 cd06660 Aldo_ket_red Aldo-keto 44.8 1.8E+02 0.004 24.2 9.6 98 41-148 97-197 (285)
445 cd07948 DRE_TIM_HCS Saccharomy 44.7 1.2E+02 0.0026 26.3 7.6 91 42-146 26-128 (262)
446 TIGR01235 pyruv_carbox pyruvat 44.6 23 0.0005 37.3 3.6 40 103-142 691-730 (1143)
447 PRK08649 inosine 5-monophospha 44.6 90 0.0019 28.7 7.1 71 70-148 118-192 (368)
448 PLN02621 nicotinamidase 44.5 69 0.0015 26.1 5.7 82 51-146 101-184 (197)
449 cd04734 OYE_like_3_FMN Old yel 44.1 68 0.0015 28.8 6.1 56 70-126 192-254 (343)
450 PRK12581 oxaloacetate decarbox 44.0 50 0.0011 31.6 5.5 49 102-152 106-154 (468)
451 PLN02161 beta-amylase 43.8 51 0.0011 32.2 5.5 51 98-148 114-172 (531)
452 TIGR02668 moaA_archaeal probab 43.3 1.3E+02 0.0028 25.9 7.5 100 42-146 72-180 (302)
453 PF13378 MR_MLE_C: Enolase C-t 43.2 28 0.00061 25.4 3.0 71 39-120 6-78 (111)
454 PRK14085 imidazolonepropionase 43.2 1.2E+02 0.0025 27.1 7.5 41 47-88 185-225 (382)
455 cd06831 PLPDE_III_ODC_like_AZI 43.2 1.3E+02 0.0029 27.4 8.0 89 68-156 148-253 (394)
456 cd08574 GDPD_GDE_2_3_6 Glycero 43.0 1.5E+02 0.0033 25.1 7.9 100 41-148 114-228 (252)
457 PRK04169 geranylgeranylglycery 42.9 78 0.0017 27.4 6.0 69 103-179 21-89 (232)
458 COG0269 SgbH 3-hexulose-6-phos 42.7 1.2E+02 0.0027 26.3 7.2 90 42-148 72-169 (217)
459 PRK11609 nicotinamidase/pyrazi 42.5 79 0.0017 25.9 5.9 65 76-147 134-202 (212)
460 PF00701 DHDPS: Dihydrodipicol 42.5 63 0.0014 27.8 5.5 39 103-141 24-65 (289)
461 PF03060 NMO: Nitronate monoox 42.5 2.2E+02 0.0048 25.3 9.1 54 92-152 92-145 (330)
462 PRK10319 N-acetylmuramoyl-l-al 42.5 1.4E+02 0.0031 26.5 7.8 37 102-141 90-126 (287)
463 PRK13361 molybdenum cofactor b 42.4 1.8E+02 0.0039 25.6 8.5 102 41-146 76-186 (329)
464 TIGR03820 lys_2_3_AblA lysine- 42.3 1.6E+02 0.0036 27.7 8.5 90 54-146 156-248 (417)
465 PRK02412 aroD 3-dehydroquinate 42.3 42 0.00091 28.9 4.3 83 44-137 102-186 (253)
466 TIGR03699 mena_SCO4550 menaqui 42.3 49 0.0011 29.2 4.9 18 67-84 72-89 (340)
467 PRK09250 fructose-bisphosphate 42.3 1.1E+02 0.0024 28.3 7.2 85 56-143 129-230 (348)
468 cd00945 Aldolase_Class_I Class 42.2 1.6E+02 0.0035 22.7 8.0 76 70-148 35-118 (201)
469 cd06569 GH20_Sm-chitobiase-lik 42.2 24 0.00051 33.2 3.0 29 125-153 92-120 (445)
470 PRK12999 pyruvate carboxylase; 42.1 80 0.0017 33.4 7.0 101 39-142 625-732 (1146)
471 PF02638 DUF187: Glycosyl hydr 42.0 47 0.001 29.5 4.7 22 129-150 69-90 (311)
472 PLN02705 beta-amylase 42.0 54 0.0012 32.8 5.4 66 84-149 247-324 (681)
473 PRK14017 galactonate dehydrata 41.9 25 0.00053 31.8 2.9 57 25-93 228-289 (382)
474 cd01013 isochorismatase Isocho 41.8 67 0.0015 26.4 5.3 73 58-143 122-196 (203)
475 TIGR00594 polc DNA-directed DN 41.8 41 0.0009 35.0 4.9 47 98-148 14-61 (1022)
476 PRK06267 hypothetical protein; 41.7 85 0.0018 28.2 6.4 82 53-148 79-171 (350)
477 PF10566 Glyco_hydro_97: Glyco 41.7 1.1E+02 0.0023 27.3 6.8 78 66-148 69-155 (273)
478 PRK08393 N-ethylammeline chlor 41.7 1.3E+02 0.0029 27.2 7.7 72 67-146 186-264 (424)
479 COG0474 MgtA Cation transport 41.7 68 0.0015 32.9 6.3 82 57-146 536-641 (917)
480 cd01302 Cyclic_amidohydrolases 41.5 2.3E+02 0.005 25.0 9.0 121 25-154 37-181 (337)
481 cd01316 CAD_DHOase The eukaryo 41.5 82 0.0018 28.3 6.2 123 25-156 37-185 (344)
482 PRK09045 N-ethylammeline chlor 41.5 2.8E+02 0.006 25.3 9.8 35 54-88 184-220 (443)
483 TIGR01211 ELP3 histone acetylt 41.5 1.1E+02 0.0024 29.5 7.4 97 39-141 150-280 (522)
484 PRK05588 histidinol-phosphatas 41.4 91 0.002 26.3 6.2 74 70-146 166-243 (255)
485 cd02930 DCR_FMN 2,4-dienoyl-Co 41.2 91 0.002 27.9 6.5 16 71-86 78-93 (353)
486 PF01902 ATP_bind_4: ATP-bindi 41.2 1.2E+02 0.0026 25.9 6.8 47 104-150 124-179 (218)
487 PRK05678 succinyl-CoA syntheta 41.1 70 0.0015 28.5 5.7 44 101-147 76-120 (291)
488 cd06564 GH20_DspB_LnbB-like Gl 41.0 47 0.001 29.4 4.5 71 63-142 75-149 (326)
489 PRK13586 1-(5-phosphoribosyl)- 40.8 79 0.0017 27.0 5.8 88 39-136 84-185 (232)
490 COG1004 Ugd Predicted UDP-gluc 40.8 88 0.0019 29.7 6.4 85 58-147 255-347 (414)
491 TIGR00097 HMP-P_kinase phospho 40.8 59 0.0013 27.3 4.9 28 53-84 67-94 (254)
492 TIGR02082 metH 5-methyltetrahy 40.7 2.9E+02 0.0062 29.6 10.7 96 47-145 378-502 (1178)
493 COG4887 Uncharacterized metal- 40.7 64 0.0014 27.1 4.9 81 66-149 16-97 (191)
494 PF00704 Glyco_hydro_18: Glyco 40.5 1E+02 0.0022 26.4 6.4 49 79-127 69-128 (343)
495 TIGR02033 D-hydantoinase D-hyd 40.5 2.8E+02 0.006 25.0 10.8 93 54-151 145-263 (454)
496 PRK04302 triosephosphate isome 40.5 2.1E+02 0.0046 23.8 8.2 74 70-156 101-186 (223)
497 smart00854 PGA_cap Bacterial c 40.5 78 0.0017 26.5 5.6 43 104-146 63-106 (239)
498 cd07381 MPP_CapA CapA and rela 40.4 76 0.0016 26.4 5.5 44 103-146 66-110 (239)
499 PRK08185 hypothetical protein; 40.3 1.2E+02 0.0025 27.1 6.9 87 56-152 41-131 (283)
500 PLN02428 lipoic acid synthase 40.3 67 0.0014 29.6 5.5 20 127-146 259-278 (349)
No 1
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=100.00 E-value=3.6e-57 Score=388.65 Aligned_cols=142 Identities=37% Similarity=0.651 Sum_probs=121.4
Q ss_pred CCCCCCCCCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCc-cH
Q 030024 13 EYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DW 91 (184)
Q Consensus 13 ~~~~R~~KPR~~GlT~V~DkG~s~~~g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G-tl 91 (184)
++|.|++|||++|+|||+|||+ |+++++|+|++||+|||++|||||||+|||+++|++||++||+|||+|||| |+
T Consensus 1 ~~~~R~~KPR~~GlT~v~Dkgl----g~~~~~dlLe~ag~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl 76 (244)
T PF02679_consen 1 NLPERPEKPRSRGLTMVIDKGL----GLRYLEDLLESAGDYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTL 76 (244)
T ss_dssp -TTGGG-SS-SSS-EEEEESS------HHHHHHHHHHHGGG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHH
T ss_pred CCCCCCCCCCCCCcEEEecCCC----CHHHHHHHHHHhhhhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHH
Confidence 4789999999999999999997 899999999999999999999999999999999999999999999999997 89
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCCCCCC
Q 030024 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIP 160 (184)
Q Consensus 92 fE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG~K~~~~~~~ 160 (184)
||+|++|| ++++|+++||++||++|||||||++||+++|+++|++++++||+|+||||+|+++++..
T Consensus 77 ~E~a~~q~--~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~EvG~K~~~~~~~ 143 (244)
T PF02679_consen 77 FEVAYQQG--KFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLSEVGKKDPESDFS 143 (244)
T ss_dssp HHHHHHTT---HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEEEES-SSHHHHTT
T ss_pred HHHHHhcC--hHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEeecccCCCchhccc
Confidence 99999999 99999999999999999999999999999999999999999999999999999997665
No 2
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=100.00 E-value=6.3e-51 Score=348.73 Aligned_cols=128 Identities=22% Similarity=0.409 Sum_probs=124.1
Q ss_pred ceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCc-cHHHHHHHhCCchHH
Q 030024 26 VTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFK 104 (184)
Q Consensus 26 lT~V~DkG~s~~~g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G-tlfE~al~qg~~~~~ 104 (184)
+|||+|||| |+++++|+|++||+|||++||||||++|||+++|+|||++||+|||+|||| ||||+|+.|+ +++
T Consensus 1 lT~v~dkgl----~~~~~~d~Le~~g~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~GGtl~E~~~~q~--~~~ 74 (237)
T TIGR03849 1 ITMVLDKGL----PPKFVEDYLKVCGDYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPGGTLFEIAHSKG--KFD 74 (237)
T ss_pred CceEecCCC----CHHHHHHHHHHhhhheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCCccHHHHHHHhh--hHH
Confidence 699999999 888999999999999999999999999999999999999999999999997 6999999998 999
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCCCCC
Q 030024 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDI 159 (184)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG~K~~~~~~ 159 (184)
+|+++||+|||++|||||||++||+++|+++|++++++||+|+||+|+|+...+.
T Consensus 75 ~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~~~ 129 (237)
T TIGR03849 75 EYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEVGKKSPEKDS 129 (237)
T ss_pred HHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEeccccccCCcccc
Confidence 9999999999999999999999999999999999999999999999999986543
No 3
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=100.00 E-value=7.2e-50 Score=339.96 Aligned_cols=145 Identities=27% Similarity=0.459 Sum_probs=138.5
Q ss_pred cccCCC-CCCCCCCCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCcee
Q 030024 8 WKSFDE-YEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV 86 (184)
Q Consensus 8 ~~~f~~-~~~R~~KPR~~GlT~V~DkG~s~~~g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v 86 (184)
|++|.- .|.|++|||.+|+|+|+|||| |++.++|+|++||+|||++||||||+.|.+++++++||++||+|||+|
T Consensus 1 m~aF~f~~~~r~~kPr~~G~T~vldkg~----~p~f~~D~~~vagdyVDfvKfgwGT~~Li~kd~V~ekid~y~e~~i~v 76 (258)
T COG1809 1 MNAFEFLPPARPEKPRTFGMTVVLDKGL----GPRFVEDVLKVAGDYVDFVKFGWGTSSLIDKDQVKEKIDMYKENDIYV 76 (258)
T ss_pred CCcccccCCCCCCCCccCCeEEEEeCCC----ChHHHHHHHHhhhhheeeeeecccccccccHHHHHHHHHHHHHcCcee
Confidence 356664 467999999999999999999 888999999999999999999999999999999999999999999999
Q ss_pred cCc-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCCCC
Q 030024 87 STG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSD 158 (184)
Q Consensus 87 ~~G-tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG~K~~~~~ 158 (184)
||| |+||+++.|+ ++++|+++|+++||++|||||||+.|+.++||+||+++.++||+|+||+|+|.+.++
T Consensus 77 ~pGGtlfe~a~~~~--kvdeyl~e~~~lGfe~iEIS~G~i~m~~eek~~lIe~a~d~Gf~vlsEvGkk~~e~~ 147 (258)
T COG1809 77 FPGGTLFEIAYSQD--KVDEYLNEAKELGFEAIEISNGTIPMSTEEKCRLIERAVDEGFMVLSEVGKKDPESD 147 (258)
T ss_pred cCCceEEEeehhcc--cHHHHHHHHHHcCccEEEecCCeeecchHHHHHHHHHHHhcccEEehhhcccCcchh
Confidence 996 8999999999 999999999999999999999999999999999999999999999999999999864
No 4
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=96.23 E-value=0.013 Score=52.81 Aligned_cols=87 Identities=21% Similarity=0.470 Sum_probs=67.7
Q ss_pred ccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc----
Q 030024 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE---- 126 (184)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~-~~yl~~~k~lGF~~IEISdGti~---- 126 (184)
..|+-|-||+||-.+.|.+.|++.++..+++.. .|+.+.-+|+.+ ++.++.+++.||+.|.|.--|.+
T Consensus 57 ~~i~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~-------~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L 129 (370)
T PRK06294 57 HFIDTVFFGGGTPSLVPPALIQDILKTLEAPHA-------TEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLL 129 (370)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHhCCC-------CeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHH
Confidence 458899999999999999999999999987622 133333355565 78899999999999988766652
Q ss_pred ------CChhHHHHHHHHHHHCCCe
Q 030024 127 ------IPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 127 ------i~~~~r~~lI~~~~~~Gf~ 145 (184)
-+.++-.+.|+.+++.||.
T Consensus 130 ~~l~R~~~~~~~~~ai~~~~~~g~~ 154 (370)
T PRK06294 130 KLLGRTHSSSKAIDAVQECSEHGFS 154 (370)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 2445666788899999996
No 5
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=96.10 E-value=0.025 Score=50.58 Aligned_cols=88 Identities=19% Similarity=0.379 Sum_probs=68.0
Q ss_pred cccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc-----
Q 030024 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE----- 126 (184)
Q Consensus 53 yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~-~~~yl~~~k~lGF~~IEISdGti~----- 126 (184)
-|+.|-||+||-.+.+.+.+++.++..+++ +..+ .|+.+.-+|+. -++.++.+++.||+.|.|+--+.+
T Consensus 51 ~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~---~~~~--~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~ 125 (350)
T PRK08446 51 KIESVFIGGGTPSTVSAKFYEPIFEIISPY---LSKD--CEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLK 125 (350)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHh---cCCC--ceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 589999999999999999999999999987 2223 24444444444 378899999999999988766662
Q ss_pred -----CChhHHHHHHHHHHHCCCe
Q 030024 127 -----IPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 127 -----i~~~~r~~lI~~~~~~Gf~ 145 (184)
-+.++-.+.|+.+++.||.
T Consensus 126 ~lgR~~~~~~~~~ai~~lr~~g~~ 149 (350)
T PRK08446 126 FLGRIHSQKQIIKAIENAKKAGFE 149 (350)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCC
Confidence 3456667889999999986
No 6
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=95.83 E-value=0.012 Score=49.89 Aligned_cols=58 Identities=24% Similarity=0.401 Sum_probs=47.8
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHCCCeEcc
Q 030024 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 90 tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~Gf~v~~ 148 (184)
+.+|+++.++ -.+++.++.++++||+.||++-.. ..++.++..++-+.+++.|+++-.
T Consensus 11 ~~~~~~~~~~-~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 11 GIYEKALPAG-ECWLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNS 75 (283)
T ss_pred eeecccCCCC-CCHHHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeE
Confidence 7889999765 479999999999999999998543 244777888888899999999743
No 7
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=95.82 E-value=0.033 Score=49.99 Aligned_cols=91 Identities=20% Similarity=0.295 Sum_probs=68.6
Q ss_pred ccccEEEeeCccccccChhHHHHHHHHHHhC-CceecCccHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc----
Q 030024 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL---- 125 (184)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~v~~GtlfE~al~qg~~~~-~~yl~~~k~lGF~~IEISdGti---- 125 (184)
.-|+-+-||+||..+++.+.|++.++.++++ ++.. . .|..+.-+|+.+ ++.++.++++||+.|.|.--|.
T Consensus 58 ~~i~~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~--~--~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~ 133 (375)
T PRK05628 58 PPVSTVFVGGGTPSLLGAEGLARVLDAVRDTFGLAP--G--AEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHV 133 (375)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCC--C--CEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHH
Confidence 4589999999999999999999999999874 4322 1 133332334444 5789999999999999877665
Q ss_pred ------cCChhHHHHHHHHHHHCCCe-E
Q 030024 126 ------EIPEETLLRYVRLVKSAGLK-A 146 (184)
Q Consensus 126 ------~i~~~~r~~lI~~~~~~Gf~-v 146 (184)
..+.++-.+.++.+++.||. |
T Consensus 134 L~~l~R~~s~~~~~~a~~~l~~~g~~~v 161 (375)
T PRK05628 134 LAVLDRTHTPGRAVAAAREARAAGFEHV 161 (375)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCCcE
Confidence 24556677889999999997 5
No 8
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=95.45 E-value=0.051 Score=49.60 Aligned_cols=91 Identities=22% Similarity=0.400 Sum_probs=66.8
Q ss_pred ccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc-----
Q 030024 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL----- 125 (184)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~-~~yl~~~k~lGF~~IEISdGti----- 125 (184)
.-|+-|=||+||..+.|.+.|++.++..+++ +.+.+. .|+.+.-+|+.+ ++.++.+++.|++.|.|.--|.
T Consensus 65 ~~i~~iy~GGGTps~l~~~~l~~ll~~i~~~-~~~~~~--~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L 141 (400)
T PRK07379 65 QPLQTVFFGGGTPSLLSVEQLERILTTLDQR-FGIAPD--AEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELL 141 (400)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHHh-CCCCCC--CEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHH
Confidence 4589999999999999999999999999875 222221 233333344443 5788889999999888866555
Q ss_pred -----cCChhHHHHHHHHHHHCCCe
Q 030024 126 -----EIPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~Gf~ 145 (184)
..+.++-.+.++.+++.||.
T Consensus 142 ~~l~R~~~~~~~~~ai~~l~~~G~~ 166 (400)
T PRK07379 142 ALCGRSHRVKDIFAAVDLIHQAGIE 166 (400)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCC
Confidence 35666777888999999987
No 9
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.098 Score=47.63 Aligned_cols=93 Identities=16% Similarity=0.186 Sum_probs=66.4
Q ss_pred HHHHHHHhhcccccEEEeeCc-----ccc-ccChhHHHHHHHHHHhCCceecC-c-cHHHHHHHhCCchHHHHHHHHHHc
Q 030024 42 VLEDIFESMGQFVDGLKFSGG-----SHS-LMPKPFIEEVVKRAHQHDVYVST-G-DWAEHLIRNGPSAFKEYVEDCKQV 113 (184)
Q Consensus 42 ~leDlLe~ag~yID~lKfg~G-----Ts~-l~p~~~L~eKI~l~~~~gV~v~~-G-tlfE~al~qg~~~~~~yl~~~k~l 113 (184)
.++++-.......|-|=+|.- ..+ -++.+.|++-|+++|+||+++|- . +++-..-.. .+.+|++.+.++
T Consensus 15 ~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~---~~~~~l~~l~e~ 91 (347)
T COG0826 15 NLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELE---TLERYLDRLVEL 91 (347)
T ss_pred CHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhh---HHHHHHHHHHHc
Confidence 555555554444888877743 122 24556699999999999997764 4 543322222 478999999999
Q ss_pred CCCEEEecCCcccCChhHHHHHHHHHHHCC--CeEc
Q 030024 114 GFDTIELNVGSLEIPEETLLRYVRLVKSAG--LKAK 147 (184)
Q Consensus 114 GF~~IEISdGti~i~~~~r~~lI~~~~~~G--f~v~ 147 (184)
|.|+|+++| .-+|+.+++.| +.+.
T Consensus 92 GvDaviv~D----------pg~i~l~~e~~p~l~ih 117 (347)
T COG0826 92 GVDAVIVAD----------PGLIMLARERGPDLPIH 117 (347)
T ss_pred CCCEEEEcC----------HHHHHHHHHhCCCCcEE
Confidence 999999999 67888888888 6553
No 10
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=95.15 E-value=0.065 Score=47.91 Aligned_cols=98 Identities=15% Similarity=0.280 Sum_probs=70.4
Q ss_pred cccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc-----
Q 030024 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE----- 126 (184)
Q Consensus 53 yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~-~~yl~~~k~lGF~~IEISdGti~----- 126 (184)
-|+.|=||+||-.+.+.+.|.+.++..+++- .+..+ .|+.+.-+|+.+ ++.++.++++|++.|.|+--+.+
T Consensus 51 ~v~~i~~GGGtPs~l~~~~l~~ll~~i~~~~-~~~~~--~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~ 127 (360)
T TIGR00539 51 PLESIFIGGGTPNTLSVEAFERLFESIYQHA-SLSDD--CEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLL 127 (360)
T ss_pred cccEEEeCCCchhcCCHHHHHHHHHHHHHhC-CCCCC--CEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHH
Confidence 4889999999999999999999998887531 11112 344443344443 57888999999999998877663
Q ss_pred -----CChhHHHHHHHHHHHCCCe-Ecc--ccccc
Q 030024 127 -----IPEETLLRYVRLVKSAGLK-AKP--KFAVM 153 (184)
Q Consensus 127 -----i~~~~r~~lI~~~~~~Gf~-v~~--EvG~K 153 (184)
-+.++-.+.|+.+++.||. |-. =+|..
T Consensus 128 ~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlP 162 (360)
T TIGR00539 128 FLGRQHSAKNIAPAIETALKSGIENISLDLMYGLP 162 (360)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCC
Confidence 4567778899999999996 433 45553
No 11
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=95.14 E-value=0.093 Score=47.33 Aligned_cols=89 Identities=15% Similarity=0.250 Sum_probs=70.0
Q ss_pred ccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc-----
Q 030024 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL----- 125 (184)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~-~~yl~~~k~lGF~~IEISdGti----- 125 (184)
..++-|=||+||-.+.+.+.|++.++.++++ + .++ .|+.+.-+|+.+ ++.++.+++.|++.|.|.--|.
T Consensus 55 ~~~~tiy~GGGTPs~L~~~~l~~ll~~i~~~-~--~~~--~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL 129 (353)
T PRK05904 55 KQFKTIYLGGGTPNCLNDQLLDILLSTIKPY-V--DNN--CEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNIL 129 (353)
T ss_pred CCeEEEEECCCccccCCHHHHHHHHHHHHHh-c--CCC--CeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHH
Confidence 5588999999999999999999999999987 2 222 245554556554 6899999999999998876665
Q ss_pred -----cCChhHHHHHHHHHHHCCCe
Q 030024 126 -----EIPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~Gf~ 145 (184)
.-+.++-.+.|+.+++.||.
T Consensus 130 ~~l~R~~~~~~~~~ai~~lr~~G~~ 154 (353)
T PRK05904 130 KQLNRTHTIQDSKEAINLLHKNGIY 154 (353)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 34556777899999999986
No 12
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=95.11 E-value=0.093 Score=47.50 Aligned_cols=89 Identities=22% Similarity=0.315 Sum_probs=57.9
Q ss_pred cccccEEEeeCccccccChhHHHHHHHHHHhCCceecC--------c-cHHHHHHHhCCc----hHHHHHHHHHHcCCCE
Q 030024 51 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--------G-DWAEHLIRNGPS----AFKEYVEDCKQVGFDT 117 (184)
Q Consensus 51 g~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~--------G-tlfE~al~qg~~----~~~~yl~~~k~lGF~~ 117 (184)
=+|||.. .-|+-+.+..+ =..-|+.||+|||+|.+ + .+++.++.++++ -+++.++.|+.+|||.
T Consensus 30 W~yvD~f-vywsh~~~~iP--p~~~idaAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDG 106 (339)
T cd06547 30 WQYVDTF-VYFSHSAVTIP--PADWINAAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDG 106 (339)
T ss_pred hhhhhee-ecccCccccCC--CcHHHHHHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCCCc
Confidence 3688887 44554444433 25678899999999973 2 366767765221 2789999999999999
Q ss_pred EEecCCcccCChhHHHH---HHHHHHHC
Q 030024 118 IELNVGSLEIPEETLLR---YVRLVKSA 142 (184)
Q Consensus 118 IEISdGti~i~~~~r~~---lI~~~~~~ 142 (184)
+=|+-=+.--+.+.+.+ .++.+++.
T Consensus 107 w~iN~E~~~~~~~~~~~l~~F~~~L~~~ 134 (339)
T cd06547 107 WLINIETELGDAEKAKRLIAFLRYLKAK 134 (339)
T ss_pred eEeeeeccCCcHHHHHHHHHHHHHHHHH
Confidence 88876665423444434 44444444
No 13
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=95.04 E-value=0.078 Score=49.02 Aligned_cols=90 Identities=21% Similarity=0.415 Sum_probs=66.1
Q ss_pred cccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc-----
Q 030024 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE----- 126 (184)
Q Consensus 53 yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~-~~~yl~~~k~lGF~~IEISdGti~----- 126 (184)
-|+-|-||+||..+++.+.|.+.++.++++ ..+..+ .|+.+.-+|+. -++.++.+++.||+.|.|+--+.+
T Consensus 102 ~v~~I~fgGGtP~~l~~~~l~~ll~~i~~~-~~~~~~--~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~ 178 (455)
T TIGR00538 102 HVSQLHWGGGTPTYLSPEQISRLMKLIREN-FPFNAD--AEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQ 178 (455)
T ss_pred ceEEEEECCCCcCCCCHHHHHHHHHHHHHh-CCCCCC--CeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHH
Confidence 477889999999999999999999999986 111111 12222222223 367899999999999999866653
Q ss_pred -----CChhHHHHHHHHHHHCCCe
Q 030024 127 -----IPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 127 -----i~~~~r~~lI~~~~~~Gf~ 145 (184)
-+.++-.+.|+.+++.||+
T Consensus 179 ~l~r~~~~~~~~~ai~~l~~~G~~ 202 (455)
T TIGR00538 179 AVNRIQPEEMIFELMNHAREAGFT 202 (455)
T ss_pred HhCCCCCHHHHHHHHHHHHhcCCC
Confidence 3556667899999999995
No 14
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=94.98 E-value=0.089 Score=45.68 Aligned_cols=108 Identities=13% Similarity=0.079 Sum_probs=84.1
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchH
Q 030024 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (184)
Q Consensus 24 ~GlT~V~DkG~s~~~g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~ 103 (184)
.=+..+.+++- ...+|+......-||++.+++..+.+ +.+++-++.++++|..|+.+ +|.+....++.+
T Consensus 72 ~~~~~~~~~~~------~~~~~l~~a~~~gv~~iri~~~~~~~---~~~~~~i~~ak~~G~~v~~~--~~~a~~~~~~~~ 140 (266)
T cd07944 72 TKIAVMVDYGN------DDIDLLEPASGSVVDMIRVAFHKHEF---DEALPLIKAIKEKGYEVFFN--LMAISGYSDEEL 140 (266)
T ss_pred CEEEEEECCCC------CCHHHHHHHhcCCcCEEEEecccccH---HHHHHHHHHHHHCCCeEEEE--EEeecCCCHHHH
Confidence 34555555552 14567777777889999999877644 55899999999999988864 111122455688
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 030024 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (184)
.++++.+.+.|.+.|-|.|-.-.+.+++-.++++.++++
T Consensus 141 ~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~ 179 (266)
T cd07944 141 LELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSN 179 (266)
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 889999999999999999999999999999999999875
No 15
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=94.96 E-value=0.056 Score=45.58 Aligned_cols=57 Identities=23% Similarity=0.392 Sum_probs=42.1
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHCCCeEc
Q 030024 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAK 147 (184)
Q Consensus 90 tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~Gf~v~ 147 (184)
|.|+..+-++ -.+++.++.++++||+.||++-.. ...+.++..++-+.+++.|+++-
T Consensus 6 g~~~~~~~~~-~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~ 69 (284)
T PRK13210 6 GIYEKALPKH-LSWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIP 69 (284)
T ss_pred chhhhhcCCC-CCHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCce
Confidence 4556666442 368899999999999999997322 24456777788888999999864
No 16
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=94.60 E-value=0.18 Score=45.39 Aligned_cols=118 Identities=12% Similarity=0.062 Sum_probs=89.4
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchH
Q 030024 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (184)
Q Consensus 24 ~GlT~V~DkG~s~~~g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~ 103 (184)
.=+++++.||. + ..+|+-.....-||.+.+... ....+.+++-|+.+|++|..++.. ++.+....++.+
T Consensus 78 ~~~~~ll~pg~----~--~~~dl~~a~~~gvd~iri~~~---~~e~~~~~~~i~~ak~~G~~v~~~--l~~a~~~~~e~l 146 (337)
T PRK08195 78 AKIAALLLPGI----G--TVDDLKMAYDAGVRVVRVATH---CTEADVSEQHIGLARELGMDTVGF--LMMSHMAPPEKL 146 (337)
T ss_pred CEEEEEeccCc----c--cHHHHHHHHHcCCCEEEEEEe---cchHHHHHHHHHHHHHCCCeEEEE--EEeccCCCHHHH
Confidence 45677778875 2 346776667778999998863 445577999999999999987763 223334445577
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccc
Q 030024 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (184)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG~K 153 (184)
.++.+.+.++|.+.|-|.|-.-.+.+++-.++|+.++++ +....++|..
T Consensus 147 ~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~-l~~~i~ig~H 195 (337)
T PRK08195 147 AEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAA-LKPDTQVGFH 195 (337)
T ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHh-cCCCCeEEEE
Confidence 788888999999999999999999999999999999986 4333445554
No 17
>PRK05660 HemN family oxidoreductase; Provisional
Probab=94.59 E-value=0.077 Score=48.06 Aligned_cols=92 Identities=18% Similarity=0.291 Sum_probs=68.2
Q ss_pred ccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc----
Q 030024 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE---- 126 (184)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~-~~~yl~~~k~lGF~~IEISdGti~---- 126 (184)
.-|+-|=||+||-.+.+.+.|.+.++.++++= .+.++ .|+.+.-+|+. -++.++.++++||+.|.|+--+.+
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~-~~~~~--~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L 133 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRLLDGVRARL-PFAPD--AEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKL 133 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhC-CCCCC--cEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHH
Confidence 45899999999999999999999999998741 11111 24434333333 347888899999999998876663
Q ss_pred ------CChhHHHHHHHHHHHCCCeE
Q 030024 127 ------IPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 127 ------i~~~~r~~lI~~~~~~Gf~v 146 (184)
-+.++-.+.|+.+++.||..
T Consensus 134 ~~l~r~~~~~~~~~ai~~~~~~G~~~ 159 (378)
T PRK05660 134 KRLGRIHGPDEAKRAAKLAQGLGLRS 159 (378)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCCe
Confidence 35667778899999999964
No 18
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=94.58 E-value=0.14 Score=47.40 Aligned_cols=89 Identities=24% Similarity=0.441 Sum_probs=67.1
Q ss_pred cccEEEeeCccccccChhHHHHHHHHHHhC-CceecCccHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc----
Q 030024 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE---- 126 (184)
Q Consensus 53 yID~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~v~~GtlfE~al~qg~~~-~~~yl~~~k~lGF~~IEISdGti~---- 126 (184)
-|+-|=||+||..+.|.+.|++.++.++++ ++ ..+ .|+.+.-+|+. -++.++.++++||+.|.|+--+.+
T Consensus 103 ~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~--~~~--~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl 178 (453)
T PRK13347 103 RVSQLHWGGGTPTILNPDQFERLMAALRDAFDF--APE--AEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQ 178 (453)
T ss_pred eEEEEEEcCcccccCCHHHHHHHHHHHHHhCCC--CCC--ceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHH
Confidence 367788999999999999999999999885 22 111 13222223333 378999999999999999876663
Q ss_pred ------CChhHHHHHHHHHHHCCCe
Q 030024 127 ------IPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 127 ------i~~~~r~~lI~~~~~~Gf~ 145 (184)
-+.++-.+.|+.+++.||.
T Consensus 179 ~~l~R~~~~~~~~~ai~~lr~~G~~ 203 (453)
T PRK13347 179 KAINRIQPEEMVARAVELLRAAGFE 203 (453)
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCCC
Confidence 5667778999999999996
No 19
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=94.47 E-value=0.13 Score=47.42 Aligned_cols=91 Identities=14% Similarity=0.269 Sum_probs=66.0
Q ss_pred ccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc------
Q 030024 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE------ 126 (184)
Q Consensus 54 ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~-~~yl~~~k~lGF~~IEISdGti~------ 126 (184)
|.-+=||+||-.+.+.+.|++.++.++++- .+.++. .|+.+.-+|+.+ ++.++.++++||+.|.|+--|.+
T Consensus 92 i~~i~~GGGTPs~l~~~~l~~Ll~~i~~~~-~~~~~~-~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~ 169 (430)
T PRK08208 92 FASFAVGGGTPTLLNAAELEKLFDSVERVL-GVDLGN-IPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHA 169 (430)
T ss_pred eeEEEEcCCccccCCHHHHHHHHHHHHHhC-CCCCCC-ceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHH
Confidence 667889999999999999999999987642 122211 133333334343 78899999999999999876662
Q ss_pred ----CChhHHHHHHHHHHHCCCeE
Q 030024 127 ----IPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 127 ----i~~~~r~~lI~~~~~~Gf~v 146 (184)
-+.++-.+.|+.+++.||.+
T Consensus 170 l~R~~~~~~~~~ai~~l~~~g~~~ 193 (430)
T PRK08208 170 LHRPQKRADVHQALEWIRAAGFPI 193 (430)
T ss_pred hCCCCCHHHHHHHHHHHHHcCCCe
Confidence 24566678899999999875
No 20
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=94.47 E-value=0.18 Score=43.85 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=79.1
Q ss_pred CCCCCCcchhHHHHHHHhhccc-ccEEEeeCccccccChhHHHHHHHHHHhCCceecCc---cHHHHHHHhCCchHHHHH
Q 030024 32 PHYTLSSSHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYV 107 (184)
Q Consensus 32 kG~s~~~g~~~leDlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G---tlfE~al~qg~~~~~~yl 107 (184)
+|+... +....++.++.+.+. +|.+-+....+-+ +.+++-|+.++++|..+... ++. -...++.+.++.
T Consensus 83 ~~~~~~-p~~~~~~di~~~~~~g~~~iri~~~~~~~---~~~~~~i~~ak~~G~~v~~~i~~~~~---~~~~~~~~~~~~ 155 (275)
T cd07937 83 VGYRHY-PDDVVELFVEKAAKNGIDIFRIFDALNDV---RNLEVAIKAVKKAGKHVEGAICYTGS---PVHTLEYYVKLA 155 (275)
T ss_pred cCccCC-CcHHHHHHHHHHHHcCCCEEEEeecCChH---HHHHHHHHHHHHCCCeEEEEEEecCC---CCCCHHHHHHHH
Confidence 444333 334466677666665 8999998766553 56999999999999876642 121 122345778888
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 030024 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (184)
+.+.+.|.+.|-|.|-.-.+.+++-.++|+.++++
T Consensus 156 ~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~ 190 (275)
T cd07937 156 KELEDMGADSICIKDMAGLLTPYAAYELVKALKKE 190 (275)
T ss_pred HHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999986
No 21
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=94.23 E-value=0.12 Score=47.85 Aligned_cols=89 Identities=20% Similarity=0.356 Sum_probs=66.6
Q ss_pred cccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc-----
Q 030024 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE----- 126 (184)
Q Consensus 53 yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~-~~~yl~~~k~lGF~~IEISdGti~----- 126 (184)
-|+.+=||+||..+.+.+.|.+.++.++++- .+.++ .|+.+.-+|+. -++.++.+++.|++.|.|+--+.+
T Consensus 102 ~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~~-~~~~~--~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~ 178 (453)
T PRK09249 102 PVSQLHWGGGTPTFLSPEQLRRLMALLREHF-NFAPD--AEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQK 178 (453)
T ss_pred ceEEEEECCcccccCCHHHHHHHHHHHHHhC-CCCCC--CEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHH
Confidence 4889999999999999999999999998761 11122 12222222323 368889999999999999876663
Q ss_pred -----CChhHHHHHHHHHHHCCC
Q 030024 127 -----IPEETLLRYVRLVKSAGL 144 (184)
Q Consensus 127 -----i~~~~r~~lI~~~~~~Gf 144 (184)
-+.++-.+.|+.+++.||
T Consensus 179 ~l~r~~~~~~~~~ai~~l~~~G~ 201 (453)
T PRK09249 179 AVNRIQPFEFTFALVEAARELGF 201 (453)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCC
Confidence 566777889999999999
No 22
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=93.88 E-value=0.7 Score=41.21 Aligned_cols=114 Identities=12% Similarity=0.238 Sum_probs=78.5
Q ss_pred chhHHHHHHHhhcc-cccEEEeeCccccccChhHHHHHHHHHHhC--CceecCccHHHHHH---HhCCchHHHHHHHHHH
Q 030024 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLI---RNGPSAFKEYVEDCKQ 112 (184)
Q Consensus 39 g~~~leDlLe~ag~-yID~lKfg~GTs~l~p~~~L~eKI~l~~~~--gV~v~~GtlfE~al---~qg~~~~~~yl~~~k~ 112 (184)
.+.++.+.++.+-+ .+.-+-|..|.....+.+.+.+.++..+++ ++.++.-|=.|+.+ .-| -..++.++..|+
T Consensus 71 s~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g-~~~~e~l~~Lke 149 (343)
T TIGR03551 71 SLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSG-LSVEEALKRLKE 149 (343)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 44455544444433 367788888877777888889999999988 46655434455432 223 346899999999
Q ss_pred cCCCEEE-ecCCcc-----------cCChhHHHHHHHHHHHCCCeEccccccccC
Q 030024 113 VGFDTIE-LNVGSL-----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFN 155 (184)
Q Consensus 113 lGF~~IE-ISdGti-----------~i~~~~r~~lI~~~~~~Gf~v~~EvG~K~~ 155 (184)
.|++.+- .+.-+. .++.++|.+.|+.+++.|+++-+ |.-.+
T Consensus 150 AGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s--~~i~G 202 (343)
T TIGR03551 150 AGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTA--TIMYG 202 (343)
T ss_pred hCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccc--eEEEe
Confidence 9999884 222222 25788999999999999998855 44444
No 23
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=93.85 E-value=0.33 Score=43.73 Aligned_cols=119 Identities=12% Similarity=0.057 Sum_probs=89.4
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchH
Q 030024 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (184)
Q Consensus 24 ~GlT~V~DkG~s~~~g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~ 103 (184)
.=+++++.||. + ..+|+-.....-||.+-+... ....+.+++-|+.+|+.|..++.. ++.+....++.+
T Consensus 77 ~~~~~ll~pg~----~--~~~dl~~a~~~gvd~iri~~~---~~e~d~~~~~i~~ak~~G~~v~~~--l~~s~~~~~e~l 145 (333)
T TIGR03217 77 AKVAVLLLPGI----G--TVHDLKAAYDAGARTVRVATH---CTEADVSEQHIGMARELGMDTVGF--LMMSHMTPPEKL 145 (333)
T ss_pred CEEEEEeccCc----c--CHHHHHHHHHCCCCEEEEEec---cchHHHHHHHHHHHHHcCCeEEEE--EEcccCCCHHHH
Confidence 45788888885 2 346665555667999998863 445577999999999999877642 223334455678
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcccccccc
Q 030024 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMF 154 (184)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG~K~ 154 (184)
-++.+.+.+.|.++|-|.|-.-.+.+++-.++|+.++++ +.+-.++|...
T Consensus 146 ~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~-l~~~i~ig~H~ 195 (333)
T TIGR03217 146 AEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAV-LKPETQVGFHA 195 (333)
T ss_pred HHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHh-CCCCceEEEEe
Confidence 888889999999999999999999999999999999876 43223466653
No 24
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=93.77 E-value=0.28 Score=42.81 Aligned_cols=106 Identities=14% Similarity=0.211 Sum_probs=72.6
Q ss_pred chhHHHHHHH-hhcccccEEEeeCccc-cccChhHHHH-----------------HHHHHH--hCCceecCccHHHHHHH
Q 030024 39 SHNVLEDIFE-SMGQFVDGLKFSGGSH-SLMPKPFIEE-----------------VVKRAH--QHDVYVSTGDWAEHLIR 97 (184)
Q Consensus 39 g~~~leDlLe-~ag~yID~lKfg~GTs-~l~p~~~L~e-----------------KI~l~~--~~gV~v~~GtlfE~al~ 97 (184)
.++.+.+++. ..-.-+|+|=+|+=.| .+.+-..+++ .++-.+ ..++++..=|++...++
T Consensus 24 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~ 103 (258)
T PRK13111 24 DLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQ 103 (258)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhh
Confidence 3344555333 4455699999998542 2222222322 222222 24555444478888887
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccc
Q 030024 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFA 151 (184)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG 151 (184)
+| +++|++.|++.|++.+=|. +||.++..++++.++++|+..++=+.
T Consensus 104 ~G---~e~f~~~~~~aGvdGviip----DLp~ee~~~~~~~~~~~gl~~I~lva 150 (258)
T PRK13111 104 YG---VERFAADAAEAGVDGLIIP----DLPPEEAEELRAAAKKHGLDLIFLVA 150 (258)
T ss_pred cC---HHHHHHHHHHcCCcEEEEC----CCCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 75 9999999999999999996 68899999999999999999887443
No 25
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=93.72 E-value=0.26 Score=42.14 Aligned_cols=106 Identities=20% Similarity=0.227 Sum_probs=78.4
Q ss_pred HHHHHhhcccccEEEeeCccccccCh-----------hHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHH
Q 030024 44 EDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQ 112 (184)
Q Consensus 44 eDlLe~ag~yID~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~ 112 (184)
+|+-......+|.+.+...+|-.+.. +.+++-++.++++|..|..+- |.+-...++.+.+..+.+.+
T Consensus 73 ~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~--~~~~~~~~~~~~~~~~~~~~ 150 (259)
T cd07939 73 EDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA--EDASRADPDFLIEFAEVAQE 150 (259)
T ss_pred HHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee--ccCCCCCHHHHHHHHHHHHH
Confidence 33333344468999998877765432 347789999999999888763 22223345578888888899
Q ss_pred cCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcccccccc
Q 030024 113 VGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMF 154 (184)
Q Consensus 113 lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG~K~ 154 (184)
.|.+.|-|.|-.-.+.+++-.++|+.++++ +. .++|..+
T Consensus 151 ~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~--~~l~~H~ 189 (259)
T cd07939 151 AGADRLRFADTVGILDPFTTYELIRRLRAA-TD--LPLEFHA 189 (259)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHHHHHh-cC--CeEEEEe
Confidence 999999999999999999999999999976 33 2466654
No 26
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=93.54 E-value=0.28 Score=44.89 Aligned_cols=91 Identities=18% Similarity=0.358 Sum_probs=67.8
Q ss_pred ccccEEEeeCccccccChhHHHHHHHHHHhCC-ceecCccHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc---
Q 030024 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-VYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE--- 126 (184)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~g-V~v~~GtlfE~al~qg~~~~-~~yl~~~k~lGF~~IEISdGti~--- 126 (184)
..|+-|=||+||-.+.+.+.|++.++.++++. +. .-.|+.+.-+|+.+ ++.++.++++|++.|.|.--|.+
T Consensus 61 ~~i~tiy~GGGTPs~l~~~~l~~ll~~i~~~~~~~----~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~ 136 (390)
T PRK06582 61 KYIKSIFFGGGTPSLMNPVIVEGIINKISNLAIID----NQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDD 136 (390)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHHhCCCC----CCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHH
Confidence 46999999999999999999999999999863 21 11244444466665 78999999999999988766652
Q ss_pred -------CChhHHHHHHHHHHHCCCeE
Q 030024 127 -------IPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 127 -------i~~~~r~~lI~~~~~~Gf~v 146 (184)
-+.++-.+.++.+++.+..|
T Consensus 137 L~~lgR~h~~~~~~~ai~~~~~~~~~v 163 (390)
T PRK06582 137 LKKLGRTHDCMQAIKTIEAANTIFPRV 163 (390)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHhCCcE
Confidence 24556667788887775444
No 27
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=93.33 E-value=0.42 Score=41.01 Aligned_cols=118 Identities=13% Similarity=0.062 Sum_probs=85.5
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchH
Q 030024 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (184)
Q Consensus 24 ~GlT~V~DkG~s~~~g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~ 103 (184)
.-++++..++. + ..+|+-.....-+|.+-+..-.+- .+.+++-++.+|++|..+...- |.+....++.+
T Consensus 75 ~~~~~~~~~~~----~--~~~~i~~a~~~g~~~iri~~~~s~---~~~~~~~i~~ak~~G~~v~~~~--~~~~~~~~~~~ 143 (263)
T cd07943 75 AKLGVLLLPGI----G--TVDDLKMAADLGVDVVRVATHCTE---ADVSEQHIGAARKLGMDVVGFL--MMSHMASPEEL 143 (263)
T ss_pred CEEEEEecCCc----c--CHHHHHHHHHcCCCEEEEEechhh---HHHHHHHHHHHHHCCCeEEEEE--EeccCCCHHHH
Confidence 34555666654 2 246665556667999988765543 3569999999999999776531 22233344578
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcccccccc
Q 030024 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMF 154 (184)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG~K~ 154 (184)
.++.+.+.+.|.+.|-+.|-+-.+.+++-.++++.++++ +.+ -.+|..+
T Consensus 144 ~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~-~~l~~H~ 192 (263)
T cd07943 144 AEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREA-LDP-TPVGFHG 192 (263)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHh-CCC-ceEEEEe
Confidence 888899999999999999999999999999999999886 222 2456553
No 28
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=93.32 E-value=0.15 Score=43.45 Aligned_cols=55 Identities=25% Similarity=0.437 Sum_probs=41.5
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHCCCeEc
Q 030024 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAK 147 (184)
Q Consensus 92 fE~al~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~Gf~v~ 147 (184)
|+.++.++ -.+.+-++.++++||+.|||+-+. .+++.++...+-+.+++.|+++-
T Consensus 8 ~~~~~~~~-~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 8 YEKALPKG-ECWLERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred ehhhCCCC-CCHHHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCce
Confidence 34455532 367888888999999999997443 35577888888899999999875
No 29
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=93.25 E-value=1.1 Score=40.30 Aligned_cols=89 Identities=20% Similarity=0.317 Sum_probs=61.7
Q ss_pred cccEEEeeCccccccChhHHHHHHHHHHhC-CceecCccHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc-----
Q 030024 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL----- 125 (184)
Q Consensus 53 yID~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~v~~GtlfE~al~qg~~~-~~~yl~~~k~lGF~~IEISdGti----- 125 (184)
-|+.|=||+||..+.+.+.|++.++.++++ ++.. ..|+.+.-+|+. -++.++.+++.|++.|.|+--|.
T Consensus 51 ~i~~i~~gGGtpt~l~~~~l~~ll~~i~~~~~~~~----~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l 126 (377)
T PRK08599 51 KLKTIYIGGGTPTALSAEQLERLLTAIHRNLPLSG----LEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELL 126 (377)
T ss_pred ceeEEEeCCCCcccCCHHHHHHHHHHHHHhCCCCC----CCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHH
Confidence 366778889998888888899999888885 3210 012222122222 25778888888999988877666
Q ss_pred -----cCChhHHHHHHHHHHHCCCe
Q 030024 126 -----EIPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~Gf~ 145 (184)
..+.++..+.|+.+++.||.
T Consensus 127 ~~l~r~~~~~~~~~~i~~l~~~g~~ 151 (377)
T PRK08599 127 KKIGRTHNEEDVYEAIANAKKAGFD 151 (377)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 25566778888889988886
No 30
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=93.22 E-value=0.17 Score=45.73 Aligned_cols=92 Identities=16% Similarity=0.221 Sum_probs=65.1
Q ss_pred ccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHH-HHHHHHHHcCCCEEEecCCcc-----
Q 030024 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFK-EYVEDCKQVGFDTIELNVGSL----- 125 (184)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~-~yl~~~k~lGF~~IEISdGti----- 125 (184)
.-|+-|=||+||..+.|.+.|++.++.++++= .+.+ -.|+.+.-+|+.++ +.++.+++.||+.|.|---|.
T Consensus 54 ~~i~tiy~GGGTPs~l~~~~L~~ll~~i~~~f-~~~~--~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL 130 (380)
T PRK09057 54 RTLTSIFFGGGTPSLMQPETVAALLDAIARLW-PVAD--DIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADL 130 (380)
T ss_pred CCcCeEEeCCCccccCCHHHHHHHHHHHHHhC-CCCC--CccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHH
Confidence 35889999999999999999999999998731 1111 13444444555544 889999999999888755544
Q ss_pred -----cCChhHHHHHHHHHHHCCCeE
Q 030024 126 -----EIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~Gf~v 146 (184)
.-+.++-.+.|+.+++.+..|
T Consensus 131 ~~l~R~~~~~~~~~ai~~~~~~~~~v 156 (380)
T PRK09057 131 RFLGRLHSVAEALAAIDLAREIFPRV 156 (380)
T ss_pred HHcCCCCCHHHHHHHHHHHHHhCccE
Confidence 224455567788888876555
No 31
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=92.84 E-value=0.52 Score=41.77 Aligned_cols=106 Identities=14% Similarity=0.186 Sum_probs=78.2
Q ss_pred chhHHHHHHHh-hcccccEEEeeCcccc-ccC-----------------hhHHHHHHHHHHhCCceecCc--cHHHHHHH
Q 030024 39 SHNVLEDIFES-MGQFVDGLKFSGGSHS-LMP-----------------KPFIEEVVKRAHQHDVYVSTG--DWAEHLIR 97 (184)
Q Consensus 39 g~~~leDlLe~-ag~yID~lKfg~GTs~-l~p-----------------~~~L~eKI~l~~~~gV~v~~G--tlfE~al~ 97 (184)
++..+.+++.. --.-.|++=||+=.|= +++ .+..-+.++..++.++.+.-+ |+.--.+.
T Consensus 29 ~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~ 108 (265)
T COG0159 29 DLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFN 108 (265)
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHH
Confidence 34455555554 4455899999986541 222 223445666677666765555 88888888
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccc
Q 030024 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFA 151 (184)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG 151 (184)
+| +++|++.|++.|++.+=| .+||.|+..++...++++|+..++=+-
T Consensus 109 ~G---ie~F~~~~~~~GvdGliv----pDLP~ee~~~~~~~~~~~gi~~I~lva 155 (265)
T COG0159 109 YG---IEKFLRRAKEAGVDGLLV----PDLPPEESDELLKAAEKHGIDPIFLVA 155 (265)
T ss_pred hh---HHHHHHHHHHcCCCEEEe----CCCChHHHHHHHHHHHHcCCcEEEEeC
Confidence 86 999999999999998876 579999999999999999999988553
No 32
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=92.80 E-value=1.5 Score=37.83 Aligned_cols=52 Identities=25% Similarity=0.409 Sum_probs=37.2
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCccccccChhHHHHHHHHHHhCCc---eecC-ccHH
Q 030024 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV---YVST-GDWA 92 (184)
Q Consensus 39 g~~~leDlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV---~v~~-Gtlf 92 (184)
...++..+++.+.++ +..|.|.+|--.+.+. +.+.++.++++|+ .+.+ |+++
T Consensus 41 s~eei~~~i~~~~~~gi~~I~~tGGEPll~~~--l~~iv~~l~~~g~~~v~i~TNG~ll 97 (302)
T TIGR02668 41 SPEEIERIVRVASEFGVRKVKITGGEPLLRKD--LIEIIRRIKDYGIKDVSMTTNGILL 97 (302)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECcccccccC--HHHHHHHHHhCCCceEEEEcCchHH
Confidence 555777777765554 7889999898777665 7789999998876 3344 6544
No 33
>PLN02591 tryptophan synthase
Probab=92.76 E-value=0.48 Score=41.26 Aligned_cols=104 Identities=12% Similarity=0.155 Sum_probs=69.9
Q ss_pred hhHHHHHHH-hhcccccEEEeeCccc-cccChhHHHH--------------HHHHHH----hCCceecCccHHHHHHHhC
Q 030024 40 HNVLEDIFE-SMGQFVDGLKFSGGSH-SLMPKPFIEE--------------VVKRAH----QHDVYVSTGDWAEHLIRNG 99 (184)
Q Consensus 40 ~~~leDlLe-~ag~yID~lKfg~GTs-~l~p~~~L~e--------------KI~l~~----~~gV~v~~GtlfE~al~qg 99 (184)
+..+.+++. ..-..+|+|=+|+=.| .+.+-.++++ -.++.+ +.++++..=|++...+..|
T Consensus 15 ~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G 94 (250)
T PLN02591 15 LDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILKRG 94 (250)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhH
Confidence 344444333 3345699999997443 1222222222 222222 2455444337777777774
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcccc
Q 030024 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (184)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~Ev 150 (184)
+++|++.|++.|++.+=|- +||.++..++++.++++|+..++=+
T Consensus 95 ---~~~F~~~~~~aGv~Gviip----DLP~ee~~~~~~~~~~~gl~~I~lv 138 (250)
T PLN02591 95 ---IDKFMATIKEAGVHGLVVP----DLPLEETEALRAEAAKNGIELVLLT 138 (250)
T ss_pred ---HHHHHHHHHHcCCCEEEeC----CCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 9999999999999999887 5889999999999999999987744
No 34
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=92.72 E-value=0.41 Score=42.80 Aligned_cols=89 Identities=13% Similarity=0.259 Sum_probs=59.1
Q ss_pred cccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCc-hHHHHHHHHHHcCCCEEEecCCccc-----
Q 030024 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPS-AFKEYVEDCKQVGFDTIELNVGSLE----- 126 (184)
Q Consensus 53 yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~-~~~~yl~~~k~lGF~~IEISdGti~----- 126 (184)
-++.|=||+||..+.+.+.+++-.+..+++++. ++ .|..+.-+|+ --++.++.+++.|++.|.|+--+.+
T Consensus 51 ~~~~i~~gGGtps~l~~~~l~~L~~~i~~~~~~--~~--~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~ 126 (374)
T PRK05799 51 KIKSIFIGGGTPTYLSLEALEILKETIKKLNKK--ED--LEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLK 126 (374)
T ss_pred ceeEEEECCCcccCCCHHHHHHHHHHHHhCCCC--CC--CEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHH
Confidence 377788999999888888888777777665432 12 1222222222 2467888888889888877665542
Q ss_pred -----CChhHHHHHHHHHHHCCCe
Q 030024 127 -----IPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 127 -----i~~~~r~~lI~~~~~~Gf~ 145 (184)
-+.++-.+.|+.+++.||.
T Consensus 127 ~l~R~~~~~~~~~ai~~l~~~g~~ 150 (374)
T PRK05799 127 YLGRIHTFEEFLENYKLARKLGFN 150 (374)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCC
Confidence 2445666788888888875
No 35
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=92.46 E-value=2.1 Score=34.27 Aligned_cols=98 Identities=17% Similarity=0.374 Sum_probs=68.9
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcC-CCE
Q 030024 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVG-FDT 117 (184)
Q Consensus 39 g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lG-F~~ 117 (184)
.+.++.++++.+..++..+-|.+|-..+.++ +.+-++.+++.|+.++.=| .| ..++.++...+.| .+.
T Consensus 48 ~~~~i~~~i~~~~~~~~~i~~sGGEPll~~~--l~~li~~~~~~g~~v~i~T-------Ng--~~~~~l~~l~~~g~~~~ 116 (191)
T TIGR02495 48 EVEFLLEFLRSRQGLIDGVVITGGEPTLQAG--LPDFLRKVRELGFEVKLDT-------NG--SNPRVLEELLEEGLVDY 116 (191)
T ss_pred CHHHHHHHHHHhcCCCCeEEEECCcccCcHh--HHHHHHHHHHCCCeEEEEe-------CC--CCHHHHHHHHhcCCCcE
Confidence 5668888888888889999999999888776 8999999999998655311 22 1234555566678 488
Q ss_pred EEecCCcc-c----C-----Ch-hHHHHHHHHHHHCCCeEc
Q 030024 118 IELNVGSL-E----I-----PE-ETLLRYVRLVKSAGLKAK 147 (184)
Q Consensus 118 IEISdGti-~----i-----~~-~~r~~lI~~~~~~Gf~v~ 147 (184)
|-||-... + + .. +.-.+.|+.+++.|+.+.
T Consensus 117 v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~~~ 157 (191)
T TIGR02495 117 VAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIPFE 157 (191)
T ss_pred EEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCCEE
Confidence 87754421 1 1 11 145688899999998654
No 36
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=92.42 E-value=0.57 Score=42.55 Aligned_cols=98 Identities=18% Similarity=0.390 Sum_probs=71.9
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 030024 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (184)
Q Consensus 39 g~~~leDlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~ 117 (184)
.+.++..+...+..+ |+=||+.+|==.|=.. |.+.|+..+++++ .|+++.-|.-.+..+.+.+|+.|++.
T Consensus 44 s~eei~~~~~~~~~~Gv~kvRlTGGEPllR~d--l~eIi~~l~~~~~-------~~islTTNG~~L~~~a~~Lk~AGl~r 114 (322)
T COG2896 44 SLEEIRRLVRAFAELGVEKVRLTGGEPLLRKD--LDEIIARLARLGI-------RDLSLTTNGVLLARRAADLKEAGLDR 114 (322)
T ss_pred CHHHHHHHHHHHHHcCcceEEEeCCCchhhcC--HHHHHHHHhhccc-------ceEEEecchhhHHHHHHHHHHcCCcE
Confidence 567888888888888 8889999998776554 9999999998833 34444433345667777799999999
Q ss_pred EEecCCccc------CC----hhHHHHHHHHHHHCCCe
Q 030024 118 IELNVGSLE------IP----EETLLRYVRLVKSAGLK 145 (184)
Q Consensus 118 IEISdGti~------i~----~~~r~~lI~~~~~~Gf~ 145 (184)
|-||-.|++ |. .+.=.+=|+.|.+.||.
T Consensus 115 VNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~ 152 (322)
T COG2896 115 VNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLT 152 (322)
T ss_pred EEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCC
Confidence 999987763 22 12233557888899997
No 37
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=92.42 E-value=0.51 Score=44.70 Aligned_cols=92 Identities=18% Similarity=0.301 Sum_probs=68.1
Q ss_pred ccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHh-CCc-hHHHHHHHHHHcCCCEEEecCCccc---
Q 030024 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRN-GPS-AFKEYVEDCKQVGFDTIELNVGSLE--- 126 (184)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~q-g~~-~~~~yl~~~k~lGF~~IEISdGti~--- 126 (184)
.-|+.+=||+||-.+.+.+.|.+.++.++++-..+. ..-|+.+.. .|+ --++.++.+++.|++.|.|+--|.+
T Consensus 217 ~~v~tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~--~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~v 294 (488)
T PRK08207 217 LKITTIYFGGGTPTSLTAEELERLLEEIYENFPDVK--NVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDET 294 (488)
T ss_pred CceeEEEEeCCCccCCCHHHHHHHHHHHHHhccccC--CceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHH
Confidence 358899999999999999999999999877521110 111333322 222 2467889999999999999877764
Q ss_pred -------CChhHHHHHHHHHHHCCCe
Q 030024 127 -------IPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 127 -------i~~~~r~~lI~~~~~~Gf~ 145 (184)
-+.++-.+.++.+++.||.
T Consensus 295 Lk~igR~ht~e~v~~ai~~ar~~Gf~ 320 (488)
T PRK08207 295 LKAIGRHHTVEDIIEKFHLAREMGFD 320 (488)
T ss_pred HHHhCCCCCHHHHHHHHHHHHhCCCC
Confidence 5778888999999999993
No 38
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=92.29 E-value=0.49 Score=41.06 Aligned_cols=91 Identities=14% Similarity=0.100 Sum_probs=68.0
Q ss_pred cccccEEEeeCccccccCh-----------hHHHHHHHHHHhCCceecCc-c-HHHHHHHhCCchHHHHHHHHHHcCCCE
Q 030024 51 GQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTG-D-WAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (184)
Q Consensus 51 g~yID~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV~v~~G-t-lfE~al~qg~~~~~~yl~~~k~lGF~~ 117 (184)
..-+|.+.+...+|-.+.. +.+++-++++|++|..|+.+ . +++. ....++.+.++++.+.+.|.+.
T Consensus 89 ~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~-~~~~~~~~~~~~~~~~~~g~~~ 167 (273)
T cd07941 89 EAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDG-YKANPEYALATLKAAAEAGADW 167 (273)
T ss_pred hCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEecccc-CCCCHHHHHHHHHHHHhCCCCE
Confidence 3356777777665543222 24688999999999998875 2 4331 1223446777888889999999
Q ss_pred EEecCCcccCChhHHHHHHHHHHHC
Q 030024 118 IELNVGSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~ 142 (184)
|-|.|-.-.+.+++-.++++.++++
T Consensus 168 i~l~DT~G~~~P~~v~~lv~~l~~~ 192 (273)
T cd07941 168 LVLCDTNGGTLPHEIAEIVKEVRER 192 (273)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999986
No 39
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=91.97 E-value=0.49 Score=43.09 Aligned_cols=105 Identities=19% Similarity=0.205 Sum_probs=80.3
Q ss_pred HHHHHHHhhcccccEEEeeCccccccCh-----------hHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHH
Q 030024 42 VLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDC 110 (184)
Q Consensus 42 ~leDlLe~ag~yID~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~ 110 (184)
.++..+++ -+|.+-+...+|-++-+ +.+++-++.++++|..|+.+ +|.+-...++.+.++++.+
T Consensus 80 di~~a~~~---g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~--~ed~~r~~~~~l~~~~~~~ 154 (378)
T PRK11858 80 DIDASIDC---GVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFS--AEDASRTDLDFLIEFAKAA 154 (378)
T ss_pred HHHHHHhC---CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE--eccCCCCCHHHHHHHHHHH
Confidence 34444443 47888888887776433 44778899999999988876 4555555667889999999
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcccccccc
Q 030024 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMF 154 (184)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG~K~ 154 (184)
.+.|.+.|-+.|-.-.+.+++-.++|+.+++. +. ..++..+
T Consensus 155 ~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~-~~--~~l~~H~ 195 (378)
T PRK11858 155 EEAGADRVRFCDTVGILDPFTMYELVKELVEA-VD--IPIEVHC 195 (378)
T ss_pred HhCCCCEEEEeccCCCCCHHHHHHHHHHHHHh-cC--CeEEEEe
Confidence 99999999999999999999999999999876 22 2455543
No 40
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=91.93 E-value=0.77 Score=38.43 Aligned_cols=97 Identities=15% Similarity=0.190 Sum_probs=70.7
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCc-cHHHHHHHhCCchHHHHHH---HHHHcC
Q 030024 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVE---DCKQVG 114 (184)
Q Consensus 39 g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G-tlfE~al~qg~~~~~~yl~---~~k~lG 114 (184)
....+.++++..++|||++|+|+--..-+..+.+++-++.+++++.++..- -+..+- +-...|.+ .+.++|
T Consensus 11 ~~~~a~~i~~~~~~~v~~iKvG~~l~~~~G~~~l~~~i~~l~~~~~~I~~D~K~~Dig-----~t~~~~~~~~~~~~~~g 85 (226)
T PF00215_consen 11 DLEEALRIADELGDYVDIIKVGTPLFLAYGLEALPEIIEELKERGKPIFLDLKLGDIG-----NTVARYAEAGFAAFELG 85 (226)
T ss_dssp SHHHHHHHHHHHGGGSSEEEEEHHHHHHHCHHHHHHHHHHHHHTTSEEEEEEEE-SSH-----HHHHHHHHSCHHHHTTT
T ss_pred CHHHHHHHHHHhcCcceEEEEChHHHhcCChhhHHHHHHHHHHhcCCEeeeeeecccc-----hHHHHHHHHhhhhhcCC
Confidence 567888999999999999999987777777668999999999999777653 122211 12233333 467889
Q ss_pred CCEEEecCCcccCChhHHHHHHHHHHHCC
Q 030024 115 FDTIELNVGSLEIPEETLLRYVRLVKSAG 143 (184)
Q Consensus 115 F~~IEISdGti~i~~~~r~~lI~~~~~~G 143 (184)
+|+|-|+-= .+.+....+++.+++.|
T Consensus 86 aD~vTv~~~---~G~~tl~~~~~~a~~~~ 111 (226)
T PF00215_consen 86 ADAVTVHPF---AGDDTLEAAVKAAKKHG 111 (226)
T ss_dssp ESEEEEEGT---THHHHHHHHHHHHHHTT
T ss_pred CcEEEEecc---CCHHHHHHHHHHHhccC
Confidence 998888643 34677778888888886
No 41
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=91.83 E-value=0.45 Score=40.08 Aligned_cols=47 Identities=15% Similarity=0.262 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-----cCChhHHHHHHHHHHHCCCeEcc
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGSL-----EIPEETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti-----~i~~~~r~~lI~~~~~~Gf~v~~ 148 (184)
.+.+-++.++++||+.||+..+.. +++..+..++-+.+++.|+++..
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s 65 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIG 65 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEE
Confidence 577777778888888888754321 23444556677777777887643
No 42
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=91.58 E-value=2.5 Score=37.06 Aligned_cols=52 Identities=19% Similarity=0.351 Sum_probs=35.9
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCccccccChhHHHHHHHHHHhC----CceecC-ccHH
Q 030024 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQH----DVYVST-GDWA 92 (184)
Q Consensus 39 g~~~leDlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~----gV~v~~-Gtlf 92 (184)
.+.++.++++.+.++ +.-|.|.+|--.+.++ +.+.++.+++. .|.+.+ |+++
T Consensus 50 s~eei~~~i~~~~~~gi~~I~~tGGEPll~~~--l~~li~~i~~~~~~~~i~itTNG~ll 107 (331)
T PRK00164 50 SLEEIERLVRAFVALGVRKVRLTGGEPLLRKD--LEDIIAALAALPGIRDLALTTNGYLL 107 (331)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCcCccC--HHHHHHHHHhcCCCceEEEEcCchhH
Confidence 455777776665555 7778888898777654 77888888876 345555 5543
No 43
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=91.56 E-value=0.37 Score=42.73 Aligned_cols=57 Identities=26% Similarity=0.453 Sum_probs=45.3
Q ss_pred HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHCCCeEcc
Q 030024 91 WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 91 lfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~Gf~v~~ 148 (184)
..|.|+-.+ -+..+=+..+|++|||-||+|-.- ++-+.++|..+++...+.|+..-+
T Consensus 9 IYEKAlp~~-~sW~erl~~AK~~GFDFvEmSvDEsDeRLaRLDWs~~er~~l~~ai~etgv~ipS 72 (287)
T COG3623 9 IYEKALPNG-FSWLERLALAKELGFDFVEMSVDESDERLARLDWSKEERLALVNAIQETGVRIPS 72 (287)
T ss_pred eehhhccCC-CCHHHHHHHHHHcCCCeEEEeccchHHHHHhcCCCHHHHHHHHHHHHHhCCCccc
Confidence 346666554 356777788999999999999753 588999999999999999887633
No 44
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=91.54 E-value=0.17 Score=42.33 Aligned_cols=87 Identities=18% Similarity=0.185 Sum_probs=68.8
Q ss_pred ccEEEeeCcccccc-----------ChhHHHHHHHHHHhCCceecCccHHHHHHH--hCCchHHHHHHHHHHcCCCEEEe
Q 030024 54 VDGLKFSGGSHSLM-----------PKPFIEEVVKRAHQHDVYVSTGDWAEHLIR--NGPSAFKEYVEDCKQVGFDTIEL 120 (184)
Q Consensus 54 ID~lKfg~GTs~l~-----------p~~~L~eKI~l~~~~gV~v~~GtlfE~al~--qg~~~~~~yl~~~k~lGF~~IEI 120 (184)
+|.+-+...++-.+ .-+.+.+-|+.++++|+.+.... |.+.. .+++.+.++++.+.++|.+.|-+
T Consensus 88 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~--~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l 165 (265)
T cd03174 88 VDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL--EDAFGCKTDPEYVLEVAKALEEAGADEISL 165 (265)
T ss_pred cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE--EeecCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 78888887766210 12448889999999999877641 11222 45568999999999999999999
Q ss_pred cCCcccCChhHHHHHHHHHHHC
Q 030024 121 NVGSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 121 SdGti~i~~~~r~~lI~~~~~~ 142 (184)
.|-+-.+.+++..++|+.+++.
T Consensus 166 ~Dt~G~~~P~~v~~li~~l~~~ 187 (265)
T cd03174 166 KDTVGLATPEEVAELVKALREA 187 (265)
T ss_pred chhcCCcCHHHHHHHHHHHHHh
Confidence 9999999999999999999987
No 45
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=91.52 E-value=3.2 Score=31.98 Aligned_cols=87 Identities=23% Similarity=0.323 Sum_probs=59.8
Q ss_pred ccEEEeeCccccccChhHHHHHHHHHHhCC-----ceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---
Q 030024 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-----VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL--- 125 (184)
Q Consensus 54 ID~lKfg~GTs~l~p~~~L~eKI~l~~~~g-----V~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti--- 125 (184)
++.+-|+.|+..+.+.+.+.+.++.++++. ..+...| .+...-++.++.+++.|++.|-||--+.
T Consensus 52 ~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t-------n~~~~~~~~~~~l~~~~~~~i~isl~~~~~~ 124 (216)
T smart00729 52 VGTVFIGGGTPTLLSPEQLEELLEAIREILGLADDVEITIET-------RPGTLTEELLEALKEAGVNRVSLGVQSGSDE 124 (216)
T ss_pred eeEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEe-------CcccCCHHHHHHHHHcCCCeEEEecccCCHH
Confidence 588889999998888665777787777774 2222221 1111236778888899998888876653
Q ss_pred -------cCChhHHHHHHHHHHHCC-CeEc
Q 030024 126 -------EIPEETLLRYVRLVKSAG-LKAK 147 (184)
Q Consensus 126 -------~i~~~~r~~lI~~~~~~G-f~v~ 147 (184)
.-+.+...+.|+.+++.| +.|.
T Consensus 125 ~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~ 154 (216)
T smart00729 125 VLKAINRGHTVEDVLEAVEKLREAGPIKVS 154 (216)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhCCcceE
Confidence 345577888899999999 5543
No 46
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=91.37 E-value=0.53 Score=42.57 Aligned_cols=91 Identities=21% Similarity=0.205 Sum_probs=72.9
Q ss_pred hcccccEEEeeCccccccCh-----------hHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 030024 50 MGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (184)
Q Consensus 50 ag~yID~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~I 118 (184)
...-+|.+-+...+|-++-+ +.+++-|+.++++|..|..+ +|.+-...++.+.++.+.+.+.|.+.|
T Consensus 82 ~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~--~ed~~r~~~~~l~~~~~~~~~~Ga~~i 159 (365)
T TIGR02660 82 ARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVG--GEDASRADPDFLVELAEVAAEAGADRF 159 (365)
T ss_pred HcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEe--ecCCCCCCHHHHHHHHHHHHHcCcCEE
Confidence 33457888888877754322 22558899999999988876 455555566688889999999999999
Q ss_pred EecCCcccCChhHHHHHHHHHHHC
Q 030024 119 ELNVGSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 119 EISdGti~i~~~~r~~lI~~~~~~ 142 (184)
-+.|-.--+.+++-.++|+.++++
T Consensus 160 ~l~DT~G~~~P~~v~~lv~~l~~~ 183 (365)
T TIGR02660 160 RFADTVGILDPFSTYELVRALRQA 183 (365)
T ss_pred EEcccCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999876
No 47
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=91.26 E-value=0.88 Score=39.84 Aligned_cols=108 Identities=12% Similarity=0.154 Sum_probs=72.0
Q ss_pred chhHHHHHHH-hhcccccEEEeeCccc-cccChhHHHHHHHHH------------------HhCCceecCccHHHHHHHh
Q 030024 39 SHNVLEDIFE-SMGQFVDGLKFSGGSH-SLMPKPFIEEVVKRA------------------HQHDVYVSTGDWAEHLIRN 98 (184)
Q Consensus 39 g~~~leDlLe-~ag~yID~lKfg~GTs-~l~p~~~L~eKI~l~------------------~~~gV~v~~GtlfE~al~q 98 (184)
.+..+.+++. ..-.-+|+|=+|+=.| .+.+-..+++--..+ +++++++..=|++...++.
T Consensus 27 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~ 106 (263)
T CHL00200 27 DIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHY 106 (263)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHh
Confidence 3445555443 3334499999997443 223333333322222 2245554433777777777
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccc
Q 030024 99 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (184)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG~K 153 (184)
| +++|++.|++.|++.|=|= ++|.++..++++.++++|+.+.+=+.-.
T Consensus 107 G---~e~F~~~~~~aGvdgviip----DLP~ee~~~~~~~~~~~gi~~I~lv~Pt 154 (263)
T CHL00200 107 G---INKFIKKISQAGVKGLIIP----DLPYEESDYLISVCNLYNIELILLIAPT 154 (263)
T ss_pred C---HHHHHHHHHHcCCeEEEec----CCCHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 5 9999999999999999775 5778999999999999999988755433
No 48
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=91.24 E-value=2.3 Score=37.62 Aligned_cols=96 Identities=26% Similarity=0.406 Sum_probs=60.0
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCccccccChhHHHHHHHHHHhCCceec--C-ccHHHHHHHhCCchHHHHHHHHHHcC
Q 030024 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--T-GDWAEHLIRNGPSAFKEYVEDCKQVG 114 (184)
Q Consensus 39 g~~~leDlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~--~-GtlfE~al~qg~~~~~~yl~~~k~lG 114 (184)
....+.++++.+.+. +..|-|++|--.+.|. +.+.++.++++|+.+. + |+++. ++.++.+++.|
T Consensus 38 ~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~--~~~ii~~~~~~g~~~~l~TNG~ll~----------~e~~~~L~~~g 105 (358)
T TIGR02109 38 TTEEWTDVLTQAAELGVLQLHFSGGEPLARPD--LVELVAHARRLGLYTNLITSGVGLT----------EARLDALADAG 105 (358)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEeCcccccccc--HHHHHHHHHHcCCeEEEEeCCccCC----------HHHHHHHHhCC
Confidence 455666777665443 5668888898887765 7889999999997543 3 65431 34455566777
Q ss_pred CCEEEecCCccc---------C--ChhHHHHHHHHHHHCCCeE
Q 030024 115 FDTIELNVGSLE---------I--PEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 115 F~~IEISdGti~---------i--~~~~r~~lI~~~~~~Gf~v 146 (184)
++.|.||=...+ . +.+.-.+.|+.+++.|+.+
T Consensus 106 ~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v 148 (358)
T TIGR02109 106 LDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPL 148 (358)
T ss_pred CCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCce
Confidence 777777754432 0 1122345566666777654
No 49
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=91.23 E-value=2 Score=36.65 Aligned_cols=104 Identities=16% Similarity=0.271 Sum_probs=66.1
Q ss_pred hHHHHHHHhhc-ccccEEEeeCcc-ccccChhHHHH-----------------HHHHHHh-CCceecCccHHHHHHHhCC
Q 030024 41 NVLEDIFESMG-QFVDGLKFSGGS-HSLMPKPFIEE-----------------VVKRAHQ-HDVYVSTGDWAEHLIRNGP 100 (184)
Q Consensus 41 ~~leDlLe~ag-~yID~lKfg~GT-s~l~p~~~L~e-----------------KI~l~~~-~gV~v~~GtlfE~al~qg~ 100 (184)
..+.+++...- .-+|++=+|.=. -.+++-..++. .++..++ .++++..=+.+...+..|
T Consensus 14 ~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G- 92 (242)
T cd04724 14 ETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQYG- 92 (242)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHhC-
Confidence 34444433332 249999999411 12444444443 3334443 245433224445555554
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccc
Q 030024 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFA 151 (184)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG 151 (184)
+++|++.|++.|++.|=|-| +|.++..++++.++++|+++.+=+.
T Consensus 93 --~~~fi~~~~~aG~~giiipD----l~~ee~~~~~~~~~~~g~~~i~~i~ 137 (242)
T cd04724 93 --LERFLRDAKEAGVDGLIIPD----LPPEEAEEFREAAKEYGLDLIFLVA 137 (242)
T ss_pred --HHHHHHHHHHCCCcEEEECC----CCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 89999999999999998864 5667888999999999998866443
No 50
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=91.22 E-value=0.84 Score=39.23 Aligned_cols=99 Identities=18% Similarity=0.135 Sum_probs=72.7
Q ss_pred HHHHHHHhhc-ccccEEEeeCcccccc-----------ChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHH
Q 030024 42 VLEDIFESMG-QFVDGLKFSGGSHSLM-----------PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVED 109 (184)
Q Consensus 42 ~leDlLe~ag-~yID~lKfg~GTs~l~-----------p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~ 109 (184)
.++..++.-. ..+|.+.+...+|-+. .-+.+++-++.++++|..++.+. |.+-...++.+.++.+.
T Consensus 74 ~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~--~~~~~~~~~~~~~~~~~ 151 (268)
T cd07940 74 DIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSA--EDATRTDLDFLIEVVEA 151 (268)
T ss_pred hHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEee--ecCCCCCHHHHHHHHHH
Confidence 3444444321 2289999877654442 11447789999999999888652 12222344577888889
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 030024 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (184)
+.++|.+.|-+.|-+-.+.+++-.++++.++++
T Consensus 152 ~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~ 184 (268)
T cd07940 152 AIEAGATTINIPDTVGYLTPEEFGELIKKLKEN 184 (268)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999986
No 51
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=91.01 E-value=2.2 Score=37.84 Aligned_cols=51 Identities=22% Similarity=0.299 Sum_probs=34.4
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCce--ecC-ccHHH
Q 030024 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY--VST-GDWAE 93 (184)
Q Consensus 39 g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~--v~~-GtlfE 93 (184)
.+....+.++..|. -.|-|.+|=-.+.|. +.+.++.+++.|+. +.| |++++
T Consensus 60 s~ee~~~~i~e~g~--~~V~i~GGEPLL~pd--l~eiv~~~~~~g~~v~l~TNG~ll~ 113 (318)
T TIGR03470 60 SVEECLRAVDECGA--PVVSIPGGEPLLHPE--IDEIVRGLVARKKFVYLCTNALLLE 113 (318)
T ss_pred CHHHHHHHHHHcCC--CEEEEeCcccccccc--HHHHHHHHHHcCCeEEEecCceehH
Confidence 33344455555553 357788888777765 89999999998864 445 77654
No 52
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=90.98 E-value=3 Score=36.64 Aligned_cols=44 Identities=18% Similarity=0.354 Sum_probs=29.5
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCccccccChhHHHHHHHHHHh-CCc
Q 030024 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQ-HDV 84 (184)
Q Consensus 39 g~~~leDlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~-~gV 84 (184)
.+.++.++++.+.++ |.-|.|.+|--.+.+. +.+.++.+++ .|+
T Consensus 44 s~eei~~~i~~~~~~gv~~V~ltGGEPll~~~--l~~li~~i~~~~gi 89 (334)
T TIGR02666 44 TFEEIERLVRAFVGLGVRKVRLTGGEPLLRKD--LVELVARLAALPGI 89 (334)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECccccccCC--HHHHHHHHHhcCCC
Confidence 555666666655433 7788888888777654 7777777666 354
No 53
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=90.69 E-value=2.6 Score=34.30 Aligned_cols=97 Identities=18% Similarity=0.181 Sum_probs=55.8
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhC-CceecCcc-HHHHHHHhCCchHHHH-HHHHHHcCC
Q 030024 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGD-WAEHLIRNGPSAFKEY-VEDCKQVGF 115 (184)
Q Consensus 39 g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~v~~Gt-lfE~al~qg~~~~~~y-l~~~k~lGF 115 (184)
.+.....+.+..++.||++|+|+ +...+.. ++.--++.+.| +..+.-++ ++ ++. .| ++.+.+.|.
T Consensus 10 ~~~~a~~~~~~l~~~v~~iev~~--~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~------d~~---~~~~~~~~~~Ga 77 (206)
T TIGR03128 10 DIEEALELAEKVADYVDIIEIGT--PLIKNEG-IEAVKEMKEAFPDRKVLADLKTM------DAG---EYEAEQAFAAGA 77 (206)
T ss_pred CHHHHHHHHHHcccCeeEEEeCC--HHHHHhC-HHHHHHHHHHCCCCEEEEEEeec------cch---HHHHHHHHHcCC
Confidence 56677788888899999999964 3333322 22222222332 33333232 22 211 23 555777888
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHCCCeEcccc
Q 030024 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (184)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~Ev 150 (184)
|.|=+.--+ +...-.++|+.+++.|+++.+++
T Consensus 78 d~i~vh~~~---~~~~~~~~i~~~~~~g~~~~~~~ 109 (206)
T TIGR03128 78 DIVTVLGVA---DDATIKGAVKAAKKHGKEVQVDL 109 (206)
T ss_pred CEEEEeccC---CHHHHHHHHHHHHHcCCEEEEEe
Confidence 888544222 33444678888888888887763
No 54
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=90.64 E-value=3.6 Score=30.38 Aligned_cols=95 Identities=23% Similarity=0.413 Sum_probs=69.5
Q ss_pred chhHHHHHHHhhc-cc-ccEEEeeCccccccChhHHHHHHHHHHhC---CceecC---ccHHHHHHHhCCchHHHHHHHH
Q 030024 39 SHNVLEDIFESMG-QF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQH---DVYVST---GDWAEHLIRNGPSAFKEYVEDC 110 (184)
Q Consensus 39 g~~~leDlLe~ag-~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~---gV~v~~---GtlfE~al~qg~~~~~~yl~~~ 110 (184)
.+..+.+.+.... +. +..+=++.|...+.++ ..+++..+++. ++.+.. |++.. +++++.+
T Consensus 29 ~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~~~--~~~~~~~~~~~~~~~~~i~~~t~~~~~~----------~~~l~~l 96 (166)
T PF04055_consen 29 SPEEILEEIKELKQDKGVKEIFFGGGEPTLHPD--FIELLELLRKIKKRGIRISINTNGTLLD----------EELLDEL 96 (166)
T ss_dssp HHHHHHHHHHHHHHHTTHEEEEEESSTGGGSCH--HHHHHHHHHHCTCTTEEEEEEEESTTHC----------HHHHHHH
T ss_pred CHHHHHHHHHHHhHhcCCcEEEEeecCCCcchh--HHHHHHHHHHhhccccceeeeccccchh----------HHHHHHH
Confidence 4445555555552 32 8999999999999987 77777777775 776654 55443 6778889
Q ss_pred HHcCCCEEEecCCccc-----------CChhHHHHHHHHHHHCCCe
Q 030024 111 KQVGFDTIELNVGSLE-----------IPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 111 k~lGF~~IEISdGti~-----------i~~~~r~~lI~~~~~~Gf~ 145 (184)
+++|++.|.+|--+.+ -+.++..+.++.+++.|+.
T Consensus 97 ~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~ 142 (166)
T PF04055_consen 97 KKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGIP 142 (166)
T ss_dssp HHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSE
T ss_pred HhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCC
Confidence 9999999998755542 3456777899999999987
No 55
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=90.62 E-value=3.5 Score=36.48 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=29.3
Q ss_pred chhHHHHHHHhhcc-cccEEEeeCccccccChhHHHHHHHHHHhCC
Q 030024 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD 83 (184)
Q Consensus 39 g~~~leDlLe~ag~-yID~lKfg~GTs~l~p~~~L~eKI~l~~~~g 83 (184)
...++..+++.+.+ -|..|.|.+|.-.+.+. +.+.++.+++++
T Consensus 46 s~eei~~li~~~~~~Gv~~I~~tGGEPllr~d--l~~li~~i~~~~ 89 (329)
T PRK13361 46 SLEELAWLAQAFTELGVRKIRLTGGEPLVRRG--CDQLVARLGKLP 89 (329)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECcCCCcccc--HHHHHHHHHhCC
Confidence 44566666654433 37788898888776654 778888887764
No 56
>PRK09989 hypothetical protein; Provisional
Probab=90.59 E-value=0.56 Score=39.50 Aligned_cols=42 Identities=19% Similarity=0.368 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEc
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~ 147 (184)
.+.+-++.++++||+.||+.. ....+ ..++-+.+++.|+++-
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~-~~~~~---~~~~~~~l~~~Gl~v~ 57 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLF-PYDYS---TLQIQKQLEQNHLTLA 57 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECC-cccCC---HHHHHHHHHHcCCcEE
Confidence 789999999999999999964 22333 3467777889999975
No 57
>PRK07094 biotin synthase; Provisional
Probab=90.51 E-value=3.6 Score=35.89 Aligned_cols=84 Identities=17% Similarity=0.238 Sum_probs=56.6
Q ss_pred ccEEEeeCccccccChhHHHHHHHHHHh-CCceecC--ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----
Q 030024 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQ-HDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL----- 125 (184)
Q Consensus 54 ID~lKfg~GTs~l~p~~~L~eKI~l~~~-~gV~v~~--GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti----- 125 (184)
+..+-|..|....++.+.+.+.++..++ .++.+.. |. .-++.++.+++.|++.|-++--+.
T Consensus 87 ~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~l~i~~~~g~-----------~~~e~l~~Lk~aG~~~v~~glEs~~~~~~ 155 (323)
T PRK07094 87 YRTIVLQSGEDPYYTDEKIADIIKEIKKELDVAITLSLGE-----------RSYEEYKAWKEAGADRYLLRHETADKELY 155 (323)
T ss_pred CCEEEEecCCCCCCCHHHHHHHHHHHHccCCceEEEecCC-----------CCHHHHHHHHHcCCCEEEeccccCCHHHH
Confidence 5667777776555566678888877777 4665432 21 235667778888888776654433
Q ss_pred -----cCChhHHHHHHHHHHHCCCeEcc
Q 030024 126 -----EIPEETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~Gf~v~~ 148 (184)
..+.+++.+.|+.+++.|+.|.+
T Consensus 156 ~~i~~~~s~~~~~~~i~~l~~~Gi~v~~ 183 (323)
T PRK07094 156 AKLHPGMSFENRIACLKDLKELGYEVGS 183 (323)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCeecc
Confidence 46677888888888888887643
No 58
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=90.34 E-value=1.3 Score=38.85 Aligned_cols=108 Identities=16% Similarity=0.271 Sum_probs=72.5
Q ss_pred chhHHHHHHHhhcc-cccEEEeeCccc-cccChhHHHHHH-----------------HHHH--hCCceecCccHHHHHHH
Q 030024 39 SHNVLEDIFESMGQ-FVDGLKFSGGSH-SLMPKPFIEEVV-----------------KRAH--QHDVYVSTGDWAEHLIR 97 (184)
Q Consensus 39 g~~~leDlLe~ag~-yID~lKfg~GTs-~l~p~~~L~eKI-----------------~l~~--~~gV~v~~GtlfE~al~ 97 (184)
.+..+.+++...-+ -+|+|=+|+=.| .+.+-.++++-- +-.| ..++++..=|++...+.
T Consensus 22 ~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~ 101 (259)
T PF00290_consen 22 DLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQ 101 (259)
T ss_dssp SHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhc
Confidence 44566666665544 889999997543 223333333322 2222 34556666588888888
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccc
Q 030024 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (184)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG~K 153 (184)
.| +++|++.|++.|++.+=|= +||.++...+.+.++++|+..++=+.-.
T Consensus 102 ~G---~e~F~~~~~~aGvdGlIip----DLP~ee~~~~~~~~~~~gl~~I~lv~p~ 150 (259)
T PF00290_consen 102 YG---IERFFKEAKEAGVDGLIIP----DLPPEESEELREAAKKHGLDLIPLVAPT 150 (259)
T ss_dssp H----HHHHHHHHHHHTEEEEEET----TSBGGGHHHHHHHHHHTT-EEEEEEETT
T ss_pred cc---hHHHHHHHHHcCCCEEEEc----CCChHHHHHHHHHHHHcCCeEEEEECCC
Confidence 86 9999999999999988774 6888999999999999999998866543
No 59
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=90.13 E-value=0.4 Score=39.89 Aligned_cols=99 Identities=23% Similarity=0.157 Sum_probs=71.6
Q ss_pred cccccEEEeeCccccccC-----------hhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 030024 51 GQFVDGLKFSGGSHSLMP-----------KPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (184)
Q Consensus 51 g~yID~lKfg~GTs~l~p-----------~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IE 119 (184)
..=+|.+-+...+|-++. -+.+++-++.++++|..++.+. |.+-...++.+.++.+.+.++|.+.|-
T Consensus 78 ~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~i~ 155 (237)
T PF00682_consen 78 EAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGC--EDASRTDPEELLELAEALAEAGADIIY 155 (237)
T ss_dssp HTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEE--TTTGGSSHHHHHHHHHHHHHHT-SEEE
T ss_pred hccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCc--cccccccHHHHHHHHHHHHHcCCeEEE
Confidence 356777777776665221 2458888999999999998763 111233445788889999999999999
Q ss_pred ecCCcccCChhHHHHHHHHHHHCCCeEccccccc
Q 030024 120 LNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (184)
Q Consensus 120 ISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG~K 153 (184)
|.|-.-.+.+++-.++|+.++++--. .++|..
T Consensus 156 l~Dt~G~~~P~~v~~lv~~~~~~~~~--~~l~~H 187 (237)
T PF00682_consen 156 LADTVGIMTPEDVAELVRALREALPD--IPLGFH 187 (237)
T ss_dssp EEETTS-S-HHHHHHHHHHHHHHSTT--SEEEEE
T ss_pred eeCccCCcCHHHHHHHHHHHHHhccC--CeEEEE
Confidence 99999999999999999999987322 455554
No 60
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=89.93 E-value=1.5 Score=37.99 Aligned_cols=103 Identities=21% Similarity=0.289 Sum_probs=67.8
Q ss_pred hhHHHHHHH-hhcccccEEEeeCccc-cccChh-----------------HHHHHHHHHHh--CCceecCc-cHHHHHHH
Q 030024 40 HNVLEDIFE-SMGQFVDGLKFSGGSH-SLMPKP-----------------FIEEVVKRAHQ--HDVYVSTG-DWAEHLIR 97 (184)
Q Consensus 40 ~~~leDlLe-~ag~yID~lKfg~GTs-~l~p~~-----------------~L~eKI~l~~~--~gV~v~~G-tlfE~al~ 97 (184)
+..+.+++. ..-.-+|+|=+|.=.| .+.+-. .+-+-++-.++ .++++. - ++..-.+.
T Consensus 23 ~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv-~m~Y~Npi~~ 101 (256)
T TIGR00262 23 LETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG-LLTYYNLIFR 101 (256)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE-EEEeccHHhh
Confidence 344444333 3344599999997221 111111 12233444443 366655 4 66666666
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcccc
Q 030024 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (184)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~Ev 150 (184)
.| +++|++.|++.|++.|=|=| +|.++..++++.++++|+.+.+=+
T Consensus 102 ~G---~e~f~~~~~~aGvdgviipD----lp~ee~~~~~~~~~~~gl~~i~lv 147 (256)
T TIGR00262 102 KG---VEEFYAKCKEVGVDGVLVAD----LPLEESGDLVEAAKKHGVKPIFLV 147 (256)
T ss_pred hh---HHHHHHHHHHcCCCEEEECC----CChHHHHHHHHHHHHCCCcEEEEE
Confidence 65 89999999999999998875 577888999999999999876533
No 61
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=89.93 E-value=0.69 Score=38.65 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcc
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (184)
.+++.++.++++||+.||+..-. ..+..++.+.+++.|+++..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~----~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY----DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc----cCCHHHHHHHHHHcCCeEEE
Confidence 78999999999999999996421 23466777788899999854
No 62
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=89.92 E-value=1.1 Score=39.41 Aligned_cols=88 Identities=17% Similarity=0.272 Sum_probs=50.5
Q ss_pred EEeeCccccccChhHHHHHHHHHHhCC--ceecCccHHHHHHHhCCchHHHHHHHHHHcCC-CEEEecCCcc--------
Q 030024 57 LKFSGGSHSLMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGF-DTIELNVGSL-------- 125 (184)
Q Consensus 57 lKfg~GTs~l~p~~~L~eKI~l~~~~g--V~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF-~~IEISdGti-------- 125 (184)
+=|+.||....|.+.|++.++.++++. +.++.+|=-+.. ++..-+.++.+++.|+ ..||+.-=|.
T Consensus 81 iyf~ggt~t~l~~~~L~~l~~~i~~~~~~~~isi~trpd~l----~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i 156 (302)
T TIGR01212 81 AYFQAYTNTYAPVEVLKEMYEQALSYDDVVGLSVGTRPDCV----PDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKI 156 (302)
T ss_pred EEEECCCcCCCCHHHHHHHHHHHhCCCCEEEEEEEecCCcC----CHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHH
Confidence 557888888888888888888777652 122222211111 0123344555556688 4566643332
Q ss_pred --cCChhHHHHHHHHHHHCCCeEcc
Q 030024 126 --EIPEETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 126 --~i~~~~r~~lI~~~~~~Gf~v~~ 148 (184)
..+.++..+.|+.+++.|++|..
T Consensus 157 ~Rg~t~~~~~~ai~~l~~~gi~v~~ 181 (302)
T TIGR01212 157 NRGHDFACYVDAVKRARKRGIKVCS 181 (302)
T ss_pred cCcChHHHHHHHHHHHHHcCCEEEE
Confidence 12455667778888888887754
No 63
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=89.74 E-value=0.72 Score=42.86 Aligned_cols=89 Identities=11% Similarity=0.143 Sum_probs=61.8
Q ss_pred cccEEEeeCccccccChhHHHHHHHHHHhC-CceecCccHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc-----
Q 030024 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL----- 125 (184)
Q Consensus 53 yID~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~v~~GtlfE~al~qg~~~-~~~yl~~~k~lGF~~IEISdGti----- 125 (184)
-|+-|=||+||-.+.+.+.|++.++.++++ ++.. -.|+.+.-+|+. -++.++.+++.||+.|.|---|.
T Consensus 114 ~i~~iy~GGGTPs~L~~~~l~~ll~~i~~~~~l~~----~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vL 189 (449)
T PRK09058 114 PIHAVYFGGGTPTALSAEDLARLITALREYLPLAP----DCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVR 189 (449)
T ss_pred eeeEEEECCCccccCCHHHHHHHHHHHHHhCCCCC----CCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHH
Confidence 488999999999999999999999999875 2211 122222222222 36788889999999887765554
Q ss_pred -----cCChhHHHHHHHHHHHCCCe
Q 030024 126 -----EIPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~Gf~ 145 (184)
.-+.++-.+.|+.+++.||.
T Consensus 190 k~lgR~~~~~~~~~~i~~l~~~g~~ 214 (449)
T PRK09058 190 RRAGRKDDREEVLARLEELVARDRA 214 (449)
T ss_pred HHhCCCCCHHHHHHHHHHHHhCCCC
Confidence 23445556778888888854
No 64
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=89.60 E-value=1.2 Score=36.66 Aligned_cols=37 Identities=22% Similarity=0.185 Sum_probs=27.1
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHH
Q 030024 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEV 75 (184)
Q Consensus 39 g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eK 75 (184)
.......+++..++++|++|.|..-..-+..+.+++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~vk~g~~l~~~~G~~~v~~i 50 (215)
T PRK13813 14 DRERALKIAEELDDYVDAIKVGWPLVLASGLGIIEEL 50 (215)
T ss_pred CHHHHHHHHHhccccCCEEEEcHHHHHhhCHHHHHHH
Confidence 5678888999999999999999755444554444443
No 65
>smart00642 Aamy Alpha-amylase domain.
Probab=89.52 E-value=1.1 Score=36.29 Aligned_cols=49 Identities=18% Similarity=0.159 Sum_probs=36.0
Q ss_pred HHHHHHHcCCCEEEecCCccc-----------------C-----ChhHHHHHHHHHHHCCCeEcccccccc
Q 030024 106 YVEDCKQVGFDTIELNVGSLE-----------------I-----PEETLLRYVRLVKSAGLKAKPKFAVMF 154 (184)
Q Consensus 106 yl~~~k~lGF~~IEISdGti~-----------------i-----~~~~r~~lI~~~~~~Gf~v~~EvG~K~ 154 (184)
-+++++++||++|.++-=+-. + +.++..++|+.+.++|++|...+=..+
T Consensus 24 ~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 24 KLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred HHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 355778899999988642211 1 237889999999999999987765443
No 66
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=89.50 E-value=1 Score=39.63 Aligned_cols=89 Identities=18% Similarity=0.051 Sum_probs=67.9
Q ss_pred ccccEEEeeCccccccCh-----------hHHHHHHHHHHhCCceec------CccHHHHHHHhCCchHHHHHHHHHHcC
Q 030024 52 QFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSAFKEYVEDCKQVG 114 (184)
Q Consensus 52 ~yID~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV~v~------~GtlfE~al~qg~~~~~~yl~~~k~lG 114 (184)
.-+|.+-+...+|-.+.. +.+++-|+.++++|+.+. .|..++.. -.++.+.++.+.+.++|
T Consensus 91 ~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~G 168 (287)
T PRK05692 91 AGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGE--VPPEAVADVAERLFALG 168 (287)
T ss_pred cCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCC--CCHHHHHHHHHHHHHcC
Confidence 356777777766644222 137889999999999874 23333332 23457888889999999
Q ss_pred CCEEEecCCcccCChhHHHHHHHHHHHC
Q 030024 115 FDTIELNVGSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 115 F~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (184)
.+.|-|.|-.--+.+.+-.++|+.++++
T Consensus 169 ~d~i~l~DT~G~~~P~~v~~lv~~l~~~ 196 (287)
T PRK05692 169 CYEISLGDTIGVGTPGQVRAVLEAVLAE 196 (287)
T ss_pred CcEEEeccccCccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999976
No 67
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=89.40 E-value=1.3 Score=29.94 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=35.2
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcc
Q 030024 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (184)
....++|++.|++.|+++|=|+|=..--.. .++.+.+++.|++|+|
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~---~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFGA---VEFYKAAKKAGIKPII 59 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccCH---HHHHHHHHHcCCeEEE
Confidence 347899999999999999999997622222 3455666778999987
No 68
>PRK01060 endonuclease IV; Provisional
Probab=89.40 E-value=1 Score=38.11 Aligned_cols=44 Identities=11% Similarity=0.277 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cc---cCChhHHHHHHHHHHHCCCe
Q 030024 102 AFKEYVEDCKQVGFDTIELNVG---SL---EIPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti---~i~~~~r~~lI~~~~~~Gf~ 145 (184)
.+++.++.++++||+.||+.-+ +. .+++++..++-+.+++.|++
T Consensus 13 ~~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~ 62 (281)
T PRK01060 13 GLEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGIS 62 (281)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCC
Confidence 3777888899999999999653 22 45666777777788899998
No 69
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=89.33 E-value=0.58 Score=39.42 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=35.1
Q ss_pred HHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEc
Q 030024 95 LIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (184)
Q Consensus 95 al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~ 147 (184)
.+.+. .+++.++.+++.||+.||+.. ... .+..++-+.+++.|+++-
T Consensus 11 ~~~~~--~l~~~l~~~a~~Gf~~VEl~~-~~~---~~~~~~~~~l~~~gl~~~ 57 (258)
T PRK09997 11 LFGEY--DFLARFEKAAQCGFRGVEFMF-PYD---YDIEELKQVLASNKLEHT 57 (258)
T ss_pred hccCC--CHHHHHHHHHHhCCCEEEEcC-CCC---CCHHHHHHHHHHcCCcEE
Confidence 34444 689999999999999999954 222 245566777789999984
No 70
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=89.21 E-value=3.1 Score=36.80 Aligned_cols=94 Identities=17% Similarity=0.218 Sum_probs=64.6
Q ss_pred ccEEEeeCccccccChhHHHHHHHHHHhCCceecC-c-cHHHHHHH---hCCchHHHHHHHHHHcCCCEEEe-----c-C
Q 030024 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-G-DWAEHLIR---NGPSAFKEYVEDCKQVGFDTIEL-----N-V 122 (184)
Q Consensus 54 ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~-G-tlfE~al~---qg~~~~~~yl~~~k~lGF~~IEI-----S-d 122 (184)
++-+=|..|.....+.+.+.+.++..++++..+.. . +..|+... .| -..++-++.+++.|++.+-- . +
T Consensus 89 ~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g-~~~~e~l~~Lk~aG~~~~~~~g~E~~~~ 167 (340)
T TIGR03699 89 GTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEG-LSLREVLERLKEAGLDSIPGGGAEILSD 167 (340)
T ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCC-CCHHHHHHHHHHcCCCcCCCCcccccCH
Confidence 66677777766667777888889988887643332 2 55665432 23 12488999999999987641 1 1
Q ss_pred Ccc------cCChhHHHHHHHHHHHCCCeEcc
Q 030024 123 GSL------EIPEETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 123 Gti------~i~~~~r~~lI~~~~~~Gf~v~~ 148 (184)
-+. ..+.+++.+.|+.+++.|+++.+
T Consensus 168 ~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~ 199 (340)
T TIGR03699 168 RVRKIISPKKISSEEWLEVMETAHKLGLPTTA 199 (340)
T ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCCCccc
Confidence 111 24788899999999999998765
No 71
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=88.78 E-value=2.9 Score=37.36 Aligned_cols=96 Identities=26% Similarity=0.332 Sum_probs=58.5
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCccccccChhHHHHHHHHHHhCCcee--cC-ccHHHHHHHhCCchHHHHHHHHHHcC
Q 030024 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV--ST-GDWAEHLIRNGPSAFKEYVEDCKQVG 114 (184)
Q Consensus 39 g~~~leDlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v--~~-GtlfE~al~qg~~~~~~yl~~~k~lG 114 (184)
....+.++++.+.+. +-.|-|.+|--.+.|. +.+.++.+++.|+.+ .+ |+++- ++.++.+++.|
T Consensus 47 ~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~--~~~il~~~~~~g~~~~i~TNG~ll~----------~~~~~~L~~~g 114 (378)
T PRK05301 47 STEEWIRVLREARALGALQLHFSGGEPLLRKD--LEELVAHARELGLYTNLITSGVGLT----------EARLAALKDAG 114 (378)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEECCccCCchh--HHHHHHHHHHcCCcEEEECCCccCC----------HHHHHHHHHcC
Confidence 455666777665443 4567788888877765 788999999988744 44 54321 23344456667
Q ss_pred CCEEEecCCccc---------C--ChhHHHHHHHHHHHCCCeE
Q 030024 115 FDTIELNVGSLE---------I--PEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 115 F~~IEISdGti~---------i--~~~~r~~lI~~~~~~Gf~v 146 (184)
++.|.||=...+ . +.+.-.+.|+.+++.|+.|
T Consensus 115 ~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v 157 (378)
T PRK05301 115 LDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPL 157 (378)
T ss_pred CCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCce
Confidence 777777644331 1 2344455666666666654
No 72
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=88.52 E-value=1.5 Score=36.45 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=36.7
Q ss_pred chHHHHHHHHHHcCCCEEEecC-CcccCChhHHHHHHHHHHHCCCeEcccccccc
Q 030024 101 SAFKEYVEDCKQVGFDTIELNV-GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMF 154 (184)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISd-Gti~i~~~~r~~lI~~~~~~Gf~v~~EvG~K~ 154 (184)
..+++.++.|+++||+.||++. +....+.++..++.+.+++.|+++..-....+
T Consensus 15 ~~l~~~l~~~~~~G~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~ 69 (274)
T COG1082 15 LPLEEILRKAAELGFDGVELSPGDLFPADYKELAELKELLADYGLEITSLAPFSN 69 (274)
T ss_pred CCHHHHHHHHHHhCCCeEecCCcccCCchhhhHHHHHHHHHHcCcEEEeecccCC
Confidence 3677888888888888888887 33333333477777888888888755444443
No 73
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=88.28 E-value=6.1 Score=34.13 Aligned_cols=104 Identities=13% Similarity=0.178 Sum_probs=71.4
Q ss_pred chhHHHHHHHhhcccccEEEe------------eCccccccChhHHHHHHHHHHhCCceecC---ccHHHHHHHhCCchH
Q 030024 39 SHNVLEDIFESMGQFVDGLKF------------SGGSHSLMPKPFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAF 103 (184)
Q Consensus 39 g~~~leDlLe~ag~yID~lKf------------g~GTs~l~p~~~L~eKI~l~~~~gV~v~~---GtlfE~al~qg~~~~ 103 (184)
.+..+..+.+...+|.|++=+ |.|++.+.+.+.+.+.++..++.+++|+- -++ .....
T Consensus 78 ~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~-------~~~~~ 150 (231)
T TIGR00736 78 DLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNC-------IPLDE 150 (231)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCC-------CcchH
Confidence 445666666666667776655 67788899999999999999998887764 122 11134
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccc
Q 030024 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFA 151 (184)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG 151 (184)
.++.+.+.+.|.+.|-|..+.-.-+..+ .++|+++++. +..+|=+|
T Consensus 151 ~~~a~~l~~aGad~i~Vd~~~~g~~~a~-~~~I~~i~~~-~~~ipIIg 196 (231)
T TIGR00736 151 LIDALNLVDDGFDGIHVDAMYPGKPYAD-MDLLKILSEE-FNDKIIIG 196 (231)
T ss_pred HHHHHHHHHcCCCEEEEeeCCCCCchhh-HHHHHHHHHh-cCCCcEEE
Confidence 5777789999999999975443222234 4889998886 32245455
No 74
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=88.14 E-value=3.8 Score=32.97 Aligned_cols=96 Identities=16% Similarity=0.101 Sum_probs=61.8
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhC--CceecCc-cHHHHHHHhCCchHHHHHHHHHHcCC
Q 030024 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGF 115 (184)
Q Consensus 39 g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~--gV~v~~G-tlfE~al~qg~~~~~~yl~~~k~lGF 115 (184)
.+....++++...++||.+|+|+-- .++.. -+-|+..+++ ++++... +.. + --..+++.+.+.|.
T Consensus 11 ~~~~~~~~~~~l~~~i~~ieig~~~--~~~~g--~~~i~~i~~~~~~~~i~~~~~v~------~--~~~~~~~~~~~aGa 78 (202)
T cd04726 11 DLEEALELAKKVPDGVDIIEAGTPL--IKSEG--MEAVRALREAFPDKIIVADLKTA------D--AGALEAEMAFKAGA 78 (202)
T ss_pred CHHHHHHHHHHhhhcCCEEEcCCHH--HHHhC--HHHHHHHHHHCCCCEEEEEEEec------c--ccHHHHHHHHhcCC
Confidence 6778889999999999999996422 22221 2344444543 6665443 322 1 11233577888999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHCCCeEccc
Q 030024 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPK 149 (184)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E 149 (184)
+.|=+..-+ +.+.-.++++.++++|.++..+
T Consensus 79 d~i~~h~~~---~~~~~~~~i~~~~~~g~~~~v~ 109 (202)
T cd04726 79 DIVTVLGAA---PLSTIKKAVKAAKKYGKEVQVD 109 (202)
T ss_pred CEEEEEeeC---CHHHHHHHHHHHHHcCCeEEEE
Confidence 988887644 2244567888888888877644
No 75
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=87.88 E-value=3.1 Score=37.26 Aligned_cols=116 Identities=18% Similarity=0.269 Sum_probs=80.6
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhccccc-EEEeeCccccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-CC-
Q 030024 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVD-GLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-GP- 100 (184)
Q Consensus 27 T~V~DkG~s~~~g~~~leDlLe~ag~yID-~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g~- 100 (184)
|.-+.-|-+..-.+..++++++..-.++. ...+ |.-.-|..+-.++++.++++|| .++.| ++=+..+.. |+
T Consensus 54 ~iyfGGGTPs~l~~~~l~~ll~~i~~~~~~~~ei---tiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~ 130 (350)
T PRK08446 54 SVFIGGGTPSTVSAKFYEPIFEIISPYLSKDCEI---TTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRI 130 (350)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhcCCCceE---EEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC
Confidence 56667676543377889999998877621 1222 2334566667899999999999 77778 676555522 31
Q ss_pred ---chHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHCCCe
Q 030024 101 ---SAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 101 ---~~~~~yl~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (184)
+.+.+-++.+++.||+.| -+-=|.-.-+.+++.+-++.+.+.|..
T Consensus 131 ~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~~l~~~ 180 (350)
T PRK08446 131 HSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAKELPIN 180 (350)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHHhcCCC
Confidence 235556778888999854 555665666788888999999988755
No 76
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=87.80 E-value=4.9 Score=38.66 Aligned_cols=103 Identities=24% Similarity=0.341 Sum_probs=70.5
Q ss_pred HHhhcccccEE--EeeCccccccChhHHHHHHHHHHhCC-ceecC--c-cHHHHHHH---------------hCCch-HH
Q 030024 47 FESMGQFVDGL--KFSGGSHSLMPKPFIEEVVKRAHQHD-VYVST--G-DWAEHLIR---------------NGPSA-FK 104 (184)
Q Consensus 47 Le~ag~yID~l--Kfg~GTs~l~p~~~L~eKI~l~~~~g-V~v~~--G-tlfE~al~---------------qg~~~-~~ 104 (184)
|+..|+.+|=+ =|.+||+.-+|.+.++.-|+.++++= -+... + .-+|-+.. -.|+. -+
T Consensus 127 l~~~g~~~~kvE~i~~GGTft~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~~ 206 (522)
T TIGR01211 127 LEQIGHPVDKVELIIMGGTFPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCRE 206 (522)
T ss_pred HHHhCCCCceEEEEEECCCcccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCCH
Confidence 44577887643 38999999999999999999998761 11111 1 00222211 12333 47
Q ss_pred HHHHHHHHcCCCEEEecCCcc----------cCChhHHHHHHHHHHHCCCeEccc
Q 030024 105 EYVEDCKQVGFDTIELNVGSL----------EIPEETLLRYVRLVKSAGLKAKPK 149 (184)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti----------~i~~~~r~~lI~~~~~~Gf~v~~E 149 (184)
+.++.++++|++.||+.-=|. .-+.++-.+.++.+++.||+|..-
T Consensus 207 e~L~~L~~~G~~rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~~ 261 (522)
T TIGR01211 207 EHIDRMLKLGATRVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVYH 261 (522)
T ss_pred HHHHHHHHcCCCEEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 899999999999999866555 234566678899999999987443
No 77
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=87.51 E-value=2 Score=38.90 Aligned_cols=88 Identities=17% Similarity=0.167 Sum_probs=69.1
Q ss_pred cccEEEeeCccccccCh-----------hHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 030024 53 FVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (184)
Q Consensus 53 yID~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEIS 121 (184)
-+|.+-+-..+|-++.+ +.+.+-|+.++++|..|..+ +|.+....++.+.++++.+.++|.+.|-+.
T Consensus 84 g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~--~eda~r~~~~~l~~~~~~~~~~g~~~i~l~ 161 (363)
T TIGR02090 84 GVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFS--AEDATRTDIDFLIKVFKRAEEAGADRINIA 161 (363)
T ss_pred CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEE--EeecCCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 37778887776655321 34668889999999988754 234444555678888888999999999999
Q ss_pred CCcccCChhHHHHHHHHHHHC
Q 030024 122 VGSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 122 dGti~i~~~~r~~lI~~~~~~ 142 (184)
|-.-.+.+++-.++|+.++++
T Consensus 162 DT~G~~~P~~v~~li~~l~~~ 182 (363)
T TIGR02090 162 DTVGVLTPQKMEELIKKLKEN 182 (363)
T ss_pred CCCCccCHHHHHHHHHHHhcc
Confidence 999999999999999999876
No 78
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=87.45 E-value=1.9 Score=37.99 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=53.7
Q ss_pred chhHHHHHHHhhcccccEEEe---eCcccc----ccChhHHHHHHHHHHhCCceecC-cc-HHHHHHHhCCchHHHHHHH
Q 030024 39 SHNVLEDIFESMGQFVDGLKF---SGGSHS----LMPKPFIEEVVKRAHQHDVYVST-GD-WAEHLIRNGPSAFKEYVED 109 (184)
Q Consensus 39 g~~~leDlLe~ag~yID~lKf---g~GTs~----l~p~~~L~eKI~l~~~~gV~v~~-Gt-lfE~al~qg~~~~~~yl~~ 109 (184)
.+..++..++..+.|---.|+ ..-|-. +|+.+.|++..++||+|||+++. |. |+|.+...+ ..+.++.
T Consensus 107 ~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~-~~~~e~~-- 183 (290)
T PF01212_consen 107 TPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALG-VSLAEIA-- 183 (290)
T ss_dssp -HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHH-HHHHHHH--
T ss_pred CHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhccc-ccHHHHh--
Confidence 788999999998864444443 332222 78888999999999999999999 74 999885554 2344444
Q ss_pred HHHcCCCEEEecC
Q 030024 110 CKQVGFDTIELNV 122 (184)
Q Consensus 110 ~k~lGF~~IEISd 122 (184)
-+||.+=||-
T Consensus 184 ---~~~D~v~~~~ 193 (290)
T PF01212_consen 184 ---AGADSVSFGG 193 (290)
T ss_dssp ---TTSSEEEEET
T ss_pred ---hhCCEEEEEE
Confidence 7899999884
No 79
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=87.41 E-value=5.2 Score=33.32 Aligned_cols=91 Identities=19% Similarity=0.274 Sum_probs=61.8
Q ss_pred HHHHHhhcccccEEEeeCcccc----ccChhHHHHHHHHHHhCC--ceecCccHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 030024 44 EDIFESMGQFVDGLKFSGGSHS----LMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (184)
Q Consensus 44 eDlLe~ag~yID~lKfg~GTs~----l~p~~~L~eKI~l~~~~g--V~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~ 117 (184)
-+.|..+| ||.+=+|++... +++. ..+.++.+++.+ +.+.. +.++ . .+.++.+++.|++.
T Consensus 25 ~~~L~~~G--V~~IEvg~~~~~~~~p~~~~--~~~~i~~l~~~~~~~~~~~-------l~~~--~-~~~i~~a~~~g~~~ 90 (265)
T cd03174 25 AEALDEAG--VDSIEVGSGASPKAVPQMED--DWEVLRAIRKLVPNVKLQA-------LVRN--R-EKGIERALEAGVDE 90 (265)
T ss_pred HHHHHHcC--CCEEEeccCcCccccccCCC--HHHHHHHHHhccCCcEEEE-------EccC--c-hhhHHHHHhCCcCE
Confidence 34444556 999999999886 4443 556666666655 54421 1122 1 66788889999999
Q ss_pred EEecCCcccC------------ChhHHHHHHHHHHHCCCeEcc
Q 030024 118 IELNVGSLEI------------PEETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 118 IEISdGti~i------------~~~~r~~lI~~~~~~Gf~v~~ 148 (184)
|-|+....+. ..+.-.+.|+.+++.|+.|..
T Consensus 91 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~ 133 (265)
T cd03174 91 VRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEG 133 (265)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 9999876531 345566889999999988744
No 80
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=87.28 E-value=2 Score=38.12 Aligned_cols=74 Identities=8% Similarity=0.101 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHhCCceec--CccHHHHHHHhCCc----hHHHHHHHHHHcCCCEEEecCCcccCC----hhHHHHHHHH
Q 030024 69 KPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPS----AFKEYVEDCKQVGFDTIELNVGSLEIP----EETLLRYVRL 138 (184)
Q Consensus 69 ~~~L~eKI~l~~~~gV~v~--~GtlfE~al~qg~~----~~~~yl~~~k~lGF~~IEISdGti~i~----~~~r~~lI~~ 138 (184)
...+...|.-+|+.|++|. .|||-...+.+... -++.|.+.++..||+.|.|.==.-... .+.+.++|+.
T Consensus 53 ~~~~~~~i~~lk~~G~kViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~ 132 (294)
T cd06543 53 GGWIKSDIAALRAAGGDVIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALAL 132 (294)
T ss_pred chhHHHHHHHHHHcCCeEEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHH
Confidence 4568889999999998665 48776654443322 266788899999999999843222222 2678889998
Q ss_pred HHHC
Q 030024 139 VKSA 142 (184)
Q Consensus 139 ~~~~ 142 (184)
++++
T Consensus 133 Lq~~ 136 (294)
T cd06543 133 LQKE 136 (294)
T ss_pred HHHH
Confidence 8887
No 81
>PRK05985 cytosine deaminase; Provisional
Probab=87.19 E-value=6.8 Score=34.99 Aligned_cols=95 Identities=16% Similarity=0.166 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHHhCCceecC--ccHHHHHHHhCCchHHHHHHHHHHcCCC-EEEecCCc--ccCChhHHHHHHHHHHHCC
Q 030024 69 KPFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFD-TIELNVGS--LEIPEETLLRYVRLVKSAG 143 (184)
Q Consensus 69 ~~~L~eKI~l~~~~gV~v~~--GtlfE~al~qg~~~~~~yl~~~k~lGF~-~IEISdGt--i~i~~~~r~~lI~~~~~~G 143 (184)
++.|++.+++++++|+++.. ...-+.. . ..++++++.++++|+. .+-++=.+ -.++++++.++|+++++.|
T Consensus 190 ~~~l~~~~~~A~~~g~~i~~Hv~e~~d~~--~--~~~~~~~e~~~~~g~~~~~~i~H~~~l~~~~~~~~~~~i~~lae~g 265 (391)
T PRK05985 190 EGQLDIVFGLAERHGVGIDIHLHEPGELG--A--FQLERIAARTRALGMQGRVAVSHAFCLGDLPEREVDRLAERLAEAG 265 (391)
T ss_pred HHHHHHHHHHHHHhCCCcEEeeCCCCCcc--H--HHHHHHHHHHHHhCCCCCEehhhhhhhhcCCHHHHHHHHHHHHHcC
Confidence 36788999999999987633 2111111 1 1455677777888885 23333332 2567777789999999999
Q ss_pred CeEccccccccCCCCCCchhhhhccc
Q 030024 144 LKAKPKFAVMFNKSDIPSDRDRAFGA 169 (184)
Q Consensus 144 f~v~~EvG~K~~~~~~~~~~~~a~ga 169 (184)
..|...... ...-.++..+.+.|.
T Consensus 266 ~~v~~~~~~--~~~~~~~~~l~~~Gv 289 (391)
T PRK05985 266 VAIMTNAPG--SVPVPPVAALRAAGV 289 (391)
T ss_pred CeEEEeCCC--CCCCCCHHHHHHCCC
Confidence 998653111 222345555555544
No 82
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=87.13 E-value=16 Score=31.07 Aligned_cols=111 Identities=17% Similarity=0.259 Sum_probs=68.6
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccc-cChhHHHHHHHHHHhCC-------------ceecCccHHHHHHHhCCchHH
Q 030024 39 SHNVLEDIFESMGQFVDGLKFSGGSHSL-MPKPFIEEVVKRAHQHD-------------VYVSTGDWAEHLIRNGPSAFK 104 (184)
Q Consensus 39 g~~~leDlLe~ag~yID~lKfg~GTs~l-~p~~~L~eKI~l~~~~g-------------V~v~~GtlfE~al~qg~~~~~ 104 (184)
.+..+.++++..-+-+|.+=+|.=.+-. .+-..+++..+.+.++| +++..=+.+-. +.. ..+
T Consensus 16 ~~~~~~~~~~~l~~~ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~-~~~---~~~ 91 (244)
T PRK13125 16 NVESFKEFIIGLVELVDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLED-YVD---SLD 91 (244)
T ss_pred CHHHHHHHHHHHHhhCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecch-hhh---CHH
Confidence 3344455555432339999999855544 23445555544444333 33211111122 122 588
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcccccccc
Q 030024 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMF 154 (184)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG~K~ 154 (184)
+|++.|++.|.+.|=|=|-.++- .++..++++.++++|+++..++.-..
T Consensus 92 ~~i~~~~~~Gadgvii~dlp~e~-~~~~~~~~~~~~~~Gl~~~~~v~p~T 140 (244)
T PRK13125 92 NFLNMARDVGADGVLFPDLLIDY-PDDLEKYVEIIKNKGLKPVFFTSPKF 140 (244)
T ss_pred HHHHHHHHcCCCEEEECCCCCCc-HHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 99999999999999884433321 35667999999999999999887654
No 83
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=86.92 E-value=2 Score=41.13 Aligned_cols=119 Identities=13% Similarity=0.061 Sum_probs=81.9
Q ss_pred CCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChh-----------HHHHHHHHHHhCCceecC
Q 030024 20 KPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVST 88 (184)
Q Consensus 20 KPR~~GlT~V~DkG~s~~~g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~-----------~L~eKI~l~~~~gV~v~~ 88 (184)
+++-.++++.+.+++... --..++.+++ .-+|.+-+...||-++-+. .+++-++.++++|..|..
T Consensus 69 ~~~i~~~~~~~~~~i~~~-~d~~~e~~~~---~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~ 144 (524)
T PRK12344 69 HAKLAAFGSTRRAGVSAE-EDPNLQALLD---AGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIF 144 (524)
T ss_pred CcEEEEEeeccccCCCcc-cHHHHHHHHh---CCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 345555555555555221 1123333333 3467788887777554332 355889999999999887
Q ss_pred cc-HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 030024 89 GD-WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 89 Gt-lfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (184)
+. ++.-+....++.+-++++.+.+.|.+.|-|.|-.--+.+.+-.++|+.++++
T Consensus 145 ~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~ 199 (524)
T PRK12344 145 DAEHFFDGYKANPEYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAA 199 (524)
T ss_pred ccccccccccCCHHHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHh
Confidence 63 3323334445567778888899999999999999999999999999999887
No 84
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=86.84 E-value=2.7 Score=36.53 Aligned_cols=89 Identities=13% Similarity=0.208 Sum_probs=53.6
Q ss_pred HHHhhcccccEEEeeCccc----cccChhHHHHHHHHHHhCCceecC--ccH---------HHHHHHhCCc----hHHHH
Q 030024 46 IFESMGQFVDGLKFSGGSH----SLMPKPFIEEVVKRAHQHDVYVST--GDW---------AEHLIRNGPS----AFKEY 106 (184)
Q Consensus 46 lLe~ag~yID~lKfg~GTs----~l~p~~~L~eKI~l~~~~gV~v~~--Gtl---------fE~al~qg~~----~~~~y 106 (184)
.++..++.++.|=.-|-.. .+.+. ...+.++.+|++||++.+ |+| +..++. ++. -++..
T Consensus 18 ~~~~~~~~lt~v~p~w~~~~~~g~~~~~-~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~-~~~~r~~fi~~i 95 (313)
T cd02874 18 SLRANAPYLTYIAPFWYGVDADGTLTGL-PDERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLS-NPEARQRLINNI 95 (313)
T ss_pred HHHHhcCCCCEEEEEEEEEcCCCCCCCC-CCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhc-CHHHHHHHHHHH
Confidence 4445556666654333210 12222 246889999999999987 544 344432 222 46788
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHH
Q 030024 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRL 138 (184)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~ 138 (184)
++.+++.|||.|+|.=-. ++.+++..++..
T Consensus 96 v~~l~~~~~DGidiDwE~--~~~~d~~~~~~f 125 (313)
T cd02874 96 LALAKKYGYDGVNIDFEN--VPPEDREAYTQF 125 (313)
T ss_pred HHHHHHhCCCcEEEeccc--CCHHHHHHHHHH
Confidence 888999999999996433 344555544433
No 85
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=86.68 E-value=7.4 Score=35.27 Aligned_cols=77 Identities=17% Similarity=0.149 Sum_probs=59.4
Q ss_pred ceeEecCCCCCC-cchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecC---ccHHHHHHHhCCc
Q 030024 26 VTEMRSPHYTLS-SSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPS 101 (184)
Q Consensus 26 lT~V~DkG~s~~-~g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~---GtlfE~al~qg~~ 101 (184)
.|++-+||..+. .-.++|.+.+...-.=-|++=+++---.=+|.++..+.++++|+.|++|.. |-.+..++.++|.
T Consensus 101 ~Tein~~Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg~~L~~~L~~~P~ 180 (310)
T COG1105 101 ETEINFPGPEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSGEALLAALEAKPW 180 (310)
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECChHHHHHHHccCCc
Confidence 899999998774 233444555555555679999998777778999999999999999998875 5577777777664
Q ss_pred h
Q 030024 102 A 102 (184)
Q Consensus 102 ~ 102 (184)
-
T Consensus 181 l 181 (310)
T COG1105 181 L 181 (310)
T ss_pred E
Confidence 3
No 86
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=86.28 E-value=1.7 Score=37.78 Aligned_cols=106 Identities=12% Similarity=0.102 Sum_probs=74.2
Q ss_pred hHHHHHHHhhcccccEEEeeCccccc-----------cChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHH
Q 030024 41 NVLEDIFESMGQFVDGLKFSGGSHSL-----------MPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVED 109 (184)
Q Consensus 41 ~~leDlLe~ag~yID~lKfg~GTs~l-----------~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~ 109 (184)
..++..+++ =+|.+-+...+|-. ..-+.+++-|+.++++|+.|+.+- |.+..-.++.+.++++.
T Consensus 75 ~di~~a~~~---g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~--eda~r~~~~~l~~~~~~ 149 (262)
T cd07948 75 DDARIAVET---GVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS--EDSFRSDLVDLLRVYRA 149 (262)
T ss_pred HHHHHHHHc---CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE--EeeCCCCHHHHHHHHHH
Confidence 345555554 45666666544421 112335666799999999887642 23333344578889999
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcccccccc
Q 030024 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMF 154 (184)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG~K~ 154 (184)
+.++|.+.|-+.|-.--+.+++-.++++.+++. +. .+++..+
T Consensus 150 ~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~-~~--~~i~~H~ 191 (262)
T cd07948 150 VDKLGVNRVGIADTVGIATPRQVYELVRTLRGV-VS--CDIEFHG 191 (262)
T ss_pred HHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHh-cC--CeEEEEE
Confidence 999999999999999999999999999999886 33 4556554
No 87
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=86.16 E-value=8 Score=33.91 Aligned_cols=99 Identities=15% Similarity=0.284 Sum_probs=65.1
Q ss_pred ccEEEeeCccccccChhHHHHHHHHHHhCCc--eecCccHHHHHHH---hCCchHHHHHHHHHHcCCCEE-EecCCc---
Q 030024 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTGDWAEHLIR---NGPSAFKEYVEDCKQVGFDTI-ELNVGS--- 124 (184)
Q Consensus 54 ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV--~v~~GtlfE~al~---qg~~~~~~yl~~~k~lGF~~I-EISdGt--- 124 (184)
++-+-|-.|.....+.+.+.+.++..++... .++.=+-.|+... .| -..++.++..|+.|.+.+ .++.-+
T Consensus 53 ~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g-~~~~e~l~~LkeAGl~~i~~~g~E~l~~ 131 (309)
T TIGR00423 53 ATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEG-LSIEEVLKRLKKAGLDSMPGTGAEILDD 131 (309)
T ss_pred CCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcC-CCHHHHHHHHHHcCCCcCCCCcchhcCH
Confidence 4556666666665677778888988888753 3332255665432 22 135888999999999877 232111
Q ss_pred -----c---cCChhHHHHHHHHHHHCCCeEccccccccC
Q 030024 125 -----L---EIPEETLLRYVRLVKSAGLKAKPKFAVMFN 155 (184)
Q Consensus 125 -----i---~i~~~~r~~lI~~~~~~Gf~v~~EvG~K~~ 155 (184)
+ .++.+++.+.|+.+++.|+++.. |.-.+
T Consensus 132 ~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s--~~iiG 168 (309)
T TIGR00423 132 SVRRKICPNKLSSDEWLEVIKTAHRLGIPTTA--TMMFG 168 (309)
T ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCCCcee--eEEec
Confidence 1 35778889999999999988864 44444
No 88
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=86.13 E-value=4.7 Score=37.44 Aligned_cols=120 Identities=13% Similarity=0.110 Sum_probs=82.4
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C---
Q 030024 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G--- 99 (184)
Q Consensus 27 T~V~DkG~s~~~g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g--- 99 (184)
+..+.=|-+..-.+..++++++..-.++++.+-.-=|.-.-|..+-++++++++++|+ .++.| ++-+..+.. |
T Consensus 106 ~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~ 185 (453)
T PRK13347 106 QLHWGGGTPTILNPDQFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQ 185 (453)
T ss_pred EEEEcCcccccCCHHHHHHHHHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCC
Confidence 4445555443226788999999888776532211112234566666899999999999 77778 676655532 1
Q ss_pred -CchHHHHHHHHHHcCCCE--EEecCCcccCChhHHHHHHHHHHHCCCeE
Q 030024 100 -PSAFKEYVEDCKQVGFDT--IELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 100 -~~~~~~yl~~~k~lGF~~--IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (184)
.+.+.+-++.+++.||+. +-+.-|.=.-+.++..+.++.+.+.|..-
T Consensus 186 ~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~ 235 (453)
T PRK13347 186 PEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIALSPDR 235 (453)
T ss_pred CHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCE
Confidence 124667788889999984 55667777778888989999999988653
No 89
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=86.01 E-value=5.3 Score=36.54 Aligned_cols=119 Identities=18% Similarity=0.097 Sum_probs=80.2
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C---
Q 030024 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G--- 99 (184)
Q Consensus 27 T~V~DkG~s~~~g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g--- 99 (184)
|.-++-|-+....+..++.+++..-.++++.+-.-=|.-.-|..+=.++++.++++|| .++.| ++-+..+.. |
T Consensus 69 ~iy~GGGTps~l~~~~l~~ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~ 148 (400)
T PRK07379 69 TVFFGGGTPSLLSVEQLERILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSH 148 (400)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCC
Confidence 4445545333227789999999988876543221122234566667899999999999 78888 677777643 2
Q ss_pred -CchHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHCCCe
Q 030024 100 -PSAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 100 -~~~~~~yl~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (184)
.+.+.+-++.+++.||+.| -+--|.=.-+.+++.+-++.+.+.+..
T Consensus 149 ~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~ 197 (400)
T PRK07379 149 RVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQASLEAAIALNPT 197 (400)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHcCCCC
Confidence 1246667778899999854 445555555677787888888887654
No 90
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=85.78 E-value=0.51 Score=36.97 Aligned_cols=42 Identities=26% Similarity=0.385 Sum_probs=34.0
Q ss_pred HHHHHHcCCCEEEecCCcccCCh---hHHHHHHHHHHHCCCeEcc
Q 030024 107 VEDCKQVGFDTIELNVGSLEIPE---ETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~---~~r~~lI~~~~~~Gf~v~~ 148 (184)
|+.++++||+.||++-....... ++..++.+.+++.|+++..
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEE
T ss_pred ChHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEE
Confidence 57899999999999877765554 5777899999999999643
No 91
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=85.77 E-value=2.1 Score=38.27 Aligned_cols=52 Identities=17% Similarity=0.374 Sum_probs=37.3
Q ss_pred chHHHHHHHHHHcCCCEEEe---------cCCcccCC-hhHHHHHHHHHHHCCCeEcccccc
Q 030024 101 SAFKEYVEDCKQVGFDTIEL---------NVGSLEIP-EETLLRYVRLVKSAGLKAKPKFAV 152 (184)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEI---------SdGti~i~-~~~r~~lI~~~~~~Gf~v~~EvG~ 152 (184)
+...+-|+.+|++||++|++ ..|..+.+ ..+..++|+.|+++||.|+--.|-
T Consensus 24 ~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGp 85 (319)
T PF01301_consen 24 EYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGP 85 (319)
T ss_dssp GGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES
T ss_pred hHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEecccc
Confidence 46778888999999999987 45777776 456789999999999999766553
No 92
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=85.44 E-value=1.9 Score=39.44 Aligned_cols=107 Identities=18% Similarity=0.100 Sum_probs=74.4
Q ss_pred hHHHHHHHhhcccccEEEeeCccccc--------cChhH---HHHHHHHHHhCCceec------CccHHHHHHHhCCchH
Q 030024 41 NVLEDIFESMGQFVDGLKFSGGSHSL--------MPKPF---IEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSAF 103 (184)
Q Consensus 41 ~~leDlLe~ag~yID~lKfg~GTs~l--------~p~~~---L~eKI~l~~~~gV~v~------~GtlfE~al~qg~~~~ 103 (184)
..++..+++- +|.+-+...+|-. .+++. +++.|++++++|..|. .|..++.. -.++.+
T Consensus 125 ~die~A~~~g---~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r--~~~~~l 199 (347)
T PLN02746 125 KGFEAAIAAG---AKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGP--VPPSKV 199 (347)
T ss_pred HHHHHHHHcC---cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCC--CCHHHH
Confidence 3455555543 5666666555422 23333 4489999999999883 34322222 345578
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcccccccc
Q 030024 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMF 154 (184)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG~K~ 154 (184)
.++.+.+.+.|.+.|-|.|-.--+.+.+-.++++.+++. +. .++++..+
T Consensus 200 ~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~-~~-~~~i~~H~ 248 (347)
T PLN02746 200 AYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAV-VP-VDKLAVHF 248 (347)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHh-CC-CCeEEEEE
Confidence 889999999999999999999999999999999999876 42 23466654
No 93
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=85.38 E-value=1.9 Score=37.81 Aligned_cols=97 Identities=15% Similarity=0.111 Sum_probs=69.9
Q ss_pred HHHHHHHhhcccccEEEeeCccccccCh--------h---HHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHH
Q 030024 42 VLEDIFESMGQFVDGLKFSGGSHSLMPK--------P---FIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVE 108 (184)
Q Consensus 42 ~leDlLe~ag~yID~lKfg~GTs~l~p~--------~---~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~~yl~ 108 (184)
.++..+++- +|.+.+...+|-.+.+ + .+++-|+.++++|..|..+ +|.-. +.-.++.+.++++
T Consensus 79 ~~~~A~~~g---~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~-~r~~~~~~~~~~~ 154 (280)
T cd07945 79 SVDWIKSAG---AKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNG-MRDSPDYVFQLVD 154 (280)
T ss_pred HHHHHHHCC---CCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCC-CcCCHHHHHHHHH
Confidence 344444443 4556666655544332 2 2566699999999988775 43211 1335568889999
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 030024 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (184)
.+.++|.+.|-|.|-.--+.+.+-.++++.+++.
T Consensus 155 ~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~ 188 (280)
T cd07945 155 FLSDLPIKRIMLPDTLGILSPFETYTYISDMVKR 188 (280)
T ss_pred HHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999875
No 94
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=85.18 E-value=2.7 Score=36.66 Aligned_cols=97 Identities=19% Similarity=0.109 Sum_probs=70.0
Q ss_pred hHHHHHHHhhcccccEEEeeCccccccCh-----------hHHHHHHHHHHhCCceec------CccHHHHHHHhCCchH
Q 030024 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSAF 103 (184)
Q Consensus 41 ~~leDlLe~ag~yID~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV~v~------~GtlfE~al~qg~~~~ 103 (184)
+.++..+++- +|.+-+...+|-.+.. +.+.+.++.++++|..+. .|..++--. .++.+
T Consensus 77 ~dv~~A~~~g---~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~--~~~~~ 151 (274)
T cd07938 77 RGAERALAAG---VDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEV--PPERV 151 (274)
T ss_pred HHHHHHHHcC---cCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCC--CHHHH
Confidence 3455555543 6777777766643221 446777999999999883 232222111 23467
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 030024 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (184)
.++.+.+.++|.+.|-+.|-.-.+.+.+-.++|+.++++
T Consensus 152 ~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~ 190 (274)
T cd07938 152 AEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLER 190 (274)
T ss_pred HHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHH
Confidence 788888999999999999999999999999999999987
No 95
>PRK05660 HemN family oxidoreductase; Provisional
Probab=85.16 E-value=5.9 Score=35.90 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=83.3
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C---
Q 030024 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G--- 99 (184)
Q Consensus 27 T~V~DkG~s~~~g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g--- 99 (184)
|.-+.=|=|..-....++++++....+.++.+-.==|.-.-|..+-+++++.++++|| .++.| ++-+..+.. |
T Consensus 61 ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~ 140 (378)
T PRK05660 61 SIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIH 140 (378)
T ss_pred EEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCC
Confidence 5555555444325788999999988876543211112233466777899999999999 77778 666655532 2
Q ss_pred -CchHHHHHHHHHHcCCC--EEEecCCcccCChhHHHHHHHHHHHCCCe
Q 030024 100 -PSAFKEYVEDCKQVGFD--TIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 100 -~~~~~~yl~~~k~lGF~--~IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (184)
.+.+.+-++.+++.||+ .+-+.-|.-.-+.+++.+-++.+.+.|..
T Consensus 141 ~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~~~l~~~~~l~p~ 189 (378)
T PRK05660 141 GPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEALDDLRQAIALNPP 189 (378)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhcCCC
Confidence 12355567788999997 47778888888899999999999998743
No 96
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=85.04 E-value=11 Score=28.36 Aligned_cols=95 Identities=21% Similarity=0.365 Sum_probs=68.9
Q ss_pred HHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhC--Ccee--cC-ccHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 030024 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYV--ST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (184)
Q Consensus 43 leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~--gV~v--~~-GtlfE~al~qg~~~~~~yl~~~k~lGF~~ 117 (184)
.+.+.+.....+..+=|++|...+.+ .+.+.++.+++. ++.+ .+ |..+ + ++.++.+.+.|++.
T Consensus 34 ~~~~~~~~~~~~~~i~~~ggep~~~~--~~~~~i~~~~~~~~~~~~~i~T~~~~~------~----~~~~~~l~~~g~~~ 101 (204)
T cd01335 34 LDIVLEAKERGVEVVILTGGEPLLYP--ELAELLRRLKKELPGFEISIETNGTLL------T----EELLKELKELGLDG 101 (204)
T ss_pred HHHHHHHHhcCceEEEEeCCcCCccH--hHHHHHHHHHhhCCCceEEEEcCcccC------C----HHHHHHHHhCCCce
Confidence 34444556677888889999988888 488889888888 5544 33 2222 1 56777788889999
Q ss_pred EEecCCccc-----------CChhHHHHHHHHHHHCCCeEccc
Q 030024 118 IELNVGSLE-----------IPEETLLRYVRLVKSAGLKAKPK 149 (184)
Q Consensus 118 IEISdGti~-----------i~~~~r~~lI~~~~~~Gf~v~~E 149 (184)
|.+|--+.+ .+.++..+.|+++++.|..+...
T Consensus 102 i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 144 (204)
T cd01335 102 VGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTT 144 (204)
T ss_pred EEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEE
Confidence 999877653 34477888999999987776543
No 97
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=85.01 E-value=5.9 Score=34.69 Aligned_cols=97 Identities=23% Similarity=0.265 Sum_probs=64.1
Q ss_pred HHHHHHHhhcccccEEEeeCccccccChhH-------HHHHHHHHHh--CCceecCccHHHHHHHhCCchHH--HHHHHH
Q 030024 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPF-------IEEVVKRAHQ--HDVYVSTGDWAEHLIRNGPSAFK--EYVEDC 110 (184)
Q Consensus 42 ~leDlLe~ag~yID~lKfg~GTs~l~p~~~-------L~eKI~l~~~--~gV~v~~GtlfE~al~qg~~~~~--~yl~~~ 110 (184)
.....+..+..=+||+|+|. ++... ++.-+...++ .+..+..-.|.... .-| .++ +..+.+
T Consensus 69 ~~~aa~~~a~~GvdyvKvGl-----~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~-r~~--~~~p~~l~~~a 140 (235)
T PF04476_consen 69 ASLAALGAAATGVDYVKVGL-----FGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQ-RVG--SISPLDLPEIA 140 (235)
T ss_pred HHHHHHHHHhcCCCEEEEec-----CCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchh-hhc--CCCHHHHHHHH
Confidence 33456666666799999995 32222 2333333333 34555555566643 223 343 557889
Q ss_pred HHcCCCEEEecCC-------cccCChhHHHHHHHHHHHCCCeE
Q 030024 111 KQVGFDTIELNVG-------SLEIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 111 k~lGF~~IEISdG-------ti~i~~~~r~~lI~~~~~~Gf~v 146 (184)
++.||+.+=|... +--++.++..++++.++++|+.+
T Consensus 141 ~~aG~~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 141 AEAGFDGVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred HHcCCCEEEEecccCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 9999999988643 23689999999999999999976
No 98
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=84.73 E-value=8.8 Score=31.93 Aligned_cols=93 Identities=12% Similarity=0.091 Sum_probs=49.4
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 030024 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (184)
Q Consensus 39 g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G-tlfE~al~qg~~~~~~yl~~~k~lGF~~ 117 (184)
.+....++++..++++|++|+|+--..-+..+ -|+..++.+..+..- =+..+- +.+..|.+.+.++|.|+
T Consensus 9 ~~~~a~~~~~~~~~~v~~iKig~~l~~~~G~~----~v~~l~~~~~~v~lD~K~~Dig-----~t~~~~~~~~~~~gad~ 79 (213)
T TIGR01740 9 TKDEALDLADSLGPEIEVIKVGIDLLLDGGDK----IIDELAKLNKLIFLDLKFADIP-----NTVKLQYESKIKQGADM 79 (213)
T ss_pred CHHHHHHHHHhcCCcCcEEEECHHHHHhcCHH----HHHHHHHcCCCEEEEEeecchH-----HHHHHHHHHHHhcCCCE
Confidence 56678889999999999999998655544443 344444544433221 011111 12333444445556666
Q ss_pred EEecCCcccCChhHHHHHHHHHHHCC
Q 030024 118 IELNVGSLEIPEETLLRYVRLVKSAG 143 (184)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G 143 (184)
|-|+- ....+....+++.+++.|
T Consensus 80 vTvh~---~~g~~~l~~~~~~~~~~~ 102 (213)
T TIGR01740 80 VNVHG---VAGSESVEAAKEAASEGG 102 (213)
T ss_pred EEEcC---CCCHHHHHHHHHHhhcCC
Confidence 55553 222333344444444433
No 99
>PRK09061 D-glutamate deacylase; Validated
Probab=84.57 E-value=7.2 Score=36.85 Aligned_cols=106 Identities=14% Similarity=0.114 Sum_probs=70.1
Q ss_pred HHHHHH---hhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecC-c---cHHH-HHHHhCCchHHHHHHHHHHcC
Q 030024 43 LEDIFE---SMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-G---DWAE-HLIRNGPSAFKEYVEDCKQVG 114 (184)
Q Consensus 43 leDlLe---~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~-G---tlfE-~al~qg~~~~~~yl~~~k~lG 114 (184)
++++++ .+| ++++|.+-.-..-.+.+.|.+-.+.+++||..+.. - ++.. ..... .+++.++.+++.|
T Consensus 171 m~~ll~~al~~G--a~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~~~~~~e~~---av~~~i~lA~~~G 245 (509)
T PRK09061 171 ILELLEQGLDEG--ALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLSNVDPRSSVD---AYQELIAAAAETG 245 (509)
T ss_pred HHHHHHHHHHCC--CCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCcccCCchhHHH---HHHHHHHHHHHhC
Confidence 455554 234 58888753222234777899999999999998865 1 2321 11111 5788899999999
Q ss_pred CCEEEecCCcc--cCChhHHHHHHHHHHHCCCeEcccccccc
Q 030024 115 FDTIELNVGSL--EIPEETLLRYVRLVKSAGLKAKPKFAVMF 154 (184)
Q Consensus 115 F~~IEISdGti--~i~~~~r~~lI~~~~~~Gf~v~~EvG~K~ 154 (184)
+. +-||--+. ..+.++-+++|+++++.|..|..|+--..
T Consensus 246 ~r-v~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 246 AH-MHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred CC-EEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 75 44442111 12446668999999999999999986544
No 100
>PRK15452 putative protease; Provisional
Probab=84.55 E-value=9.3 Score=35.97 Aligned_cols=78 Identities=10% Similarity=-0.026 Sum_probs=53.8
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccc------ccChhHHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHH
Q 030024 39 SHNVLEDIFESMGQFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDC 110 (184)
Q Consensus 39 g~~~leDlLe~ag~yID~lKfg~GTs~------l~p~~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~~yl~~~ 110 (184)
.+..++..++.- .|-|=+|..... .+..+.|++-++++|++|+.+|.- ++..-- ... .+.+|++.+
T Consensus 12 ~~e~l~aAi~~G---ADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~-el~--~~~~~l~~l 85 (443)
T PRK15452 12 TLKNMRYAFAYG---ADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNA-KLK--TFIRDLEPV 85 (443)
T ss_pred CHHHHHHHHHCC---CCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHH-HHH--HHHHHHHHH
Confidence 555666666554 455555543222 334466999999999999988864 433211 122 688889999
Q ss_pred HHcCCCEEEecC
Q 030024 111 KQVGFDTIELNV 122 (184)
Q Consensus 111 k~lGF~~IEISd 122 (184)
.++|+|+|=|+|
T Consensus 86 ~~~gvDgvIV~d 97 (443)
T PRK15452 86 IAMKPDALIMSD 97 (443)
T ss_pred HhCCCCEEEEcC
Confidence 999999999998
No 101
>PRK08445 hypothetical protein; Provisional
Probab=84.54 E-value=13 Score=33.51 Aligned_cols=98 Identities=16% Similarity=0.227 Sum_probs=69.5
Q ss_pred cccccEEEeeCccccccChhHHHHHHHHHHhCC--ceecC--ccHHHHHHHhCCchHHHHHHHHHHcCCC-----EEEec
Q 030024 51 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD--VYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFD-----TIELN 121 (184)
Q Consensus 51 g~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~g--V~v~~--GtlfE~al~qg~~~~~~yl~~~k~lGF~-----~IEIS 121 (184)
....+-+=+.+|-...++.+.+.+.++..+++. +.+.. -+=..++...+.-..++-++.+|+.|++ .+|++
T Consensus 87 ~~g~~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~~~~g~glE~~ 166 (348)
T PRK08445 87 AIGGTQILFQGGVHPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKGLSSIPGAGAEIL 166 (348)
T ss_pred HcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCCCCCCCceeeC
Confidence 344667777778888888888999999888875 44432 1223334333322458999999999997 27866
Q ss_pred CCc----c---cCChhHHHHHHHHHHHCCCeEcc
Q 030024 122 VGS----L---EIPEETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 122 dGt----i---~i~~~~r~~lI~~~~~~Gf~v~~ 148 (184)
+-. + ..+.++|.+.|+.+++.|+++-+
T Consensus 167 ~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~s 200 (348)
T PRK08445 167 SDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTA 200 (348)
T ss_pred CHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeee
Confidence 542 2 57788999999999999999866
No 102
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=84.50 E-value=11 Score=34.37 Aligned_cols=44 Identities=18% Similarity=0.321 Sum_probs=30.2
Q ss_pred chhHHHHHHHhh-cccccEEEeeCccccccChhHHHHHHHHHHhC-Cc
Q 030024 39 SHNVLEDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DV 84 (184)
Q Consensus 39 g~~~leDlLe~a-g~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV 84 (184)
.+.++.++++.+ ..-|..|.|.+|--.+.+. |.+.++.+++. |+
T Consensus 91 s~eei~~~i~~~~~~Gv~~I~~tGGEPllr~d--l~eli~~l~~~~gi 136 (373)
T PLN02951 91 SQDEIVRLAGLFVAAGVDKIRLTGGEPTLRKD--IEDICLQLSSLKGL 136 (373)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCcchhh--HHHHHHHHHhcCCC
Confidence 445666665543 2346778899888777664 88888888886 65
No 103
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=84.39 E-value=5.5 Score=35.32 Aligned_cols=100 Identities=12% Similarity=0.115 Sum_probs=71.8
Q ss_pred chhHH-HHHHHhhcccccEEEeeCccccccChh---HHHHHHHHHHhCCceecCc-cHHHHHHHhCCchHHHHHHHHH--
Q 030024 39 SHNVL-EDIFESMGQFVDGLKFSGGSHSLMPKP---FIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCK-- 111 (184)
Q Consensus 39 g~~~l-eDlLe~ag~yID~lKfg~GTs~l~p~~---~L~eKI~l~~~~gV~v~~G-tlfE~al~qg~~~~~~yl~~~k-- 111 (184)
++..+ +.+++..++++.++|.|+.-..-+-.+ .|++.|+.+++.|++|..- =+..+- +-+..|.+.+-
T Consensus 38 ~~~~f~~~ivd~~~~~v~~vK~gla~f~~~G~~G~~~l~~~i~~l~~~g~~VilD~K~~DI~-----nTv~~ya~a~~~~ 112 (278)
T PRK00125 38 GLFEFCRIIVDATADLVAAFKPQIAYFEAHGAEGLAQLERTIAYLREAGVLVIADAKRGDIG-----STAEAYAKAAFES 112 (278)
T ss_pred HHHHHHHHHHHhcCCcccEEeccHHHHHhcCchhhhHHHHHHHHHHHCCCcEEEEeecCChH-----HHHHHHHHHHhcC
Confidence 33344 789999999999999999776666544 6889999999999988874 355543 13445555555
Q ss_pred HcCCCEEEecCCcccCChhHHHHHHHHHHHC--CCeE
Q 030024 112 QVGFDTIELNVGSLEIPEETLLRYVRLVKSA--GLKA 146 (184)
Q Consensus 112 ~lGF~~IEISdGti~i~~~~r~~lI~~~~~~--Gf~v 146 (184)
++|+|+|-|+- -+..+....+++.+++. |+.|
T Consensus 113 ~~g~DavTVhp---~~G~d~l~~~~~~~~~~~k~vfV 146 (278)
T PRK00125 113 PLEADAVTVSP---YMGFDSLEPYLEYAEEHGKGVFV 146 (278)
T ss_pred ccCCcEEEECC---cCCHHHHHHHHHHHHhcCCEEEE
Confidence 79999999984 45556666667766544 4444
No 104
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=84.38 E-value=0.75 Score=36.00 Aligned_cols=101 Identities=13% Similarity=0.090 Sum_probs=62.3
Q ss_pred ccEEEeeCccccccC--hhHHHHHHHHHHhCCceecCc---c-HHHHH---------HHhCCchHHHHHHHHHHcCCCEE
Q 030024 54 VDGLKFSGGSHSLMP--KPFIEEVVKRAHQHDVYVSTG---D-WAEHL---------IRNGPSAFKEYVEDCKQVGFDTI 118 (184)
Q Consensus 54 ID~lKfg~GTs~l~p--~~~L~eKI~l~~~~gV~v~~G---t-lfE~a---------l~qg~~~~~~yl~~~k~lGF~~I 118 (184)
.|.+-+......... .+.+++-.++++++||.+..- + +...- -.+.-+.+++.++.|+.+|.+.|
T Consensus 9 ~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i 88 (213)
T PF01261_consen 9 FDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYI 88 (213)
T ss_dssp HSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEE
T ss_pred CCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCce
Confidence 455555544433332 245889999999999984431 1 11100 00001268999999999999999
Q ss_pred EecCC----cccCChh--------HHHHHHHHHHHCCCeEcccccccc
Q 030024 119 ELNVG----SLEIPEE--------TLLRYVRLVKSAGLKAKPKFAVMF 154 (184)
Q Consensus 119 EISdG----ti~i~~~--------~r~~lI~~~~~~Gf~v~~EvG~K~ 154 (184)
=+.-| ....+.+ ...++.+.+++.|+++.-|.--..
T Consensus 89 ~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~ 136 (213)
T PF01261_consen 89 VVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGP 136 (213)
T ss_dssp EEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSS
T ss_pred eecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCc
Confidence 99987 2222222 345677788888999887754443
No 105
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=84.26 E-value=2.5 Score=37.50 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=36.9
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcc------------cCChhHHHHHHHHHHHCCCeE
Q 030024 101 SAFKEYVEDCKQVGFDTIELNVGSL------------EIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti------------~i~~~~r~~lI~~~~~~Gf~v 146 (184)
+..++|++.|.++||+.|-|++|=- ..+..+..+||+.++++|..|
T Consensus 32 ~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi 89 (273)
T PF10566_consen 32 ETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGI 89 (273)
T ss_dssp HHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EE
T ss_pred HHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCE
Confidence 4689999999999999999999975 578889999999999999666
No 106
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=84.04 E-value=4 Score=40.50 Aligned_cols=62 Identities=23% Similarity=0.221 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHhCCceec--CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeE
Q 030024 69 KPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 69 ~~~L~eKI~l~~~~gV~v~--~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (184)
++-.++-|+.+|+.||.+. +|.--+.|.. -++++|++.+ +-...+++|.++|+..++.|-.|
T Consensus 447 R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~a-----------IA~elGId~v-----~A~~~PedK~~iV~~lQ~~G~~V 510 (679)
T PRK01122 447 KPGIKERFAELRKMGIKTVMITGDNPLTAAA-----------IAAEAGVDDF-----LAEATPEDKLALIRQEQAEGRLV 510 (679)
T ss_pred chhHHHHHHHHHHCCCeEEEECCCCHHHHHH-----------HHHHcCCcEE-----EccCCHHHHHHHHHHHHHcCCeE
Confidence 4558899999999999655 5864444432 2778888643 56789999999999999999665
No 107
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=83.95 E-value=2.9 Score=37.74 Aligned_cols=50 Identities=26% Similarity=0.296 Sum_probs=36.3
Q ss_pred HHHHHHHHHhCCceecC-cc-HHHHH----HHhCCchHHHHHHHHHHcCCCEEEecCC
Q 030024 72 IEEVVKRAHQHDVYVST-GD-WAEHL----IRNGPSAFKEYVEDCKQVGFDTIELNVG 123 (184)
Q Consensus 72 L~eKI~l~~~~gV~v~~-Gt-lfE~a----l~qg~~~~~~yl~~~k~lGF~~IEISdG 123 (184)
=.+-+..||++||+|.+ |+ -++.+ .++. -++.-++.+++.|||.|.|.==
T Consensus 66 ~~~~~~~A~~~~v~v~~~~~~~~~~l~~~~~R~~--fi~siv~~~~~~gfDGIdIDwE 121 (358)
T cd02875 66 DDELLCYAHSKGVRLVLKGDVPLEQISNPTYRTQ--WIQQKVELAKSQFMDGINIDIE 121 (358)
T ss_pred CHHHHHHHHHcCCEEEEECccCHHHcCCHHHHHH--HHHHHHHHHHHhCCCeEEEccc
Confidence 35778899999999998 54 23321 1221 3688899999999999998643
No 108
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=83.95 E-value=4.2 Score=40.29 Aligned_cols=64 Identities=19% Similarity=0.162 Sum_probs=49.1
Q ss_pred cChhHHHHHHHHHHhCCceec--CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCC
Q 030024 67 MPKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 144 (184)
Q Consensus 67 ~p~~~L~eKI~l~~~~gV~v~--~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf 144 (184)
-+++-.++-|+.+|+.||.+. +|.=-+.|.. -++++|++.+ +-.+.+++|.++|+..+++|-
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~a-----------IA~elGI~~v-----~A~~~PedK~~iV~~lQ~~G~ 504 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAAT-----------IAKEAGVDRF-----VAECKPEDKINVIREEQAKGH 504 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHH-----------HHHHcCCceE-----EcCCCHHHHHHHHHHHHhCCC
Confidence 355668999999999999654 5854444432 2788998743 568899999999999999997
Q ss_pred eE
Q 030024 145 KA 146 (184)
Q Consensus 145 ~v 146 (184)
.|
T Consensus 505 ~V 506 (673)
T PRK14010 505 IV 506 (673)
T ss_pred EE
Confidence 66
No 109
>PRK08323 phenylhydantoinase; Validated
Probab=83.75 E-value=22 Score=32.29 Aligned_cols=97 Identities=10% Similarity=0.102 Sum_probs=64.4
Q ss_pred ccccEEEeeCc--cccccChhHHHHHHHHHHhCCceecC--cc--HHHHH----HHhCC----------------chHHH
Q 030024 52 QFVDGLKFSGG--SHSLMPKPFIEEVVKRAHQHDVYVST--GD--WAEHL----IRNGP----------------SAFKE 105 (184)
Q Consensus 52 ~yID~lKfg~G--Ts~l~p~~~L~eKI~l~~~~gV~v~~--Gt--lfE~a----l~qg~----------------~~~~~ 105 (184)
..++.+|+..+ .....+.+.|++-++.++++|+.+.. -+ ..+.+ ...|. ..+++
T Consensus 140 ~g~~~ik~~~~~~~~~~~s~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~ 219 (459)
T PRK08323 140 EGITSFKLFMAYKGALMLDDDELLRALQRAAELGALPMVHAENGDAIAYLQAKLLAEGKTGPEYHALSRPPEVEGEATNR 219 (459)
T ss_pred cCCCEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCChhhhhccCCHHHHHHHHHH
Confidence 34577887643 33456677899999999999988754 22 22211 11121 13444
Q ss_pred HHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccc
Q 030024 106 YVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (184)
Q Consensus 106 yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG~K 153 (184)
-++.++.+|.... | .-++.++-.++|+.++++|..|-.|+.-.
T Consensus 220 ~~~~a~~~~~~~~-i----~H~s~~~~~~~i~~ak~~g~~vt~e~~p~ 262 (459)
T PRK08323 220 AIMLAELAGAPLY-I----VHVSCKEALEAIRRARARGQRVFGETCPQ 262 (459)
T ss_pred HHHHHHHhCCCEE-E----EeCCCHHHHHHHHHHHHCCCeEEEEcCcc
Confidence 5777888886654 3 55666777899999999999887677554
No 110
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=83.62 E-value=6.4 Score=35.21 Aligned_cols=118 Identities=17% Similarity=0.150 Sum_probs=79.2
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccc-cccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-CC-
Q 030024 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSH-SLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-GP- 100 (184)
Q Consensus 27 T~V~DkG~s~~~g~~~leDlLe~ag~yID~lKfg~GTs-~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g~- 100 (184)
|..+.=|=+..-....++++++....++++- .+.-.+ -.-|..+=.++++.++++|| .++.| ++=+..+.. |+
T Consensus 54 ~i~~GGGtPs~l~~~~l~~ll~~i~~~~~~~-~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~ 132 (360)
T TIGR00539 54 SIFIGGGTPNTLSVEAFERLFESIYQHASLS-DDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQ 132 (360)
T ss_pred EEEeCCCchhcCCHHHHHHHHHHHHHhCCCC-CCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhCCC
Confidence 6667666443226788999998887766421 111112 23455556789999999999 66678 565544422 31
Q ss_pred ---chHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHCCCe
Q 030024 101 ---SAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 101 ---~~~~~yl~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (184)
+.+.+-++.+++.||+.| -+.-|.-.-+.+++.+.++.+.+.|..
T Consensus 133 ~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~ 182 (360)
T TIGR00539 133 HSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAKELPIN 182 (360)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHHHccCCC
Confidence 245566778889999855 446777777888888999999988864
No 111
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=83.44 E-value=4.3 Score=35.27 Aligned_cols=101 Identities=17% Similarity=0.218 Sum_probs=59.0
Q ss_pred HHHHHHhhcccccEEEeeCccc--------cccChhHHHHHHHHHHhCCceecC-cc-HHHHHHHhCCchHHHHHHHHHH
Q 030024 43 LEDIFESMGQFVDGLKFSGGSH--------SLMPKPFIEEVVKRAHQHDVYVST-GD-WAEHLIRNGPSAFKEYVEDCKQ 112 (184)
Q Consensus 43 leDlLe~ag~yID~lKfg~GTs--------~l~p~~~L~eKI~l~~~~gV~v~~-Gt-lfE~al~qg~~~~~~yl~~~k~ 112 (184)
.-..|..+| ||.+=+|++++ .-.|.+.+++..+...+..+.... |. +.-+. .+-.+-.++.++.+.+
T Consensus 26 ia~~L~~~G--v~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~-~~p~~~~~~di~~~~~ 102 (275)
T cd07937 26 IAEALDEAG--FFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYR-HYPDDVVELFVEKAAK 102 (275)
T ss_pred HHHHHHHcC--CCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCcc-CCCcHHHHHHHHHHHH
Confidence 344677778 99999999874 333334444433332221111110 10 00000 0111136888888999
Q ss_pred cCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcc
Q 030024 113 VGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 113 lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (184)
.|++.|-|+...-++ +.-...|+.+++.|++|..
T Consensus 103 ~g~~~iri~~~~~~~--~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 103 NGIDIFRIFDALNDV--RNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred cCCCEEEEeecCChH--HHHHHHHHHHHHCCCeEEE
Confidence 999999997765553 4556789999999988764
No 112
>PRK05926 hypothetical protein; Provisional
Probab=83.07 E-value=17 Score=33.35 Aligned_cols=97 Identities=18% Similarity=0.280 Sum_probs=63.1
Q ss_pred CccccccChhHHHHHHHHHHhC--CceecCccHHHHHHHhC--CchHHHHHHHHHHcCCCEE-----EecCCcc------
Q 030024 61 GGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNG--PSAFKEYVEDCKQVGFDTI-----ELNVGSL------ 125 (184)
Q Consensus 61 ~GTs~l~p~~~L~eKI~l~~~~--gV~v~~GtlfE~al~qg--~~~~~~yl~~~k~lGF~~I-----EISdGti------ 125 (184)
.|-..-.+-+.+.+.++..+++ +|.++.=+-.|++.... .-..++.++..|+.|++.+ |+.+-++
T Consensus 122 ~G~~p~~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p 201 (370)
T PRK05926 122 AGCFPSCNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAP 201 (370)
T ss_pred eCcCCCCCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCC
Confidence 3555445567778888888876 67655434456665432 1246888999999998654 3333332
Q ss_pred -cCChhHHHHHHHHHHHCCCeEccccccccCCCCC
Q 030024 126 -EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDI 159 (184)
Q Consensus 126 -~i~~~~r~~lI~~~~~~Gf~v~~EvG~K~~~~~~ 159 (184)
..+.++|++.++.+++.|+++-+ |.=++..+.
T Consensus 202 ~~~t~~e~l~~i~~a~~~Gi~~~s--gmi~G~gEt 234 (370)
T PRK05926 202 GRLSSQGFLEIHKTAHSLGIPSNA--TMLCYHRET 234 (370)
T ss_pred CCCCHHHHHHHHHHHHHcCCcccC--ceEEeCCCC
Confidence 34668899999999999998866 555555433
No 113
>PRK07572 cytosine deaminase; Validated
Probab=82.58 E-value=10 Score=34.49 Aligned_cols=34 Identities=21% Similarity=0.225 Sum_probs=20.1
Q ss_pred CCceeEecC---CCC-CCcchhHHHHHHHhhcccccEEE
Q 030024 24 FGVTEMRSP---HYT-LSSSHNVLEDIFESMGQFVDGLK 58 (184)
Q Consensus 24 ~GlT~V~Dk---G~s-~~~g~~~leDlLe~ag~yID~lK 58 (184)
.|+|.|+|- +-+ +. ..+.+.++-+..++++|.-.
T Consensus 110 ~G~Ttvrd~~d~~~~~~~-~~~a~~~~~~~~~~~~~~~~ 147 (426)
T PRK07572 110 RGLLAIRSHVDVCDPRLL-AVEALLEVRERVAPYLDLQL 147 (426)
T ss_pred cCcccEeeccccCCCccc-HHHHHHHHHHHhhccceEEE
Confidence 499988883 211 12 44555566667777777433
No 114
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=82.41 E-value=7.6 Score=36.01 Aligned_cols=119 Identities=15% Similarity=0.116 Sum_probs=79.0
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C---
Q 030024 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G--- 99 (184)
Q Consensus 27 T~V~DkG~s~~~g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g--- 99 (184)
|..+.=|-+....+..++++++......++.+-.-=|.-.-|..+-++++++++++|+ .++.| ++-+..+.. +
T Consensus 105 ~i~~gGGtPs~l~~~~l~~ll~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~ 184 (453)
T PRK09249 105 QLHWGGGTPTFLSPEQLRRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQ 184 (453)
T ss_pred EEEECCcccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCC
Confidence 3445445433225788899999887765432100012224455556899999999999 67778 666555422 1
Q ss_pred -CchHHHHHHHHHHcCCC--EEEecCCcccCChhHHHHHHHHHHHCCCe
Q 030024 100 -PSAFKEYVEDCKQVGFD--TIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 100 -~~~~~~yl~~~k~lGF~--~IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (184)
.+.+.+-++.+++.||+ .+-+.-|.-.-+.++..+.++.+.+.|..
T Consensus 185 ~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~ 233 (453)
T PRK09249 185 PFEFTFALVEAARELGFTSINIDLIYGLPKQTPESFARTLEKVLELRPD 233 (453)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCHHHHHHHHHHHHhcCCC
Confidence 12455677888899997 45566777788889999999999998865
No 115
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=82.26 E-value=8.6 Score=29.37 Aligned_cols=107 Identities=13% Similarity=0.076 Sum_probs=60.6
Q ss_pred HHHHHHHhhccc-ccEEEeeCccccccChhHH--HHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 030024 42 VLEDIFESMGQF-VDGLKFSGGSHSLMPKPFI--EEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (184)
Q Consensus 42 ~leDlLe~ag~y-ID~lKfg~GTs~l~p~~~L--~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~I 118 (184)
...+.++.+.+. +|++-++.-.......... +....+.+..++++......-... +.+....+.+++.|+|.|
T Consensus 13 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~g~d~v 88 (200)
T cd04722 13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAA----AAVDIAAAAARAAGADGV 88 (200)
T ss_pred HHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCch----hhhhHHHHHHHHcCCCEE
Confidence 334444444343 8888888644333322112 124455667777666532211000 011122467999999999
Q ss_pred EecCCcccCChhHHHHHHHHHHHC--CCeEccccccc
Q 030024 119 ELNVGSLEIPEETLLRYVRLVKSA--GLKAKPKFAVM 153 (184)
Q Consensus 119 EISdGti~i~~~~r~~lI~~~~~~--Gf~v~~EvG~K 153 (184)
+|..+....+. .-.++++.+++. ++.+...+...
T Consensus 89 ~l~~~~~~~~~-~~~~~~~~i~~~~~~~~v~~~~~~~ 124 (200)
T cd04722 89 EIHGAVGYLAR-EDLELIRELREAVPDVKVVVKLSPT 124 (200)
T ss_pred EEeccCCcHHH-HHHHHHHHHHHhcCCceEEEEECCC
Confidence 99998875533 334677777776 78877766544
No 116
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=82.17 E-value=2.3 Score=36.01 Aligned_cols=12 Identities=33% Similarity=0.548 Sum_probs=6.2
Q ss_pred HHHHHHHHHhCC
Q 030024 72 IEEVVKRAHQHD 83 (184)
Q Consensus 72 L~eKI~l~~~~g 83 (184)
+.+.+++++++|
T Consensus 12 l~~~l~~a~~~G 23 (279)
T cd00019 12 LENALKRAKEIG 23 (279)
T ss_pred HHHHHHHHHHcC
Confidence 455555555555
No 117
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=82.16 E-value=4.6 Score=34.21 Aligned_cols=72 Identities=18% Similarity=0.305 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHhCCceecC--ccH----HHHHHHhCCc----hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHH
Q 030024 70 PFIEEVVKRAHQHDVYVST--GDW----AEHLIRNGPS----AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLV 139 (184)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~--Gtl----fE~al~qg~~----~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~ 139 (184)
..+...++.+|++|++|.+ |+| +..++ .++. -++..++.+++.|||.|.|.--....+.+....+++.+
T Consensus 46 ~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~~~-~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~~~~~~~fv~~L 124 (253)
T cd06545 46 SELNSVVNAAHAHNVKILISLAGGSPPEFTAAL-NDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVTFGDYLVFIRAL 124 (253)
T ss_pred HHHHHHHHHHHhCCCEEEEEEcCCCCCcchhhh-cCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCccHhHHHHHHHHH
Confidence 3477889999999998886 543 22222 1111 36788889999999999997655444445566676666
Q ss_pred HHC
Q 030024 140 KSA 142 (184)
Q Consensus 140 ~~~ 142 (184)
++.
T Consensus 125 r~~ 127 (253)
T cd06545 125 YAA 127 (253)
T ss_pred HHH
Confidence 654
No 118
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=81.92 E-value=23 Score=32.10 Aligned_cols=95 Identities=13% Similarity=0.132 Sum_probs=62.1
Q ss_pred ccEEEeeCccc--cccChhHHHHHHHHHHhCCceecC--cc--HHHHHHH----hCCc----------------hHHHHH
Q 030024 54 VDGLKFSGGSH--SLMPKPFIEEVVKRAHQHDVYVST--GD--WAEHLIR----NGPS----------------AFKEYV 107 (184)
Q Consensus 54 ID~lKfg~GTs--~l~p~~~L~eKI~l~~~~gV~v~~--Gt--lfE~al~----qg~~----------------~~~~yl 107 (184)
++.+|+..+.. ...+.+.|++-++.++++|+.+.. -+ +.+.... +|.. .+...+
T Consensus 144 ~~~ik~~~~~~~~~~~s~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~ 223 (447)
T cd01314 144 ISSFKVFMAYKGLLMVDDEELLDVLKRAKELGALVMVHAENGDVIAELQKKLLAQGKTGPEYHALSRPPEVEAEATARAI 223 (447)
T ss_pred CCEEEEEeccCCCCCCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChHHhhhcCCHHHHHHHHHHHH
Confidence 46688764332 334778899999999999988753 22 3332221 1311 112335
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccc
Q 030024 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (184)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG~K 153 (184)
+.++.+|...+ ..-++..+-.++|+.+++.|..+..|+.-.
T Consensus 224 ~la~~~~~~~~-----~~H~s~~~~~~~i~~~k~~g~~v~~~~~ph 264 (447)
T cd01314 224 RLAELAGAPLY-----IVHVSSKEAADEIARARKKGLPVYGETCPQ 264 (447)
T ss_pred HHHHHhCCCEE-----EEeCCCHHHHHHHHHHHHCCCeEEEecCch
Confidence 66778888776 566777777789999999998886666543
No 119
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=81.67 E-value=8 Score=32.38 Aligned_cols=101 Identities=14% Similarity=0.134 Sum_probs=64.1
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 030024 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (184)
Q Consensus 39 g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G-tlfE~al~qg~~~~~~yl~~~k~lGF~~ 117 (184)
......++++..++|+|++|+|+.- +.. ...+-|+.+++.+.++..- -+..+= +-+..|.+.+.+.|+|+
T Consensus 9 ~~~~a~~i~~~~~~~v~~iKvg~~l--~~~--~g~~~i~~l~~~~~~i~~DlK~~DIg-----~tv~~~~~~~~~~gad~ 79 (216)
T cd04725 9 DEEFALALIDALGPYVCAVKVGLEL--FEA--AGPEIVKELRELGFLVFLDLKLGDIP-----NTVAAAAEALLGLGADA 79 (216)
T ss_pred CHHHHHHHHHhcCCcccEEEECHHH--HHh--cCHHHHHHHHHCCCcEEEEeecCchH-----HHHHHHHHHHHhcCCCE
Confidence 5568889999999999999999754 332 2567777788877666543 232221 13334455556678888
Q ss_pred EEecCCcccCChhHHHHHHHHHHHCC--CeEccccc
Q 030024 118 IELNVGSLEIPEETLLRYVRLVKSAG--LKAKPKFA 151 (184)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G--f~v~~EvG 151 (184)
+-|+- ....+....+++.+++++ +.+..+.-
T Consensus 80 ~Tvh~---~~G~~~l~~~~~~~~~~~~~~~~v~~ls 112 (216)
T cd04725 80 VTVHP---YGGSDMLKAALEAAEEKGKGLFAVTVLS 112 (216)
T ss_pred EEECC---cCCHHHHHHHHHHHhccCCeEEEEEcCC
Confidence 88874 444666666666666433 34455444
No 120
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=81.59 E-value=8.2 Score=32.46 Aligned_cols=94 Identities=11% Similarity=0.061 Sum_probs=58.4
Q ss_pred HhhcccccEEEeeCccccccC--------hhHHHHHHHHHHhCCceecC--ccHHHH-HH--HhCCc----hHHHHHHHH
Q 030024 48 ESMGQFVDGLKFSGGSHSLMP--------KPFIEEVVKRAHQHDVYVST--GDWAEH-LI--RNGPS----AFKEYVEDC 110 (184)
Q Consensus 48 e~ag~yID~lKfg~GTs~l~p--------~~~L~eKI~l~~~~gV~v~~--GtlfE~-al--~qg~~----~~~~yl~~~ 110 (184)
....+.+|+|=+ |+...=.. .+..++.|..+|+.|++|.. |++..- .+ ...+. -++..++.|
T Consensus 22 ~~~pds~D~v~l-f~~~~~~~~~~~~~~~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~~~~~~~~~~~~fa~~l~~~v 100 (255)
T cd06542 22 LNLPDSVDMVSL-FAANINLDAATAVQFLLTNKETYIRPLQAKGTKVLLSILGNHLGAGFANNLSDAAAKAYAKAIVDTV 100 (255)
T ss_pred ccCCCcceEEEE-cccccCcccccchhhhhHHHHHHHHHHhhCCCEEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHH
Confidence 345588888877 55432222 36688999999999998874 543211 10 11111 256667788
Q ss_pred HHcCCCEEEecCCccc--------CChhHHHHHHHHHHHC
Q 030024 111 KQVGFDTIELNVGSLE--------IPEETLLRYVRLVKSA 142 (184)
Q Consensus 111 k~lGF~~IEISdGti~--------i~~~~r~~lI~~~~~~ 142 (184)
++.|||.|-|.--... -..+....+|+.+++.
T Consensus 101 ~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~ 140 (255)
T cd06542 101 DKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKY 140 (255)
T ss_pred HHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHH
Confidence 8999999988543221 1345667788877765
No 121
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=81.39 E-value=11 Score=34.12 Aligned_cols=116 Identities=11% Similarity=0.156 Sum_probs=81.8
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEE-EeeCccccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C-C
Q 030024 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGL-KFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G-P 100 (184)
Q Consensus 27 T~V~DkG~s~~~g~~~leDlLe~ag~yID~l-Kfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g-~ 100 (184)
|.-++=|-|..-....++.+|+....+++-. -+ |.-..|..+-.+++++++++|| .++.| ++=+..+.. | +
T Consensus 59 tiy~GGGTPs~L~~~~l~~ll~~i~~~~~~~~ei---tiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~ 135 (353)
T PRK05904 59 TIYLGGGTPNCLNDQLLDILLSTIKPYVDNNCEF---TIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRT 135 (353)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhcCCCCeE---EEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC
Confidence 5556655443226788999999988875321 11 3344566777899999999999 77778 666666532 2 1
Q ss_pred ---chHHHHHHHHHHcCCC--EEEecCCcccCChhHHHHHHHHHHHCCCe
Q 030024 101 ---SAFKEYVEDCKQVGFD--TIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 101 ---~~~~~yl~~~k~lGF~--~IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (184)
+.+.+-++.|++.||+ .+.+--|.=.-+.++..+.++.+.+.+..
T Consensus 136 ~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~ 185 (353)
T PRK05904 136 HTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEVFNFILKHKIN 185 (353)
T ss_pred CCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHHHHHHHHhcCCC
Confidence 2355566778889998 45666777788888888899999888765
No 122
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=81.20 E-value=8.3 Score=35.42 Aligned_cols=78 Identities=19% Similarity=0.231 Sum_probs=58.5
Q ss_pred HHHHHHHHhCCceecC----c-c----HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHH----HHHHHH
Q 030024 73 EEVVKRAHQHDVYVST----G-D----WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLL----RYVRLV 139 (184)
Q Consensus 73 ~eKI~l~~~~gV~v~~----G-t----lfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~----~lI~~~ 139 (184)
.--..+++++.|+|+. | + |||.++.- +.+++..|.+.||+.|=|. || .+|.++=. ++++++
T Consensus 77 ~~v~~~A~~~~VPValHLDHg~~~~~~~~~~~~~a----~~~~~~~a~~~GftSVMiD-gS-~lp~eENI~~TkevVe~A 150 (345)
T cd00946 77 HHVRSMAEHYGVPVVLHTDHCAKKLLPWFDGLLEA----DEEYFKQHGEPLFSSHMLD-LS-EEPLEENIEICKKYLERM 150 (345)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCccchhhHHHHHH----HHHHHHHhccCCCceEEee-CC-CCCHHHHHHHHHHHHHHH
Confidence 3345688899999885 5 4 68888765 4688999999999999765 44 25555433 567788
Q ss_pred HHCCCeEccccccccCC
Q 030024 140 KSAGLKAKPKFAVMFNK 156 (184)
Q Consensus 140 ~~~Gf~v~~EvG~K~~~ 156 (184)
...|.-|-.|+|.=-+.
T Consensus 151 h~~gvsVEaElG~igg~ 167 (345)
T cd00946 151 AKINMWLEMEIGITGGE 167 (345)
T ss_pred HHcCCEEEEEecccCCc
Confidence 88999999999986443
No 123
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=81.19 E-value=6.2 Score=33.53 Aligned_cols=69 Identities=23% Similarity=0.190 Sum_probs=49.8
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC-CCeEccccccccCCCCCCchhhhhccccccCCCCCCC
Q 030024 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 179 (184)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~-Gf~v~~EvG~K~~~~~~~~~~~~a~ga~~~~~~~~~~ 179 (184)
+.+..+.+.+.|.|+|+|+ ||..+..+.-.++++.+|+. .+-|.-|.|.-++-. +.+-||..|+==||.
T Consensus 13 ~~~ia~~v~~~gtDaI~VG-GS~gvt~~~~~~~v~~ik~~~~lPvilfp~~~~~i~-------~~aD~~~~~sllns~ 82 (205)
T TIGR01769 13 IEKIAKNAKDAGTDAIMVG-GSLGIVESNLDQTVKKIKKITNLPVILFPGNVNGLS-------RYADAVFFMSLLNSA 82 (205)
T ss_pred HHHHHHHHHhcCCCEEEEc-CcCCCCHHHHHHHHHHHHhhcCCCEEEECCCccccC-------cCCCEEEEEEeecCC
Confidence 4555668999999999997 66778999999999999995 567776766544332 335667777654443
No 124
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=80.98 E-value=6.2 Score=32.31 Aligned_cols=66 Identities=18% Similarity=0.249 Sum_probs=52.1
Q ss_pred HHHHHHHhCCc-eec-CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeE
Q 030024 74 EVVKRAHQHDV-YVS-TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 74 eKI~l~~~~gV-~v~-~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (184)
+..++++++|| .++ .|--.++|+..- ...+.++||+.+=++|++-+.+.+.....++..+..|.++
T Consensus 128 ~L~~~L~~~~i~~lii~G~~t~~CV~~T-------~~~a~~~g~~v~v~~Da~~~~~~~~~~~al~~~~~~G~~i 195 (196)
T cd01011 128 GLAEYLRERGIDRVDVVGLATDYCVKAT-------ALDALKAGFEVRVLEDACRAVDPETIERAIEEMKEAGVVL 195 (196)
T ss_pred hHHHHHHHCCCCEEEEEEecccHHHHHH-------HHHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHHccCEE
Confidence 34556778999 344 487888888763 3345667999999999999999999999999999988765
No 125
>PRK04302 triosephosphate isomerase; Provisional
Probab=80.97 E-value=4.6 Score=33.82 Aligned_cols=49 Identities=16% Similarity=0.072 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcccccc
Q 030024 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (184)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG~ 152 (184)
+.+.+.++++|.+.|-+-+.--.++.++-.++++.+++.|+.++.+++-
T Consensus 75 ~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~~v~~ 123 (223)
T PRK04302 75 HILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVVCVNN 123 (223)
T ss_pred hhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4457788888888888887655677777788888888888888776665
No 126
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=80.69 E-value=36 Score=30.87 Aligned_cols=125 Identities=14% Similarity=0.129 Sum_probs=73.5
Q ss_pred CCCceeEecCCCC---CCcchhHHHHHHHhhc--ccccEEEee------------------------Ccc-----ccccC
Q 030024 23 RFGVTEMRSPHYT---LSSSHNVLEDIFESMG--QFVDGLKFS------------------------GGS-----HSLMP 68 (184)
Q Consensus 23 ~~GlT~V~DkG~s---~~~g~~~leDlLe~ag--~yID~lKfg------------------------~GT-----s~l~p 68 (184)
..|+|.|+|-+.. .......+++.++.+. .++|+--.+ .+. ....+
T Consensus 81 ~gGvTtv~d~p~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ei~~l~~~G~~giKv~~~~~~~~~~~~~~ 160 (447)
T cd01315 81 AGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKLHVDVGFWGGLVPGNLDQLRPLDEAGVVGFKCFLCPSGVDEFPAVD 160 (447)
T ss_pred hCCceEEEeCCCCCCCCcCCHHHHHHHHHHhccCceeeEEEEEeecCCCHHHHHHHHHcCCcEEEEEecccCCCCcccCC
Confidence 3599999987532 2224567777777653 355553222 111 01235
Q ss_pred hhHHHHHHHHHHhCCceecC--c--cHHHHHHH--------------h------CCchHHHHHHHHHHcCCCEEEecCCc
Q 030024 69 KPFIEEVVKRAHQHDVYVST--G--DWAEHLIR--------------N------GPSAFKEYVEDCKQVGFDTIELNVGS 124 (184)
Q Consensus 69 ~~~L~eKI~l~~~~gV~v~~--G--tlfE~al~--------------q------g~~~~~~yl~~~k~lGF~~IEISdGt 124 (184)
.+.+++-++.++++|..++. + .++..... + -...+.++++.+++.|... =|+-
T Consensus 161 ~~~l~~~~~~a~~~g~~v~vH~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~~~~~~~la~~~g~~i-hi~h-- 237 (447)
T cd01315 161 DEQLEEAMKELAKTGSVLAVHAENPEITEALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKETGCRL-HIVH-- 237 (447)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHhHhhcCCCChHHhhccCCHHHHHHHHHHHHHHHHHhCCCE-EEEe--
Confidence 56788888888888887764 3 23221110 0 0125788888899988543 2222
Q ss_pred ccCChhHHHHHHHHHHHCCCeEcccccc
Q 030024 125 LEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (184)
Q Consensus 125 i~i~~~~r~~lI~~~~~~Gf~v~~EvG~ 152 (184)
++...=.++|+.++..|+.+..|+-.
T Consensus 238 --~s~~~~~~~i~~~~~~g~~i~~e~~~ 263 (447)
T cd01315 238 --LSSAEAVPLIREARAEGVDVTVETCP 263 (447)
T ss_pred --CCCHHHHHHHHHHHHCCCceEEEecc
Confidence 22355678889999999887766543
No 127
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=80.62 E-value=10 Score=33.06 Aligned_cols=10 Identities=30% Similarity=0.488 Sum_probs=6.3
Q ss_pred CCceeEecCC
Q 030024 24 FGVTEMRSPH 33 (184)
Q Consensus 24 ~GlT~V~DkG 33 (184)
.|+|-|++.+
T Consensus 108 ~GvTtv~~~~ 117 (398)
T cd01293 108 HGTTAIRTHV 117 (398)
T ss_pred cChhheeeee
Confidence 4777776644
No 128
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=80.55 E-value=10 Score=31.96 Aligned_cols=107 Identities=12% Similarity=0.067 Sum_probs=65.6
Q ss_pred HHHHHHHhhc-ccccEEEeeCcccc------ccChhHHHHHHHHHHhCCceecCc--cH---H------HHHHHhCCchH
Q 030024 42 VLEDIFESMG-QFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQHDVYVSTG--DW---A------EHLIRNGPSAF 103 (184)
Q Consensus 42 ~leDlLe~ag-~yID~lKfg~GTs~------l~p~~~L~eKI~l~~~~gV~v~~G--tl---f------E~al~qg~~~~ 103 (184)
+.=+.+..+| ++|++. ..... =++.+.+++.-++++++|+.++.. +. + +..-.+.-+.+
T Consensus 25 e~~~~~~~~G~~~iEl~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 101 (283)
T PRK13209 25 EKLAIAKTAGFDFVEMS---VDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIM 101 (283)
T ss_pred HHHHHHHHcCCCeEEEe---cCccccchhccCCCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHHH
Confidence 4444555566 666652 22211 123456888899999999987541 11 1 11111111268
Q ss_pred HHHHHHHHHcCCCEEEecCCccc--CC--------hhHHHHHHHHHHHCCCeEccccc
Q 030024 104 KEYVEDCKQVGFDTIELNVGSLE--IP--------EETLLRYVRLVKSAGLKAKPKFA 151 (184)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~--i~--------~~~r~~lI~~~~~~Gf~v~~EvG 151 (184)
++.++.|+++|.++|=+..+... .+ .+...++.+.+++.|.++--|.-
T Consensus 102 ~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~ 159 (283)
T PRK13209 102 RKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEIM 159 (283)
T ss_pred HHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeec
Confidence 89999999999999987644321 11 12335678888999999888864
No 129
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=80.21 E-value=7.5 Score=34.90 Aligned_cols=120 Identities=13% Similarity=0.103 Sum_probs=78.1
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C-C-
Q 030024 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G-P- 100 (184)
Q Consensus 27 T~V~DkG~s~~~g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g-~- 100 (184)
|.-+.=|-+..-++..++++++....++++..---=|.-.-|..+-.++++.++++|| .++.| ++-+..+.. | .
T Consensus 62 ~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~ 141 (375)
T PRK05628 62 TVFVGGGTPSLLGAEGLARVLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTH 141 (375)
T ss_pred EEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCC
Confidence 4444445433226789999999887765432211112223466666789999999999 77778 666666533 1 1
Q ss_pred --chHHHHHHHHHHcCCCEEEe--cCCcccCChhHHHHHHHHHHHCCCeE
Q 030024 101 --SAFKEYVEDCKQVGFDTIEL--NVGSLEIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 101 --~~~~~yl~~~k~lGF~~IEI--SdGti~i~~~~r~~lI~~~~~~Gf~v 146 (184)
+.+.+-++.+++.||+.|-+ --|.=.-+.+++.+-++.+.+.|..-
T Consensus 142 s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~~tl~~~~~l~~~~ 191 (375)
T PRK05628 142 TPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWRASLDAALEAGVDH 191 (375)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHHHHHHHHHhcCCCE
Confidence 23555667788899985543 35666677788888899998888653
No 130
>PRK15447 putative protease; Provisional
Probab=80.07 E-value=9.7 Score=33.63 Aligned_cols=90 Identities=21% Similarity=0.142 Sum_probs=54.3
Q ss_pred hHHHHHHHhhcc-cccEEEeeCccccc---cChhHHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcC
Q 030024 41 NVLEDIFESMGQ-FVDGLKFSGGSHSL---MPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVG 114 (184)
Q Consensus 41 ~~leDlLe~ag~-yID~lKfg~GTs~l---~p~~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~~yl~~~k~lG 114 (184)
..++++.....+ -+|-|=+|...... +..+.+++-++.+|++|.+||.- ..+.. .. .++.+.+.++ .|
T Consensus 15 ~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~---~~--e~~~l~~~l~-~~ 88 (301)
T PRK15447 15 ETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEA---PS--ELKELRRLVE-NG 88 (301)
T ss_pred CCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccC---HH--HHHHHHHHHh-cC
Confidence 355666665533 58888888654332 55677999999999999988764 22210 11 2333333222 37
Q ss_pred CCEEEecCCcccCChhHHHHHHHHHHHCCCeE
Q 030024 115 FDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 115 F~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (184)
.+.|.|+| ...++.+++.|+.+
T Consensus 89 ~~~v~v~d----------~g~l~~~~e~~~~l 110 (301)
T PRK15447 89 EFLVEAND----------LGAVRLLAERGLPF 110 (301)
T ss_pred CCEEEEeC----------HHHHHHHHhcCCCE
Confidence 77888876 34455555556655
No 131
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=79.90 E-value=30 Score=29.31 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHhCCceecC---cc-----HH---HHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc---CCh-----
Q 030024 69 KPFIEEVVKRAHQHDVYVST---GD-----WA---EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE---IPE----- 129 (184)
Q Consensus 69 ~~~L~eKI~l~~~~gV~v~~---Gt-----lf---E~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~---i~~----- 129 (184)
...+.+--+++.++||.++. +. |. +....+.-+.+++.++.|+.+|.+.|=+..+... .+.
T Consensus 51 ~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~ 130 (279)
T TIGR00542 51 REQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRR 130 (279)
T ss_pred HHHHHHHHHHHHHcCCCceeeecCCCccCcCCCcCHHHHHHHHHHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHH
Confidence 45577788889999998763 21 11 1111122225788899999999999977644221 112
Q ss_pred --hHHHHHHHHHHHCCCeEcccc
Q 030024 130 --ETLLRYVRLVKSAGLKAKPKF 150 (184)
Q Consensus 130 --~~r~~lI~~~~~~Gf~v~~Ev 150 (184)
+...++.+.|++.|.++.-|.
T Consensus 131 ~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 131 FREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHHcCCEEEEee
Confidence 233466778888899887773
No 132
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=79.88 E-value=4.9 Score=35.97 Aligned_cols=87 Identities=21% Similarity=0.363 Sum_probs=47.0
Q ss_pred ccccEEEeeCccccccChhHHHHHHHHHHhCCceec-----C-c---cHHHHHHHhCCc----hHHHHHHHHHHcCCCEE
Q 030024 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS-----T-G---DWAEHLIRNGPS----AFKEYVEDCKQVGFDTI 118 (184)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~-----~-G---tlfE~al~qg~~----~~~~yl~~~k~lGF~~I 118 (184)
+|||..=. |.-..+..+ =-.-|+.||+|||+|. . | .|++.++.+..+ -+++.++.|+.+|||..
T Consensus 27 ~yiD~fvy-wsh~~i~iP--~~~widaAHrnGV~vLGTiife~~~~~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDGw 103 (311)
T PF03644_consen 27 QYIDIFVY-WSHGLITIP--PAGWIDAAHRNGVKVLGTIIFEWGGGAEWCEELLEKDEDGSFPYADKLIEIAKYYGFDGW 103 (311)
T ss_dssp GG-SEEEE-T-TBSSE-----HHHHHHHHHTT--EEEEEEEEEE--HHHHHHHT---TTS--HHHHHHHHHHHHHT--EE
T ss_pred cceeeEee-cccccccCC--CchhHHHHHhcCceEEEEEEecCCchHHHHHHHHcCCcccccHHHHHHHHHHHHcCCCce
Confidence 68887533 544444433 2467899999999986 2 2 388888884322 27899999999999975
Q ss_pred ----EecCCcccCChhHHHHHHHHHHHC
Q 030024 119 ----ELNVGSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 119 ----EISdGti~i~~~~r~~lI~~~~~~ 142 (184)
|.+-+.- -..+.....++.+++.
T Consensus 104 ~iN~E~~~~~~-~~~~~l~~F~~~l~~~ 130 (311)
T PF03644_consen 104 LINIETPLSGP-EDAENLIDFLKYLRKE 130 (311)
T ss_dssp EEEEEESSTTG-GGHHHHHHHHHHHHHH
T ss_pred EEEecccCCch-hHHHHHHHHHHHHHHH
Confidence 4443321 1223344555555444
No 133
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=79.88 E-value=3.1 Score=34.33 Aligned_cols=54 Identities=15% Similarity=0.121 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCCCEEEecCCc---------c-----cC-----ChhHHHHHHHHHHHCCCeEccccccccCC
Q 030024 103 FKEYVEDCKQVGFDTIELNVGS---------L-----EI-----PEETLLRYVRLVKSAGLKAKPKFAVMFNK 156 (184)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGt---------i-----~i-----~~~~r~~lI~~~~~~Gf~v~~EvG~K~~~ 156 (184)
+.+=|+++++|||++|++|-=+ - .+ +.++..+||+.+.++|++|+--+=..+.+
T Consensus 6 i~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~ 78 (316)
T PF00128_consen 6 IIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTS 78 (316)
T ss_dssp HHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEE
T ss_pred HHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccc
Confidence 3444778899999999987311 1 11 24788999999999999997666555433
No 134
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=79.74 E-value=5.1 Score=33.82 Aligned_cols=40 Identities=5% Similarity=-0.176 Sum_probs=30.5
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHH
Q 030024 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKR 78 (184)
Q Consensus 39 g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l 78 (184)
......++++...+++|++|+|+--..-+..+.+++.-++
T Consensus 14 ~~~~a~~l~~~l~~~v~~~kvG~~l~~~~G~~~i~~lk~~ 53 (216)
T PRK13306 14 DLESAIEDAKKVAEEVDIIEVGTILLLAEGMKAVRVLRAL 53 (216)
T ss_pred CHHHHHHHHHHccccCCEEEEChHHHHHhCHHHHHHHHHH
Confidence 5667888999999999999999877666655555554443
No 135
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=79.62 E-value=17 Score=31.49 Aligned_cols=77 Identities=17% Similarity=0.177 Sum_probs=52.8
Q ss_pred hHHHHHHHhhcccccEEEeeCcc--------ccccChhHHHHHHHHHHhC-CceecC--ccHHHHHHHhCCchHHHHHHH
Q 030024 41 NVLEDIFESMGQFVDGLKFSGGS--------HSLMPKPFIEEVVKRAHQH-DVYVST--GDWAEHLIRNGPSAFKEYVED 109 (184)
Q Consensus 41 ~~leDlLe~ag~yID~lKfg~GT--------s~l~p~~~L~eKI~l~~~~-gV~v~~--GtlfE~al~qg~~~~~~yl~~ 109 (184)
...-+.++.++.+.|++=+-.|+ +.....+.+.+.++-.++. +++|.. .. +.+...++.+.
T Consensus 106 ~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~--------~~~~~~~~a~~ 177 (300)
T TIGR01037 106 AEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSP--------NVTDITEIAKA 177 (300)
T ss_pred HHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCC--------ChhhHHHHHHH
Confidence 34444555555678888886664 4556677889999888875 666553 21 11245677788
Q ss_pred HHHcCCCEEEecCCcc
Q 030024 110 CKQVGFDTIELNVGSL 125 (184)
Q Consensus 110 ~k~lGF~~IEISdGti 125 (184)
+.+.|.|.|.|++++.
T Consensus 178 l~~~G~d~i~v~nt~~ 193 (300)
T TIGR01037 178 AEEAGADGLTLINTLR 193 (300)
T ss_pred HHHcCCCEEEEEccCC
Confidence 9999999999997653
No 136
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=79.02 E-value=16 Score=29.19 Aligned_cols=120 Identities=19% Similarity=0.260 Sum_probs=67.5
Q ss_pred CccccccccCCCCCCCCCCCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHh
Q 030024 2 SGYYYGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQ 81 (184)
Q Consensus 2 ~~~~~~~~~f~~~~~R~~KPR~~GlT~V~DkG~s~~~g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~ 81 (184)
.||+..|..-. .+. +.+-...++|+|.=-.+.+. . .|.- .. +.+ .+.+...+.+..+++
T Consensus 2 v~y~~~w~~~~-~~~-~~~~~~~~~thvi~~f~~v~----~-------~~~~---~~--~~~---~~~~~~~~~i~~l~~ 60 (210)
T cd00598 2 ICYYDGWSSGR-GPD-PTDIPLSLCTHIIYAFAEIS----S-------DGSL---NL--FGD---KSEEPLKGALEELAS 60 (210)
T ss_pred EEEEccccccC-CCC-hhhCCcccCCEEEEeeEEEC----C-------CCCE---ec--ccC---cccHHHHHHHHHHHH
Confidence 47777886522 222 45666668888875544221 0 0000 00 111 122346667777777
Q ss_pred C--CceecC--ccHHHHH---HHhCCc----hHHHHHHHHHHcCCCEEEecCCcccCC----hhHHHHHHHHHHHC
Q 030024 82 H--DVYVST--GDWAEHL---IRNGPS----AFKEYVEDCKQVGFDTIELNVGSLEIP----EETLLRYVRLVKSA 142 (184)
Q Consensus 82 ~--gV~v~~--GtlfE~a---l~qg~~----~~~~yl~~~k~lGF~~IEISdGti~i~----~~~r~~lI~~~~~~ 142 (184)
. |++|.+ |+|-... +..+++ -++..++.+++.|||.|.|.=-..... .+....+|+.+++.
T Consensus 61 ~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~ 136 (210)
T cd00598 61 KKPGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSA 136 (210)
T ss_pred hCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHH
Confidence 6 887776 6533211 122211 367788888999999999976555444 35666777777665
No 137
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=78.96 E-value=5.4 Score=35.36 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=25.4
Q ss_pred cCChhHHHHHHHHHHHCCCeEccccccc
Q 030024 126 EIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (184)
Q Consensus 126 ~i~~~~r~~lI~~~~~~Gf~v~~EvG~K 153 (184)
-.+.++..++|+.|+++|..|+||+-.-
T Consensus 78 ~YT~~di~eiv~yA~~rgI~vIPEID~P 105 (326)
T cd06564 78 YYTKEEFKELIAYAKDRGVNIIPEIDSP 105 (326)
T ss_pred cccHHHHHHHHHHHHHcCCeEeccCCCc
Confidence 5789999999999999999999999764
No 138
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=78.58 E-value=15 Score=34.07 Aligned_cols=108 Identities=14% Similarity=0.193 Sum_probs=74.7
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C-C---chHHHHHHHH
Q 030024 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G-P---SAFKEYVEDC 110 (184)
Q Consensus 39 g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g-~---~~~~~yl~~~ 110 (184)
.+..+.++++..-.+..+.+-..-|.-+-|..+-.++++.++++|+ .++.| ++=+..+.. + . +.+.+-++.+
T Consensus 117 ~~~~l~~ll~~i~~~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l 196 (455)
T TIGR00538 117 SPEQISRLMKLIRENFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHA 196 (455)
T ss_pred CHHHHHHHHHHHHHhCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 5778899998887764322111123334555556789999999999 66668 565544422 1 1 2366678888
Q ss_pred HHcCCC--EEEecCCcccCChhHHHHHHHHHHHCCCeE
Q 030024 111 KQVGFD--TIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 111 k~lGF~--~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (184)
++.||+ .+-+.-|.-.-+.++..+.++.+.+.|..-
T Consensus 197 ~~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~~~~ 234 (455)
T TIGR00538 197 REAGFTSINIDLIYGLPKQTKESFAKTLEKVAELNPDR 234 (455)
T ss_pred HhcCCCcEEEeEEeeCCCCCHHHHHHHHHHHHhcCCCE
Confidence 899998 456667777788999999999999988653
No 139
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=78.56 E-value=21 Score=30.39 Aligned_cols=91 Identities=16% Similarity=0.107 Sum_probs=62.9
Q ss_pred hhHHHHHHHhhcccccEE------------EeeCccccccChhHHHHHHHHHHhCCceecC--c-cHHHHHHHhCCchHH
Q 030024 40 HNVLEDIFESMGQFVDGL------------KFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--G-DWAEHLIRNGPSAFK 104 (184)
Q Consensus 40 ~~~leDlLe~ag~yID~l------------Kfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~--G-tlfE~al~qg~~~~~ 104 (184)
+..+....+...++.|+| |-|.|+..+.+++.+.+.++-.++.+++|+. . +|- . ...
T Consensus 84 ~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~~------~--~~~ 155 (233)
T cd02911 84 LEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGVD------V--DDE 155 (233)
T ss_pred HHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCcC------c--CHH
Confidence 445555554444455555 4467888888899999999999999888775 2 331 1 455
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHH
Q 030024 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVK 140 (184)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~ 140 (184)
+..+.+.+.|.+.|-++.+.-. ...++ ++|++++
T Consensus 156 ~la~~l~~aG~d~ihv~~~~~g-~~ad~-~~I~~i~ 189 (233)
T cd02911 156 ELARLIEKAGADIIHVDAMDPG-NHADL-KKIRDIS 189 (233)
T ss_pred HHHHHHHHhCCCEEEECcCCCC-CCCcH-HHHHHhc
Confidence 6777889999999999876543 22233 7777776
No 140
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=78.40 E-value=5.4 Score=36.62 Aligned_cols=46 Identities=17% Similarity=0.266 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHH----HHHHHHHHHCCCeEc
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETL----LRYVRLVKSAGLKAK 147 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r----~~lI~~~~~~Gf~v~ 147 (184)
...+.++.++++||+.||+.+.- ...+.+++ .++-+.+++.|++|-
T Consensus 33 ~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~ 85 (382)
T TIGR02631 33 DPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVP 85 (382)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEE
Confidence 67888999999999999998754 23343332 466677888999963
No 141
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=78.33 E-value=8.7 Score=36.24 Aligned_cols=95 Identities=14% Similarity=0.147 Sum_probs=71.4
Q ss_pred HHHHHHHh-hcccccEEEeeCccccccChhHHHHHHHHHHhCCceec--Cc-cHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 030024 42 VLEDIFES-MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--TG-DWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (184)
Q Consensus 42 ~leDlLe~-ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~--~G-tlfE~al~qg~~~~~~yl~~~k~lGF~~ 117 (184)
..+..++. +..-||.+-+....+-+- .+++-|+.++++|..+. .. ++-. ...++.+.++.+.+.+.|.+.
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~~---n~~~~v~~ak~~G~~v~~~i~~t~~p---~~~~~~~~~~a~~l~~~Gad~ 170 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALNDVR---NLETAVKATKKAGGHAQVAISYTTSP---VHTIDYFVKLAKEMQEMGADS 170 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcHH---HHHHHHHHHHHcCCeEEEEEEeecCC---CCCHHHHHHHHHHHHHcCCCE
Confidence 34555554 444599999988766553 48999999999997542 22 2211 133346777888889999999
Q ss_pred EEecCCcccCChhHHHHHHHHHHHC
Q 030024 118 IELNVGSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~ 142 (184)
|=|.|-.--+.+.+-.++|+.+++.
T Consensus 171 I~i~Dt~G~l~P~~v~~lv~alk~~ 195 (448)
T PRK12331 171 ICIKDMAGILTPYVAYELVKRIKEA 195 (448)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999986
No 142
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=78.24 E-value=5.3 Score=35.42 Aligned_cols=51 Identities=18% Similarity=0.319 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhCCceecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc
Q 030024 71 FIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS 124 (184)
Q Consensus 71 ~L~eKI~l~~~~gV~v~~G-tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGt 124 (184)
.+.+-|+.++++|+.|..- |++. ..+.+.+.++++.++++|++.|-||-++
T Consensus 150 ~~l~~I~~l~~~G~~v~v~~tv~~---~~n~~ei~~~~~~~~~lGv~~i~i~p~~ 201 (318)
T TIGR03470 150 RAVEAIREAKARGFRVTTNTTLFN---DTDPEEVAEFFDYLTDLGVDGMTISPGY 201 (318)
T ss_pred HHHHHHHHHHHCCCcEEEEEEEeC---CCCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 3556777777777766554 3321 1334467778888888888877776553
No 143
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=78.21 E-value=9.5 Score=36.49 Aligned_cols=100 Identities=16% Similarity=0.201 Sum_probs=68.2
Q ss_pred chhHHHHHHHhhcc-cccEEEee------CccccccChhHHHHHHHHHHhCCceecC-cc-HHHHHH--------HhCCc
Q 030024 39 SHNVLEDIFESMGQ-FVDGLKFS------GGSHSLMPKPFIEEVVKRAHQHDVYVST-GD-WAEHLI--------RNGPS 101 (184)
Q Consensus 39 g~~~leDlLe~ag~-yID~lKfg------~GTs~l~p~~~L~eKI~l~~~~gV~v~~-Gt-lfE~al--------~qg~~ 101 (184)
.+..+++.+...|+ =|-++-.. +|+ .+|-+.|++--++||+|||++.. |. +||.|+ .+| -
T Consensus 168 dl~~le~~I~~~g~~~i~~v~~tlt~N~~GGq--pvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~-~ 244 (467)
T TIGR02617 168 DLEGLERGIEEVGPNNVPYIVATITCNSAGGQ--PVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKN-W 244 (467)
T ss_pred CHHHHHHHHhhcCCCCceeeeeeEEEecCCCE--EeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcC-C
Confidence 67788999987552 23333322 233 56777899999999999999998 74 999664 233 3
Q ss_pred hHHHHHHHHHHcCCCEEEecC---------CcccCChhHHHHHHHHHHHC
Q 030024 102 AFKEYVEDCKQVGFDTIELNV---------GSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISd---------Gti~i~~~~r~~lI~~~~~~ 142 (184)
.+.++.++.-+ .+|.|-+|- |.+-.+.+.+.++-++++..
T Consensus 245 si~eI~rE~~~-~aDsvt~slsKglgApvGg~Lag~d~~~~~l~~~~~~~ 293 (467)
T TIGR02617 245 SIEQITRETYK-YADMLAMSAKKDAMVPMGGLLCFKDDSFFDVYTECRTL 293 (467)
T ss_pred CHHHHHHHhhc-cCCEEEEEcCCCCCCcccceEEecchhHHHHHHHHHhh
Confidence 57777755544 378888773 45566777666777776653
No 144
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=78.04 E-value=11 Score=34.44 Aligned_cols=92 Identities=12% Similarity=0.143 Sum_probs=59.2
Q ss_pred ccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc-----
Q 030024 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL----- 125 (184)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~-~~~yl~~~k~lGF~~IEISdGti----- 125 (184)
.-|+-|=||+||..+++.+.|++.++..+++= ++.+. .|+.+.-+|+. -++.++.++++||+.|.|---|.
T Consensus 72 ~~i~siy~GGGTPs~L~~~~L~~ll~~i~~~~-~~~~~--~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L 148 (394)
T PRK08898 72 RQVHTVFIGGGTPSLLSAAGLDRLLSDVRALL-PLDPD--AEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHL 148 (394)
T ss_pred CceeEEEECCCCcCCCCHHHHHHHHHHHHHhC-CCCCC--CeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHH
Confidence 45888999999999999999999999887651 11111 13333333322 24778889999999888754443
Q ss_pred -----cCChhHHHHHHHHHHHCCCeE
Q 030024 126 -----EIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~Gf~v 146 (184)
.-+.++-.+.|+.+++.+..|
T Consensus 149 ~~l~R~~~~~~~~~~i~~~~~~~~~v 174 (394)
T PRK08898 149 KALGRIHDGAEARAAIEIAAKHFDNF 174 (394)
T ss_pred HHhCCCCCHHHHHHHHHHHHHhCCce
Confidence 123344556677777654333
No 145
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=77.93 E-value=17 Score=33.59 Aligned_cols=116 Identities=13% Similarity=0.110 Sum_probs=78.4
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEEeeC---c-cccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-
Q 030024 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSG---G-SHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN- 98 (184)
Q Consensus 27 T~V~DkG~s~~~g~~~leDlLe~ag~yID~lKfg~---G-Ts~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q- 98 (184)
|..++=|-+..-.+..++++++....+.. +.+ . |.-..|..+-.++++.++++|| .++.| ++-+..+..
T Consensus 94 ~i~~GGGTPs~l~~~~l~~Ll~~i~~~~~---~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l 170 (430)
T PRK08208 94 SFAVGGGTPTLLNAAELEKLFDSVERVLG---VDLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHAL 170 (430)
T ss_pred EEEEcCCccccCCHHHHHHHHHHHHHhCC---CCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHh
Confidence 44455554332267888999998876553 222 1 2224466666899999999999 77778 664444422
Q ss_pred CC----chHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHCCCe
Q 030024 99 GP----SAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 99 g~----~~~~~yl~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (184)
|. +.+.+-++.|++.||+.| -+--|.=.-+.++..+.++.+.+.|..
T Consensus 171 ~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~~~ 223 (430)
T PRK08208 171 HRPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQALVYRPE 223 (430)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhCCCC
Confidence 21 236667788899999875 556676677778888889999988764
No 146
>PRK12313 glycogen branching enzyme; Provisional
Probab=77.77 E-value=5.8 Score=38.44 Aligned_cols=52 Identities=13% Similarity=0.197 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCCCEEEecCC----------c-----ccC-----ChhHHHHHHHHHHHCCCeEcccccccc
Q 030024 103 FKEYVEDCKQVGFDTIELNVG----------S-----LEI-----PEETLLRYVRLVKSAGLKAKPKFAVMF 154 (184)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdG----------t-----i~i-----~~~~r~~lI~~~~~~Gf~v~~EvG~K~ 154 (184)
.++.++++++||+++||++== . ..+ +.++..++|+.+.++|++|+-.+=..+
T Consensus 173 ~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH 244 (633)
T PRK12313 173 ADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVPGH 244 (633)
T ss_pred HHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 455678999999999998531 1 112 256888999999999999976654433
No 147
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=77.75 E-value=3.1 Score=35.25 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 030024 69 KPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (184)
Q Consensus 69 ~~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISd 122 (184)
+..-.+.++.|+++||.+.|| |--|+.-. .++|++.|-+==
T Consensus 83 P~~~~~vi~~a~~~~i~~iPG~~TptEi~~A-------------~~~Ga~~vK~FP 125 (201)
T PRK06015 83 PGTTQELLAAANDSDVPLLPGAATPSEVMAL-------------REEGYTVLKFFP 125 (201)
T ss_pred CCCCHHHHHHHHHcCCCEeCCCCCHHHHHHH-------------HHCCCCEEEECC
Confidence 345678889999999999999 89998754 457888877653
No 148
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=77.65 E-value=7.5 Score=32.46 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=53.6
Q ss_pred HHHHhCCc-eecC-ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcc
Q 030024 77 KRAHQHDV-YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 77 ~l~~~~gV-~v~~-GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (184)
++++++|| .++. |-..++|+.+- ...+.++||+++=++|++-..+.+.....++..+..|-+|.+
T Consensus 139 ~~L~~~gi~~lvi~G~~t~~CV~~T-------a~~a~~~g~~v~vv~Da~~~~~~~~~~~al~~~~~~g~~v~~ 205 (212)
T PTZ00331 139 QILKAHGVRRVFICGLAFDFCVLFT-------ALDAVKLGFKVVVLEDATRAVDPDAISKQRAELLEAGVILLT 205 (212)
T ss_pred HHHHHCCCCEEEEEEeccCHHHHHH-------HHHHHHCCCEEEEeCcCccCCCHHHHHHHHHHHHHCCCEEEe
Confidence 45678899 5554 76888888774 234678999999999999999999999999999999987753
No 149
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=77.55 E-value=27 Score=29.34 Aligned_cols=107 Identities=14% Similarity=0.252 Sum_probs=64.5
Q ss_pred HHHHHHhhccc-ccEEEeeCccccc-----cChhHHHHHHHHHHhCCceecC-ccHH-------HHHHHhCCchHHHHHH
Q 030024 43 LEDIFESMGQF-VDGLKFSGGSHSL-----MPKPFIEEVVKRAHQHDVYVST-GDWA-------EHLIRNGPSAFKEYVE 108 (184)
Q Consensus 43 leDlLe~ag~y-ID~lKfg~GTs~l-----~p~~~L~eKI~l~~~~gV~v~~-Gtlf-------E~al~qg~~~~~~yl~ 108 (184)
+++-++.+.++ +|.+-|-.+.... ++.+.+++--++++++||.++. +.+. +....+.-+.+.+.++
T Consensus 12 ~~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~h~p~~~nl~s~d~~~r~~~~~~l~~~i~ 91 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSVHAPYLINLASPDKEKVEKSIERLIDEIK 91 (273)
T ss_pred HhHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCceecCCCCCHHHHHHHHHHHHHHHH
Confidence 34556666666 7777666555533 3445688888889999998765 4331 1111121125788889
Q ss_pred HHHHcCCCEEEecCCcccCC--hhHHHHHHHHHH-----HCCCeEccc
Q 030024 109 DCKQVGFDTIELNVGSLEIP--EETLLRYVRLVK-----SAGLKAKPK 149 (184)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~--~~~r~~lI~~~~-----~~Gf~v~~E 149 (184)
.|+++|.+.|=+--|+..-. .+.+.++++.++ +.|.++.-|
T Consensus 92 ~A~~lGa~~vv~h~g~~~~~~~e~~~~~~~~~l~~l~~~~~gv~l~lE 139 (273)
T smart00518 92 RCEELGIKALVFHPGSYLKQSKEEALNRIIESLNEVIDETKGVVILLE 139 (273)
T ss_pred HHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHHHHhccCCcEEEEe
Confidence 99999999988877765221 233344443333 256666555
No 150
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=77.47 E-value=15 Score=29.96 Aligned_cols=97 Identities=15% Similarity=0.287 Sum_probs=62.7
Q ss_pred hhHHHHHHHhhcc-cccEEEee------------CccccccChhHHHHHHHHHHhC-CceecCc---cHHHHHHHhCCch
Q 030024 40 HNVLEDIFESMGQ-FVDGLKFS------------GGSHSLMPKPFIEEVVKRAHQH-DVYVSTG---DWAEHLIRNGPSA 102 (184)
Q Consensus 40 ~~~leDlLe~ag~-yID~lKfg------------~GTs~l~p~~~L~eKI~l~~~~-gV~v~~G---tlfE~al~qg~~~ 102 (184)
+..+.+.-+.+-+ ..|.|++- +|++.+-..+.+.+.++-.++. ++.+.-. +|-+. ..
T Consensus 66 ~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~------~~ 139 (231)
T cd02801 66 PETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDE------EE 139 (231)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCc------hH
Confidence 4444444444444 68999885 5666677778888999888764 2333332 34221 26
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccC--ChhHHHHHHHHHHHC
Q 030024 103 FKEYVEDCKQVGFDTIELNVGSLEI--PEETLLRYVRLVKSA 142 (184)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i--~~~~r~~lI~~~~~~ 142 (184)
..++++.+.+.|++.|.|+.++... ...-..++++++++.
T Consensus 140 ~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~ 181 (231)
T cd02801 140 TLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEA 181 (231)
T ss_pred HHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhC
Confidence 7788889999999999999987532 112234667777663
No 151
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=77.44 E-value=5.8 Score=33.68 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 030024 70 PFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (184)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISd 122 (184)
..-.+-++.|+++||.+.|| |--|+.-. .++|.+.|-+==
T Consensus 88 ~~~~~v~~~~~~~~i~~iPG~~TptEi~~A-------------~~~Ga~~vKlFP 129 (204)
T TIGR01182 88 GLTPELAKHAQDHGIPIIPGVATPSEIMLA-------------LELGITALKLFP 129 (204)
T ss_pred CCCHHHHHHHHHcCCcEECCCCCHHHHHHH-------------HHCCCCEEEECC
Confidence 34668889999999999999 88888754 457888877644
No 152
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=77.04 E-value=15 Score=35.91 Aligned_cols=96 Identities=15% Similarity=0.176 Sum_probs=72.3
Q ss_pred hHHHHHHHhhcc-cccEEEeeCccccccChhHHHHHHHHHHhCCceecCc---cHHHHHHHhCCchHHHHHHHHHHcCCC
Q 030024 41 NVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (184)
Q Consensus 41 ~~leDlLe~ag~-yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G---tlfE~al~qg~~~~~~yl~~~k~lGF~ 116 (184)
+-.+..++.|.+ -||.+.+....+-+ +-+++-|+.++++|..+... |+-- ...++.+-++.+.+.+.|.+
T Consensus 96 ~vv~~~v~~A~~~Gvd~irif~~lnd~---~n~~~~i~~ak~~G~~v~~~i~~t~~p---~~t~~~~~~~a~~l~~~Gad 169 (592)
T PRK09282 96 DVVEKFVEKAAENGIDIFRIFDALNDV---RNMEVAIKAAKKAGAHVQGTISYTTSP---VHTIEKYVELAKELEEMGCD 169 (592)
T ss_pred hhhHHHHHHHHHCCCCEEEEEEecChH---HHHHHHHHHHHHcCCEEEEEEEeccCC---CCCHHHHHHHHHHHHHcCCC
Confidence 345566666554 59999998766655 45899999999999877521 1100 12234666777788889999
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHC
Q 030024 117 TIELNVGSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~ 142 (184)
.|=|.|-.--+.+.+-.++|+.+++.
T Consensus 170 ~I~i~Dt~G~~~P~~~~~lv~~lk~~ 195 (592)
T PRK09282 170 SICIKDMAGLLTPYAAYELVKALKEE 195 (592)
T ss_pred EEEECCcCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999886
No 153
>PHA02754 hypothetical protein; Provisional
Probab=76.83 E-value=1.8 Score=30.65 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=18.3
Q ss_pred hhHHHHHHHhhcccccEEEe
Q 030024 40 HNVLEDIFESMGQFVDGLKF 59 (184)
Q Consensus 40 ~~~leDlLe~ag~yID~lKf 59 (184)
.++++|+|+.+|-|||-+|.
T Consensus 20 MRelkD~LSe~GiYi~RIka 39 (67)
T PHA02754 20 MRELKDILSEAGIYIDRIKA 39 (67)
T ss_pred HHHHHHHHhhCceEEEEEEE
Confidence 47899999999999999985
No 154
>PRK02227 hypothetical protein; Provisional
Probab=76.80 E-value=14 Score=32.44 Aligned_cols=105 Identities=16% Similarity=0.126 Sum_probs=68.5
Q ss_pred hHHHHHHHhhcccccEEEeeCccccccC--hhHHHHHHHHHHhC--CceecCccHHHHHHHhCCchHHHHHHHHHHcCCC
Q 030024 41 NVLEDIFESMGQFVDGLKFSGGSHSLMP--KPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (184)
Q Consensus 41 ~~leDlLe~ag~yID~lKfg~GTs~l~p--~~~L~eKI~l~~~~--gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~ 116 (184)
......+..+..=+||+|.|.--..-.. -+.++..+...+.+ +..+..-.|.+.--...+ .-.+-.+.+++.||+
T Consensus 68 ~~~~aa~~~a~~GvDyVKvGl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~-~~~~l~~~a~~aGf~ 146 (238)
T PRK02227 68 TISLAALGAAATGADYVKVGLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSV-SPLSLPAIAADAGFD 146 (238)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCC-ChHHHHHHHHHcCCC
Confidence 4667788888888999999952111111 12233334444433 445555566664322221 234677889999999
Q ss_pred EEEecCC-------cccCChhHHHHHHHHHHHCCCeE
Q 030024 117 TIELNVG-------SLEIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 117 ~IEISdG-------ti~i~~~~r~~lI~~~~~~Gf~v 146 (184)
.+=|... |--|+.++..+++++++++|+..
T Consensus 147 g~MlDTa~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~ 183 (238)
T PRK02227 147 GAMLDTAIKDGKSLFDHMDEEELAEFVAEARSHGLMS 183 (238)
T ss_pred EEEEecccCCCcchHhhCCHHHHHHHHHHHHHcccHh
Confidence 9988643 23799999999999999999875
No 155
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=76.76 E-value=9.4 Score=37.91 Aligned_cols=63 Identities=19% Similarity=0.158 Sum_probs=48.1
Q ss_pred ChhHHHHHHHHHHhCCceec--CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCe
Q 030024 68 PKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~--~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (184)
+++-.++-|+.+|++||.+. +|+--+.|..- ++++|++.+ .-.+.+++|.++|+..++.|-.
T Consensus 447 ~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~i-----------A~~lGI~~v-----~a~~~PedK~~~v~~lq~~g~~ 510 (675)
T TIGR01497 447 VKGGIKERFAQLRKMGIKTIMITGDNRLTAAAI-----------AAEAGVDDF-----IAEATPEDKIALIRQEQAEGKL 510 (675)
T ss_pred chhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH-----------HHHcCCCEE-----EcCCCHHHHHHHHHHHHHcCCe
Confidence 34558899999999999655 58765555443 788998754 3468899999999999999865
Q ss_pred E
Q 030024 146 A 146 (184)
Q Consensus 146 v 146 (184)
|
T Consensus 511 V 511 (675)
T TIGR01497 511 V 511 (675)
T ss_pred E
Confidence 4
No 156
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=76.65 E-value=7.2 Score=31.24 Aligned_cols=80 Identities=19% Similarity=0.181 Sum_probs=0.0
Q ss_pred CCCCceeEecC-CCCCCcchhHHHHHHHhhcccccEEEeeCccccccC-----hhHHHHHHHHHHhCCceecCccHHHHH
Q 030024 22 RRFGVTEMRSP-HYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMP-----KPFIEEVVKRAHQHDVYVSTGDWAEHL 95 (184)
Q Consensus 22 R~~GlT~V~Dk-G~s~~~g~~~leDlLe~ag~yID~lKfg~GTs~l~p-----~~~L~eKI~l~~~~gV~v~~GtlfE~a 95 (184)
|..|....+|- |. +...++-+.+.. +|+|||...-..-+. ...++..+.+++.+|+.|.-.+-
T Consensus 142 ~~~G~~l~ld~~g~----~~~~~~~l~~~~---~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gV---- 210 (240)
T cd01948 142 RALGVRIALDDFGT----GYSSLSYLKRLP---VDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGV---- 210 (240)
T ss_pred HHCCCeEEEeCCCC----cHhhHHHHHhCC---CCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEec----
Q ss_pred HHhCCchHHHHHHHHHHcCCCEE
Q 030024 96 IRNGPSAFKEYVEDCKQVGFDTI 118 (184)
Q Consensus 96 l~qg~~~~~~yl~~~k~lGF~~I 118 (184)
.-.+-++.++++|++.+
T Consensus 211 ------e~~~~~~~~~~~gi~~~ 227 (240)
T cd01948 211 ------ETEEQLELLRELGCDYV 227 (240)
T ss_pred ------CCHHHHHHHHHcCCCee
No 157
>PRK05927 hypothetical protein; Provisional
Probab=76.63 E-value=34 Score=31.08 Aligned_cols=98 Identities=15% Similarity=0.263 Sum_probs=70.7
Q ss_pred eeCccccccChhHHHHHHHHHHhC--CceecCccHHHHHH---HhCCchHHHHHHHHHHcCCC-----EEEecCCcc---
Q 030024 59 FSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLI---RNGPSAFKEYVEDCKQVGFD-----TIELNVGSL--- 125 (184)
Q Consensus 59 fg~GTs~l~p~~~L~eKI~l~~~~--gV~v~~GtlfE~al---~qg~~~~~~yl~~~k~lGF~-----~IEISdGti--- 125 (184)
|..|-..=.+-+.+.+-++..++. +|.+..=+-.|+++ .-| -..++.++.+++.|.+ ..|+++-.+
T Consensus 98 i~gG~~p~~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G-~~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~ 176 (350)
T PRK05927 98 LQGGVHPQLGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSG-ISTEQALERLWDAGQRTIPGGGAEILSERVRKI 176 (350)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcC-CCHHHHHHHHHHcCcccCCCCCchhCCHHHhhc
Confidence 556665545667788888888864 46444224555442 233 4689999999999998 899998543
Q ss_pred ----cCChhHHHHHHHHHHHCCCeEccccccccCCCCC
Q 030024 126 ----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDI 159 (184)
Q Consensus 126 ----~i~~~~r~~lI~~~~~~Gf~v~~EvG~K~~~~~~ 159 (184)
.++.++|++.|+.|++.|+++-+ |.-+|..++
T Consensus 177 ~~p~k~~~~~rl~~i~~A~~lGi~~~s--g~l~G~gEt 212 (350)
T PRK05927 177 ISPKKMGPDGWIQFHKLAHRLGFRSTA--TMMFGHVES 212 (350)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCcCc--eeEEeeCCC
Confidence 56779999999999999999877 666665443
No 158
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=76.61 E-value=11 Score=35.14 Aligned_cols=97 Identities=6% Similarity=0.015 Sum_probs=57.9
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHH-HHHHHHcCCC
Q 030024 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEY-VEDCKQVGFD 116 (184)
Q Consensus 39 g~~~leDlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~y-l~~~k~lGF~ 116 (184)
.+.....+++..+++ ++++|+|+--..-+..+.+++.-+...+ ..+..- .. .. ....| ++.+.+.|.+
T Consensus 183 ~~~~A~~i~~~l~~~~~~~iKvG~~L~~~~G~~iVk~Lr~~~~~--~~I~~D----LK-~~---Di~~~vv~~~a~aGAD 252 (391)
T PRK13307 183 DLEEVERVLSQLPKSDHIIIEAGTPLIKKFGLEVISKIREVRPD--AFIVAD----LK-TL---DTGNLEARMAADATAD 252 (391)
T ss_pred CHHHHHHHHHhcccccceEEEECHHHHHHhCHHHHHHHHHhCCC--CeEEEE----ec-cc---ChhhHHHHHHHhcCCC
Confidence 677888899999999 9999999877666666656555443211 111110 00 00 12233 4556667777
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHCCCeEcc
Q 030024 117 TIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (184)
.+-|.-- -+.+.-.+.++.+++.|.++.-
T Consensus 253 ~vTVH~e---a~~~ti~~ai~~akk~GikvgV 281 (391)
T PRK13307 253 AVVISGL---APISTIEKAIHEAQKTGIYSIL 281 (391)
T ss_pred EEEEecc---CCHHHHHHHHHHHHHcCCEEEE
Confidence 7777642 2344455677777777766544
No 159
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=76.45 E-value=18 Score=31.71 Aligned_cols=93 Identities=12% Similarity=0.131 Sum_probs=60.7
Q ss_pred HHHHHHHhhcccccEEEeeCccccccChhH---HHHHHHHHHhCCceecCc-cHHHHHHHhCCchHHHHHHHHH-HcCCC
Q 030024 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPF---IEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCK-QVGFD 116 (184)
Q Consensus 42 ~leDlLe~ag~yID~lKfg~GTs~l~p~~~---L~eKI~l~~~~gV~v~~G-tlfE~al~qg~~~~~~yl~~~k-~lGF~ 116 (184)
....+++..++|+..+|+|+.-..-+..+. |++.++.++++|.+|..- =+..+- +-+..|.+..- .+|+|
T Consensus 42 f~~~ii~~l~~~v~~vK~g~~lf~~~G~~gi~~l~~~~~~~~~~g~~VilD~K~~DIp-----nTv~~~a~a~~~~~g~D 116 (261)
T TIGR02127 42 FCLRIIDATAEYAAVVKPQVAFFERFGSEGFKALEEVIAHARSLGLPVLADVKRGDIG-----STASAYAKAWLGHLHAD 116 (261)
T ss_pred HHHHHHHhcCCcceEEecCHHHHHhcCHHHHHHHHHHHHHHHHCCCeEEEEeeccChH-----HHHHHHHHHHHhhcCCC
Confidence 457899999999999999997666554433 677779999999887663 333332 12334444443 67777
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHC
Q 030024 117 TIELNVGSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~ 142 (184)
+|-|+- -+..+....+++.+.+.
T Consensus 117 ~vTvh~---~~G~d~l~~~~~~~~~~ 139 (261)
T TIGR02127 117 ALTVSP---YLGLDSLRPFLEYARAN 139 (261)
T ss_pred EEEECC---cCCHHHHHHHHHHHhhc
Confidence 777773 44455555555555443
No 160
>PRK00915 2-isopropylmalate synthase; Validated
Probab=76.37 E-value=5.2 Score=38.09 Aligned_cols=87 Identities=16% Similarity=0.068 Sum_probs=66.9
Q ss_pred ccEEEeeCccccccChh-----------HHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 030024 54 VDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (184)
Q Consensus 54 ID~lKfg~GTs~l~p~~-----------~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISd 122 (184)
++.+-+...+|-++-+. .+.+-|+.++++|..|..+ +|.+....++.+-++++.+.+.|.+.|-+.|
T Consensus 93 ~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~--~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~D 170 (513)
T PRK00915 93 APRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFS--AEDATRTDLDFLCRVVEAAIDAGATTINIPD 170 (513)
T ss_pred CCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE--eCCCCCCCHHHHHHHHHHHHHcCCCEEEEcc
Confidence 45666666666554322 2478899999999988765 2233334455788888899999999999999
Q ss_pred CcccCChhHHHHHHHHHHHC
Q 030024 123 GSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~ 142 (184)
-.--+.+++-.++|+.++++
T Consensus 171 TvG~~~P~~~~~~i~~l~~~ 190 (513)
T PRK00915 171 TVGYTTPEEFGELIKTLRER 190 (513)
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999876
No 161
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=76.23 E-value=38 Score=29.31 Aligned_cols=93 Identities=13% Similarity=0.087 Sum_probs=62.6
Q ss_pred HHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhC-CceecCcc----HHHHHHHh--CC------------ch
Q 030024 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGD----WAEHLIRN--GP------------SA 102 (184)
Q Consensus 42 ~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~v~~Gt----lfE~al~q--g~------------~~ 102 (184)
..+.+++.-+++|| +|.+...+-+++.+++.+...++. +++++-.| -+|.|+.. |. ++
T Consensus 31 ~A~~~~~~GAdiID---IG~~~~~~~~~ee~~r~v~~i~~~~~~piSIDT~~~~v~e~aL~~~~G~~iINsIs~~~~~e~ 107 (252)
T cd00740 31 VARQQVEGGAQILD---LNVDYGGLDGVSAMKWLLNLLATEPTVPLMLDSTNWEVIEAGLKCCQGKCVVNSINLEDGEER 107 (252)
T ss_pred HHHHHHHCCCCEEE---ECCCCCCCCHHHHHHHHHHHHHHhcCCcEEeeCCcHHHHHHHHhhCCCCcEEEeCCCCCCccc
Confidence 44555666677777 588776566667777777778776 99999864 68888874 21 24
Q ss_pred HHHHHHHHHHcCCCEEEecCC--cccCChhHHHHHHH
Q 030024 103 FKEYVEDCKQVGFDTIELNVG--SLEIPEETLLRYVR 137 (184)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdG--ti~i~~~~r~~lI~ 137 (184)
+++.++.+++.|...|=+... -+..+.+.|.++.+
T Consensus 108 ~~~~~~~~~~~~~~vV~m~~~~~g~p~t~~~~~~~~~ 144 (252)
T cd00740 108 FLKVARLAKEHGAAVVVLAFDEQGQAKTRDKKVEIAE 144 (252)
T ss_pred cHHHHHHHHHhCCCEEEeccCCCCCCCCHHHHHHHHH
Confidence 678889999999999987752 13444444444433
No 162
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=76.14 E-value=4.5 Score=37.11 Aligned_cols=81 Identities=21% Similarity=0.183 Sum_probs=44.1
Q ss_pred CCceecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC----ChhHHHHHHHHHHHCCCeEcccccc----
Q 030024 82 HDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI----PEETLLRYVRLVKSAGLKAKPKFAV---- 152 (184)
Q Consensus 82 ~gV~v~~G-tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i----~~~~r~~lI~~~~~~Gf~v~~EvG~---- 152 (184)
.||-|||| ..+| ...+|++.++++||+.|=.|=-..+= -.+...++++.|++.||+|..-|+-
T Consensus 2 lGiSvY~~~~~~~--------~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~ 73 (357)
T PF05913_consen 2 LGISVYPGQSSFE--------ENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLK 73 (357)
T ss_dssp EEEEE-CCCS-HH--------HHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHH
T ss_pred cEEEEeCCCCCHH--------HHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHH
Confidence 36677777 4332 45788899999998888766322221 1234457788888999988554443
Q ss_pred ccCCCCCCchhhhhcccc
Q 030024 153 MFNKSDIPSDRDRAFGAY 170 (184)
Q Consensus 153 K~~~~~~~~~~~~a~ga~ 170 (184)
+++.+.-+++.+..+|..
T Consensus 74 ~lg~~~~dl~~~~~lGi~ 91 (357)
T PF05913_consen 74 KLGISYDDLSFFKELGID 91 (357)
T ss_dssp TTT-BTTBTHHHHHHT-S
T ss_pred HcCCCHHHHHHHHHcCCC
Confidence 333333344455445544
No 163
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=75.90 E-value=7 Score=34.49 Aligned_cols=67 Identities=9% Similarity=0.032 Sum_probs=43.8
Q ss_pred ccChhHHHHHHHHHHhCCceec---CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 030024 66 LMPKPFIEEVVKRAHQHDVYVS---TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 66 l~p~~~L~eKI~l~~~~gV~v~---~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (184)
+++-+.|++-|+....++..+. .=.=|++ .+ + -|+.-+--..+.++..++++.|+++
T Consensus 13 ~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~---~~------~-----------p~~~~~~~~yT~~ei~ei~~yA~~~ 72 (301)
T cd06565 13 VPKVSYLKKLLRLLALLGANGLLLYYEDTFPY---EG------E-----------PEVGRMRGAYTKEEIREIDDYAAEL 72 (301)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEecceec---CC------C-----------cccccCCCCcCHHHHHHHHHHHHHc
Confidence 4556778888888887777432 2111111 11 0 1222223358999999999999999
Q ss_pred CCeEcccccc
Q 030024 143 GLKAKPKFAV 152 (184)
Q Consensus 143 Gf~v~~EvG~ 152 (184)
|..|+||+-.
T Consensus 73 gI~vIPeid~ 82 (301)
T cd06565 73 GIEVIPLIQT 82 (301)
T ss_pred CCEEEecCCC
Confidence 9999999865
No 164
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=75.77 E-value=4.3 Score=35.86 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=32.2
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcc--cCChhHHHH-HHHHHHHCCCeEcc
Q 030024 101 SAFKEYVEDCKQVGFDTIELNVGSL--EIPEETLLR-YVRLVKSAGLKAKP 148 (184)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti--~i~~~~r~~-lI~~~~~~Gf~v~~ 148 (184)
-.+++|+..||++||+.|||-|.-- +|....-.. +-..+.+.|+...+
T Consensus 17 l~v~affa~ak~lg~s~VeiRndl~~~~I~dg~p~a~vka~Aek~Gl~IvS 67 (272)
T COG4130 17 LSVEAFFALAKRLGLSKVEIRNDLPSNAIADGTPAAEVKALAEKAGLTIVS 67 (272)
T ss_pred CCHHHHHHHHHHcCcceeEEecCCCcccccCCCCHHHHHHHHHHcCcEEEE
Confidence 3699999999999999999977533 333333222 23345566877644
No 165
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=75.60 E-value=7.5 Score=37.71 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCCEEEecCCc----------c-----cC-----ChhHHHHHHHHHHHCCCeEcccccccc
Q 030024 104 KEYVEDCKQVGFDTIELNVGS----------L-----EI-----PEETLLRYVRLVKSAGLKAKPKFAVMF 154 (184)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGt----------i-----~i-----~~~~r~~lI~~~~~~Gf~v~~EvG~K~ 154 (184)
++.++++++||+++||++-=+ - .+ +.++..++|+.+.++|++|+-.+=..+
T Consensus 160 ~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH 230 (613)
T TIGR01515 160 DQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGH 230 (613)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccC
Confidence 445588899999999995311 1 11 246888999999999999977655443
No 166
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=75.39 E-value=20 Score=33.99 Aligned_cols=119 Identities=17% Similarity=0.153 Sum_probs=75.6
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccc-cEEEeeCcccc-ccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C-
Q 030024 27 TEMRSPHYTLSSSHNVLEDIFESMGQFV-DGLKFSGGSHS-LMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G- 99 (184)
Q Consensus 27 T~V~DkG~s~~~g~~~leDlLe~ag~yI-D~lKfg~GTs~-l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g- 99 (184)
|..++=|-+..-....++++++..-..+ +.-.+.-=|.- .-|..+-.++++.++++|| .++.| ++=+..+.. |
T Consensus 221 tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR 300 (488)
T PRK08207 221 TIYFGGGTPTSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKAIGR 300 (488)
T ss_pred EEEEeCCCccCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCC
Confidence 4555555333225778999999876654 32111111111 2455667899999999999 56667 555444422 2
Q ss_pred ---CchHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHCCCe
Q 030024 100 ---PSAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 100 ---~~~~~~yl~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (184)
.+.+.+-++.+++.||+.| -+--|.-.-+.++..+-++.+.+.+..
T Consensus 301 ~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd 351 (488)
T PRK08207 301 HHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPE 351 (488)
T ss_pred CCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcC
Confidence 1346667788899999744 455666667788888888888887754
No 167
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=75.22 E-value=5.3 Score=30.40 Aligned_cols=41 Identities=17% Similarity=0.345 Sum_probs=32.7
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEc
Q 030024 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (184)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~ 147 (184)
+.+.+.+++|.++|+..|=+-.| ..-.++++.++++|+++.
T Consensus 66 ~~~~~~v~~~~~~g~~~v~~~~g------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 66 DKVPEIVDEAAALGVKAVWLQPG------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp HHHHHHHHHHHHHT-SEEEE-TT------S--HHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEcc------hHHHHHHHHHHHcCCEEE
Confidence 48999999999999999999888 555689999999999987
No 168
>PRK10785 maltodextrin glucosidase; Provisional
Probab=75.21 E-value=7.1 Score=37.76 Aligned_cols=54 Identities=17% Similarity=0.173 Sum_probs=40.3
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc-------------cCC-----hhHHHHHHHHHHHCCCeEccccccccCC
Q 030024 103 FKEYVEDCKQVGFDTIELNVGSL-------------EIP-----EETLLRYVRLVKSAGLKAKPKFAVMFNK 156 (184)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti-------------~i~-----~~~r~~lI~~~~~~Gf~v~~EvG~K~~~ 156 (184)
+.+=|+++++||+++|.++==+- .|+ .++..+||+.|.++|++|+-.+=..+.+
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~ 252 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTG 252 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCC
Confidence 55568899999999999975332 222 3789999999999999997655444433
No 169
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=74.96 E-value=7.6 Score=36.21 Aligned_cols=52 Identities=15% Similarity=0.270 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc-------------cC-----------------ChhHHHHHHHHHHHCCCeEcccccc
Q 030024 103 FKEYVEDCKQVGFDTIELNVGSL-------------EI-----------------PEETLLRYVRLVKSAGLKAKPKFAV 152 (184)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti-------------~i-----------------~~~~r~~lI~~~~~~Gf~v~~EvG~ 152 (184)
+.+=++++++|||++|.||==+- +. +.++..+||+.+.++|++|+--+=.
T Consensus 24 I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D~V~ 103 (479)
T PRK09441 24 LAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYADVVL 103 (479)
T ss_pred HHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 44557788899999998874221 11 3678999999999999998655433
Q ss_pred cc
Q 030024 153 MF 154 (184)
Q Consensus 153 K~ 154 (184)
.+
T Consensus 104 NH 105 (479)
T PRK09441 104 NH 105 (479)
T ss_pred cc
Confidence 33
No 170
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=74.93 E-value=20 Score=29.85 Aligned_cols=77 Identities=14% Similarity=0.127 Sum_probs=53.5
Q ss_pred HHHHHHHHHhCCceecC-c----cHHH-----------HHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--CChhH--
Q 030024 72 IEEVVKRAHQHDVYVST-G----DWAE-----------HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--IPEET-- 131 (184)
Q Consensus 72 L~eKI~l~~~~gV~v~~-G----tlfE-----------~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~--i~~~~-- 131 (184)
+.+.-+++.++|+.++. + .|.. ..-.. +.+++.++.|+++|...|-+-.|... .+.++
T Consensus 41 ~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~ 118 (254)
T TIGR03234 41 AEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFR--EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEAR 118 (254)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHH--HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHH
Confidence 77778899999998763 2 1210 00011 26888999999999999998888653 22222
Q ss_pred ------HHHHHHHHHHCCCeEcccc
Q 030024 132 ------LLRYVRLVKSAGLKAKPKF 150 (184)
Q Consensus 132 ------r~~lI~~~~~~Gf~v~~Ev 150 (184)
..++.+.|++.|.++.-|.
T Consensus 119 ~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 119 ATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3566778889999988885
No 171
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=74.86 E-value=30 Score=29.00 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=51.6
Q ss_pred HHHHHHHHHhCCceec----C-ccHHH------------HHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--CChhH-
Q 030024 72 IEEVVKRAHQHDVYVS----T-GDWAE------------HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--IPEET- 131 (184)
Q Consensus 72 L~eKI~l~~~~gV~v~----~-GtlfE------------~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~--i~~~~- 131 (184)
+++.-+++.++|+.++ | |+|.. .... . .+++.++.|+++|.+.|-+--|... .+.++
T Consensus 42 ~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~ 118 (258)
T PRK09997 42 IEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEEFR-D--GVAAAIRYARALGNKKINCLVGKTPAGFSSEQI 118 (258)
T ss_pred HHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcHHHHH-H--HHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHH
Confidence 7777778889999875 2 44432 1111 2 6889999999999999988666542 22222
Q ss_pred H-------HHHHHHHHHCCCeEcccc
Q 030024 132 L-------LRYVRLVKSAGLKAKPKF 150 (184)
Q Consensus 132 r-------~~lI~~~~~~Gf~v~~Ev 150 (184)
+ .++.+.+++.|+++--|.
T Consensus 119 ~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 119 HATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 2 344567778899887774
No 172
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=74.68 E-value=8.1 Score=37.08 Aligned_cols=87 Identities=10% Similarity=0.007 Sum_probs=67.6
Q ss_pred ccEEEeeCccccccChh-----------HHHHHHHHHHhCCce-ecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 030024 54 VDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVY-VSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (184)
Q Consensus 54 ID~lKfg~GTs~l~p~~-----------~L~eKI~l~~~~gV~-v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEIS 121 (184)
+|.+-+-..+|-++-+. .+.+-|+.++++|.. |..|. |.+-.-+++.+.++++.+.+.|.+.|-|.
T Consensus 182 ~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~--EDa~Rtd~efl~~~~~~a~~~Gad~I~l~ 259 (503)
T PLN03228 182 RPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGC--EDGGRSDKEFLCKILGEAIKAGATSVGIA 259 (503)
T ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecc--ccccccCHHHHHHHHHHHHhcCCCEEEEe
Confidence 35677777777666332 247788999999984 55553 44444555577889999999999999999
Q ss_pred CCcccCChhHHHHHHHHHHHC
Q 030024 122 VGSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 122 dGti~i~~~~r~~lI~~~~~~ 142 (184)
|-.--+.+.+-.++|+.+++.
T Consensus 260 DTvG~~tP~~v~~lV~~l~~~ 280 (503)
T PLN03228 260 DTVGINMPHEFGELVTYVKAN 280 (503)
T ss_pred cCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999875
No 173
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=74.65 E-value=19 Score=30.21 Aligned_cols=82 Identities=18% Similarity=0.122 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHhCCceecC---ccH--H------HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc--cC-Ch-----
Q 030024 69 KPFIEEVVKRAHQHDVYVST---GDW--A------EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL--EI-PE----- 129 (184)
Q Consensus 69 ~~~L~eKI~l~~~~gV~v~~---Gtl--f------E~al~qg~~~~~~yl~~~k~lGF~~IEISdGti--~i-~~----- 129 (184)
...+++--+.++++||.++. ++. + +....+.-+.+++.++.|+.||.+.|=+..+.. .- +.
T Consensus 51 ~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~ 130 (284)
T PRK13210 51 KEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR 130 (284)
T ss_pred HHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH
Confidence 34578888899999997752 210 1 111111112578889999999999997753221 11 11
Q ss_pred --hHHHHHHHHHHHCCCeEcccc
Q 030024 130 --ETLLRYVRLVKSAGLKAKPKF 150 (184)
Q Consensus 130 --~~r~~lI~~~~~~Gf~v~~Ev 150 (184)
+...++.+.+++.|+++.-|.
T Consensus 131 ~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 131 FIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEe
Confidence 224567788888898887775
No 174
>PRK07360 FO synthase subunit 2; Reviewed
Probab=74.49 E-value=44 Score=30.26 Aligned_cols=100 Identities=17% Similarity=0.318 Sum_probs=65.2
Q ss_pred ccEEEeeCccccccC-hhHHHHHHHHHHhC--CceecCccHHHHHH---HhCCchHHHHHHHHHHcCCCEE-EecCC---
Q 030024 54 VDGLKFSGGSHSLMP-KPFIEEVVKRAHQH--DVYVSTGDWAEHLI---RNGPSAFKEYVEDCKQVGFDTI-ELNVG--- 123 (184)
Q Consensus 54 ID~lKfg~GTs~l~p-~~~L~eKI~l~~~~--gV~v~~GtlfE~al---~qg~~~~~~yl~~~k~lGF~~I-EISdG--- 123 (184)
+.-+=+-.|...-.+ -+.+.+.++..++. +|.++.=+..|+.+ ..| ...++.++.+++.|.+.+ |-|.-
T Consensus 108 ~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G-~~~~e~l~~LkeAGld~~~~t~~e~l~ 186 (371)
T PRK07360 108 ATEVCIQGGLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDG-LSYEEVLKALKDAGLDSMPGTAAEILV 186 (371)
T ss_pred CCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcC-CCHHHHHHHHHHcCCCcCCCcchhhcc
Confidence 666666666544443 45677888888874 45444325555544 234 346788999999999988 33321
Q ss_pred -------cc-cCChhHHHHHHHHHHHCCCeEccccccccCC
Q 030024 124 -------SL-EIPEETLLRYVRLVKSAGLKAKPKFAVMFNK 156 (184)
Q Consensus 124 -------ti-~i~~~~r~~lI~~~~~~Gf~v~~EvG~K~~~ 156 (184)
+- ..+.++|.+.++.+++.|+++-+ |.-++.
T Consensus 187 ~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~s--g~i~G~ 225 (371)
T PRK07360 187 DEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTS--TMMYGH 225 (371)
T ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcee--eEEeeC
Confidence 11 35778999999999999999855 444443
No 175
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=74.34 E-value=9.7 Score=32.34 Aligned_cols=112 Identities=18% Similarity=0.176 Sum_probs=72.3
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCce----ecCc-----cHHHHH
Q 030024 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY----VSTG-----DWAEHL 95 (184)
Q Consensus 25 GlT~V~DkG~s~~~g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~----v~~G-----tlfE~a 95 (184)
++....|=|+ + .+..++.+|+.-.+ |.+.||+++.+++.+++.++.+.+. |. +.-| +|-+
T Consensus 75 ~~pv~vgGGi--r-s~edv~~~l~~Ga~-----kvviGs~~l~~p~l~~~i~~~~~~~-i~vsld~~~~~v~~~Gw~~-- 143 (241)
T PRK14024 75 DVKVELSGGI--R-DDESLEAALATGCA-----RVNIGTAALENPEWCARVIAEHGDR-VAVGLDVRGHTLAARGWTR-- 143 (241)
T ss_pred CCCEEEcCCC--C-CHHHHHHHHHCCCC-----EEEECchHhCCHHHHHHHHHHhhhh-EEEEEEEeccEeccCCeee--
Confidence 4555566665 4 55666677775333 7899999999999999999888654 32 2112 4543
Q ss_pred HHhCCchHHHHHHHHHHcCCCEEEecCC----cccCChhHHHHHHHHHHHC-CCeEccccccc
Q 030024 96 IRNGPSAFKEYVEDCKQVGFDTIELNVG----SLEIPEETLLRYVRLVKSA-GLKAKPKFAVM 153 (184)
Q Consensus 96 l~qg~~~~~~yl~~~k~lGF~~IEISdG----ti~i~~~~r~~lI~~~~~~-Gf~v~~EvG~K 153 (184)
... ...++++.+.+.|++.|=+-+= +..=+ + .++|+.+++. .+.|+.-=|..
T Consensus 144 -~~~--~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~--d-~~~i~~i~~~~~ipviasGGi~ 200 (241)
T PRK14024 144 -DGG--DLWEVLERLDSAGCSRYVVTDVTKDGTLTGP--N-LELLREVCARTDAPVVASGGVS 200 (241)
T ss_pred -cCc--cHHHHHHHHHhcCCCEEEEEeecCCCCccCC--C-HHHHHHHHhhCCCCEEEeCCCC
Confidence 222 6788999999999998877543 33222 3 4666666664 55566544443
No 176
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=74.32 E-value=21 Score=30.99 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=53.2
Q ss_pred HHHHHHHHHhC-CceecCcc----HHHHHHHhCCch--------HHHHHHHHHHcCCCEEEecCCcccCC----------
Q 030024 72 IEEVVKRAHQH-DVYVSTGD----WAEHLIRNGPSA--------FKEYVEDCKQVGFDTIELNVGSLEIP---------- 128 (184)
Q Consensus 72 L~eKI~l~~~~-gV~v~~Gt----lfE~al~qg~~~--------~~~yl~~~k~lGF~~IEISdGti~i~---------- 128 (184)
|+..|+.+++. +++++--| -+|.|+..|.+- .++.+..+++.|..+|=+.+.-+.-+
T Consensus 63 l~~~v~~~~~~~~~plsiDT~~~~vi~~al~~G~~iINsis~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~ 142 (257)
T TIGR01496 63 VVPVIKALRDQPDVPISVDTYRAEVARAALEAGADIINDVSGGQDPAMLEVAAEYGVPLVLMHMRGTPRTMQENPHYEDV 142 (257)
T ss_pred HHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHcCCCEEEECCCCCCchhHHHHHHcCCcEEEEeCCCCCcccccCCCcccH
Confidence 88888999887 99998743 788888776421 45688999999999998876433221
Q ss_pred hhH----HHHHHHHHHHCCCe
Q 030024 129 EET----LLRYVRLVKSAGLK 145 (184)
Q Consensus 129 ~~~----r~~lI~~~~~~Gf~ 145 (184)
.++ ..+.|+++.+.|++
T Consensus 143 ~~~~~~~~~~~i~~~~~~Gi~ 163 (257)
T TIGR01496 143 VEEVLRFLEARAEELVAAGVA 163 (257)
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 122 34667778999983
No 177
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=74.26 E-value=4.6 Score=35.42 Aligned_cols=72 Identities=25% Similarity=0.327 Sum_probs=46.3
Q ss_pred cChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh-----------hHHHHH
Q 030024 67 MPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE-----------ETLLRY 135 (184)
Q Consensus 67 ~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~-----------~~r~~l 135 (184)
-..+.|++.|+.+|++||.|+. |+ + --.+-++.++++|.++||+-.|...-.. +.....
T Consensus 108 ~~~~~l~~~i~~L~~~gIrvSL--Fi------D--P~~~qi~~A~~~Gad~VELhTG~yA~a~~~~~~~~~ell~~l~~a 177 (239)
T PF03740_consen 108 GNRDRLKPVIKRLKDAGIRVSL--FI------D--PDPEQIEAAKELGADRVELHTGPYANAFDDAEEAEEELLERLRDA 177 (239)
T ss_dssp GGHHHHHHHHHHHHHTT-EEEE--EE---------S-HHHHHHHHHTT-SEEEEETHHHHHHSSHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCEEEE--Ee------C--CCHHHHHHHHHcCCCEEEEehhHhhhhcCCHHHHHHHHHHHHHHH
Confidence 3457799999999999999985 11 1 1133367789999999999998763221 112233
Q ss_pred HHHHHHCCCeEcc
Q 030024 136 VRLVKSAGLKAKP 148 (184)
Q Consensus 136 I~~~~~~Gf~v~~ 148 (184)
-+.+.+.|+.|..
T Consensus 178 a~~a~~lGL~VnA 190 (239)
T PF03740_consen 178 ARYAHELGLGVNA 190 (239)
T ss_dssp HHHHHHTT-EEEE
T ss_pred HHHHHHcCCEEec
Confidence 4566788998865
No 178
>PRK12677 xylose isomerase; Provisional
Probab=74.19 E-value=6.6 Score=36.12 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---cCChhH----HHHHHHHHHHCCCeEc
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGSL---EIPEET----LLRYVRLVKSAGLKAK 147 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti---~i~~~~----r~~lI~~~~~~Gf~v~ 147 (184)
...+.++.++++||+.||+.+..+ ..+..+ ..++-+.+++.|++|-
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~ 84 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVP 84 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeE
Confidence 578888899999999999986533 223322 4567777889999964
No 179
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=74.08 E-value=23 Score=32.05 Aligned_cols=113 Identities=13% Similarity=0.232 Sum_probs=77.3
Q ss_pred eEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C----
Q 030024 28 EMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G---- 99 (184)
Q Consensus 28 ~V~DkG~s~~~g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g---- 99 (184)
.-++-|-+..-.+..++.+++..... +..-+.+ -.-|..+-.++++.++++|| .++.| ++-+..+.. |
T Consensus 62 iy~GGGTPs~l~~~~l~~ll~~i~~~-~~~eit~---E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~ 137 (370)
T PRK06294 62 VFFGGGTPSLVPPALIQDILKTLEAP-HATEITL---EANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTHS 137 (370)
T ss_pred EEECCCccccCCHHHHHHHHHHHHhC-CCCeEEE---EeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCC
Confidence 33444533332667888888887554 3344544 34566666899999999999 78888 677766643 2
Q ss_pred CchHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHCCC
Q 030024 100 PSAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGL 144 (184)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~Gf 144 (184)
.+.+.+-++.+++.||+.| -+--|.=.=+.+++.+-++.+.+.+.
T Consensus 138 ~~~~~~ai~~~~~~g~~~v~~Dli~GlPgqt~~~~~~~l~~~~~l~~ 184 (370)
T PRK06294 138 SSKAIDAVQECSEHGFSNLSIDLIYGLPTQSLSDFIVDLHQAITLPI 184 (370)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHccCC
Confidence 1246667778899999854 44566556677778888888888774
No 180
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=73.91 E-value=10 Score=31.91 Aligned_cols=45 Identities=16% Similarity=0.310 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc------cCChhHHHHHHHHHHHCCCeE
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGSL------EIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti------~i~~~~r~~lI~~~~~~Gf~v 146 (184)
.+.+.++++.++||+.||+.-+.. .++.+...++.+.+++.|+++
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~l 61 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDV 61 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 345556666677777777654433 345555666666666666654
No 181
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=73.47 E-value=14 Score=32.75 Aligned_cols=74 Identities=20% Similarity=0.297 Sum_probs=46.3
Q ss_pred ccChhHHHHHHHHHHhCC-c-eecCccHHHHHHHhCCch-HHHHHHHHHHcCCC-EEEecCCcccCC-------------
Q 030024 66 LMPKPFIEEVVKRAHQHD-V-YVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFD-TIELNVGSLEIP------------- 128 (184)
Q Consensus 66 l~p~~~L~eKI~l~~~~g-V-~v~~GtlfE~al~qg~~~-~~~yl~~~k~lGF~-~IEISdGti~i~------------- 128 (184)
..|.+.+++..+.+++.+ + .+...+ .|+. -++.++.+++.|++ .|+| |.-+.+
T Consensus 84 ~~~~~~~~~i~~~l~~~~~~~~i~~es--------rpd~i~~e~L~~l~~aG~~~~v~i--G~ES~~d~~L~~~inKg~t 153 (313)
T TIGR01210 84 EVPKETRNYIFEKIAQRDNLKEVVVES--------RPEFIDEEKLEELRKIGVNVEVAV--GLETANDRIREKSINKGST 153 (313)
T ss_pred cCCHHHHHHHHHHHHhcCCcceEEEEe--------CCCcCCHHHHHHHHHcCCCEEEEE--ecCcCCHHHHHHhhCCCCC
Confidence 566777788887877765 3 222111 1112 26777888889987 4655 333333
Q ss_pred hhHHHHHHHHHHHCCCeEccc
Q 030024 129 EETLLRYVRLVKSAGLKAKPK 149 (184)
Q Consensus 129 ~~~r~~lI~~~~~~Gf~v~~E 149 (184)
.++-.+.++.+++.|+.|+.=
T Consensus 154 ~~~~~~ai~~~~~~Gi~v~~~ 174 (313)
T TIGR01210 154 FEDFIRAAELARKYGAGVKAY 174 (313)
T ss_pred HHHHHHHHHHHHHcCCcEEEE
Confidence 344457889999999987543
No 182
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=73.32 E-value=8.5 Score=38.82 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCCEEEecCCccc--------------------CChhHHHHHHHHHHHCCCeEccccccccC
Q 030024 104 KEYVEDCKQVGFDTIELNVGSLE--------------------IPEETLLRYVRLVKSAGLKAKPKFAVMFN 155 (184)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~--------------------i~~~~r~~lI~~~~~~Gf~v~~EvG~K~~ 155 (184)
++-+.++++|||++|+++-=+-. =+.++..++|+.+.++|++|+-.+=..+.
T Consensus 254 ~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~ 325 (758)
T PLN02447 254 DDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHA 325 (758)
T ss_pred HHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 44688999999999998742110 12478889999999999999766554443
No 183
>PRK06846 putative deaminase; Validated
Probab=73.14 E-value=26 Score=31.65 Aligned_cols=93 Identities=12% Similarity=0.137 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHhCCceecC--c-cHHHHHHHhCCchHHHHHHHHHHcCCCE-EEecCCcc--cCChhHHHHHHHHHHHCC
Q 030024 70 PFIEEVVKRAHQHDVYVST--G-DWAEHLIRNGPSAFKEYVEDCKQVGFDT-IELNVGSL--EIPEETLLRYVRLVKSAG 143 (184)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~--G-tlfE~al~qg~~~~~~yl~~~k~lGF~~-IEISdGti--~i~~~~r~~lI~~~~~~G 143 (184)
+.|++-.+++++||+++.. . +.-|. + ..+++.++.+++.|+.. +-++-..- .++.++..++|+++++.|
T Consensus 206 ~~l~~~~~lA~~~g~~v~~Hv~e~~~~~---~--~~~~~~~~~~~~~gl~~~v~~~H~~~l~~~~~~e~~~li~~la~~g 280 (410)
T PRK06846 206 KSLDTMFQIAVDFNKGVDIHLHDTGPLG---V--ATIKYLVETTEEAQWKGKVTISHAFALGDLNEEEVEELAERLAAQG 280 (410)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCCChh---H--HHHHHHHHHHHHhCCCCCEEEEecchhhcCCHHHHHHHHHHHHHcC
Confidence 4588889999999987765 2 22121 1 14566778888888732 44444432 468888889999999999
Q ss_pred CeEccccccccCCCCCCchhhhhccc
Q 030024 144 LKAKPKFAVMFNKSDIPSDRDRAFGA 169 (184)
Q Consensus 144 f~v~~EvG~K~~~~~~~~~~~~a~ga 169 (184)
..|.+= -.-+..-.++..+.+.|.
T Consensus 281 ~~v~~~--~~~~~g~~p~~~l~~~Gv 304 (410)
T PRK06846 281 ISITST--VPIGRLHMPIPLLHDKGV 304 (410)
T ss_pred CeEEEe--CCCCCCCCCHHHHHhCCC
Confidence 887541 111222345666665554
No 184
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=73.14 E-value=4.4 Score=41.67 Aligned_cols=69 Identities=17% Similarity=0.353 Sum_probs=55.9
Q ss_pred HHHHHHHHHhCCc-eecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccc
Q 030024 72 IEEVVKRAHQHDV-YVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPK 149 (184)
Q Consensus 72 L~eKI~l~~~~gV-~v~~G-tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E 149 (184)
+.+.|++++++|+ -++|| ||+ +.+ .+|-+.|.+-|+..|==+--.+++ ..+|.+....|.+.|+.|+|.
T Consensus 69 IdeII~iAk~~gaDaIhPGYGfL----SEn----~efA~~c~eaGI~FIGP~~e~ld~-~GdKv~Ar~~A~~agvPvipg 139 (1149)
T COG1038 69 IDEIIRIAKRSGADAIHPGYGFL----SEN----PEFARACAEAGITFIGPKPEVLDM-LGDKVKARNAAIKAGVPVIPG 139 (1149)
T ss_pred HHHHHHHHHHcCCCeecCCcccc----cCC----HHHHHHHHHcCCEEeCCCHHHHHH-hccHHHHHHHHHHcCCCccCC
Confidence 8899999999999 78899 864 555 688999999999988666555554 345678888899999999983
No 185
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=72.79 E-value=8 Score=37.35 Aligned_cols=54 Identities=9% Similarity=0.108 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc------------------ccC-----------C-------hhHHHHHHHHHHHCCCe
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGS------------------LEI-----------P-------EETLLRYVRLVKSAGLK 145 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt------------------i~i-----------~-------~~~r~~lI~~~~~~Gf~ 145 (184)
.+.+-|+++++||+++||++==+ -.. + .++..++|+.+.++|++
T Consensus 165 g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~ 244 (605)
T TIGR02104 165 GVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIR 244 (605)
T ss_pred cchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCE
Confidence 45677899999999999984221 111 1 37899999999999999
Q ss_pred EccccccccC
Q 030024 146 AKPKFAVMFN 155 (184)
Q Consensus 146 v~~EvG~K~~ 155 (184)
|+-.+=..+.
T Consensus 245 VilDvV~NH~ 254 (605)
T TIGR02104 245 VIMDVVYNHT 254 (605)
T ss_pred EEEEEEcCCc
Confidence 9776555443
No 186
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=72.75 E-value=6 Score=35.49 Aligned_cols=62 Identities=19% Similarity=0.351 Sum_probs=41.5
Q ss_pred CCCCCceeEecCCCCCC------------cchhHHHHHHHhhcccccEEEeeCccccccChhHH--HHHHHHHHhCCcee
Q 030024 21 PRRFGVTEMRSPHYTLS------------SSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFI--EEVVKRAHQHDVYV 86 (184)
Q Consensus 21 PR~~GlT~V~DkG~s~~------------~g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L--~eKI~l~~~~gV~v 86 (184)
||-.|+ ++-+|.++.. +.+..++.+++.++ |+||+= .+-|+ .. ++.|+.++++|+.|
T Consensus 118 ~~~~g~-hleGP~~~~~~~g~h~~~~~~~~~~~~~~~~~~~~~---~~ik~~----tlaPE-~~~~~~~i~~~~~~gi~v 188 (374)
T cd00854 118 AEILGI-HLEGPFISPEKKGAHPPEYLRAPDPEELKKWLEAAG---GLIKLV----TLAPE-LDGALELIRYLVERGIIV 188 (374)
T ss_pred CeeEEE-eeecCccCcccCCCCCHHHcCCcCHHHHHHHHHhcC---CCEEEE----EECCC-CCChHHHHHHHHHCCeEE
Confidence 555555 5555655332 13356666666544 888985 45554 56 89999999999999
Q ss_pred cCc-cH
Q 030024 87 STG-DW 91 (184)
Q Consensus 87 ~~G-tl 91 (184)
+.| +.
T Consensus 189 ~~GH~~ 194 (374)
T cd00854 189 SIGHSD 194 (374)
T ss_pred EeeCCc
Confidence 977 53
No 187
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=72.72 E-value=22 Score=34.65 Aligned_cols=96 Identities=10% Similarity=0.137 Sum_probs=70.2
Q ss_pred HHHHHHhhcc-cccEEEeeCccccccChhHHHHHHHHHHhCCceecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 030024 43 LEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (184)
Q Consensus 43 leDlLe~ag~-yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G-tlfE~al~qg~~~~~~yl~~~k~lGF~~IEI 120 (184)
.+..++.|.+ -||.+-+....+-+ +-+++-|+.++++|..+... .+.- +=....+.+-++.+.+.+.|.+.|-|
T Consensus 93 v~~~v~~a~~~Gvd~irif~~lnd~---~n~~~~i~~ak~~G~~v~~~i~~t~-~p~~~~~~~~~~~~~~~~~Gad~I~i 168 (582)
T TIGR01108 93 VERFVKKAVENGMDVFRIFDALNDP---RNLQAAIQAAKKHGAHAQGTISYTT-SPVHTLETYLDLAEELLEMGVDSICI 168 (582)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcH---HHHHHHHHHHHHcCCEEEEEEEecc-CCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4555555444 49998888655443 45999999999999877643 1100 10122246677777788899999999
Q ss_pred cCCcccCChhHHHHHHHHHHHC
Q 030024 121 NVGSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 121 SdGti~i~~~~r~~lI~~~~~~ 142 (184)
.|-.--+.+.+-.++|+.+++.
T Consensus 169 ~Dt~G~~~P~~v~~lv~~lk~~ 190 (582)
T TIGR01108 169 KDMAGILTPKAAYELVSALKKR 190 (582)
T ss_pred CCCCCCcCHHHHHHHHHHHHHh
Confidence 9999999999999999999876
No 188
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=72.70 E-value=7.1 Score=29.86 Aligned_cols=48 Identities=27% Similarity=0.424 Sum_probs=37.7
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcc
Q 030024 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (184)
.|...+++|++.|++.|++.|=|+|= -+-..-....+.+++.|+++++
T Consensus 13 dg~~~~~e~v~~A~~~Gl~~i~iTDH---~~~~~~~~~~~~~~~~~i~vi~ 60 (175)
T PF02811_consen 13 DGKDSPEEYVEQAKEKGLDAIAITDH---NNFAGYPDFYKEAKKKGIKVIP 60 (175)
T ss_dssp TSSSSHHHHHHHHHHTTESEEEEEEE---TTTTTHHHHHHHHHHTTSEEEE
T ss_pred hhcCCHHHHHHHHHHcCCCEEEEcCC---cccccchHHHHHHHhcCCceEE
Confidence 34457999999999999999999987 2233355777788889999887
No 189
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=72.54 E-value=4.5 Score=37.18 Aligned_cols=87 Identities=17% Similarity=0.232 Sum_probs=55.3
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcc----------cccEEEeeCccccccChhHHHHHHHHHHhCCceecC-c-cHH
Q 030024 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQ----------FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-G-DWA 92 (184)
Q Consensus 25 GlT~V~DkG~s~~~g~~~leDlLe~ag~----------yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~-G-tlf 92 (184)
|...++++|-.-...+..+++-+.. .+ ++--.. -.|| |||.+.|++..++||+||+++.- | -++
T Consensus 99 ~~~~~~~~g~~Gklt~e~v~~~i~~-~d~~~~~~~~~~~e~~~t-e~Gt--Vy~l~el~~i~~~~k~~~l~LHmDGAR~~ 174 (342)
T COG2008 99 GQKLPIVPGADGKLTPEDVEAAIRP-DDIHHAPTPLAVLENTAT-EGGT--VYPLDELEAISAVCKEHGLPLHMDGARLA 174 (342)
T ss_pred CceeccCCCCCCCcCHHHHHHhhcC-CCcccCCCceEEEeeccC-CCce--ecCHHHHHHHHHHHHHhCCceeechHHHH
Confidence 5666777754222244445544443 22 111112 2355 99999999999999999999999 7 499
Q ss_pred HHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 030024 93 EHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (184)
Q Consensus 93 E~al~qg~~~~~~yl~~~k~lGF~~IEIS 121 (184)
..+..-| -...+|-+ |||.+-|.
T Consensus 175 nA~valg-~~~~~~~~-----~~D~v~~~ 197 (342)
T COG2008 175 NALVALG-VALKTIKS-----YVDSVSFC 197 (342)
T ss_pred HHHHHcC-CCHHHHHh-----hCCEEEEe
Confidence 9999887 34555543 55555553
No 190
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=72.52 E-value=8.2 Score=38.33 Aligned_cols=69 Identities=25% Similarity=0.316 Sum_probs=49.7
Q ss_pred cChhHHHHHHHHHHhCCceec--CccHHHHHHHhCCchHHHHHHHHHHcCCCEE--------------Eec---------
Q 030024 67 MPKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI--------------ELN--------- 121 (184)
Q Consensus 67 ~p~~~L~eKI~l~~~~gV~v~--~GtlfE~al~qg~~~~~~yl~~~k~lGF~~I--------------EIS--------- 121 (184)
-+++..++-|+.+|++||.|. +|.=-+.|..= |+++|+..- ..+
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~I-----------A~~lGI~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 510 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDHLAIAKET-----------ARRLGLGTNIYTADVLLKGDNRDDLPSGELGEMVE 510 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHH-----------HHHcCCCCCCcCHHHhcCCcchhhCCHHHHHHHHH
Confidence 355668999999999999765 58655544332 677777531 011
Q ss_pred --CCcccCChhHHHHHHHHHHHCCCeE
Q 030024 122 --VGSLEIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 122 --dGti~i~~~~r~~lI~~~~~~Gf~v 146 (184)
+-+-.+.+++|.++|+..++.|-.|
T Consensus 511 ~~~vfAr~~Pe~K~~iV~~lq~~G~~V 537 (755)
T TIGR01647 511 DADGFAEVFPEHKYEIVEILQKRGHLV 537 (755)
T ss_pred hCCEEEecCHHHHHHHHHHHHhcCCEE
Confidence 1456789999999999999999776
No 191
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=72.27 E-value=11 Score=33.80 Aligned_cols=28 Identities=18% Similarity=0.339 Sum_probs=25.4
Q ss_pred cCChhHHHHHHHHHHHCCCeEccccccc
Q 030024 126 EIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (184)
Q Consensus 126 ~i~~~~r~~lI~~~~~~Gf~v~~EvG~K 153 (184)
-.+.++..++++.|+++|..|+||+-.-
T Consensus 64 ~yT~~di~elv~yA~~rgI~vIPEId~P 91 (311)
T cd06570 64 YYTQEQIREVVAYARDRGIRVVPEIDVP 91 (311)
T ss_pred ccCHHHHHHHHHHHHHcCCEEEEeecCc
Confidence 3789999999999999999999999765
No 192
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=72.22 E-value=14 Score=31.38 Aligned_cols=74 Identities=15% Similarity=0.160 Sum_probs=46.0
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 030024 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (184)
Q Consensus 39 g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G-tlfE~al~qg~~~~~~yl~~~k~lGF~~ 117 (184)
.+...-++++..+.+++++|+|++.+.-+..+. |+..+++|..+..- =|... ++....|++.+.+.|++.
T Consensus 13 ~~~~~l~~~~~~~~~~~~ikvg~~~f~~~G~~~----i~~l~~~~~~i~~D~Kl~Di-----~~t~~~~i~~~~~~gad~ 83 (230)
T PRK00230 13 SKEEALAFLDQLDPAVLFVKVGMELFTAGGPQF----VRELKQRGFKVFLDLKLHDI-----PNTVAKAVRALAKLGVDM 83 (230)
T ss_pred CHHHHHHHHHhcCCcccEEEEcHHHHHhcCHHH----HHHHHhcCCCEEEEeehhhc-----cccHHHHHHHHHHcCCCE
Confidence 556777899999999999999999887665544 44444445444332 13222 123445555566666666
Q ss_pred EEec
Q 030024 118 IELN 121 (184)
Q Consensus 118 IEIS 121 (184)
|-|.
T Consensus 84 itvH 87 (230)
T PRK00230 84 VNVH 87 (230)
T ss_pred EEEc
Confidence 6554
No 193
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=72.18 E-value=9.2 Score=38.90 Aligned_cols=68 Identities=19% Similarity=0.296 Sum_probs=49.5
Q ss_pred ChhHHHHHHHHHHhCCceec--CccHHHHHHHhCCchHHHHHHHHHHcCCCE------EEe--------------cCCcc
Q 030024 68 PKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDT------IEL--------------NVGSL 125 (184)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~--~GtlfE~al~qg~~~~~~yl~~~k~lGF~~------IEI--------------SdGti 125 (184)
+++..++-|+.+|++||.|. +|.=-..|.. -|+++|++. -|+ -+-+-
T Consensus 551 ~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~a-----------IA~~lGI~~~~vi~G~el~~~~~~el~~~v~~~~VfA 619 (903)
T PRK15122 551 PKESAAPAIAALRENGVAVKVLTGDNPIVTAK-----------ICREVGLEPGEPLLGTEIEAMDDAALAREVEERTVFA 619 (903)
T ss_pred cHHHHHHHHHHHHHCCCeEEEECCCCHHHHHH-----------HHHHcCCCCCCccchHhhhhCCHHHHHHHhhhCCEEE
Confidence 45568999999999999665 6864444432 277788751 111 13456
Q ss_pred cCChhHHHHHHHHHHHCCCeE
Q 030024 126 EIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 126 ~i~~~~r~~lI~~~~~~Gf~v 146 (184)
.+++++|.++|+..+++|-.|
T Consensus 620 r~sPe~K~~iV~~Lq~~G~vV 640 (903)
T PRK15122 620 KLTPLQKSRVLKALQANGHTV 640 (903)
T ss_pred EeCHHHHHHHHHHHHhCCCEE
Confidence 789999999999999999876
No 194
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=72.09 E-value=12 Score=29.71 Aligned_cols=96 Identities=19% Similarity=0.262 Sum_probs=58.1
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecC-ccHHHHHHHhCCchHHHHHHHHHHcCC-C
Q 030024 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGF-D 116 (184)
Q Consensus 39 g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~-GtlfE~al~qg~~~~~~yl~~~k~lGF-~ 116 (184)
|.+-+..+|+.+| .+.+=+|-- .| .++.++.+.+++..+-. -.+.=..+ ..+++.++.+++.|+ +
T Consensus 15 Gkniv~~~L~~~G--feVidLG~~----v~---~e~~v~aa~~~~adiVglS~L~t~~~----~~~~~~~~~l~~~gl~~ 81 (128)
T cd02072 15 GNKILDHAFTEAG--FNVVNLGVL----SP---QEEFIDAAIETDADAILVSSLYGHGE----IDCKGLREKCDEAGLKD 81 (128)
T ss_pred HHHHHHHHHHHCC--CEEEECCCC----CC---HHHHHHHHHHcCCCEEEEeccccCCH----HHHHHHHHHHHHCCCCC
Confidence 5556677777665 344555531 11 45666777777764422 11110000 135666777888888 5
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHCCCeEc
Q 030024 117 TIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (184)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~ 147 (184)
..=+=-|.+.+|.+++.+-++++++.||...
T Consensus 82 v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~v 112 (128)
T cd02072 82 ILLYVGGNLVVGKQDFEDVEKRFKEMGFDRV 112 (128)
T ss_pred CeEEEECCCCCChhhhHHHHHHHHHcCCCEE
Confidence 4455566677888888888888888888643
No 195
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=71.18 E-value=3.8 Score=34.61 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 030024 70 PFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (184)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~~yl~~~k~lGF~~IEI 120 (184)
..-.+.++.|+++||.+.|| |--|+.-. .++|++.|-+
T Consensus 88 ~~~~~v~~~~~~~~i~~iPG~~TptEi~~A-------------~~~G~~~vK~ 127 (196)
T PF01081_consen 88 GFDPEVIEYAREYGIPYIPGVMTPTEIMQA-------------LEAGADIVKL 127 (196)
T ss_dssp S--HHHHHHHHHHTSEEEEEESSHHHHHHH-------------HHTT-SEEEE
T ss_pred CCCHHHHHHHHHcCCcccCCcCCHHHHHHH-------------HHCCCCEEEE
Confidence 45677889999999999998 88888643 3567777765
No 196
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=71.11 E-value=9.3 Score=38.89 Aligned_cols=68 Identities=26% Similarity=0.301 Sum_probs=49.1
Q ss_pred ChhHHHHHHHHHHhCCceec--CccHHHHHHHhCCchHHHHHHHHHHcCCCE---E-----------------EecCCcc
Q 030024 68 PKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDT---I-----------------ELNVGSL 125 (184)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~--~GtlfE~al~qg~~~~~~yl~~~k~lGF~~---I-----------------EISdGti 125 (184)
+++..++-|+.+|++||.|. +|.=-+.|.. -|+++|++. + +=-+-+-
T Consensus 551 ~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~-----------IA~~lGI~~~~v~~G~el~~l~~~el~~~~~~~~VfA 619 (902)
T PRK10517 551 PKETTAPALKALKASGVTVKILTGDSELVAAK-----------VCHEVGLDAGEVLIGSDIETLSDDELANLAERTTLFA 619 (902)
T ss_pred chhhHHHHHHHHHHCCCEEEEEcCCCHHHHHH-----------HHHHcCCCccCceeHHHHHhCCHHHHHHHHhhCcEEE
Confidence 35568899999999999664 6865454433 377888751 0 0012355
Q ss_pred cCChhHHHHHHHHHHHCCCeE
Q 030024 126 EIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 126 ~i~~~~r~~lI~~~~~~Gf~v 146 (184)
.+++++|.++|+..+++|-.|
T Consensus 620 r~sPe~K~~IV~~Lq~~G~vV 640 (902)
T PRK10517 620 RLTPMHKERIVTLLKREGHVV 640 (902)
T ss_pred EcCHHHHHHHHHHHHHCCCEE
Confidence 789999999999999999877
No 197
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=71.05 E-value=58 Score=29.20 Aligned_cols=95 Identities=19% Similarity=0.295 Sum_probs=64.3
Q ss_pred CccccccChhHHHHHHHHHHhCC--ceecCccHHHHHHHhC--CchHHHHHHHHHHcCCCE-----EEecC----Ccc--
Q 030024 61 GGSHSLMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNG--PSAFKEYVEDCKQVGFDT-----IELNV----GSL-- 125 (184)
Q Consensus 61 ~GTs~l~p~~~L~eKI~l~~~~g--V~v~~GtlfE~al~qg--~~~~~~yl~~~k~lGF~~-----IEISd----Gti-- 125 (184)
.|...-.+-+.+.+.++..+++. |.++.=+..|+..... ....++-++.+++.|++. +|+-+ ..+
T Consensus 103 ~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~ 182 (351)
T TIGR03700 103 GGLHPNLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICP 182 (351)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCC
Confidence 45444455567889999998874 5554446777764332 124678899999999863 55533 111
Q ss_pred -cCChhHHHHHHHHHHHCCCeEccccccccCCC
Q 030024 126 -EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKS 157 (184)
Q Consensus 126 -~i~~~~r~~lI~~~~~~Gf~v~~EvG~K~~~~ 157 (184)
..+.++|.+.|+.+++.|+++.+ |.-.|..
T Consensus 183 ~~~~~~~~l~~i~~a~~~Gi~~~s--g~i~Glg 213 (351)
T TIGR03700 183 EKISAERWLEIHRTAHELGLKTNA--TMLYGHI 213 (351)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcce--EEEeeCC
Confidence 46778888999999999999866 5555543
No 198
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=70.84 E-value=5.9 Score=34.06 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC
Q 030024 70 PFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG 123 (184)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdG 123 (184)
..-.+.++.++++||.+.|| |--|+.- +.++|++.|-+==.
T Consensus 99 ~~~~~v~~~~~~~~i~~iPG~~TpsEi~~-------------A~~~Ga~~vKlFPA 141 (222)
T PRK07114 99 LFNPDIAKVCNRRKVPYSPGCGSLSEIGY-------------AEELGCEIVKLFPG 141 (222)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCCHHHHHH-------------HHHCCCCEEEECcc
Confidence 45677888999999999998 7888764 45689999888643
No 199
>PRK09248 putative hydrolase; Validated
Probab=70.79 E-value=11 Score=31.64 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=7.6
Q ss_pred HHHHHHHHHHcCCCEE
Q 030024 103 FKEYVEDCKQVGFDTI 118 (184)
Q Consensus 103 ~~~yl~~~k~lGF~~I 118 (184)
+++-++.+++.||+.+
T Consensus 203 ~~~~~~~~~~~g~~~~ 218 (246)
T PRK09248 203 FEEALKILDEVGFPEE 218 (246)
T ss_pred HHHHHHHHHHcCCCHH
Confidence 3444444445555444
No 200
>PRK09505 malS alpha-amylase; Reviewed
Probab=70.58 E-value=10 Score=37.64 Aligned_cols=54 Identities=13% Similarity=0.179 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc----------------------------cC-----ChhHHHHHHHHHHHCCCeEccc
Q 030024 103 FKEYVEDCKQVGFDTIELNVGSL----------------------------EI-----PEETLLRYVRLVKSAGLKAKPK 149 (184)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti----------------------------~i-----~~~~r~~lI~~~~~~Gf~v~~E 149 (184)
+.+-|+++++|||++|-||--+- .| +.++..++|+.+.++|++|+-.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 55567899999999999874221 11 3468999999999999998666
Q ss_pred cccccCC
Q 030024 150 FAVMFNK 156 (184)
Q Consensus 150 vG~K~~~ 156 (184)
+=..+.+
T Consensus 312 ~V~NH~~ 318 (683)
T PRK09505 312 VVMNHTG 318 (683)
T ss_pred ECcCCCc
Confidence 5444433
No 201
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=70.39 E-value=44 Score=26.64 Aligned_cols=97 Identities=20% Similarity=0.320 Sum_probs=59.1
Q ss_pred chhHHHHHHHhhccc-ccEEEeeCccccccC-----hhHHHHHHHHH-HhCCceecCccHHHHHHHhCCchHHHHHHHHH
Q 030024 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMP-----KPFIEEVVKRA-HQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCK 111 (184)
Q Consensus 39 g~~~leDlLe~ag~y-ID~lKfg~GTs~l~p-----~~~L~eKI~l~-~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k 111 (184)
.+..+.+.++.+-.. +|.+-|+..--.+.+ .+.+++..+.+ +..+|.+. .. ...+|++.|.
T Consensus 10 d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~---------~~---d~~~~~~~~~ 77 (211)
T cd00429 10 DFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLM---------VE---NPERYIEAFA 77 (211)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEee---------eC---CHHHHHHHHH
Confidence 445677777777776 899988543322222 12333333333 11111111 12 2356888999
Q ss_pred HcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccc
Q 030024 112 QVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFA 151 (184)
Q Consensus 112 ~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG 151 (184)
+.|.|.|=|-++.. ++..+.++.+++.|+.+..-++
T Consensus 78 ~~g~dgv~vh~~~~----~~~~~~~~~~~~~~~~~g~~~~ 113 (211)
T cd00429 78 KAGADIITFHAEAT----DHLHRTIQLIKELGMKAGVALN 113 (211)
T ss_pred HcCCCEEEECccch----hhHHHHHHHHHHCCCeEEEEec
Confidence 99999998888753 4556778999999988766553
No 202
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=70.30 E-value=9.7 Score=36.18 Aligned_cols=87 Identities=13% Similarity=-0.022 Sum_probs=68.8
Q ss_pred ccEEEeeCccccccCh-----------hHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 030024 54 VDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (184)
Q Consensus 54 ID~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISd 122 (184)
.+.+-+-..||-++-+ +.+.+-+++++++|..|..+ .|.+..-+++.+.+.++.+.+.|-+.|-+.|
T Consensus 90 ~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~--~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~D 167 (494)
T TIGR00973 90 KFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFS--CEDAGRTEIPFLARIVEAAINAGATTINIPD 167 (494)
T ss_pred CCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE--cCCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 5667676777665532 33558899999999887766 3444445556788889999999999999999
Q ss_pred CcccCChhHHHHHHHHHHHC
Q 030024 123 GSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~ 142 (184)
-.--+.+++-.++|+.++++
T Consensus 168 TvG~~~P~~~~~~i~~l~~~ 187 (494)
T TIGR00973 168 TVGYALPAEYGNLIKGLREN 187 (494)
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999875
No 203
>PRK05402 glycogen branching enzyme; Provisional
Probab=70.26 E-value=10 Score=37.50 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---------------cC-----ChhHHHHHHHHHHHCCCeEccccccc
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGSL---------------EI-----PEETLLRYVRLVKSAGLKAKPKFAVM 153 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti---------------~i-----~~~~r~~lI~~~~~~Gf~v~~EvG~K 153 (184)
-.++.+.++++||+++||++==+- .+ +.++..++|+.+.++|++|+-.+=..
T Consensus 267 i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~N 338 (726)
T PRK05402 267 LADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPA 338 (726)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 345567889999999999864321 11 25688899999999999997765433
No 204
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=69.90 E-value=11 Score=36.11 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCCCEEEecCCc---------ccC----------ChhHHHHHHHHHHHCCCeEcccccccc
Q 030024 103 FKEYVEDCKQVGFDTIELNVGS---------LEI----------PEETLLRYVRLVKSAGLKAKPKFAVMF 154 (184)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGt---------i~i----------~~~~r~~lI~~~~~~Gf~v~~EvG~K~ 154 (184)
+.+-++++++|||++|.++--+ -.. +.++..++|+.+.++|++|+-.+=..+
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH 105 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNH 105 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 4455788899999999885422 111 236889999999999999976554443
No 205
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=69.72 E-value=32 Score=30.80 Aligned_cols=104 Identities=18% Similarity=0.270 Sum_probs=72.1
Q ss_pred chhHHHHHHHhhcccccE---EEeeCccccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C-C---chHHHHH
Q 030024 39 SHNVLEDIFESMGQFVDG---LKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G-P---SAFKEYV 107 (184)
Q Consensus 39 g~~~leDlLe~ag~yID~---lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g-~---~~~~~yl 107 (184)
.+..++++++..-.++.+ ..+.. -.-|..+-.++++.++++|+ .++.| ++=+..+.. + + +.+.+.+
T Consensus 66 ~~~~l~~ll~~i~~~~~~~~~~eit~---e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i 142 (377)
T PRK08599 66 SAEQLERLLTAIHRNLPLSGLEEFTF---EANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAI 142 (377)
T ss_pred CHHHHHHHHHHHHHhCCCCCCCEEEE---EeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHH
Confidence 578999999988887543 23432 34555566899999999999 66667 554444422 2 1 2466778
Q ss_pred HHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHCCCe
Q 030024 108 EDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 108 ~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (184)
+.+++.||+.| -+--|.=.-+.++..+.++.+.+.+..
T Consensus 143 ~~l~~~g~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~ 182 (377)
T PRK08599 143 ANAKKAGFDNISIDLIYALPGQTIEDFKESLAKALALDIP 182 (377)
T ss_pred HHHHHcCCCcEEEeeecCCCCCCHHHHHHHHHHHHccCCC
Confidence 88889999854 444565566777888888988887754
No 206
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=69.62 E-value=4.7 Score=32.24 Aligned_cols=77 Identities=21% Similarity=0.211 Sum_probs=46.8
Q ss_pred CCCCceeEec-CCCCCCcchhHHHHHHHhhcccccEEEeeCccc----cccChhHHHHHHHHHHhCCceecC-c--cHHH
Q 030024 22 RRFGVTEMRS-PHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSH----SLMPKPFIEEVVKRAHQHDVYVST-G--DWAE 93 (184)
Q Consensus 22 R~~GlT~V~D-kG~s~~~g~~~leDlLe~ag~yID~lKfg~GTs----~l~p~~~L~eKI~l~~~~gV~v~~-G--tlfE 93 (184)
|..|....+| -|. +...++.+... -+|+||+...-. .-.....++..++++|++|+.+.- | +-
T Consensus 144 ~~~G~~i~ld~~g~----~~~~~~~l~~l---~~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gVe~~-- 214 (236)
T PF00563_consen 144 RSLGFRIALDDFGS----GSSSLEYLASL---PPDYIKLDGSLVRDLSDEEAQSLLQSLINLAKSLGIKVIAEGVESE-- 214 (236)
T ss_dssp HHCT-EEEEEEETS----TCGCHHHHHHH---CGSEEEEEHHGHTTTTSHHHHHHHHHHHHHHHHTT-EEEEECE-SH--
T ss_pred HhcCceeEeeeccC----Ccchhhhhhhc---ccccceeecccccccchhhHHHHHHHHHHHhhccccccceeecCCH--
Confidence 3457666666 443 23344443322 278999998654 223467788899999999998876 5 22
Q ss_pred HHHHhCCchHHHHHHHHHHcCCCEE
Q 030024 94 HLIRNGPSAFKEYVEDCKQVGFDTI 118 (184)
Q Consensus 94 ~al~qg~~~~~~yl~~~k~lGF~~I 118 (184)
+-++.++++|++.+
T Consensus 215 -----------~~~~~l~~~G~~~~ 228 (236)
T PF00563_consen 215 -----------EQLELLKELGVDYI 228 (236)
T ss_dssp -----------HHHHHHHHTTESEE
T ss_pred -----------HHHHHHHHcCCCEE
Confidence 22344667777765
No 207
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=69.61 E-value=25 Score=32.16 Aligned_cols=96 Identities=20% Similarity=0.395 Sum_probs=50.6
Q ss_pred chhHHHHHHHhhcc--cccEEEe--eCccccccChhHHHHHHHHHHh----CCce--ecC-ccHHHHHHHhCCchHHHHH
Q 030024 39 SHNVLEDIFESMGQ--FVDGLKF--SGGSHSLMPKPFIEEVVKRAHQ----HDVY--VST-GDWAEHLIRNGPSAFKEYV 107 (184)
Q Consensus 39 g~~~leDlLe~ag~--yID~lKf--g~GTs~l~p~~~L~eKI~l~~~----~gV~--v~~-GtlfE~al~qg~~~~~~yl 107 (184)
....++.+++...+ =+..+-| .+|=-.|.+...+++-+++.++ .+|. +.| |+++- ++..
T Consensus 49 s~e~~~~~i~~~~~~~~~~~v~i~f~GGEPlL~~~~~~~~~~~~~~~~~~~~~i~~~i~TNG~ll~----------~e~~ 118 (412)
T PRK13745 49 SDELLEKFIKEYINSQTMPQVLFTWHGGETLMRPLSFYKKALELQKKYARGRQIDNCIQTNGTLLT----------DEWC 118 (412)
T ss_pred CHHHHHHHHHHHHHcCCCCeEEEEEEccccCCCcHHHHHHHHHHHHHHcCCCceEEEEeecCEeCC----------HHHH
Confidence 44466666554322 1234444 3477677766566666676543 2343 334 66553 2334
Q ss_pred HHHHHcCCCEEEec-CCcccCChhH------------HHHHHHHHHHCCCe
Q 030024 108 EDCKQVGFDTIELN-VGSLEIPEET------------LLRYVRLVKSAGLK 145 (184)
Q Consensus 108 ~~~k~lGF~~IEIS-dGti~i~~~~------------r~~lI~~~~~~Gf~ 145 (184)
+.+++.+| .|-|| ||.-++-+.- -.+-|+.++++|..
T Consensus 119 ~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~ 168 (412)
T PRK13745 119 EFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVE 168 (412)
T ss_pred HHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCC
Confidence 44666677 77777 6653321111 13355677777754
No 208
>PRK07213 chlorohydrolase; Provisional
Probab=69.54 E-value=40 Score=30.14 Aligned_cols=92 Identities=15% Similarity=0.151 Sum_probs=59.2
Q ss_pred ccChhHHHHHHHHHHhCCceecC--c-cHHHHHHHh---CCchHHHHHHHHHHcCCC--EEEecCCcccCChhHHHHHHH
Q 030024 66 LMPKPFIEEVVKRAHQHDVYVST--G-DWAEHLIRN---GPSAFKEYVEDCKQVGFD--TIELNVGSLEIPEETLLRYVR 137 (184)
Q Consensus 66 l~p~~~L~eKI~l~~~~gV~v~~--G-tlfE~al~q---g~~~~~~yl~~~k~lGF~--~IEISdGti~i~~~~r~~lI~ 137 (184)
-++.+.+++-.++++++|+++.. + +--|..+.. |... ++++.++|+. .+ .= ...+++++ |+
T Consensus 175 ~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~~~G~~~----v~~~~~~G~~~~~i--~H-~~~~~~~~----i~ 243 (375)
T PRK07213 175 EYSDEELKFICKECKREKKIFSIHAAEHKGSVEYSLEKYGMTE----IERLINLGFKPDFI--VH-ATHPSNDD----LE 243 (375)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEeeCCchhHHHHHHHHcCCCh----HHHHHhcCCCCCEE--EE-CCCCCHHH----HH
Confidence 45677899999999999998886 4 554543322 2111 5777888997 43 22 24566665 66
Q ss_pred HHHHCC--CeEccccccccCCCCCCchhhhhcc
Q 030024 138 LVKSAG--LKAKPKFAVMFNKSDIPSDRDRAFG 168 (184)
Q Consensus 138 ~~~~~G--f~v~~EvG~K~~~~~~~~~~~~a~g 168 (184)
++++.| ....|..+.+.+..-.++..+.+.|
T Consensus 244 ~la~~g~~v~~~P~sn~~l~~g~~~v~~l~~~G 276 (375)
T PRK07213 244 LLKENNIPVVVCPRANASFNVGLPPLNEMLEKG 276 (375)
T ss_pred HHHHcCCcEEECCcchhhhccCCccHHHHHHCC
Confidence 777888 4457776666655555666665554
No 209
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=69.51 E-value=11 Score=36.00 Aligned_cols=54 Identities=20% Similarity=0.153 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc--------------cC-----ChhHHHHHHHHHHHCCCeEccccccccCC
Q 030024 103 FKEYVEDCKQVGFDTIELNVGSL--------------EI-----PEETLLRYVRLVKSAGLKAKPKFAVMFNK 156 (184)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti--------------~i-----~~~~r~~lI~~~~~~Gf~v~~EvG~K~~~ 156 (184)
+.+-++++++|||++|.++-=+- .+ +.++..++|+.|.++|++|+-.+=..+.+
T Consensus 29 i~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~~ 101 (543)
T TIGR02403 29 IIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNHTS 101 (543)
T ss_pred HHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECccccc
Confidence 44456677888888887753211 11 23789999999999999997766554443
No 210
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=69.42 E-value=5.8 Score=30.90 Aligned_cols=80 Identities=10% Similarity=0.039 Sum_probs=59.3
Q ss_pred EEEeeCccccccChhHHHHHHHHHHhCCc-eecC-ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHH
Q 030024 56 GLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLL 133 (184)
Q Consensus 56 ~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~-GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~ 133 (184)
+.|-.++.+ ...+ | .++++++|| .+.. |-..+.|+.+- ...+.++||+.+=++|.+-..+.+...
T Consensus 90 i~K~~~saf--~~t~-L---~~~L~~~gi~~vil~G~~t~~CV~~T-------a~~a~~~g~~v~v~~Da~~~~~~~~h~ 156 (174)
T PF00857_consen 90 IEKNRYSAF--FGTD-L---DEILRKRGIDTVILCGVATDVCVLAT-------ARDAFDRGYRVIVVEDACASYSPEAHE 156 (174)
T ss_dssp EEESSSSTT--TTSS-H---HHHHHHTTESEEEEEEESTTTHHHHH-------HHHHHHTT-EEEEEEEEEEBSSHHHHH
T ss_pred EEeeccccc--cccc-c---cccccccccceEEEcccccCcEEehh-------HHHHHHCCCEEEEEChhhcCCCHHHHH
Confidence 558766554 4433 3 355778999 4444 77889988764 234678899999999999999999999
Q ss_pred HHHHHHHHCCCeEcc
Q 030024 134 RYVRLVKSAGLKAKP 148 (184)
Q Consensus 134 ~lI~~~~~~Gf~v~~ 148 (184)
..++.++..|-.|.+
T Consensus 157 ~~l~~l~~~~~~v~t 171 (174)
T PF00857_consen 157 AALEELRKRGAEVIT 171 (174)
T ss_dssp HHHHHHHHHTSEEE-
T ss_pred HHHHHHHhCCCEEEe
Confidence 999999988877653
No 211
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=69.30 E-value=37 Score=33.38 Aligned_cols=115 Identities=11% Similarity=0.071 Sum_probs=84.2
Q ss_pred CCCceeEe----cCCCCCCcchhHHHHHHHhhccc-ccEEEeeCccccccChhHHHHHHHHHHhCCceecCc-cHHHHHH
Q 030024 23 RFGVTEMR----SPHYTLSSSHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLI 96 (184)
Q Consensus 23 ~~GlT~V~----DkG~s~~~g~~~leDlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G-tlfE~al 96 (184)
++-+-|++ -+||... .-+-.+-+++.|.++ ||++-+.- +|-.-+.++.-|+.++++|..+..- .+.- .-
T Consensus 75 nt~lqmL~Rg~N~vGy~~~-~d~vv~~~v~~a~~~Gidv~Rifd---~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~-sp 149 (596)
T PRK14042 75 NTQLSMLLRGQNLLGYRNY-ADDVVRAFVKLAVNNGVDVFRVFD---ALNDARNLKVAIDAIKSHKKHAQGAICYTT-SP 149 (596)
T ss_pred CCceEEEeccccccccccC-ChHHHHHHHHHHHHcCCCEEEEcc---cCcchHHHHHHHHHHHHcCCEEEEEEEecC-CC
Confidence 45666777 6777665 555666677765554 99988875 5666677999999999999854332 1111 11
Q ss_pred HhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 030024 97 RNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 97 ~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (184)
...++.+-++.+.+.++|.+.|=|.|-.--+.+.+-.++|+.++++
T Consensus 150 ~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~ 195 (596)
T PRK14042 150 VHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQA 195 (596)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhh
Confidence 2333466777778888999999999999999999999999999986
No 212
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=69.26 E-value=5.4 Score=34.75 Aligned_cols=41 Identities=27% Similarity=0.394 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCC----------hhHHHHHHHHHHHC
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGSLEIP----------EETLLRYVRLVKSA 142 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~----------~~~r~~lI~~~~~~ 142 (184)
...++++.+.+.|++.|+||.|+..-+ .....++++.+++.
T Consensus 229 e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 279 (327)
T cd02803 229 EAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKA 279 (327)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHH
Confidence 456677888899999999999986422 23344666666554
No 213
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=69.06 E-value=13 Score=25.34 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=28.8
Q ss_pred HHHHHHHhCCceecCc---cHHHHHHHhCCchHHHHHHHHHHc
Q 030024 74 EVVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQV 113 (184)
Q Consensus 74 eKI~l~~~~gV~v~~G---tlfE~al~qg~~~~~~yl~~~k~l 113 (184)
+..++.++|||..|-| +|-|++-.+| =..++.++++.++
T Consensus 14 ~~a~vf~~~gIDfCCgG~~~L~eA~~~~~-ld~~~vl~~L~~l 55 (56)
T PF04405_consen 14 RAARVFRKYGIDFCCGGNRSLEEACEEKG-LDPEEVLEELNAL 55 (56)
T ss_pred HHHHHHHHcCCcccCCCCchHHHHHHHcC-CCHHHHHHHHHHc
Confidence 3578899999999985 4777776665 4577777777654
No 214
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=68.68 E-value=16 Score=29.21 Aligned_cols=77 Identities=18% Similarity=0.204 Sum_probs=48.3
Q ss_pred CCCCceeEecC-CCCCCcchhHHHHHHHhhcccccEEEeeCcccccc-----ChhHHHHHHHHHHhCCceecC-c--cHH
Q 030024 22 RRFGVTEMRSP-HYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLM-----PKPFIEEVVKRAHQHDVYVST-G--DWA 92 (184)
Q Consensus 22 R~~GlT~V~Dk-G~s~~~g~~~leDlLe~ag~yID~lKfg~GTs~l~-----p~~~L~eKI~l~~~~gV~v~~-G--tlf 92 (184)
|..|....+|- |. +...++ +|... -+|+||+...-..-. ....++..++++|+.|+.|.- | +.
T Consensus 143 ~~~G~~ialddfg~----~~~~~~-~l~~l--~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gVe~~- 214 (241)
T smart00052 143 RELGVRIALDDFGT----GYSSLS-YLKRL--PVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEGVETP- 214 (241)
T ss_pred HHCCCEEEEeCCCC----cHHHHH-HHHhC--CCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEecCCCH-
Confidence 45577777764 32 333333 33332 399999986532222 235689999999999997765 5 32
Q ss_pred HHHHHhCCchHHHHHHHHHHcCCCEE
Q 030024 93 EHLIRNGPSAFKEYVEDCKQVGFDTI 118 (184)
Q Consensus 93 E~al~qg~~~~~~yl~~~k~lGF~~I 118 (184)
+-++.|+++|++.+
T Consensus 215 ------------~~~~~l~~~Gi~~~ 228 (241)
T smart00052 215 ------------EQLDLLRSLGCDYG 228 (241)
T ss_pred ------------HHHHHHHHcCCCEE
Confidence 23445777888765
No 215
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=68.66 E-value=14 Score=32.53 Aligned_cols=77 Identities=12% Similarity=0.159 Sum_probs=45.8
Q ss_pred ccChhHHHHHHHHHHhCCceecC----c--cH-HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHH
Q 030024 66 LMPKPFIEEVVKRAHQHDVYVST----G--DW-AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRL 138 (184)
Q Consensus 66 l~p~~~L~eKI~l~~~~gV~v~~----G--tl-fE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~ 138 (184)
+++.+.|++-|+....+++.+.- . +| +|.- .+.+. .+.|-.. .-..+.-..+.++-.++++.
T Consensus 12 ~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~------~~p~l----~~~g~~~-~~~~~~~~yT~~di~elv~y 80 (303)
T cd02742 12 FLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESK------KFPEL----AEKGGQI-NPRSPGGFYTYAQLKDIIEY 80 (303)
T ss_pred CcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeC------ccchh----hhhcccc-cCCCCCCeECHHHHHHHHHH
Confidence 56677788888888888775541 1 12 2211 01111 1111000 00122236888999999999
Q ss_pred HHHCCCeEccccccc
Q 030024 139 VKSAGLKAKPKFAVM 153 (184)
Q Consensus 139 ~~~~Gf~v~~EvG~K 153 (184)
|+++|..|+||+-.-
T Consensus 81 A~~rgI~viPEiD~P 95 (303)
T cd02742 81 AAARGIEVIPEIDMP 95 (303)
T ss_pred HHHcCCEEEEeccch
Confidence 999999999998654
No 216
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=68.64 E-value=15 Score=29.32 Aligned_cols=95 Identities=18% Similarity=0.295 Sum_probs=51.8
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecC-ccHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 030024 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (184)
Q Consensus 39 g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~-GtlfE~al~qg~~~~~~yl~~~k~lGF~~ 117 (184)
|.+-+.-+|+.+|- +.+=+|- .-. .++-++.++++++.+-. ..+. .+.-..+++..+.+++.|...
T Consensus 17 Gk~iv~~~l~~~Gf--eVi~LG~-----~v~--~e~~v~aa~~~~adiVglS~l~----~~~~~~~~~~~~~l~~~gl~~ 83 (134)
T TIGR01501 17 GNKILDHAFTNAGF--NVVNLGV-----LSP--QEEFIKAAIETKADAILVSSLY----GHGEIDCKGLRQKCDEAGLEG 83 (134)
T ss_pred hHHHHHHHHHHCCC--EEEECCC-----CCC--HHHHHHHHHHcCCCEEEEeccc----ccCHHHHHHHHHHHHHCCCCC
Confidence 44556666666653 3333442 111 45566666666664432 1221 111113556666777777643
Q ss_pred EEe-cCCcccCChhHHHHHHHHHHHCCCeE
Q 030024 118 IEL-NVGSLEIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 118 IEI-SdGti~i~~~~r~~lI~~~~~~Gf~v 146 (184)
+=| =-|.+.+|.++.....+++++.||..
T Consensus 84 ~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~ 113 (134)
T TIGR01501 84 ILLYVGGNLVVGKQDFPDVEKRFKEMGFDR 113 (134)
T ss_pred CEEEecCCcCcChhhhHHHHHHHHHcCCCE
Confidence 333 56666777777766777777777654
No 217
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=68.62 E-value=51 Score=28.17 Aligned_cols=79 Identities=8% Similarity=0.071 Sum_probs=49.6
Q ss_pred hHHHHHHHhhccc-ccEEEeeCcccc-------ccChhHHHHHHHHHHhC-CceecC--ccHHHHHHHhCCchHHHHHHH
Q 030024 41 NVLEDIFESMGQF-VDGLKFSGGSHS-------LMPKPFIEEVVKRAHQH-DVYVST--GDWAEHLIRNGPSAFKEYVED 109 (184)
Q Consensus 41 ~~leDlLe~ag~y-ID~lKfg~GTs~-------l~p~~~L~eKI~l~~~~-gV~v~~--GtlfE~al~qg~~~~~~yl~~ 109 (184)
..+.+..+.+-++ +|+|=+-+++-. +...+.+.+.++-.++. ++++.- ++.. ..+.+.+..+.
T Consensus 111 ~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~------~~~~~~~~a~~ 184 (289)
T cd02810 111 EDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF------DLEDIVELAKA 184 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC------CHHHHHHHHHH
Confidence 3444455555555 777777666432 23445677778877776 544443 2211 11256777888
Q ss_pred HHHcCCCEEEecCCcc
Q 030024 110 CKQVGFDTIELNVGSL 125 (184)
Q Consensus 110 ~k~lGF~~IEISdGti 125 (184)
+.+.|.|.|.+++++.
T Consensus 185 l~~~Gad~i~~~~~~~ 200 (289)
T cd02810 185 AERAGADGLTAINTIS 200 (289)
T ss_pred HHHcCCCEEEEEcccC
Confidence 9999999999998764
No 218
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=68.49 E-value=69 Score=26.76 Aligned_cols=81 Identities=12% Similarity=0.108 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHhCCceecC-cc--------HH---HHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--CChhH----
Q 030024 70 PFIEEVVKRAHQHDVYVST-GD--------WA---EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--IPEET---- 131 (184)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~-Gt--------lf---E~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~--i~~~~---- 131 (184)
..+++.-+++.++|+.+.. +. ++ +......-+.+++.++.|+.+|.+.|=+.-|... -+.++
T Consensus 47 ~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~ 126 (275)
T PRK09856 47 GGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGR 126 (275)
T ss_pred hHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHH
Confidence 3478888899999998754 11 11 1111111126888999999999999988654321 12222
Q ss_pred ----HHHHHHHHHHCCCeEcccc
Q 030024 132 ----LLRYVRLVKSAGLKAKPKF 150 (184)
Q Consensus 132 ----r~~lI~~~~~~Gf~v~~Ev 150 (184)
..++.+.|++.|+++--|-
T Consensus 127 ~~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 127 LAENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHHHHcCCEEEEec
Confidence 4577888899999988885
No 219
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=68.42 E-value=43 Score=32.83 Aligned_cols=109 Identities=11% Similarity=0.057 Sum_probs=77.3
Q ss_pred CCceeEecCCCCCCcch-----hHHHHHHHhhcc-cccEEEeeCccccccChhHHHHHHHHHHhCCcee-----cCccHH
Q 030024 24 FGVTEMRSPHYTLSSSH-----NVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV-----STGDWA 92 (184)
Q Consensus 24 ~GlT~V~DkG~s~~~g~-----~~leDlLe~ag~-yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v-----~~Gtlf 92 (184)
.-+.|+. .|..+. |. +..+..++.|.+ -||++-+.-...- -+.++.-|+.++++|..+ |+++-
T Consensus 77 ~~lqml~-Rg~n~v-g~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd---~~~~~~ai~~ak~~G~~~~~~i~yt~~p- 150 (593)
T PRK14040 77 TPQQMLL-RGQNLL-GYRHYADDVVERFVERAVKNGMDVFRVFDAMND---PRNLETALKAVRKVGAHAQGTLSYTTSP- 150 (593)
T ss_pred CeEEEEe-cCccee-ccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCc---HHHHHHHHHHHHHcCCeEEEEEEEeeCC-
Confidence 3444544 554333 22 344556766555 4999988864333 356889999999999863 22311
Q ss_pred HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 030024 93 EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 93 E~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (184)
+ ...+.+.++.+.+.+.|.+.|=|.|-.--+.+.+-.++|+.+++.
T Consensus 151 ~----~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~ 196 (593)
T PRK14040 151 V----HTLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKR 196 (593)
T ss_pred c----cCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHh
Confidence 1 123467778888899999999999999999999999999999986
No 220
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=68.41 E-value=47 Score=29.77 Aligned_cols=99 Identities=13% Similarity=0.131 Sum_probs=62.8
Q ss_pred hHHHHHHHhhcc--cccEEEeeCccccccChhHHHHHHHHHHhC----CceecC---ccHHHHHHHhCCchHHHHHHHHH
Q 030024 41 NVLEDIFESMGQ--FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH----DVYVST---GDWAEHLIRNGPSAFKEYVEDCK 111 (184)
Q Consensus 41 ~~leDlLe~ag~--yID~lKfg~GTs~l~p~~~L~eKI~l~~~~----gV~v~~---GtlfE~al~qg~~~~~~yl~~~k 111 (184)
..++.+++.... -|.-|-|.+|--.+.+.+.|.+.++.+++. +|.+.+ +++-.. --++.++..+
T Consensus 145 ~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~~~P~r-------it~el~~~L~ 217 (331)
T TIGR00238 145 KKWQKALDYIAEHPEIIEILISGGDPLMAKDHELEWLLKRLEEIPHLVRLRIGTRLPVVIPQR-------ITDELCELLA 217 (331)
T ss_pred HHHHHHHHHHHhCCCcCEEEEECCccccCCHHHHHHHHHHHHhcCCccEEEeecCCCccCchh-------cCHHHHHHHH
Confidence 355555554432 356677888888777776777777777664 455543 333211 1245666677
Q ss_pred HcCCCEEEec--CCcccCChhHHHHHHHHHHHCCCeEc
Q 030024 112 QVGFDTIELN--VGSLEIPEETLLRYVRLVKSAGLKAK 147 (184)
Q Consensus 112 ~lGF~~IEIS--dGti~i~~~~r~~lI~~~~~~Gf~v~ 147 (184)
+.|+..+=+| ++.-++.++. .+.|+++++.|+.+.
T Consensus 218 ~~~~~~~~vsh~nh~~Ei~~~~-~~ai~~L~~aGi~v~ 254 (331)
T TIGR00238 218 SFELQLMLVTHINHCNEITEEF-AEAMKKLRTVNVTLL 254 (331)
T ss_pred hcCCcEEEEccCCChHhCCHHH-HHHHHHHHHcCCEEE
Confidence 7788888777 4444565444 478888888888763
No 221
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=68.01 E-value=29 Score=33.05 Aligned_cols=87 Identities=13% Similarity=0.153 Sum_probs=67.0
Q ss_pred hcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCc---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc
Q 030024 50 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE 126 (184)
Q Consensus 50 ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G---tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~ 126 (184)
+..-||.+-+....+-+ +.+++-|+.++++|..+... |+- - ....+.+-++.+.+.+.|.+.|=|.|-.--
T Consensus 105 ~~~Gvd~irif~~lnd~---~n~~~~i~~ak~~G~~v~~~i~~t~~-p--~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~ 178 (467)
T PRK14041 105 AEYGLDIIRIFDALNDI---RNLEKSIEVAKKHGAHVQGAISYTVS-P--VHTLEYYLEFARELVDMGVDSICIKDMAGL 178 (467)
T ss_pred HHCCcCEEEEEEeCCHH---HHHHHHHHHHHHCCCEEEEEEEeccC-C--CCCHHHHHHHHHHHHHcCCCEEEECCccCC
Confidence 44469999988766653 45899999999999977621 111 0 112245667777888899999999999999
Q ss_pred CChhHHHHHHHHHHHC
Q 030024 127 IPEETLLRYVRLVKSA 142 (184)
Q Consensus 127 i~~~~r~~lI~~~~~~ 142 (184)
+.+.+-.++|+.++++
T Consensus 179 l~P~~v~~Lv~~lk~~ 194 (467)
T PRK14041 179 LTPKRAYELVKALKKK 194 (467)
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999999886
No 222
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=67.79 E-value=61 Score=29.54 Aligned_cols=118 Identities=14% Similarity=0.221 Sum_probs=67.5
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCc---eecCccH----HHHHH
Q 030024 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV---YVSTGDW----AEHLI 96 (184)
Q Consensus 24 ~GlT~V~DkG~s~~~g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV---~v~~Gtl----fE~al 96 (184)
.|++.|.=-|=-++ -...+.++++.+.+.-.+-.+.. .++--.|.++++-++++|+ .++.-++ +...-
T Consensus 105 ~Gv~~I~~tGGEPl-lr~dl~eli~~l~~~~gi~~i~i----tTNG~lL~~~~~~L~~aGld~VnISLDsl~~e~~~~it 179 (373)
T PLN02951 105 AGVDKIRLTGGEPT-LRKDIEDICLQLSSLKGLKTLAM----TTNGITLSRKLPRLKEAGLTSLNISLDTLVPAKFEFLT 179 (373)
T ss_pred CCCCEEEEECCCCc-chhhHHHHHHHHHhcCCCceEEE----eeCcchHHHHHHHHHhCCCCeEEEeeccCCHHHHHHHh
Confidence 36655543332222 22346677776654312111222 1222224556677777775 4565343 32222
Q ss_pred HhC-CchHHHHHHHHHHcCCCEEEecCCccc-CChhHHHHHHHHHHHCCCeE
Q 030024 97 RNG-PSAFKEYVEDCKQVGFDTIELNVGSLE-IPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 97 ~qg-~~~~~~yl~~~k~lGF~~IEISdGti~-i~~~~r~~lI~~~~~~Gf~v 146 (184)
..+ .+++-+-++.+++.|+..|.|+--.+. ++.++..++++.+++.|..+
T Consensus 180 r~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~Ei~~li~~a~~~gi~v 231 (373)
T PLN02951 180 RRKGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEICDFVELTRDKPINV 231 (373)
T ss_pred cCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHHHHHHHHHHHhCCCeE
Confidence 111 134556667788899988888765554 78899999999999999665
No 223
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=67.68 E-value=20 Score=30.95 Aligned_cols=100 Identities=10% Similarity=0.162 Sum_probs=45.7
Q ss_pred ccChhHHHHHHHHHHhCCc---eecC-cc-HHHHH----HHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHH
Q 030024 66 LMPKPFIEEVVKRAHQHDV---YVST-GD-WAEHL----IRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYV 136 (184)
Q Consensus 66 l~p~~~L~eKI~l~~~~gV---~v~~-Gt-lfE~a----l~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI 136 (184)
+...+.+++.++-+.+.|+ ++|. |. +-... ..-.++.+.+.++.+++.|+...==..+ ..-|
T Consensus 116 ~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~---------~~~i 186 (342)
T cd01299 116 VDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAYG---------AEAI 186 (342)
T ss_pred ecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeCC---------HHHH
Confidence 3444556777777777775 5554 31 11000 0011225666666777776654322121 1234
Q ss_pred HHHHHCCCeEccccccccCCCCCCchhhhhccccccCCCCC
Q 030024 137 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 177 (184)
Q Consensus 137 ~~~~~~Gf~v~~EvG~K~~~~~~~~~~~~a~ga~~~~~~~~ 177 (184)
+.+.+.|...+-- +.-. .+-.++.+.+-|.+++|+|.+
T Consensus 187 ~~~l~~G~~~i~H-~~~~--~~~~~~~l~~~g~~~~~t~~~ 224 (342)
T cd01299 187 RRAIRAGVDTIEH-GFLI--DDETIELMKEKGIFLVPTLAT 224 (342)
T ss_pred HHHHHcCCCEEee-cCCC--CHHHHHHHHHCCcEEeCcHHH
Confidence 4444445433211 1000 011233344458899988864
No 224
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=67.66 E-value=6.6 Score=36.18 Aligned_cols=121 Identities=20% Similarity=0.147 Sum_probs=78.2
Q ss_pred CCCCCCCCCceeEecCCCCCCcchhHHHHHHHh----hcccccEEEeeCccccccChhHHHHHHHHHHhCCc-eecC-cc
Q 030024 17 RAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFES----MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVST-GD 90 (184)
Q Consensus 17 R~~KPR~~GlT~V~DkG~s~~~g~~~leDlLe~----ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~-Gt 90 (184)
|..|....++|.|++-.+ .+.++... ++=|.+- +-....+++.+.+.++++-+.+.|+ .+.. ||
T Consensus 46 r~~~~~~~~vtyv~n~~i-------n~TN~C~~~C~fCaF~~~~---~~~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG 115 (370)
T COG1060 46 RRRKRVGDGVTYVVNRNI-------NYTNICVNDCTFCAFYRKP---GDPKAYTLSPEEILEEVREAVKRGITEVLIVGG 115 (370)
T ss_pred HHhhccCCcEEEEEeecC-------CcchhhcCCCCccccccCC---CCccccccCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 345667788999998887 44455544 3334443 3334567777889999999999998 4443 43
Q ss_pred --------HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcccccc
Q 030024 91 --------WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (184)
Q Consensus 91 --------lfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG~ 152 (184)
|+|.++.. --++|. .+.-.+|+..||.--+.......+ +.++++++.|+-..|+.|-
T Consensus 116 ~~p~~~~~y~~~~~~~---ik~~~p-~~~i~a~s~~ei~~~~~~~~~s~~-E~l~~Lk~aGldsmpg~~a 180 (370)
T COG1060 116 EHPELSLEYYEELFRT---IKEEFP-DLHIHALSAGEILFLAREGGLSYE-EVLKRLKEAGLDSMPGGGA 180 (370)
T ss_pred cCCCcchHHHHHHHHH---HHHhCc-chhhcccCHHHhHHHHhccCCCHH-HHHHHHHHcCCCcCcCcce
Confidence 33333322 111233 344488998888877665555554 6778888999999887663
No 225
>PRK12568 glycogen branching enzyme; Provisional
Probab=67.65 E-value=13 Score=37.37 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCCCEEEecCC----------cc-----c-----CChhHHHHHHHHHHHCCCeEcccccccc
Q 030024 103 FKEYVEDCKQVGFDTIELNVG----------SL-----E-----IPEETLLRYVRLVKSAGLKAKPKFAVMF 154 (184)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdG----------ti-----~-----i~~~~r~~lI~~~~~~Gf~v~~EvG~K~ 154 (184)
.++.+.++++|||++||++-= .- . =+.++..++|+.+.++|++|+-.+=..+
T Consensus 272 a~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH 343 (730)
T PRK12568 272 AEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVSAH 343 (730)
T ss_pred HHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 456689999999999998632 11 1 1356889999999999999987765443
No 226
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=67.61 E-value=43 Score=29.97 Aligned_cols=117 Identities=12% Similarity=0.146 Sum_probs=56.5
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChh-HHHHHHHHHHhCCceecCc---c---HHHHHHHhCCchHHH---HHH
Q 030024 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKP-FIEEVVKRAHQHDVYVSTG---D---WAEHLIRNGPSAFKE---YVE 108 (184)
Q Consensus 39 g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~-~L~eKI~l~~~~gV~v~~G---t---lfE~al~qg~~~~~~---yl~ 108 (184)
|...+.++++..-.....+.+.. +.|.. -..+-++...++|..++.. | ++..+-.+ ...++ .++
T Consensus 125 g~~~l~~li~~I~~~~p~i~Iev----l~~d~~g~~e~l~~l~~aG~dv~~hnlEt~~~l~~~vrr~--~t~e~~Le~l~ 198 (302)
T TIGR00510 125 GASHLAECIEAIREKLPNIKIET----LVPDFRGNIAALDILLDAPPDVYNHNLETVERLTPFVRPG--ATYRWSLKLLE 198 (302)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEE----eCCcccCCHHHHHHHHHcCchhhcccccchHHHHHHhCCC--CCHHHHHHHHH
Confidence 45567777776665544333332 22210 0345677777777766653 1 22222211 13443 333
Q ss_pred HHHHcCCCEEEecCCcc---cCChhHHHHHHHHHHHCCCeEccccccccCCCCCCchhhhhccccccCCCCCCCC
Q 030024 109 DCKQVGFDTIELNVGSL---EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEG 180 (184)
Q Consensus 109 ~~k~lGF~~IEISdGti---~i~~~~r~~lI~~~~~~Gf~v~~EvG~K~~~~~~~~~~~~a~ga~~~~~~~~~~~ 180 (184)
.+++++= .+.++.|.| -=+.+++.+.++.+++.|+...+ +|.|+-|+++...+
T Consensus 199 ~ak~~~p-gi~~~TgiIVGlGETeee~~etl~~Lrelg~d~v~------------------igqYl~p~~~~~~v 254 (302)
T TIGR00510 199 RAKEYLP-NLPTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVT------------------LGQYLRPSRRHLPV 254 (302)
T ss_pred HHHHhCC-CCeecceEEEECCCCHHHHHHHHHHHHhcCCCEEE------------------eecccCCCCCCCcc
Confidence 4444410 122322222 44555666666666666555443 36677776655443
No 227
>PLN02389 biotin synthase
Probab=67.48 E-value=24 Score=32.52 Aligned_cols=70 Identities=21% Similarity=0.197 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHHHHHH
Q 030024 70 PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYVRLVK 140 (184)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti---------~i~~~~r~~lI~~~~ 140 (184)
+.+.+.+..+++.++.++. ..| -.-++-++..|+.|++.+-++--+. .-+-++|++.|+.++
T Consensus 153 e~i~eiir~ik~~~l~i~~--------s~G-~l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~ 223 (379)
T PLN02389 153 NQILEYVKEIRGMGMEVCC--------TLG-MLEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVR 223 (379)
T ss_pred HHHHHHHHHHhcCCcEEEE--------CCC-CCCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHH
Confidence 4577777777777776652 222 1345666778899999877654421 246788999999999
Q ss_pred HCCCeEcc
Q 030024 141 SAGLKAKP 148 (184)
Q Consensus 141 ~~Gf~v~~ 148 (184)
+.|++|.+
T Consensus 224 ~~Gi~v~s 231 (379)
T PLN02389 224 EAGISVCS 231 (379)
T ss_pred HcCCeEeE
Confidence 99998743
No 228
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=67.47 E-value=6.3 Score=33.93 Aligned_cols=75 Identities=23% Similarity=0.201 Sum_probs=45.4
Q ss_pred EEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc---CCh-hHH
Q 030024 57 LKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE---IPE-ETL 132 (184)
Q Consensus 57 lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~---i~~-~~r 132 (184)
+|=|--++-+|+++.|++.++++|+||..+-. +-. -=.+-+.-++++|.|.|-|-.-.-. =+. .-|
T Consensus 154 iKDGkslFdfm~~e~l~eFvd~Ah~hGL~~Al--------AGs--~~~ehlp~l~eig~DivGvRgaaC~~GDRn~g~I~ 223 (235)
T COG1891 154 IKDGKSLFDFMDEEELEEFVDLAHEHGLEVAL--------AGS--LKFEHLPILKEIGPDIVGVRGAACEGGDRNTGAIR 223 (235)
T ss_pred cccchhHHhhhcHHHHHHHHHHHHHcchHHHh--------ccc--cccccchHHHHhCCCeeeecchhccCCCcccchHH
Confidence 45555666678888888899999998876544 221 1123345578888888876432111 111 345
Q ss_pred HHHHHHHHH
Q 030024 133 LRYVRLVKS 141 (184)
Q Consensus 133 ~~lI~~~~~ 141 (184)
.+++++.++
T Consensus 224 relV~kL~e 232 (235)
T COG1891 224 RELVRKLKE 232 (235)
T ss_pred HHHHHHHHH
Confidence 566766655
No 229
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=67.44 E-value=23 Score=31.09 Aligned_cols=71 Identities=28% Similarity=0.311 Sum_probs=49.6
Q ss_pred ChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC--hhH----HH---HHHHH
Q 030024 68 PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP--EET----LL---RYVRL 138 (184)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~--~~~----r~---~lI~~ 138 (184)
..+.|++.|+.+|+.||.|+. | =+| -.+-++.++++|-++||+-.|...-. ..+ .. ..-+.
T Consensus 108 ~~~~l~~~i~~l~~~gI~VSL---F-----iDP--~~~qi~~A~~~GAd~VELhTG~YA~a~~~~~~~~el~~i~~aa~~ 177 (237)
T TIGR00559 108 LKDKLCELVKRFHAAGIEVSL---F-----IDA--DKDQISAAAEVGADRIEIHTGPYANAYNKKEMAEELQRIVKASVH 177 (237)
T ss_pred CHHHHHHHHHHHHHCCCEEEE---E-----eCC--CHHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHHHH
Confidence 456799999999999999985 1 221 24556779999999999999887432 212 22 23345
Q ss_pred HHHCCCeEcc
Q 030024 139 VKSAGLKAKP 148 (184)
Q Consensus 139 ~~~~Gf~v~~ 148 (184)
+++.|+.|..
T Consensus 178 A~~lGL~VnA 187 (237)
T TIGR00559 178 AHSLGLKVNA 187 (237)
T ss_pred HHHcCCEEec
Confidence 6677888854
No 230
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=67.43 E-value=50 Score=30.00 Aligned_cols=97 Identities=12% Similarity=0.159 Sum_probs=62.2
Q ss_pred chhHHHHHHHhhcc-cccEEEeeCccccc-cChhHHHHHHHHHHhC--CceecCccHHHHHHHhCCchHHHHHHHHHHcC
Q 030024 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSL-MPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVG 114 (184)
Q Consensus 39 g~~~leDlLe~ag~-yID~lKfg~GTs~l-~p~~~L~eKI~l~~~~--gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lG 114 (184)
.+.++.+.+..+.+ =+.-+-|-.|-... .+-+.+.+.++..++. +|.+..|.+ ..+ -++.+|+.|
T Consensus 105 s~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p~i~i~~g~l----------t~e-~l~~Lk~aG 173 (371)
T PRK09240 105 DEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIAREYFSSVSIEVQPL----------SEE-EYAELVELG 173 (371)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCCceeccCCC----------CHH-HHHHHHHcC
Confidence 33344444333222 25666665565544 4556777777777765 244444421 233 347899999
Q ss_pred CCEEEecCCccc------C-------ChhHHHHHHHHHHHCCCe-E
Q 030024 115 FDTIELNVGSLE------I-------PEETLLRYVRLVKSAGLK-A 146 (184)
Q Consensus 115 F~~IEISdGti~------i-------~~~~r~~lI~~~~~~Gf~-v 146 (184)
++.+-++--|.+ | +.++|++.|+++++.||+ |
T Consensus 174 v~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v 219 (371)
T PRK09240 174 LDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKI 219 (371)
T ss_pred CCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCee
Confidence 999998877752 4 568999999999999996 5
No 231
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=67.41 E-value=29 Score=30.83 Aligned_cols=73 Identities=16% Similarity=0.289 Sum_probs=50.8
Q ss_pred cChhHHHHHHHHHHhCCceecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCe
Q 030024 67 MPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 67 ~p~~~L~eKI~l~~~~gV~v~~G-tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (184)
++.+.|++-|+..++.-=.++ | .++ +... ..++.++.+.+.|.+.|.++-|. |. ++|+++++.|.+
T Consensus 45 ~~~~~l~~~i~~~~~~t~~pf-gvn~~---~~~~--~~~~~~~~~~~~~v~~v~~~~g~---p~----~~i~~lk~~g~~ 111 (307)
T TIGR03151 45 APPDVVRKEIRKVKELTDKPF-GVNIM---LLSP--FVDELVDLVIEEKVPVVTTGAGN---PG----KYIPRLKENGVK 111 (307)
T ss_pred CCHHHHHHHHHHHHHhcCCCc-EEeee---cCCC--CHHHHHHHHHhCCCCEEEEcCCC---cH----HHHHHHHHcCCE
Confidence 456779999999987421111 2 221 0122 56788898999999999997663 32 589999999999
Q ss_pred Ecccccc
Q 030024 146 AKPKFAV 152 (184)
Q Consensus 146 v~~EvG~ 152 (184)
|.+.++.
T Consensus 112 v~~~v~s 118 (307)
T TIGR03151 112 VIPVVAS 118 (307)
T ss_pred EEEEcCC
Confidence 9887754
No 232
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=67.34 E-value=55 Score=30.79 Aligned_cols=89 Identities=11% Similarity=0.186 Sum_probs=49.1
Q ss_pred ccEEEeeCccccccChhHHHHHHHHHHhCC-ceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----
Q 030024 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-VYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL----- 125 (184)
Q Consensus 54 ID~lKfg~GTs~l~p~~~L~eKI~l~~~~g-V~v~~G--tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti----- 125 (184)
+..+-|.-.+..+ +++.+++..+...+.| +.+.-+ +=.... ..+ ++.++.+++.|+..|.|.--|.
T Consensus 240 v~~~~~~Dd~f~~-~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i-~~d----~ell~~l~~aG~~~v~iGiES~~~~~L 313 (497)
T TIGR02026 240 VGFFILADEEPTI-NRKKFQEFCEEIIARNPISVTWGINTRVTDI-VRD----ADILHLYRRAGLVHISLGTEAAAQATL 313 (497)
T ss_pred CCEEEEEeccccc-CHHHHHHHHHHHHhcCCCCeEEEEecccccc-cCC----HHHHHHHHHhCCcEEEEccccCCHHHH
Confidence 4555555555443 3344666666555554 332211 111111 111 4677778888888887743333
Q ss_pred -----cCChhHHHHHHHHHHHCCCeEcc
Q 030024 126 -----EIPEETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~Gf~v~~ 148 (184)
..+.++-.+.|+.+++.|+.+..
T Consensus 314 ~~~~K~~t~~~~~~ai~~l~~~Gi~~~~ 341 (497)
T TIGR02026 314 DHFRKGTTTSTNKEAIRLLRQHNILSEA 341 (497)
T ss_pred HHhcCCCCHHHHHHHHHHHHHCCCcEEE
Confidence 24456666788888888887643
No 233
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=67.29 E-value=8.8 Score=32.61 Aligned_cols=68 Identities=12% Similarity=0.174 Sum_probs=43.2
Q ss_pred chhHHHHHHHhhcccccEEEeeCcccc---------------ccChhHHHHHHHHHHhCCceecCc--cHHHHHHHhCCc
Q 030024 39 SHNVLEDIFESMGQFVDGLKFSGGSHS---------------LMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPS 101 (184)
Q Consensus 39 g~~~leDlLe~ag~yID~lKfg~GTs~---------------l~p~~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~ 101 (184)
+++.++.+-+... | +.+|-||-. ++.+..-.+-|+.|++++|...|| |.-|+. +
T Consensus 53 ~~~~I~~l~~~~p---~-~~IGAGTVl~~~~a~~a~~aGA~FivsP~~~~~vi~~a~~~~i~~iPG~~TptEi~--~--- 123 (212)
T PRK05718 53 ALEAIRLIAKEVP---E-ALIGAGTVLNPEQLAQAIEAGAQFIVSPGLTPPLLKAAQEGPIPLIPGVSTPSELM--L--- 123 (212)
T ss_pred HHHHHHHHHHHCC---C-CEEEEeeccCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHHH--H---
Confidence 4455555554433 3 667766621 122233457788888899988888 677733 2
Q ss_pred hHHHHHHHHHHcCCCEEEecCC
Q 030024 102 AFKEYVEDCKQVGFDTIELNVG 123 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG 123 (184)
+.++|++.|-+-..
T Consensus 124 --------a~~~Ga~~vKlFPa 137 (212)
T PRK05718 124 --------GMELGLRTFKFFPA 137 (212)
T ss_pred --------HHHCCCCEEEEccc
Confidence 66789999988553
No 234
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=67.28 E-value=38 Score=27.64 Aligned_cols=90 Identities=16% Similarity=0.175 Sum_probs=56.4
Q ss_pred HhhcccccEEEeeCccccccChhHHHHHHHHHHhCCcee----cC-ccHHHHHHHhCCchHHHHHHHHHHcCCC-----E
Q 030024 48 ESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV----ST-GDWAEHLIRNGPSAFKEYVEDCKQVGFD-----T 117 (184)
Q Consensus 48 e~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v----~~-GtlfE~al~qg~~~~~~yl~~~k~lGF~-----~ 117 (184)
..+|-=.=+||.+-|+..+-|. ..+-++-|+++|+++ |. .+--+-+ +. ..+-|++.++..|+. +
T Consensus 22 k~~Gi~faiikateG~~~~D~~--~~~n~~~A~~aGl~vG~Yhf~~~~~~~~a--~~--eA~~f~~~~~~~~~~~~~~~~ 95 (192)
T cd06522 22 KNYGVKAVIVKLTEGTTYRNPY--AASQIANAKAAGLKVSAYHYAHYTSAADA--QA--EARYFANTAKSLGLSKNTVMV 95 (192)
T ss_pred HHcCCCEEEEEEcCCCCccChH--HHHHHHHHHHCCCeeEEEEEEecCChHHH--HH--HHHHHHHHHHHcCCCCCCceE
Confidence 3344333389999999888776 999999999999954 11 1111222 22 467788888887754 3
Q ss_pred --EEecCCcccCChhHHHHHHHHHHHCCC
Q 030024 118 --IELNVGSLEIPEETLLRYVRLVKSAGL 144 (184)
Q Consensus 118 --IEISdGti~i~~~~r~~lI~~~~~~Gf 144 (184)
||-+.+.-.+. +.-..+++++++.|.
T Consensus 96 lD~E~~~~~~~~~-~~~~~F~~~v~~~g~ 123 (192)
T cd06522 96 ADMEDSSSSGNAT-ANVNAFWQTMKAAGY 123 (192)
T ss_pred EEeecCCCcchHH-HHHHHHHHHHHHcCC
Confidence 34433311221 223578888888887
No 235
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=67.08 E-value=29 Score=28.11 Aligned_cols=69 Identities=22% Similarity=0.225 Sum_probs=42.7
Q ss_pred HHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 030024 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (184)
Q Consensus 42 ~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEIS 121 (184)
.++.+.+.-+++|=+- ...+...+.+-++.++++|+++.++ ..++....+.++.+.++|.|.|-+.
T Consensus 68 ~~~~~~~~Gad~i~vh-------~~~~~~~~~~~i~~~~~~g~~~~~~-------~~~~~t~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 68 EAEQAFAAGADIVTVL-------GVADDATIKGAVKAAKKHGKEVQVD-------LINVKDKVKRAKELKELGADYIGVH 133 (206)
T ss_pred HHHHHHHcCCCEEEEe-------ccCCHHHHHHHHHHHHHcCCEEEEE-------ecCCCChHHHHHHHHHcCCCEEEEc
Confidence 3666666666655433 1234445789999999999988652 0011123333444677899999887
Q ss_pred CCc
Q 030024 122 VGS 124 (184)
Q Consensus 122 dGt 124 (184)
.|+
T Consensus 134 pg~ 136 (206)
T TIGR03128 134 TGL 136 (206)
T ss_pred CCc
Confidence 664
No 236
>PLN00196 alpha-amylase; Provisional
Probab=66.85 E-value=14 Score=34.51 Aligned_cols=52 Identities=15% Similarity=0.275 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCCCEEEecC--------Cc-----ccCC------hhHHHHHHHHHHHCCCeEcccccccc
Q 030024 103 FKEYVEDCKQVGFDTIELNV--------GS-----LEIP------EETLLRYVRLVKSAGLKAKPKFAVMF 154 (184)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISd--------Gt-----i~i~------~~~r~~lI~~~~~~Gf~v~~EvG~K~ 154 (184)
+.+=+.++++|||++|-|+- |. -+++ .++..++|+.+.++|++|+--+=..+
T Consensus 46 i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH 116 (428)
T PLN00196 46 LMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINH 116 (428)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccC
Confidence 45557788999999998873 22 3453 26889999999999999966554333
No 237
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=66.78 E-value=19 Score=33.23 Aligned_cols=88 Identities=17% Similarity=0.240 Sum_probs=65.0
Q ss_pred HHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCc---cHHHHHHHh--C-C------chHHHHHHHH
Q 030024 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRN--G-P------SAFKEYVEDC 110 (184)
Q Consensus 43 leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G---tlfE~al~q--g-~------~~~~~yl~~~ 110 (184)
..--|..+...+|-+-+-=|. +=.++.+++.++.|+++||++--| |-+|.-+.+ | + .+.-++++.|
T Consensus 83 ~~lAl~a~~~g~dkiRINPGN--ig~~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~l 160 (346)
T TIGR00612 83 YRLAALAMAKGVAKVRINPGN--IGFRERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAIL 160 (346)
T ss_pred cHHHHHHHHhccCeEEECCCC--CCCHHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 445577788889999987776 444778999999999999988765 433443333 2 1 2456889999
Q ss_pred HHcCCCEEEecCCcccCChhHH
Q 030024 111 KQVGFDTIELNVGSLEIPEETL 132 (184)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r 132 (184)
.++||+-|=||--+-+.+.--.
T Consensus 161 e~~~F~diviS~KsSdv~~~i~ 182 (346)
T TIGR00612 161 EKLGFRNVVLSMKASDVAETVA 182 (346)
T ss_pred HHCCCCcEEEEEEcCCHHHHHH
Confidence 9999999999987776665443
No 238
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=66.72 E-value=14 Score=36.57 Aligned_cols=108 Identities=16% Similarity=0.066 Sum_probs=62.2
Q ss_pred hhcccccEEEeeCccccccChhHHHHHHHHHHhCCceec---CccHHH---HHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 030024 49 SMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS---TGDWAE---HLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (184)
Q Consensus 49 ~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~---~GtlfE---~al~qg~~~~~~yl~~~k~lGF~~IEISd 122 (184)
+++.-+|.-.+-|....- . ...+-...+ .|-+| .|+|-- .=+.+ -.++.+.+|+++||++||+.-
T Consensus 116 ~aS~v~~~~~y~W~d~~~-~---~~~~~~~~e--~~vIYElHvGs~~~~~~~~~~e---~a~~llpYl~elG~T~IELMP 186 (628)
T COG0296 116 TASQVVDLPDYEWQDERW-D---RAWRGRFWE--PIVIYELHVGSFTPDRFLGYFE---LAIELLPYLKELGITHIELMP 186 (628)
T ss_pred CcceecCCCCcccccccc-c---ccccCCCCC--CceEEEEEeeeccCCCCcCHHH---HHHHHhHHHHHhCCCEEEEcc
Confidence 444555555566654433 1 122222222 44444 487644 11222 367778999999999999852
Q ss_pred ----------C---cc-------cCChhHHHHHHHHHHHCCCeEccccccccCCCCCCchhhhhc
Q 030024 123 ----------G---SL-------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF 167 (184)
Q Consensus 123 ----------G---ti-------~i~~~~r~~lI~~~~~~Gf~v~~EvG~K~~~~~~~~~~~~a~ 167 (184)
| +. ==++++..++|..+-++|+-|+--+ =-++-..+...|-.|
T Consensus 187 v~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~--V~~HF~~d~~~L~~f 249 (628)
T COG0296 187 VAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDW--VPNHFPPDGNYLARF 249 (628)
T ss_pred cccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEe--cCCcCCCCcchhhhc
Confidence 1 11 1157888999999999999996422 112323344455555
No 239
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=66.58 E-value=15 Score=32.81 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=49.3
Q ss_pred ccChhHHHHHHHHHHhCCc-eecC-ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCC
Q 030024 66 LMPKPFIEEVVKRAHQHDV-YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAG 143 (184)
Q Consensus 66 l~p~~~L~eKI~l~~~~gV-~v~~-GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G 143 (184)
-++.+.+++.|+.+++.|+ .|.. || |-.+ +. .+.+.++++++.|+...=++||++ |+.+ .++.+++.|
T Consensus 45 ~~~~e~~~~ii~~~~~~g~~~v~~~GG--EPll-~~--~~~~il~~~~~~g~~~~i~TNG~l-l~~~----~~~~L~~~g 114 (378)
T PRK05301 45 ELSTEEWIRVLREARALGALQLHFSGG--EPLL-RK--DLEELVAHARELGLYTNLITSGVG-LTEA----RLAALKDAG 114 (378)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEECC--ccCC-ch--hHHHHHHHHHHcCCcEEEECCCcc-CCHH----HHHHHHHcC
Confidence 4566778899999999997 3433 53 3322 22 588999999999998888889975 5543 355566677
Q ss_pred Ce
Q 030024 144 LK 145 (184)
Q Consensus 144 f~ 145 (184)
+.
T Consensus 115 ~~ 116 (378)
T PRK05301 115 LD 116 (378)
T ss_pred CC
Confidence 64
No 240
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=66.44 E-value=33 Score=30.34 Aligned_cols=28 Identities=29% Similarity=0.593 Sum_probs=21.9
Q ss_pred EEEeeCccccccChhHHHHHHHHHHhCC
Q 030024 56 GLKFSGGSHSLMPKPFIEEVVKRAHQHD 83 (184)
Q Consensus 56 ~lKfg~GTs~l~p~~~L~eKI~l~~~~g 83 (184)
-|-|.+|=-.+.|.+.+++.+++++++|
T Consensus 60 ~i~~~GGEPll~~~~~~~~~~~~~~~~~ 87 (370)
T PRK13758 60 SFAFQGGEPTLAGLEFFEELMELQRKHN 87 (370)
T ss_pred EEEEECCccccCChHHHHHHHHHHHHhc
Confidence 4567778777777677888999999886
No 241
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=66.37 E-value=56 Score=29.19 Aligned_cols=97 Identities=10% Similarity=0.112 Sum_probs=64.6
Q ss_pred HHHHHH--hhcccccEEEeeCccccccChhHHHHHHHHHHhCCceec----CccHHHHHHHhCCchHHHHHHHHHHcCCC
Q 030024 43 LEDIFE--SMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (184)
Q Consensus 43 leDlLe--~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~----~GtlfE~al~qg~~~~~~yl~~~k~lGF~ 116 (184)
++++++ ..-+|+..+.++.-..++.|.-+-.+.++.++++|+.++ .-+.-|. . +.+.+=++.+++.|+.
T Consensus 161 L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~Ei---~--d~~~~ai~~L~~~Gi~ 235 (321)
T TIGR03821 161 LDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHANEI---D--AEVADALAKLRNAGIT 235 (321)
T ss_pred HHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChHhC---c--HHHHHHHHHHHHcCCE
Confidence 666663 334677777665433567777777888888999886433 2123343 1 2577778888898975
Q ss_pred EEEecCCcccC-----ChhHHHHHHHHHHHCCCeEc
Q 030024 117 TIELNVGSLEI-----PEETLLRYVRLVKSAGLKAK 147 (184)
Q Consensus 117 ~IEISdGti~i-----~~~~r~~lI~~~~~~Gf~v~ 147 (184)
. .+-|+-+ +.++..++++.+.+.|.++.
T Consensus 236 v---~~qtvllkgiNDn~~~l~~L~~~l~~~gv~py 268 (321)
T TIGR03821 236 L---LNQSVLLRGVNDNADTLAALSERLFDAGVLPY 268 (321)
T ss_pred E---EecceeeCCCCCCHHHHHHHHHHHHHcCCeeC
Confidence 4 3344333 56888999999999998874
No 242
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=66.34 E-value=20 Score=29.49 Aligned_cols=75 Identities=16% Similarity=0.117 Sum_probs=45.3
Q ss_pred ChhHHHHHHHHHHhCCceecC--ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC---
Q 030024 68 PKPFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA--- 142 (184)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~~--GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~--- 142 (184)
+.+.+++-++.++.+|+.+.. -||-| ++.+.++|++.|=++.-.......+ .++++++++.
T Consensus 106 ~~~~~~~~~~~~~~~g~~~~v~v~~~~e-------------~~~~~~~g~~~i~~t~~~~~~~~~~-~~~~~~l~~~~~~ 171 (217)
T cd00331 106 DDEQLKELYELARELGMEVLVEVHDEEE-------------LERALALGAKIIGINNRDLKTFEVD-LNTTERLAPLIPK 171 (217)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEECCHHH-------------HHHHHHcCCCEEEEeCCCccccCcC-HHHHHHHHHhCCC
Confidence 335677777777888886543 25655 3446667888886663222222222 2555555543
Q ss_pred CCeEccccccccCC
Q 030024 143 GLKAKPKFAVMFNK 156 (184)
Q Consensus 143 Gf~v~~EvG~K~~~ 156 (184)
+..+..+.|+..++
T Consensus 172 ~~pvia~gGI~s~e 185 (217)
T cd00331 172 DVILVSESGISTPE 185 (217)
T ss_pred CCEEEEEcCCCCHH
Confidence 67889999997543
No 243
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=66.18 E-value=62 Score=26.23 Aligned_cols=104 Identities=23% Similarity=0.308 Sum_probs=60.6
Q ss_pred ecCCCCCCcchhHHHHHHHhhccc-ccEEEeeCcccccc-----ChhHHHHHHHHHH-hCCceecCccHHHHHHHhCCch
Q 030024 30 RSPHYTLSSSHNVLEDIFESMGQF-VDGLKFSGGSHSLM-----PKPFIEEVVKRAH-QHDVYVSTGDWAEHLIRNGPSA 102 (184)
Q Consensus 30 ~DkG~s~~~g~~~leDlLe~ag~y-ID~lKfg~GTs~l~-----p~~~L~eKI~l~~-~~gV~v~~GtlfE~al~qg~~~ 102 (184)
+.|++... .+..+.+.++.+-+. +|.|-|+----.+. ..+.+++.-+.+. ..+|.+.. + .
T Consensus 6 ~~~s~~~~-~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v----------~--d 72 (220)
T PRK05581 6 IAPSILSA-DFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMV----------E--N 72 (220)
T ss_pred EEcchhcC-CHHHHHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeee----------C--C
Confidence 55555444 444555556555554 88888843111111 1233444333332 22232221 1 3
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcccc
Q 030024 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (184)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~Ev 150 (184)
..+|++.|.+.|.+.|=|-++. .++..+.++.+++.|+++..=+
T Consensus 73 ~~~~i~~~~~~g~d~v~vh~~~----~~~~~~~~~~~~~~~~~~g~~~ 116 (220)
T PRK05581 73 PDRYVPDFAKAGADIITFHVEA----SEHIHRLLQLIKSAGIKAGLVL 116 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeecc----chhHHHHHHHHHHcCCEEEEEE
Confidence 5667888899999999888874 3566678999999998865533
No 244
>PRK09234 fbiC FO synthase; Reviewed
Probab=66.08 E-value=35 Score=34.85 Aligned_cols=93 Identities=22% Similarity=0.388 Sum_probs=52.5
Q ss_pred CccccccChhHHHHHHHHHHhC--CceecCccHHHHH---HHhCCchHHHHHHHHHHcCCCEE-----EecCCc------
Q 030024 61 GGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHL---IRNGPSAFKEYVEDCKQVGFDTI-----ELNVGS------ 124 (184)
Q Consensus 61 ~GTs~l~p~~~L~eKI~l~~~~--gV~v~~GtlfE~a---l~qg~~~~~~yl~~~k~lGF~~I-----EISdGt------ 124 (184)
.|...-.+.+.+.+.++..|+. +|.+..=+=.|+. ..-| -..+++++.+|+.|.+.+ ||-+--
T Consensus 581 gG~~p~~~~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~G-l~~~e~l~~LkeAGLds~pgt~aeil~d~vr~~i~ 659 (843)
T PRK09234 581 GGIHPELPGTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLG-LSIREWLTALREAGLDTIPGTAAEILDDEVRWVLT 659 (843)
T ss_pred cCCCCCcCHHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcC-CCHHHHHHHHHHhCcCccCCCchhhCCHHHHhhcC
Confidence 4544434455555666666654 4555432334444 2222 256777777777777776 222210
Q ss_pred -ccCChhHHHHHHHHHHHCCCeEccccccccCC
Q 030024 125 -LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK 156 (184)
Q Consensus 125 -i~i~~~~r~~lI~~~~~~Gf~v~~EvG~K~~~ 156 (184)
-.++.++|++.|+.+++.|+++-+ |.-++.
T Consensus 660 p~k~~~~~wle~i~~Ah~lGi~~~s--tmm~G~ 690 (843)
T PRK09234 660 KGKLPTAEWIEVVTTAHEVGLRSSS--TMMYGH 690 (843)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCccc--ceEEcC
Confidence 034667777888888888877755 444444
No 245
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=66.05 E-value=15 Score=37.13 Aligned_cols=68 Identities=25% Similarity=0.351 Sum_probs=49.1
Q ss_pred ChhHHHHHHHHHHhCCceec--CccHHHHHHHhCCchHHHHHHHHHHcCCCE---E---Ee--------------cCCcc
Q 030024 68 PKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDT---I---EL--------------NVGSL 125 (184)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~--~GtlfE~al~qg~~~~~~yl~~~k~lGF~~---I---EI--------------SdGti 125 (184)
+++-.++-|+.+|+.||.|. +|.=-+.|.. -|+++|++. + |+ -+-+-
T Consensus 516 ~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~a-----------IA~~lGI~~~~v~~g~~l~~~~~~el~~~~~~~~vfA 584 (867)
T TIGR01524 516 PKESTKEAIAALFKNGINVKVLTGDNEIVTAR-----------ICQEVGIDANDFLLGADIEELSDEELARELRKYHIFA 584 (867)
T ss_pred CchhHHHHHHHHHHCCCEEEEEcCCCHHHHHH-----------HHHHcCCCCCCeeecHhhhhCCHHHHHHHhhhCeEEE
Confidence 35568999999999999664 6865555532 378888851 1 00 02344
Q ss_pred cCChhHHHHHHHHHHHCCCeE
Q 030024 126 EIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 126 ~i~~~~r~~lI~~~~~~Gf~v 146 (184)
.+++++|.++|+..+++|-.|
T Consensus 585 r~~Pe~K~~iV~~lq~~G~vV 605 (867)
T TIGR01524 585 RLTPMQKSRIIGLLKKAGHTV 605 (867)
T ss_pred ECCHHHHHHHHHHHHhCCCEE
Confidence 689999999999999999876
No 246
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=66.04 E-value=14 Score=37.64 Aligned_cols=53 Identities=17% Similarity=0.121 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC--------------------ChhHHHHHHHHHHHCCCeEcccccccc
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGSLEI--------------------PEETLLRYVRLVKSAGLKAKPKFAVMF 154 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i--------------------~~~~r~~lI~~~~~~Gf~v~~EvG~K~ 154 (184)
.+.+-+.++++|||++|.+|-=+-.. +.++..++|+.++++|++|+-.+=..+
T Consensus 17 ~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH 89 (825)
T TIGR02401 17 DAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNH 89 (825)
T ss_pred HHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 35566788899999999887643321 378899999999999999976654333
No 247
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=65.86 E-value=10 Score=33.86 Aligned_cols=62 Identities=13% Similarity=0.079 Sum_probs=40.8
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhh-cccc--cEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHH
Q 030024 24 FGVTEMRSPHYTLSSSHNVLEDIFESM-GQFV--DGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHL 95 (184)
Q Consensus 24 ~GlT~V~DkG~s~~~g~~~leDlLe~a-g~yI--D~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~a 95 (184)
.++-+..|=.+ . ++..++.+++.- -++| |.-|.|+ +++ ..+.+++|+.|||.++++.+.+..
T Consensus 236 ~~ipia~~E~~--~-~~~~~~~~i~~~~~d~i~~~~~~~GG----it~---~~~ia~~A~~~gi~~~~h~~~~~~ 300 (355)
T cd03321 236 LRTPVQMGENW--L-GPEEMFKALSAGACDLVMPDLMKIGG----VTG---WLRASALAEQAGIPMSSHLFQEIS 300 (355)
T ss_pred cCCCEEEcCCC--c-CHHHHHHHHHhCCCCeEecCHhhhCC----HHH---HHHHHHHHHHcCCeecccchHHHH
Confidence 34555555543 4 777888888753 3332 4455665 332 677899999999999997666654
No 248
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=65.74 E-value=67 Score=28.96 Aligned_cols=51 Identities=20% Similarity=0.223 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHcCCCE-EEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCC
Q 030024 102 AFKEYVEDCKQVGFDT-IELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK 156 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~-IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG~K~~~ 156 (184)
.+.+.++++|++|++. +-+++. ...+++..+++++++.+.|-. .|...+..
T Consensus 115 ~~~~~i~~ak~~G~~v~~~l~~s-~~~~~e~l~~~a~~~~~~Ga~---~i~i~DT~ 166 (333)
T TIGR03217 115 VSEQHIGMARELGMDTVGFLMMS-HMTPPEKLAEQAKLMESYGAD---CVYIVDSA 166 (333)
T ss_pred HHHHHHHHHHHcCCeEEEEEEcc-cCCCHHHHHHHHHHHHhcCCC---EEEEccCC
Confidence 3456666666666654 222222 234556666666666666543 23444444
No 249
>PRK15108 biotin synthase; Provisional
Probab=65.49 E-value=53 Score=29.62 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHhCCceecC--ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHHHH
Q 030024 70 PFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYVRL 138 (184)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~--GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti---------~i~~~~r~~lI~~ 138 (184)
+.+.+.++.+++.++.++. |. .-++.++.+|+.|.|.+=+|=-|. .=+-++|++.|+.
T Consensus 111 e~i~~~i~~ik~~~i~v~~s~G~-----------ls~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~ 179 (345)
T PRK15108 111 PYLEQMVQGVKAMGLETCMTLGT-----------LSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEK 179 (345)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCc-----------CCHHHHHHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHH
Confidence 5677888888888876543 42 225666778888888766633221 2356788999999
Q ss_pred HHHCCCeEcc
Q 030024 139 VKSAGLKAKP 148 (184)
Q Consensus 139 ~~~~Gf~v~~ 148 (184)
+++.|+++.+
T Consensus 180 a~~~G~~v~s 189 (345)
T PRK15108 180 VRDAGIKVCS 189 (345)
T ss_pred HHHcCCceee
Confidence 9999987754
No 250
>PRK14706 glycogen branching enzyme; Provisional
Probab=65.20 E-value=14 Score=36.33 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=38.1
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc---------------cC-----ChhHHHHHHHHHHHCCCeEcccccccc
Q 030024 103 FKEYVEDCKQVGFDTIELNVGSL---------------EI-----PEETLLRYVRLVKSAGLKAKPKFAVMF 154 (184)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti---------------~i-----~~~~r~~lI~~~~~~Gf~v~~EvG~K~ 154 (184)
.++.++++|+||+++||++-=.- .+ +.++..++|+.+.++|++|+-.+=..+
T Consensus 170 ~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH 241 (639)
T PRK14706 170 AHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGH 241 (639)
T ss_pred HHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 34456789999999999864211 11 247888999999999999987654443
No 251
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=65.19 E-value=84 Score=28.49 Aligned_cols=93 Identities=12% Similarity=0.033 Sum_probs=59.2
Q ss_pred ccEEEeeCcccc--ccChhHHHHHHHHHHhCCceecC---c-cHHHHHHHhCCchHHHHHHHHHHcCCCEE--EecCCcc
Q 030024 54 VDGLKFSGGSHS--LMPKPFIEEVVKRAHQHDVYVST---G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTI--ELNVGSL 125 (184)
Q Consensus 54 ID~lKfg~GTs~--l~p~~~L~eKI~l~~~~gV~v~~---G-tlfE~al~qg~~~~~~yl~~~k~lGF~~I--EISdGti 125 (184)
+..+|.+..-.. ..+.+.|.+-.++++++|..+.. + ...|. . .+++.++.++..|.... -+|...-
T Consensus 181 a~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~e~---~---av~~~~~~a~~~g~r~~i~H~ss~~~ 254 (415)
T cd01297 181 ALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEGDSIL---E---ALDELLRLGRETGRPVHISHLKSAGA 254 (415)
T ss_pred CeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECcccccHH---H---HHHHHHHHHHHhCCCEEEEEEecCCC
Confidence 456775531121 46778899999999999998864 2 33332 2 57777888888775432 2222111
Q ss_pred --cCChhHHHHHHHHHHHCCCeEcccccc
Q 030024 126 --EIPEETLLRYVRLVKSAGLKAKPKFAV 152 (184)
Q Consensus 126 --~i~~~~r~~lI~~~~~~Gf~v~~EvG~ 152 (184)
.=...+..++|+++++.|..|..|+.-
T Consensus 255 ~~~~~~~~~l~~i~~a~~~G~~v~~e~~p 283 (415)
T cd01297 255 PNWGKIDRLLALIEAARAEGLQVTADVYP 283 (415)
T ss_pred cccchHHHHHHHHHHHHHhCCcEEEEeCC
Confidence 011233378899999999999888554
No 252
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=65.18 E-value=15 Score=33.08 Aligned_cols=28 Identities=14% Similarity=0.231 Sum_probs=24.8
Q ss_pred cCChhHHHHHHHHHHHCCCeEccccccc
Q 030024 126 EIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (184)
Q Consensus 126 ~i~~~~r~~lI~~~~~~Gf~v~~EvG~K 153 (184)
-.+.++..++|+.|+++|..|+|||-.-
T Consensus 82 ~YT~~di~eiv~yA~~rgI~VIPEID~P 109 (357)
T cd06563 82 FYTQEEIREIVAYAAERGITVIPEIDMP 109 (357)
T ss_pred eECHHHHHHHHHHHHHcCCEEEEecCCc
Confidence 4689999999999999999999998654
No 253
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=65.16 E-value=24 Score=27.82 Aligned_cols=96 Identities=17% Similarity=0.226 Sum_probs=47.0
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecC-ccHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 030024 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (184)
Q Consensus 39 g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~-GtlfE~al~qg~~~~~~yl~~~k~lGF~~ 117 (184)
|...+.-+|+.+|--+ +=+|-. .| ..+.++.+.++++.+-. -.+.- +....+.+.++.+++.|+..
T Consensus 19 G~~iv~~~lr~~G~eV--i~LG~~----vp---~e~i~~~a~~~~~d~V~lS~~~~----~~~~~~~~~~~~L~~~~~~~ 85 (137)
T PRK02261 19 GNKILDRALTEAGFEV--INLGVM----TS---QEEFIDAAIETDADAILVSSLYG----HGEIDCRGLREKCIEAGLGD 85 (137)
T ss_pred HHHHHHHHHHHCCCEE--EECCCC----CC---HHHHHHHHHHcCCCEEEEcCccc----cCHHHHHHHHHHHHhcCCCC
Confidence 4555666666665332 223321 11 44555555555553321 11111 11113455566666666633
Q ss_pred EE-ecCCcccCChhHHHHHHHHHHHCCCeEc
Q 030024 118 IE-LNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (184)
Q Consensus 118 IE-ISdGti~i~~~~r~~lI~~~~~~Gf~v~ 147 (184)
+- +=-|.+.++..++.+.++++++.||.+.
T Consensus 86 ~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~v 116 (137)
T PRK02261 86 ILLYVGGNLVVGKHDFEEVEKKFKEMGFDRV 116 (137)
T ss_pred CeEEEECCCCCCccChHHHHHHHHHcCCCEE
Confidence 32 3345566666666666666677666543
No 254
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=65.10 E-value=14 Score=31.72 Aligned_cols=77 Identities=9% Similarity=0.076 Sum_probs=43.8
Q ss_pred ChhHHHHHHHHHHhCCce-ec-CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCe
Q 030024 68 PKPFIEEVVKRAHQHDVY-VS-TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 68 p~~~L~eKI~l~~~~gV~-v~-~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (184)
+.+.+++-|+.+-++||. ++ .|+--|..... .+.-.+.++.+.+.-=+.+.|--|....+.++=.++++.+++.|..
T Consensus 19 D~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt-~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d 97 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVVCGTTGESPTLS-DEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGAD 97 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcchhhCC-HHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCC
Confidence 445577777777777772 22 35544543322 1233444443333321345666666667777777777777777766
No 255
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=65.09 E-value=58 Score=28.24 Aligned_cols=77 Identities=18% Similarity=0.144 Sum_probs=48.7
Q ss_pred HHHHHHHhhccc--ccEEEeeC--------ccccccChhHHHHHHHHHHhC-CceecCc-cHHHHHHHhCCchHHHHHHH
Q 030024 42 VLEDIFESMGQF--VDGLKFSG--------GSHSLMPKPFIEEVVKRAHQH-DVYVSTG-DWAEHLIRNGPSAFKEYVED 109 (184)
Q Consensus 42 ~leDlLe~ag~y--ID~lKfg~--------GTs~l~p~~~L~eKI~l~~~~-gV~v~~G-tlfE~al~qg~~~~~~yl~~ 109 (184)
.+.+..+.+-++ .|+|=+-. |.......+.+.+-++-.+++ +++|..= +. +.+.+.++.+.
T Consensus 105 ~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~-------~~~~~~~~a~~ 177 (301)
T PRK07259 105 EYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP-------NVTDIVEIAKA 177 (301)
T ss_pred HHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCC-------CchhHHHHHHH
Confidence 344444444455 67775511 555666777888888888887 6665541 11 11245677788
Q ss_pred HHHcCCCEEEecCCcc
Q 030024 110 CKQVGFDTIELNVGSL 125 (184)
Q Consensus 110 ~k~lGF~~IEISdGti 125 (184)
+.+.|.|.|.++|.+.
T Consensus 178 l~~~G~d~i~~~nt~~ 193 (301)
T PRK07259 178 AEEAGADGLSLINTLK 193 (301)
T ss_pred HHHcCCCEEEEEcccc
Confidence 8899999999877554
No 256
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=65.09 E-value=13 Score=30.64 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc---------CC---hhHHHHHHHHHHHCCCeEccccc
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGSLE---------IP---EETLLRYVRLVKSAGLKAKPKFA 151 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~---------i~---~~~r~~lI~~~~~~Gf~v~~EvG 151 (184)
..+++++.++++||++|-|--+--. ++ -+...++|+.++++|++|+.-+-
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h 83 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLH 83 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 6789999999999999987655311 11 14456789999999999976443
No 257
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=64.97 E-value=12 Score=32.63 Aligned_cols=50 Identities=14% Similarity=0.146 Sum_probs=41.1
Q ss_pred ceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHH
Q 030024 26 VTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAH 80 (184)
Q Consensus 26 lT~V~DkG~s~~~g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~ 80 (184)
|=.=+|+- .-....++++..++++|++|.|+=..+.+..++|++-.+..|
T Consensus 14 livaLD~~-----~~~~~~~~~~~~~~~~~~~Kvg~~l~~~~g~~~~~el~~~~~ 63 (240)
T COG0284 14 LIVALDVP-----TEEEALAFVDKLGPTVDFVKVGKPLVAFFGADILEELKARGK 63 (240)
T ss_pred eEEEECCC-----CHHHHHHHHHHhhccccEEEEchHHHHhccHHHHHHHHHhCC
Confidence 44445555 445668899999999999999999999999998999888876
No 258
>PRK03705 glycogen debranching enzyme; Provisional
Probab=64.92 E-value=12 Score=36.94 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=35.7
Q ss_pred HHHHHHHcCCCEEEecCCcc------------------------c----C------ChhHHHHHHHHHHHCCCeEccccc
Q 030024 106 YVEDCKQVGFDTIELNVGSL------------------------E----I------PEETLLRYVRLVKSAGLKAKPKFA 151 (184)
Q Consensus 106 yl~~~k~lGF~~IEISdGti------------------------~----i------~~~~r~~lI~~~~~~Gf~v~~EvG 151 (184)
.|+++++||+++||++==+- . . +.++..++|+.+.++|++|+-.+=
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV 263 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDVV 263 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEEc
Confidence 47899999999999842211 0 0 125788999999999999976654
Q ss_pred ccc
Q 030024 152 VMF 154 (184)
Q Consensus 152 ~K~ 154 (184)
..+
T Consensus 264 ~NH 266 (658)
T PRK03705 264 FNH 266 (658)
T ss_pred ccC
Confidence 444
No 259
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=64.81 E-value=11 Score=30.36 Aligned_cols=88 Identities=20% Similarity=0.254 Sum_probs=57.0
Q ss_pred ccEEEeeCccccccChhHHHHHHHHHHhCCceecCcc--HHHHHHHhCCchHHHHHHHHHHcCCC---EE--EecCCc-c
Q 030024 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGD--WAEHLIRNGPSAFKEYVEDCKQVGFD---TI--ELNVGS-L 125 (184)
Q Consensus 54 ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~Gt--lfE~al~qg~~~~~~yl~~~k~lGF~---~I--EISdGt-i 125 (184)
.=+||.+-|+..+-|. ...-++-|+++|+++ |. |+.. -.+..+..+.|++.++..+.+ ++ |-.++. -
T Consensus 24 fviiKateG~~y~D~~--~~~~~~~a~~aGl~~--G~Yhy~~~-~~~a~~qA~~f~~~~~~~~~~~~~~lD~E~~~~~~~ 98 (184)
T cd06525 24 VVYIKATEGTTFVDSY--FNENYNGAKAAGLKV--GFYHFLVG-TSNPEEQAENFYNTIKGKKMDLKPALDVEVNFGLSK 98 (184)
T ss_pred EEEEEecCCCcccCHh--HHHHHHHHHHCCCce--EEEEEeeC-CCCHHHHHHHHHHhccccCCCCCeEEEEecCCCCCH
Confidence 3468999999877666 999999999999854 42 3321 011112678899999988765 33 434331 0
Q ss_pred cCChhHHHHHHHHHHHC-CCeE
Q 030024 126 EIPEETLLRYVRLVKSA-GLKA 146 (184)
Q Consensus 126 ~i~~~~r~~lI~~~~~~-Gf~v 146 (184)
.--.+.-.++++++++. |.++
T Consensus 99 ~~~~~~~~~f~~~v~~~~G~~~ 120 (184)
T cd06525 99 DELNDYVLRFIEEFEKLSGLKV 120 (184)
T ss_pred HHHHHHHHHHHHHHHHHHCCCe
Confidence 11123346778888887 8887
No 260
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=64.81 E-value=68 Score=27.98 Aligned_cols=97 Identities=20% Similarity=0.249 Sum_probs=72.2
Q ss_pred hHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 030024 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (184)
Q Consensus 41 ~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEI 120 (184)
..+..+|+... +|.|=.| ++..+....+.=.+|.+.|+.++.= .|.+ .=.+++++.-+.||+++=|
T Consensus 76 e~L~~~l~~l~--~d~iv~G----aI~s~yqk~rve~lc~~lGl~~~~P-----LWg~---d~~ell~e~~~~Gf~~~Iv 141 (223)
T COG2102 76 EELKEALRRLK--VDGIVAG----AIASEYQKERVERLCEELGLKVYAP-----LWGR---DPEELLEEMVEAGFEAIIV 141 (223)
T ss_pred HHHHHHHHhCc--ccEEEEc----hhhhHHHHHHHHHHHHHhCCEEeec-----ccCC---CHHHHHHHHHHcCCeEEEE
Confidence 44555566666 8888777 4888988999999999999987742 2233 3567888889999999999
Q ss_pred cCCcccCCh---------hHHHHHHHHHHHCCCeEccccc
Q 030024 121 NVGSLEIPE---------ETLLRYVRLVKSAGLKAKPKFA 151 (184)
Q Consensus 121 SdGti~i~~---------~~r~~lI~~~~~~Gf~v~~EvG 151 (184)
+.-..-++. +...++....++.|+.+.-|-|
T Consensus 142 ~Vsa~gL~~~~lGr~i~~~~~e~l~~l~~~ygi~~~GEgG 181 (223)
T COG2102 142 AVSAEGLDESWLGRRIDREFLEELKSLNRRYGIHPAGEGG 181 (223)
T ss_pred EEeccCCChHHhCCccCHHHHHHHHHHHHhcCCCccCCCc
Confidence 988876665 4555666666777888877665
No 261
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=64.78 E-value=13 Score=36.90 Aligned_cols=49 Identities=16% Similarity=0.220 Sum_probs=36.6
Q ss_pred HHHHHHHcCCCEEEecCCcc-------------------cC-------------ChhHHHHHHHHHHHCCCeEccccccc
Q 030024 106 YVEDCKQVGFDTIELNVGSL-------------------EI-------------PEETLLRYVRLVKSAGLKAKPKFAVM 153 (184)
Q Consensus 106 yl~~~k~lGF~~IEISdGti-------------------~i-------------~~~~r~~lI~~~~~~Gf~v~~EvG~K 153 (184)
-|+++|+|||++|+++==+- .+ +.++..++|+.+.++|++|+-.+=..
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~N 268 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYN 268 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 37788999999999864221 11 35688999999999999997665444
Q ss_pred c
Q 030024 154 F 154 (184)
Q Consensus 154 ~ 154 (184)
+
T Consensus 269 H 269 (688)
T TIGR02100 269 H 269 (688)
T ss_pred C
Confidence 3
No 262
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=64.55 E-value=39 Score=25.35 Aligned_cols=84 Identities=14% Similarity=0.203 Sum_probs=58.4
Q ss_pred eeCccccccChhHHHHHHHHHHhCC-ceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc--------cCCh
Q 030024 59 FSGGSHSLMPKPFIEEVVKRAHQHD-VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL--------EIPE 129 (184)
Q Consensus 59 fg~GTs~l~p~~~L~eKI~l~~~~g-V~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti--------~i~~ 129 (184)
+|=||..-. .+..++..+.+++.+ ..|+.| ++| + +- .+++-+++|.+-|.+.|-|-=-++ +||-
T Consensus 6 vgHGSr~~~-~~~~~~l~~~l~~~~~~~v~~~-~lE-~--~P--~i~~~l~~l~~~G~~~i~lvPl~L~~G~H~~~Dipg 78 (103)
T cd03413 6 MGHGTDHPS-NAVYAALEYVLREEDPANVFVG-TVE-G--YP--GLDDVLAKLKKAGIKKVTLMPLMLVAGDHAHNDMAG 78 (103)
T ss_pred EECCCCchh-hhHHHHHHHHHHhcCCCcEEEE-EEc-C--CC--CHHHHHHHHHHcCCCEEEEEehhheecccchhcCCC
Confidence 455555443 355666666666554 445544 445 2 33 789999999999999988765544 7888
Q ss_pred hHHHHHHHHHHHCCCeEccc
Q 030024 130 ETLLRYVRLVKSAGLKAKPK 149 (184)
Q Consensus 130 ~~r~~lI~~~~~~Gf~v~~E 149 (184)
++--++-.++.+.|++|.+.
T Consensus 79 e~~~SW~~~l~~~g~~v~~~ 98 (103)
T cd03413 79 DEPDSWKSILEAAGIKVETV 98 (103)
T ss_pred CCchhHHHHHHHCCCeeEEE
Confidence 87668888888889999775
No 263
>PRK10551 phage resistance protein; Provisional
Probab=64.52 E-value=34 Score=32.41 Aligned_cols=98 Identities=11% Similarity=0.159 Sum_probs=63.3
Q ss_pred HHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecC---c-cHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 030024 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST---G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (184)
Q Consensus 43 leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~---G-tlfE~al~qg~~~~~~yl~~~k~lGF~~I 118 (184)
+..+++..+..-.-+.|-.--..+...+...+.++.+|++|+.+.. | |+-- +..++++.+|.|
T Consensus 370 l~~~l~~~~~~~~~LvlEItE~~~~~~~~~~~~l~~Lr~~G~~ialDDFGtg~ss-------------l~~L~~l~vD~l 436 (518)
T PRK10551 370 VQRLLASLPADHFQIVLEITERDMVQEEEATKLFAWLHSQGIEIAIDDFGTGHSA-------------LIYLERFTLDYL 436 (518)
T ss_pred HHHHHHhCCCCcceEEEEEechHhcCCHHHHHHHHHHHHCCCEEEEECCCCCchh-------------HHHHHhCCCCEE
Confidence 4445554443333344443333344445567888999999998886 4 2322 233567889999
Q ss_pred EecCCccc-CChh-----HHHHHHHHHHHCCCeEcccccccc
Q 030024 119 ELNVGSLE-IPEE-----TLLRYVRLVKSAGLKAKPKFAVMF 154 (184)
Q Consensus 119 EISdGti~-i~~~-----~r~~lI~~~~~~Gf~v~~EvG~K~ 154 (184)
-|+-.++. +..+ .-..+|+.+++.|++|..| |+..
T Consensus 437 KID~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAE-GVEt 477 (518)
T PRK10551 437 KIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAE-GVET 477 (518)
T ss_pred EECHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEE-eCCc
Confidence 99987774 3333 3356999999999999888 5554
No 264
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=64.41 E-value=59 Score=28.17 Aligned_cols=90 Identities=14% Similarity=0.249 Sum_probs=45.0
Q ss_pred HHHHHHHhhcccccEEEeeCcccc---------ccChhHHHHHHHHHH-hCCceecC--ccHHHHHHHhCCchHHHHHHH
Q 030024 42 VLEDIFESMGQFVDGLKFSGGSHS---------LMPKPFIEEVVKRAH-QHDVYVST--GDWAEHLIRNGPSAFKEYVED 109 (184)
Q Consensus 42 ~leDlLe~ag~yID~lKfg~GTs~---------l~p~~~L~eKI~l~~-~~gV~v~~--GtlfE~al~qg~~~~~~yl~~ 109 (184)
.+-..|+.+| ||+|=+||.+.. ..+.+.+++...+.+ +..+-+.. +. ...+.++.
T Consensus 24 ~ia~~L~~~G--Vd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------~~~~~l~~ 90 (266)
T cd07944 24 AIYRALAAAG--IDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGN-----------DDIDLLEP 90 (266)
T ss_pred HHHHHHHHCC--CCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCC-----------CCHHHHHH
Confidence 4455677777 888888876542 233555666655543 22221111 11 11334455
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeE
Q 030024 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (184)
+.+.|++.|-|+...-. -+.-.+.|+.++++|++|
T Consensus 91 a~~~gv~~iri~~~~~~--~~~~~~~i~~ak~~G~~v 125 (266)
T cd07944 91 ASGSVVDMIRVAFHKHE--FDEALPLIKAIKEKGYEV 125 (266)
T ss_pred HhcCCcCEEEEeccccc--HHHHHHHHHHHHHCCCeE
Confidence 55555555555543322 223344555555555544
No 265
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=64.36 E-value=69 Score=28.47 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHcCCCEEE---ecCCcccCChhHHHHHHHHHHHCCCe
Q 030024 102 AFKEYVEDCKQVGFDTIE---LNVGSLEIPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IE---ISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (184)
.+.+-++.+++.|+...= +-.| +.-+.++..++++.+.+.|..
T Consensus 215 ~~~~ai~~L~~~Gi~v~~q~vLl~g-vNd~~~~l~~l~~~l~~~gv~ 260 (321)
T TIGR03822 215 EARAACARLIDAGIPMVSQSVLLRG-VNDDPETLAALMRAFVECRIK 260 (321)
T ss_pred HHHHHHHHHHHcCCEEEEEeeEeCC-CCCCHHHHHHHHHHHHhcCCe
Confidence 455555666666653211 1111 123445566666666666654
No 266
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=64.15 E-value=21 Score=31.10 Aligned_cols=76 Identities=17% Similarity=0.301 Sum_probs=48.3
Q ss_pred ChhHHHHHHHHHHhCCceecC--c-cHHHHHHHhCCchHHHHHHHHHHcCCC---EEEecCCcccCChhHHHHHHHHHHH
Q 030024 68 PKPFIEEVVKRAHQHDVYVST--G-DWAEHLIRNGPSAFKEYVEDCKQVGFD---TIELNVGSLEIPEETLLRYVRLVKS 141 (184)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~~--G-tlfE~al~qg~~~~~~yl~~~k~lGF~---~IEISdGti~i~~~~r~~lI~~~~~ 141 (184)
+.+.+++.++.++++|+++.. . +--| +...+++.++.+.+.|+. .|+=....-+.+.++..++++++++
T Consensus 187 s~e~l~~~~~~A~~~g~~v~~H~~e~~~~-----~~~~~~~~~~~~~~~g~~~~~~i~H~~~~~~~~~~~~~~~~~~l~~ 261 (398)
T cd01293 187 GEESLDTLFELAQEHGLDIDLHLDETDDP-----GSRTLEELAEEAERRGMQGRVTCSHATALGSLPEAEVSRLADLLAE 261 (398)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEeCCCCCc-----chhHHHHHHHHHHHhCCCCCEEeeecchhhcCCHHHHHHHHHHHHH
Confidence 457899999999999987764 2 2222 111445566677788873 2222222234456666788999999
Q ss_pred CCCeEcc
Q 030024 142 AGLKAKP 148 (184)
Q Consensus 142 ~Gf~v~~ 148 (184)
.|..+.+
T Consensus 262 ~g~~v~~ 268 (398)
T cd01293 262 AGISVVS 268 (398)
T ss_pred cCCeEEe
Confidence 9887743
No 267
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=64.06 E-value=9 Score=32.03 Aligned_cols=60 Identities=22% Similarity=0.375 Sum_probs=48.5
Q ss_pred CceecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeE
Q 030024 83 DVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 83 gV~v~~G-tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (184)
.+.|--| |.|+..+.+= .-+++++++.+.||+.+=|-=|--..--++..+.++ +..||++
T Consensus 5 ~vFVTVGtT~Fd~LI~~V--l~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~--k~~gl~i 65 (170)
T KOG3349|consen 5 TVFVTVGTTSFDDLISCV--LSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIR--KNGGLTI 65 (170)
T ss_pred EEEEEeccccHHHHHHHH--cCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhc--ccCCeEE
Confidence 4556669 7999999997 889999999999999988777666566666677777 7777776
No 268
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=63.76 E-value=32 Score=29.31 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHCCCeE
Q 030024 130 ETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 130 ~~r~~lI~~~~~~Gf~v 146 (184)
+++.+.++.+++.|++|
T Consensus 158 ~~~~~ai~~l~~~Gi~v 174 (296)
T TIGR00433 158 DDRVDTLENAKKAGLKV 174 (296)
T ss_pred HHHHHHHHHHHHcCCEE
Confidence 34444444555555443
No 269
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=63.69 E-value=24 Score=33.82 Aligned_cols=110 Identities=19% Similarity=0.290 Sum_probs=75.7
Q ss_pred CCCCCcchhHHHHHHHhhcccccEEEeeCccc---cccChhHHHHHHHHHHhCCceec----------Cc--cHHHHHHH
Q 030024 33 HYTLSSSHNVLEDIFESMGQFVDGLKFSGGSH---SLMPKPFIEEVVKRAHQHDVYVS----------TG--DWAEHLIR 97 (184)
Q Consensus 33 G~s~~~g~~~leDlLe~ag~yID~lKfg~GTs---~l~p~~~L~eKI~l~~~~gV~v~----------~G--tlfE~al~ 97 (184)
|.+-+ |-++|+.+-=-.=+|||.+=+=.|++ ++.++ --+.|+-+|++||+|+ .| .|+-.+|.
T Consensus 90 g~pS~-Gg~eF~aytFdyWQY~D~mVyWgGSsGEGii~tP--SaDVIDaaHrNGVPvlGt~Ffppk~ygg~~ewv~~mLk 166 (553)
T COG4724 90 GHPSV-GGEEFKAYTFDYWQYLDSMVYWGGSSGEGIIPTP--SADVIDAAHRNGVPVLGTLFFPPKNYGGDQEWVAEMLK 166 (553)
T ss_pred CCCCc-CcceeeeccccHHHhhhheeeecCcCCCccccCC--chhhhhhhhcCCCceeeeeecChhhcCchHHHHHHHHh
Confidence 44444 66666665555567999887765655 23333 4578999999999874 24 39999999
Q ss_pred hCCch----HHHHHHHHHHcCCCEEEecCCcccC---ChhHHHHHHHHHHHCCCe
Q 030024 98 NGPSA----FKEYVEDCKQVGFDTIELNVGSLEI---PEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 98 qg~~~----~~~yl~~~k~lGF~~IEISdGti~i---~~~~r~~lI~~~~~~Gf~ 145 (184)
|+.+- .++.++.+|-.|||.-=|+.-|.-. ..+....+|-..++.--+
T Consensus 167 ~dedGsfP~A~klv~vAkyYGfdGwFINqET~G~~~~~a~~M~~f~ly~ke~~~~ 221 (553)
T COG4724 167 QDEDGSFPIARKLVDVAKYYGFDGWFINQETTGDVKPLAEKMRQFMLYSKEYAAK 221 (553)
T ss_pred cCcCCCChhHHHHHHHHHhcCcceeEecccccCCCcchHHHHHHHHHHHHhcccc
Confidence 87432 7899999999999998887655433 223344777777765333
No 270
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=63.53 E-value=17 Score=37.35 Aligned_cols=55 Identities=16% Similarity=0.086 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC--------------------ChhHHHHHHHHHHHCCCeEccccccccCC
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGSLEI--------------------PEETLLRYVRLVKSAGLKAKPKFAVMFNK 156 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i--------------------~~~~r~~lI~~~~~~Gf~v~~EvG~K~~~ 156 (184)
.+.+-+.++++|||++|.+|-=+-.. +.++..++|+.++++|++|+-.+=..+.+
T Consensus 21 ~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~ 95 (879)
T PRK14511 21 DAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMA 95 (879)
T ss_pred HHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 35566778888999999887532211 45889999999999999997665544433
No 271
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=63.51 E-value=24 Score=30.48 Aligned_cols=69 Identities=19% Similarity=0.130 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCCCCCCchhhhhccccccCCCCCCC
Q 030024 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 179 (184)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG~K~~~~~~~~~~~~a~ga~~~~~~~~~~ 179 (184)
.++.++.+.+.|.|+|-|. ||..+..+.-.+++.++++..+-+.=|.|.-++-. +.+-||..|+==||.
T Consensus 16 ~~~~~~~~~~~gtdai~vG-GS~~vt~~~~~~~v~~ik~~~lPvilfp~~~~~i~-------~~aDa~l~~svlNs~ 84 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIG-GSQGVTYEKTDTLIEALRRYGLPIILFPSNPTNVS-------RDADALFFPSVLNSD 84 (223)
T ss_pred cHHHHHHHHhcCCCEEEEc-CCCcccHHHHHHHHHHHhccCCCEEEeCCCccccC-------cCCCEEEEEEeecCC
Confidence 5778899999999999885 89999999999999999998876665665443321 235667777754443
No 272
>PLN02361 alpha-amylase
Probab=63.23 E-value=19 Score=33.52 Aligned_cols=53 Identities=21% Similarity=0.254 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc-------------C-----ChhHHHHHHHHHHHCCCeEcccccccc
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGSLE-------------I-----PEETLLRYVRLVKSAGLKAKPKFAVMF 154 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~-------------i-----~~~~r~~lI~~~~~~Gf~v~~EvG~K~ 154 (184)
.+.+=+++++++||++|-|+--+-. + +.++..++|+.+.++|++|+..+=..+
T Consensus 30 ~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH 100 (401)
T PLN02361 30 NLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINH 100 (401)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEcccc
Confidence 4556677888899999888653321 1 346889999999999999977654443
No 273
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.12 E-value=16 Score=24.69 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=33.5
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCc-----------ccCC-hhHHHHHHHHHHHCCCeE
Q 030024 100 PSAFKEYVEDCKQVGFDTIELNVGS-----------LEIP-EETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGt-----------i~i~-~~~r~~lI~~~~~~Gf~v 146 (184)
|..+.++++...+ |.+.+||+-.. ++.+ .+...+++...++.|+.+
T Consensus 9 PG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 9 PGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEALGYPY 66 (68)
T ss_pred CCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 4477788887877 88888765432 2333 378889999999999875
No 274
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=63.09 E-value=8 Score=28.62 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=41.5
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccc
Q 030024 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPK 149 (184)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E 149 (184)
+.+.+|...+-+.|.+.|=.|-|-+. +...+.+|.+.++++|-++..|
T Consensus 70 ~~~~~~~~~~L~~G~~VVt~nk~ala-~~~~~~~L~~~A~~~g~~~~~e 117 (117)
T PF03447_consen 70 EAVAEYYEKALERGKHVVTANKGALA-DEALYEELREAARKNGVRIYYE 117 (117)
T ss_dssp HHHHHHHHHHHHTTCEEEES-HHHHH-SHHHHHHHHHHHHHHT-EEEEG
T ss_pred hHHHHHHHHHHHCCCeEEEECHHHhh-hHHHHHHHHHHHHHcCCEEEeC
Confidence 46788888999999999999999999 9999999999999999887654
No 275
>PRK11059 regulatory protein CsrD; Provisional
Probab=63.03 E-value=21 Score=34.16 Aligned_cols=79 Identities=15% Similarity=0.209 Sum_probs=0.0
Q ss_pred CCCCceeEe-cCCCCCCcchhHHHHHHHhhcccccEEEeeCc-----cccccChhHHHHHHHHHHhCCceecC-ccHHHH
Q 030024 22 RRFGVTEMR-SPHYTLSSSHNVLEDIFESMGQFVDGLKFSGG-----SHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEH 94 (184)
Q Consensus 22 R~~GlT~V~-DkG~s~~~g~~~leDlLe~ag~yID~lKfg~G-----Ts~l~p~~~L~eKI~l~~~~gV~v~~-GtlfE~ 94 (184)
|..|....+ |-|.+.. .+.++.++ -+|+||+--. ..--.+...++..+++||+.|+.|.- |
T Consensus 543 ~~~G~~iaiddfG~g~~-s~~~L~~l------~~d~iKid~s~v~~i~~~~~~~~~v~sli~~a~~~~i~viAeg----- 610 (640)
T PRK11059 543 RGLGCRLAVDQAGLTVV-STSYIKEL------NVELIKLHPSLVRNIHKRTENQLFVRSLVGACAGTETQVFATG----- 610 (640)
T ss_pred HHCCCEEEEECCCCCcc-cHHHHHhC------CCCEEEECHHHHhhhhcCchhHHHHHHHHHHHHHCCCeEEEEE-----
Q ss_pred HHHhCCchHHHHHHHHHHcCCCEE
Q 030024 95 LIRNGPSAFKEYVEDCKQVGFDTI 118 (184)
Q Consensus 95 al~qg~~~~~~yl~~~k~lGF~~I 118 (184)
... ++-++.++++|++.+
T Consensus 611 --VEt----~~~~~~l~~lGvd~~ 628 (640)
T PRK11059 611 --VES----REEWQTLQELGVSGG 628 (640)
T ss_pred --eCC----HHHHHHHHHhCCCee
No 276
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=62.94 E-value=17 Score=31.90 Aligned_cols=71 Identities=25% Similarity=0.317 Sum_probs=48.7
Q ss_pred ChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC-----hhHHHH---HHHHH
Q 030024 68 PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP-----EETLLR---YVRLV 139 (184)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~-----~~~r~~---lI~~~ 139 (184)
..+.|+..|+.+|+.||.|+. |+ + --.+-++.++++|-++||+-.|...-. .++..+ .-+.+
T Consensus 111 ~~~~l~~~i~~L~~~gIrVSL--Fi------d--P~~~qi~~A~~~GAd~VELhTG~yA~a~~~~~~~el~~~~~aa~~a 180 (239)
T PRK05265 111 QFDKLKPAIARLKDAGIRVSL--FI------D--PDPEQIEAAAEVGADRIELHTGPYADAKTEAEAAELERIAKAAKLA 180 (239)
T ss_pred CHHHHHHHHHHHHHCCCEEEE--Ee------C--CCHHHHHHHHHhCcCEEEEechhhhcCCCcchHHHHHHHHHHHHHH
Confidence 456799999999999999985 11 1 123446778999999999988876433 222222 33456
Q ss_pred HHCCCeEcc
Q 030024 140 KSAGLKAKP 148 (184)
Q Consensus 140 ~~~Gf~v~~ 148 (184)
++.|+.|..
T Consensus 181 ~~lGL~VnA 189 (239)
T PRK05265 181 ASLGLGVNA 189 (239)
T ss_pred HHcCCEEec
Confidence 677888854
No 277
>PLN02960 alpha-amylase
Probab=62.47 E-value=20 Score=37.00 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCCEEEecCCccc--------------------CChhHHHHHHHHHHHCCCeEcccccccc
Q 030024 104 KEYVEDCKQVGFDTIELNVGSLE--------------------IPEETLLRYVRLVKSAGLKAKPKFAVMF 154 (184)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~--------------------i~~~~r~~lI~~~~~~Gf~v~~EvG~K~ 154 (184)
++.+.++++||+++||++-=+-. =+.++..++|+.+.++|++|+-.+=-.+
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDvV~NH 490 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDIVHSY 490 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 44588999999999999743210 0356788999999999999987764433
No 278
>PRK07329 hypothetical protein; Provisional
Probab=62.18 E-value=23 Score=30.07 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHhCCc--eecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh--hHHHHHHHHHHHCCC
Q 030024 69 KPFIEEVVKRAHQHDV--YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE--ETLLRYVRLVKSAGL 144 (184)
Q Consensus 69 ~~~L~eKI~l~~~~gV--~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~--~~r~~lI~~~~~~Gf 144 (184)
.+.+++.++.++++|+ .+.++++.-.. ........++.|+++|...|=|+...-...+ ....+.++.+++.||
T Consensus 164 ~~~~~~i~~~~~~~~~~lEiNt~~~~~~~---~~~~~~~~l~~~~~~g~~~i~~gSDAH~~~~vg~~~~~a~~~l~~~g~ 240 (246)
T PRK07329 164 EPQLTRIFAKMIDNDLAFELNTKSMYLYG---NEGLYRYAIELYKQLGGKLFSIGSDAHKLEHYRYNFDDAQKLLKEHGI 240 (246)
T ss_pred HHHHHHHHHHHHHcCCeEEEECcccccCC---CCcchHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 3556777788888887 44555552111 1112355688888888766666666655444 345567777888887
Q ss_pred eEc
Q 030024 145 KAK 147 (184)
Q Consensus 145 ~v~ 147 (184)
+..
T Consensus 241 ~~~ 243 (246)
T PRK07329 241 KEI 243 (246)
T ss_pred ceE
Confidence 654
No 279
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=61.67 E-value=22 Score=33.77 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=33.4
Q ss_pred HHHHHHHHHHcCCCEEEecC---------Cc-----ccCC-----hhHHHHHHHHHHHCCCeEccccccc
Q 030024 103 FKEYVEDCKQVGFDTIELNV---------GS-----LEIP-----EETLLRYVRLVKSAGLKAKPKFAVM 153 (184)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISd---------Gt-----i~i~-----~~~r~~lI~~~~~~Gf~v~~EvG~K 153 (184)
+.+-|+++++|||++|.++- |. ..++ .++..+||+.|.++|++|+-.+=..
T Consensus 30 i~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~N 99 (539)
T TIGR02456 30 LTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLVLN 99 (539)
T ss_pred HHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEeccC
Confidence 33446667777777776642 11 1222 3688999999999999997654433
No 280
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=61.61 E-value=23 Score=31.22 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHhCCceecC--ccHHHHHHHhCCc----hHHHHHHHHHHcCCCEEEecCCc
Q 030024 69 KPFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPS----AFKEYVEDCKQVGFDTIELNVGS 124 (184)
Q Consensus 69 ~~~L~eKI~l~~~~gV~v~~--GtlfE~al~qg~~----~~~~yl~~~k~lGF~~IEISdGt 124 (184)
...+.+.|+.+|+.|++|.. |||-.......+. -++..++.+++.|||.|.|.=-.
T Consensus 59 ~~~~~~~i~~~q~~G~KVllSiGG~~~~~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~ 120 (312)
T cd02871 59 PAEFKADIKALQAKGKKVLISIGGANGHVDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLES 120 (312)
T ss_pred hHHHHHHHHHHHHCCCEEEEEEeCCCCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEeccc
Confidence 45689999999999997775 6543221111111 35566677888999999986433
No 281
>PLN02321 2-isopropylmalate synthase
Probab=61.49 E-value=18 Score=35.81 Aligned_cols=85 Identities=12% Similarity=0.077 Sum_probs=64.3
Q ss_pred EEEeeCccccccCh-----------hHHHHHHHHHHhCCc-eecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC
Q 030024 56 GLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG 123 (184)
Q Consensus 56 ~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV-~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdG 123 (184)
.+-+-..+|-++.+ +.+++-+++++++|. .|..+ .|.+..-+++.+-++++.+.+.|.+.|=|.|-
T Consensus 185 ~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs--~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DT 262 (632)
T PLN02321 185 RIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFS--PEDAGRSDPEFLYRILGEVIKAGATTLNIPDT 262 (632)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEe--cccCCCCCHHHHHHHHHHHHHcCCCEEEeccc
Confidence 35555566655422 236678889999987 35554 34444555668888999999999999999999
Q ss_pred cccCChhHHHHHHHHHHHC
Q 030024 124 SLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 124 ti~i~~~~r~~lI~~~~~~ 142 (184)
.--+.+.+-.++|+.++++
T Consensus 263 vG~~~P~~v~~li~~l~~~ 281 (632)
T PLN02321 263 VGYTLPSEFGQLIADIKAN 281 (632)
T ss_pred ccCCCHHHHHHHHHHHHHh
Confidence 9999999999999999876
No 282
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=61.32 E-value=31 Score=32.08 Aligned_cols=116 Identities=13% Similarity=0.123 Sum_probs=74.9
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEE---EeeCccccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C
Q 030024 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGL---KFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G 99 (184)
Q Consensus 27 T~V~DkG~s~~~g~~~leDlLe~ag~yID~l---Kfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g 99 (184)
|.-++=|-+..-.+..++.+++..-.+.+.- .+. .-.-|..+=.++++.++++|| .++.| ++=+..+.. |
T Consensus 117 ~iy~GGGTPs~L~~~~l~~ll~~i~~~~~l~~~~eit---iE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lg 193 (449)
T PRK09058 117 AVYFGGGTPTALSAEDLARLITALREYLPLAPDCEIT---LEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRAG 193 (449)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEE---EEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhC
Confidence 3445555433226788999999988876532 222 222345556799999999999 78889 777776643 2
Q ss_pred ----CchHHHHHHHHHHcCCCEEEecC--CcccCChhHHHHHHHHHHHCCCe
Q 030024 100 ----PSAFKEYVEDCKQVGFDTIELNV--GSLEIPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 100 ----~~~~~~yl~~~k~lGF~~IEISd--Gti~i~~~~r~~lI~~~~~~Gf~ 145 (184)
.+.+.+.++.+++.||..|-++= |.=.=+.+++.+-++.+.+.+..
T Consensus 194 R~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~~~ 245 (449)
T PRK09058 194 RKDDREEVLARLEELVARDRAAVVCDLIFGLPGQTPEIWQQDLAIVRDLGLD 245 (449)
T ss_pred CCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCCCHHHHHHHHHHHHhcCCC
Confidence 23466778888889987765432 22233456666777777776643
No 283
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=61.30 E-value=19 Score=31.54 Aligned_cols=72 Identities=25% Similarity=0.366 Sum_probs=48.8
Q ss_pred cChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh--h----HHHH---HHH
Q 030024 67 MPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE--E----TLLR---YVR 137 (184)
Q Consensus 67 ~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~--~----~r~~---lI~ 137 (184)
-..+.|++.|+.+|++||.|+. | =+| -.+-++.++++|-++||+-.|...-.. + +..+ .-+
T Consensus 107 ~~~~~l~~~i~~l~~~gI~VSL--F------iDP--d~~qi~~A~~~GAd~VELhTG~Ya~a~~~~~~~~el~~i~~aa~ 176 (234)
T cd00003 107 GQAEKLKPIIERLKDAGIRVSL--F------IDP--DPEQIEAAKEVGADRVELHTGPYANAYDKAEREAELERIAKAAK 176 (234)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE--E------eCC--CHHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHHH
Confidence 3456799999999999999985 1 111 134467799999999999988763331 1 2222 334
Q ss_pred HHHHCCCeEcc
Q 030024 138 LVKSAGLKAKP 148 (184)
Q Consensus 138 ~~~~~Gf~v~~ 148 (184)
.+.+.|+.|..
T Consensus 177 ~a~~~GL~VnA 187 (234)
T cd00003 177 LARELGLGVNA 187 (234)
T ss_pred HHHHcCCEEec
Confidence 56677888854
No 284
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=61.10 E-value=1.1e+02 Score=26.36 Aligned_cols=86 Identities=8% Similarity=0.122 Sum_probs=47.8
Q ss_pred ccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC-----
Q 030024 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP----- 128 (184)
Q Consensus 54 ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~----- 128 (184)
||.+=||- +..+...+..-++|.+.|+.++.= |++- .-.++++++-+.||++|=++.-...|+
T Consensus 86 v~~vv~Gd----I~s~~qr~~~e~v~~~lgl~~~~P------LW~~--~~~~ll~e~i~~G~~aiIv~v~a~gL~~~~LG 153 (223)
T TIGR00290 86 VEAVVFGA----IYSEYQKTRIERVCRELGLKSFAP------LWHR--DPEKLMEEFVEEKFEARIIAVAAEGLDESWLG 153 (223)
T ss_pred CCEEEECC----cccHHHHHHHHHHHHhcCCEEecc------ccCC--CHHHHHHHHHHcCCeEEEEEEecCCCChHHcC
Confidence 55554442 444444444445555555533321 1122 345689999999999998776665554
Q ss_pred ----hhHHHHHHHHHHHCCCeEccccc
Q 030024 129 ----EETLLRYVRLVKSAGLKAKPKFA 151 (184)
Q Consensus 129 ----~~~r~~lI~~~~~~Gf~v~~EvG 151 (184)
.+...++.+...+.|+-+.=|-|
T Consensus 154 r~i~~e~i~~L~~~~~~~gvd~~GEgG 180 (223)
T TIGR00290 154 RRIDRKMIDELKKLNEKYGIHPAGEGG 180 (223)
T ss_pred CcccHHHHHHHHHHHhccCCCccCCCc
Confidence 33344444444445777655544
No 285
>PRK09389 (R)-citramalate synthase; Provisional
Probab=61.05 E-value=27 Score=33.18 Aligned_cols=96 Identities=18% Similarity=0.157 Sum_probs=70.9
Q ss_pred HHHHHHHhhcccccEEEeeCccccccCh-----------hHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHH
Q 030024 42 VLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDC 110 (184)
Q Consensus 42 ~leDlLe~ag~yID~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~ 110 (184)
.++..+++ | +|.+-+...+|-++-+ +.+.+-|+.++++|..|..+- |.+....++.+.+.++.+
T Consensus 78 di~~a~~~-g--~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~--ed~~r~~~~~l~~~~~~~ 152 (488)
T PRK09389 78 DIDAALEC-D--VDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSG--EDASRADLDFLKELYKAG 152 (488)
T ss_pred HHHHHHhC-C--cCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEE--eeCCCCCHHHHHHHHHHH
Confidence 34444442 3 6778888888766422 346677889999998766531 334444555677788888
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 030024 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (184)
.+.|.+.|-+.|-.--+.+.+-.++|+.++++
T Consensus 153 ~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~ 184 (488)
T PRK09389 153 IEAGADRICFCDTVGILTPEKTYELFKRLSEL 184 (488)
T ss_pred HhCCCCEEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999875
No 286
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=60.99 E-value=20 Score=34.32 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=36.0
Q ss_pred HHHHHHcCCCEEEecCCcc----------cC----------ChhHHHHHHHHHHHCCCeEcccccccc
Q 030024 107 VEDCKQVGFDTIELNVGSL----------EI----------PEETLLRYVRLVKSAGLKAKPKFAVMF 154 (184)
Q Consensus 107 l~~~k~lGF~~IEISdGti----------~i----------~~~~r~~lI~~~~~~Gf~v~~EvG~K~ 154 (184)
|+++++||+++|+++=-+- .. +.++..++|+.+.++|++|+-.+=..+
T Consensus 117 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH 184 (542)
T TIGR02402 117 LPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYNH 184 (542)
T ss_pred hHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccCC
Confidence 6788999999999864311 00 246888999999999999976654443
No 287
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=60.80 E-value=37 Score=26.51 Aligned_cols=92 Identities=12% Similarity=-0.018 Sum_probs=65.1
Q ss_pred HHHHHH-hhcccccEEEeeCccccccChhHHHHHHHHHHhCCce--ecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 030024 43 LEDIFE-SMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY--VSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (184)
Q Consensus 43 leDlLe-~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~--v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IE 119 (184)
..++-. ..+++| +-|-.+ +++++.+ |.+ .+++.||. +..|-..+.|+.+- ...+.++||+.+=
T Consensus 53 ~~~l~~~~~~~~v-i~K~~~--saf~~t~-L~~---~L~~~gi~~lii~G~~T~~CV~~T-------a~~a~~~g~~v~v 118 (157)
T cd01012 53 VPELREVFPDAPV-IEKTSF--SCWEDEA-FRK---ALKATGRKQVVLAGLETHVCVLQT-------ALDLLEEGYEVFV 118 (157)
T ss_pred hHHHHhhCCCCCc-eecccc--cCcCCHH-HHH---HHHhcCCCEEEEEEeeccHHHHHH-------HHHHHHCCCEEEE
Confidence 444433 345544 568774 4455543 444 45688983 44487889988774 2346678999999
Q ss_pred ecCCcccCChhHHHHHHHHHHHCCCeEcc
Q 030024 120 LNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 120 ISdGti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (184)
++|++-+.+.+.....++..+..|-++.+
T Consensus 119 ~~Da~as~~~~~h~~al~~~~~~~~~v~~ 147 (157)
T cd01012 119 VADACGSRSKEDHELALARMRQAGAVLTT 147 (157)
T ss_pred EeeCCCCCCHHHHHHHHHHHHHCCCEEee
Confidence 99999999999999999999988877643
No 288
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=60.79 E-value=90 Score=26.36 Aligned_cols=115 Identities=17% Similarity=0.094 Sum_probs=70.0
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCce---------------ecCc
Q 030024 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY---------------VSTG 89 (184)
Q Consensus 25 GlT~V~DkG~s~~~g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~---------------v~~G 89 (184)
.++.+.+=|+ . ....++.+++ +| .|.+ -.||..+-+++.+++-.+.+.+-.|. |..-
T Consensus 74 ~ipv~~~GGi--~-s~~~~~~~l~-~G--a~~V--iigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~ 145 (253)
T PRK02083 74 FIPLTVGGGI--R-SVEDARRLLR-AG--ADKV--SINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTH 145 (253)
T ss_pred CCCEEeeCCC--C-CHHHHHHHHH-cC--CCEE--EEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEc
Confidence 4555555554 2 3455555666 33 4444 66788888888888766655221122 2222
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEe----cCCcccCChhHHHHHHHHHHHC-CCeEcccccccc
Q 030024 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL----NVGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMF 154 (184)
Q Consensus 90 tlfE~al~qg~~~~~~yl~~~k~lGF~~IEI----SdGti~i~~~~r~~lI~~~~~~-Gf~v~~EvG~K~ 154 (184)
+|.+. ......++.+.+.++|++.|=+ .+|+..-++ ..+|+.+++. ...++..=|...
T Consensus 146 ~~~~~----~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d---~~~i~~~~~~~~ipvia~GGv~s 208 (253)
T PRK02083 146 GGRKP----TGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYD---LELTRAVSDAVNVPVIASGGAGN 208 (253)
T ss_pred CCcee----cCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcC---HHHHHHHHhhCCCCEEEECCCCC
Confidence 34432 1225778889999999999888 457776664 3556665554 677777666654
No 289
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=60.64 E-value=11 Score=33.38 Aligned_cols=40 Identities=15% Similarity=0.293 Sum_probs=25.3
Q ss_pred HHHHHHHHHHcCCCEEEecCCccc------CChhHHHHHHHHHHHC
Q 030024 103 FKEYVEDCKQVGFDTIELNVGSLE------IPEETLLRYVRLVKSA 142 (184)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~------i~~~~r~~lI~~~~~~ 142 (184)
.-++++.+.+.|.+.||||.|..+ ++......+.+.+++.
T Consensus 243 ~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~ 288 (336)
T cd02932 243 SVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQE 288 (336)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhh
Confidence 445666777889999999988542 2233334555555554
No 290
>PRK14705 glycogen branching enzyme; Provisional
Probab=60.48 E-value=21 Score=38.05 Aligned_cols=50 Identities=20% Similarity=0.214 Sum_probs=37.6
Q ss_pred HHHHHHHHHHcCCCEEEecCCc----------ccC----------ChhHHHHHHHHHHHCCCeEcccccc
Q 030024 103 FKEYVEDCKQVGFDTIELNVGS----------LEI----------PEETLLRYVRLVKSAGLKAKPKFAV 152 (184)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGt----------i~i----------~~~~r~~lI~~~~~~Gf~v~~EvG~ 152 (184)
.++-++++|+|||++||++==+ -.. +.++..++|+.+.++|+.|+-.+=.
T Consensus 768 ~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~ 837 (1224)
T PRK14705 768 AKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVP 837 (1224)
T ss_pred HHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4455789999999999986321 111 4678899999999999999765433
No 291
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=60.35 E-value=53 Score=28.82 Aligned_cols=100 Identities=10% Similarity=0.220 Sum_probs=62.2
Q ss_pred HHHHHHHhhcccccEE-EeeCccccccChhHHHHHHHHHHhCCc---eecCccHHHHHH---HhCC---chHHHHHHHHH
Q 030024 42 VLEDIFESMGQFVDGL-KFSGGSHSLMPKPFIEEVVKRAHQHDV---YVSTGDWAEHLI---RNGP---SAFKEYVEDCK 111 (184)
Q Consensus 42 ~leDlLe~ag~yID~l-Kfg~GTs~l~p~~~L~eKI~l~~~~gV---~v~~GtlfE~al---~qg~---~~~~~yl~~~k 111 (184)
.+.++++...++ ..+ ++..-|. --.+.+.++.++++|+ .++.-|+=+..+ .++. +++-+-++.++
T Consensus 75 ~l~~li~~i~~~-~gi~~v~itTN----G~ll~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~ 149 (334)
T TIGR02666 75 DLVELVARLAAL-PGIEDIALTTN----GLLLARHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAAL 149 (334)
T ss_pred CHHHHHHHHHhc-CCCCeEEEEeC----chhHHHHHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHH
Confidence 466777765543 222 4444332 2335667888888876 444534433222 2122 34566677888
Q ss_pred HcCCCEEEecCCcc-cCChhHHHHHHHHHHHCCCeE
Q 030024 112 QVGFDTIELNVGSL-EIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 112 ~lGF~~IEISdGti-~i~~~~r~~lI~~~~~~Gf~v 146 (184)
+.|+..|.|+-=.+ .++.++..++++.+++.|+.+
T Consensus 150 ~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~gv~~ 185 (334)
T TIGR02666 150 AAGLEPVKLNTVVMRGVNDDEIVDLAEFAKERGVTL 185 (334)
T ss_pred HcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCCeE
Confidence 89998777764333 367888999999999999874
No 292
>PLN03059 beta-galactosidase; Provisional
Probab=59.92 E-value=17 Score=37.25 Aligned_cols=52 Identities=21% Similarity=0.505 Sum_probs=40.0
Q ss_pred CchHHHHHHHHHHcCCCEEE---------ecCCcccC-ChhHHHHHHHHHHHCCCeEccccc
Q 030024 100 PSAFKEYVEDCKQVGFDTIE---------LNVGSLEI-PEETLLRYVRLVKSAGLKAKPKFA 151 (184)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IE---------ISdGti~i-~~~~r~~lI~~~~~~Gf~v~~EvG 151 (184)
|+.-++-|+.+|..||++|| -..|..+. ...+..++|+.|++.||.|+-=.|
T Consensus 58 p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpG 119 (840)
T PLN03059 58 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIG 119 (840)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCC
Confidence 34677888999999999998 23444433 357788999999999999976554
No 293
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=59.76 E-value=20 Score=29.65 Aligned_cols=35 Identities=26% Similarity=0.456 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC--CCeE
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA--GLKA 146 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~--Gf~v 146 (184)
.+++|++.++++|++.|-|+| .-+++.+++. ++++
T Consensus 3 ~~~~~l~~l~~~g~dgi~v~~----------~g~~~~~k~~~~~~~i 39 (233)
T PF01136_consen 3 ELEKYLDKLKELGVDGILVSN----------PGLLELLKELGPDLKI 39 (233)
T ss_pred HHHHHHHHHHhCCCCEEEEcC----------HHHHHHHHHhCCCCcE
Confidence 689999999999999999998 6778888888 4444
No 294
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=59.74 E-value=29 Score=27.36 Aligned_cols=49 Identities=14% Similarity=0.256 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCCEEEecCCc---------------ccCChhHHHHHHHHHHHCCCeEccccc
Q 030024 103 FKEYVEDCKQVGFDTIELNVGS---------------LEIPEETLLRYVRLVKSAGLKAKPKFA 151 (184)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGt---------------i~i~~~~r~~lI~~~~~~Gf~v~~EvG 151 (184)
.++|++.+|+.|.++|=|..++ -.|..+-..++|+.++++|++|..=+.
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEe
Confidence 3688999999999999996662 246678888999999999999965433
No 295
>PRK08417 dihydroorotase; Provisional
Probab=59.69 E-value=1.3e+02 Score=27.03 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=25.4
Q ss_pred cCChhHHHHHHHHHHHCCCeEccccccccCC
Q 030024 126 EIPEETLLRYVRLVKSAGLKAKPKFAVMFNK 156 (184)
Q Consensus 126 ~i~~~~r~~lI~~~~~~Gf~v~~EvG~K~~~ 156 (184)
-++..+=.++|+.+++.|..|..|+....-.
T Consensus 202 hvS~~~~~~~i~~ak~~g~~vt~ev~ph~L~ 232 (386)
T PRK08417 202 TLALPRSLELLDKFKSEGEKLLKEVSIHHLI 232 (386)
T ss_pred eCCCHHHHHHHHHHHHCCCCEEEEechHHHe
Confidence 4677778899999999999999998876543
No 296
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=59.58 E-value=15 Score=34.47 Aligned_cols=64 Identities=20% Similarity=0.174 Sum_probs=45.6
Q ss_pred HHHHHHHHHhCCceecC--c-cHH---HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChh-----HHHHHHHHHH
Q 030024 72 IEEVVKRAHQHDVYVST--G-DWA---EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEE-----TLLRYVRLVK 140 (184)
Q Consensus 72 L~eKI~l~~~~gV~v~~--G-tlf---E~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~-----~r~~lI~~~~ 140 (184)
+++-++++|+|||+++. | |+. |..+ +.+-.+|+|-|=.|-.-+==.+. -|.+||++++
T Consensus 176 ~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l-----------~~~la~GaDLV~~SgdKllgGPqaGii~GkKelI~~lq 244 (395)
T COG1921 176 EEELVEIAHEKGLPVIVDLASGALVDKEPDL-----------REALALGADLVSFSGDKLLGGPQAGIIVGKKELIEKLQ 244 (395)
T ss_pred HHHHHHHHHHcCCCEEEecCCccccccccch-----------hHHHhcCCCEEEEecchhcCCCccceEechHHHHHHHH
Confidence 67799999999999997 6 565 4333 33678999999999654311111 2457789999
Q ss_pred HCCCeE
Q 030024 141 SAGLKA 146 (184)
Q Consensus 141 ~~Gf~v 146 (184)
+++++-
T Consensus 245 ~~~l~R 250 (395)
T COG1921 245 SHPLKR 250 (395)
T ss_pred hhhhhh
Confidence 987654
No 297
>PRK06852 aldolase; Validated
Probab=59.28 E-value=53 Score=29.68 Aligned_cols=82 Identities=9% Similarity=0.046 Sum_probs=53.5
Q ss_pred EEEeeCcccccc-----ChhHHHHHHHHHHhCC-----------ceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 030024 56 GLKFSGGSHSLM-----PKPFIEEVVKRAHQHD-----------VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (184)
Q Consensus 56 ~lKfg~GTs~l~-----p~~~L~eKI~l~~~~g-----------V~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IE 119 (184)
++|+..+|+... |...+---++-+-+.| +.+|+|.=.|.--.+ .+-+-.++|+++|+-.|-
T Consensus 96 Ilkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~---~l~~v~~ea~~~GlPll~ 172 (304)
T PRK06852 96 LVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLS---EAAQIIYEAHKHGLIAVL 172 (304)
T ss_pred EEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHH---HHHHHHHHHHHhCCcEEE
Confidence 588988776664 2123333355555554 688899767755555 578888999999999985
Q ss_pred --------ecCCcccCChhHHHHHHHHHHHCC
Q 030024 120 --------LNVGSLEIPEETLLRYVRLVKSAG 143 (184)
Q Consensus 120 --------ISdGti~i~~~~r~~lI~~~~~~G 143 (184)
|+|+. +.+.-....|.+.+.|
T Consensus 173 ~~yprG~~i~~~~---~~~~ia~aaRiaaELG 201 (304)
T PRK06852 173 WIYPRGKAVKDEK---DPHLIAGAAGVAACLG 201 (304)
T ss_pred EeeccCcccCCCc---cHHHHHHHHHHHHHHc
Confidence 23322 3345566667777777
No 298
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=59.07 E-value=48 Score=27.11 Aligned_cols=91 Identities=21% Similarity=0.308 Sum_probs=59.2
Q ss_pred HHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCcc--HHH----HHHHhCCchHHHHHHHHHHcCCC----
Q 030024 47 FESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGD--WAE----HLIRNGPSAFKEYVEDCKQVGFD---- 116 (184)
Q Consensus 47 Le~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~Gt--lfE----~al~qg~~~~~~yl~~~k~lGF~---- 116 (184)
+..+|-=.=+||.+-||..+-|. ..+-++-|+++|+++ |. |+. ..-.+. ..+-|++.++..|+.
T Consensus 17 ~~~~g~~fviiKateG~~~~d~~--~~~n~~~A~~aGl~v--G~Yhf~~~~~~~~~a~~--eA~~f~~~~~~~~l~~~~~ 90 (196)
T cd06415 17 YGQAGAKFAIVKISEGTNYVNPK--ASAQVSSAIANGKMT--GGYHFARFGGSVSQAKY--EADYFLNSAQQAGLPKGSY 90 (196)
T ss_pred HHhCCCcEEEEEEcCCCccCCcc--HHHHHHHHHHCCCee--EEEEEEecCCCHHHHHH--HHHHHHHHhhhcCCCCCCE
Confidence 55566556689999999988876 999999999999855 32 221 111111 345588889887765
Q ss_pred -E--EEecCCcccCChhHH----HHHHHHHHHCCCeE
Q 030024 117 -T--IELNVGSLEIPEETL----LRYVRLVKSAGLKA 146 (184)
Q Consensus 117 -~--IEISdGti~i~~~~r----~~lI~~~~~~Gf~v 146 (184)
+ ||-+++. +.+.. .++++++++.|.++
T Consensus 91 ~~lDvE~~~~~---~~~~~~~~~~~f~~~v~~~G~~~ 124 (196)
T cd06415 91 LALDYEQGSGN---SKAANTSAILAFMDTIKDAGYKP 124 (196)
T ss_pred EEEEEecCCCC---CHHHHHHHHHHHHHHHHHhCCCc
Confidence 3 4544432 33333 45667777778776
No 299
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=59.03 E-value=14 Score=31.40 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 030024 70 PFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (184)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~~yl~~~k~lGF~~IEI 120 (184)
..-.+.++.|+++||.+.|| |.-|+.- +.+.|.|.|=+
T Consensus 96 ~~~~~v~~~~~~~~i~~iPG~~T~~E~~~-------------A~~~Gad~vkl 135 (213)
T PRK06552 96 SFNRETAKICNLYQIPYLPGCMTVTEIVT-------------ALEAGSEIVKL 135 (213)
T ss_pred CCCHHHHHHHHHcCCCEECCcCCHHHHHH-------------HHHcCCCEEEE
Confidence 45567888999999999998 5666542 34688999888
No 300
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=59.02 E-value=20 Score=34.44 Aligned_cols=79 Identities=15% Similarity=0.121 Sum_probs=61.3
Q ss_pred HHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcccc
Q 030024 73 EEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (184)
Q Consensus 73 ~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~Ev 150 (184)
.+-|++++++|..|..+ .||+ +....++.+-+.++.+.+.|-+.|=|.|-.--+.+.+-.++|+.++++ +. .+.+
T Consensus 125 ~~~v~~ak~~g~~V~~~~e~f~D-~~r~~~~~l~~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~-~~-~~~i 201 (526)
T TIGR00977 125 YDTVAYLKRQGDEVIYDAEHFFD-GYKANPEYALATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRS-LK-QPQL 201 (526)
T ss_pred HHHHHHHHHcCCeEEEEeeeeee-cccCCHHHHHHHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHh-CC-CCEE
Confidence 45688999999988653 3543 334556789999999999999999999999888999999999999876 33 2345
Q ss_pred cccc
Q 030024 151 AVMF 154 (184)
Q Consensus 151 G~K~ 154 (184)
+..+
T Consensus 202 ~vH~ 205 (526)
T TIGR00977 202 GIHA 205 (526)
T ss_pred EEEE
Confidence 6654
No 301
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=58.91 E-value=42 Score=30.05 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=57.5
Q ss_pred EEeeCccccccChhHHHHHHHHHHhC-CceecC--c-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-------
Q 030024 57 LKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVST--G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL------- 125 (184)
Q Consensus 57 lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~v~~--G-tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti------- 125 (184)
.|=|+|++.+-..+.+.+.++-.+++ +++|+- - +|-... .. +..-++.+.+.+.|.++|.|.-.|.
T Consensus 96 ~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~-~~--~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg 172 (318)
T TIGR00742 96 QNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLD-SY--EFLCDFVEIVSGKGCQNFIVHARKAWLSGLSP 172 (318)
T ss_pred CCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcc-hH--HHHHHHHHHHHHcCCCEEEEeCCchhhcCCCc
Confidence 56688999999999999999999875 666654 2 332111 11 1456788889999999999999884
Q ss_pred ----cCChhHHHHHHHHHHHC
Q 030024 126 ----EIPEETLLRYVRLVKSA 142 (184)
Q Consensus 126 ----~i~~~~r~~lI~~~~~~ 142 (184)
.+++-++ +.|+++++.
T Consensus 173 ~~~~~~~~~~~-~~i~~vk~~ 192 (318)
T TIGR00742 173 KENREIPPLRY-ERVYQLKKD 192 (318)
T ss_pred cccccCCchhH-HHHHHHHHh
Confidence 1233244 678777764
No 302
>PRK06886 hypothetical protein; Validated
Probab=58.85 E-value=92 Score=28.09 Aligned_cols=31 Identities=16% Similarity=-0.008 Sum_probs=19.5
Q ss_pred CceeEe-----cCCCCCCcchhHHHHHHHhhcccccE
Q 030024 25 GVTEMR-----SPHYTLSSSHNVLEDIFESMGQFVDG 56 (184)
Q Consensus 25 GlT~V~-----DkG~s~~~g~~~leDlLe~ag~yID~ 56 (184)
|.|.|| ||...+. +++.+..+-+...+.||+
T Consensus 82 Gtt~iRtHvdvd~~~~l~-~~~a~~~~r~~~~~~idl 117 (329)
T PRK06886 82 GVTAFGTFVDIDPICEDR-AIIAAHKAREVYKHDIIL 117 (329)
T ss_pred CcccEeeeeccCCCcccc-HHHHHHHHHHHhcCcceE
Confidence 666554 6654445 666666666677777774
No 303
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=58.83 E-value=41 Score=32.38 Aligned_cols=110 Identities=14% Similarity=0.080 Sum_probs=80.8
Q ss_pred CCceeEe----cCCCCCCcchhHHHHHHHhhc-ccccEEEeeCccccccChhHHHHHHHHHHhCCcee----c-CccHHH
Q 030024 24 FGVTEMR----SPHYTLSSSHNVLEDIFESMG-QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV----S-TGDWAE 93 (184)
Q Consensus 24 ~GlT~V~----DkG~s~~~g~~~leDlLe~ag-~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v----~-~GtlfE 93 (184)
+-+.|.. -+||... .-.-.+..++.+. .-||++-+.-..+-+ +.++.-|+.++++|-.+ | +++-
T Consensus 77 t~lqmL~Rg~N~vGy~~y-~ddvv~~fv~~a~~~Gidi~RIfd~lndv---~nl~~ai~~vk~ag~~~~~~i~yt~sp-- 150 (499)
T PRK12330 77 SRLQMLLRGQNLLGYRHY-EDEVVDRFVEKSAENGMDVFRVFDALNDP---RNLEHAMKAVKKVGKHAQGTICYTVSP-- 150 (499)
T ss_pred CeEEEEEcccccCCccCc-chhHHHHHHHHHHHcCCCEEEEEecCChH---HHHHHHHHHHHHhCCeEEEEEEEecCC--
Confidence 3455555 3566444 4445555666544 569999998876666 55888899999998854 2 2321
Q ss_pred HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 030024 94 HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 94 ~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (184)
...++.+-++.+.+.+.|.+.|=|.|-.--+.+.+-.++|+.++++
T Consensus 151 ---~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~ 196 (499)
T PRK12330 151 ---IHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEA 196 (499)
T ss_pred ---CCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHh
Confidence 2244567777788889999999999999999999999999999986
No 304
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=58.68 E-value=37 Score=31.55 Aligned_cols=72 Identities=24% Similarity=0.332 Sum_probs=52.4
Q ss_pred ccEEEeeCccccccChhHHHHHHHHHHhCCceecCc---cHHHHHHHhCC---------chHHHHHHHHHHcCCCEEEec
Q 030024 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRNGP---------SAFKEYVEDCKQVGFDTIELN 121 (184)
Q Consensus 54 ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G---tlfE~al~qg~---------~~~~~yl~~~k~lGF~~IEIS 121 (184)
+|-+.+-=|. +-.++.+++.++.|+++|+++--| |-+|.-+.+.- .+.=.+.+.|.++||+-|-||
T Consensus 96 ~~k~RINPGN--ig~~~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i~iS 173 (361)
T COG0821 96 VDKVRINPGN--IGFKDRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDIKVS 173 (361)
T ss_pred cceEEECCcc--cCcHHHHHHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 8999887777 445667999999999999998876 44555444410 123456788999999999888
Q ss_pred CCcccC
Q 030024 122 VGSLEI 127 (184)
Q Consensus 122 dGti~i 127 (184)
--.-+.
T Consensus 174 ~K~Sdv 179 (361)
T COG0821 174 VKASDV 179 (361)
T ss_pred EEcCCH
Confidence 655443
No 305
>PRK15108 biotin synthase; Provisional
Probab=58.67 E-value=15 Score=33.06 Aligned_cols=73 Identities=21% Similarity=0.389 Sum_probs=46.1
Q ss_pred cccChhHHHHHHHHHHhCCc-eecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 030024 65 SLMPKPFIEEVVKRAHQHDV-YVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 65 ~l~p~~~L~eKI~l~~~~gV-~v~~G-tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (184)
.+++.+.+.+++..+.+.|| .++.| +|.+- ....-+.+.+-++.+|+.|...+ +|.|. ++. +.+++.++.
T Consensus 74 ~~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p-~~~~~e~i~~~i~~ik~~~i~v~-~s~G~--ls~----e~l~~LkeA 145 (345)
T PRK15108 74 RLMEVEQVLESARKAKAAGSTRFCMGAAWKNP-HERDMPYLEQMVQGVKAMGLETC-MTLGT--LSE----SQAQRLANA 145 (345)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEEecCCCC-CcchHHHHHHHHHHHHhCCCEEE-EeCCc--CCH----HHHHHHHHc
Confidence 34566678888888889999 55544 45221 11111246666777888888655 88885 443 344566778
Q ss_pred CCe
Q 030024 143 GLK 145 (184)
Q Consensus 143 Gf~ 145 (184)
|+.
T Consensus 146 Gld 148 (345)
T PRK15108 146 GLD 148 (345)
T ss_pred CCC
Confidence 886
No 306
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=58.52 E-value=92 Score=27.68 Aligned_cols=103 Identities=14% Similarity=0.165 Sum_probs=66.6
Q ss_pred hHHHHHHHhhc--ccccEEEeeCccccccChhHHHHHHHHHHhCC-ce-ecCcc-HHHHHHHhCCc-hHHHHHHHHHHcC
Q 030024 41 NVLEDIFESMG--QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-VY-VSTGD-WAEHLIRNGPS-AFKEYVEDCKQVG 114 (184)
Q Consensus 41 ~~leDlLe~ag--~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~g-V~-v~~Gt-lfE~al~qg~~-~~~~yl~~~k~lG 114 (184)
..++.+++... .-|.-|-|++|--.+.+.+.|.+-++.+++.+ |. +-.|| .. ..+|. --++.++.+++.|
T Consensus 122 ~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~----v~~p~rit~ell~~L~~~g 197 (321)
T TIGR03822 122 AELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVP----VADPARVTPALIAALKTSG 197 (321)
T ss_pred HHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCc----ccChhhcCHHHHHHHHHcC
Confidence 45555555332 24677889999999988778999999999876 21 22343 11 11111 2357777888889
Q ss_pred CCEEEecCCcc---cCChhHHHHHHHHHHHCCCeEccc
Q 030024 115 FDTIELNVGSL---EIPEETLLRYVRLVKSAGLKAKPK 149 (184)
Q Consensus 115 F~~IEISdGti---~i~~~~r~~lI~~~~~~Gf~v~~E 149 (184)
.. +-||--+. .+. ++-.+.|+++++.|+.+.-.
T Consensus 198 ~~-v~i~l~~~h~~el~-~~~~~ai~~L~~~Gi~v~~q 233 (321)
T TIGR03822 198 KT-VYVALHANHARELT-AEARAACARLIDAGIPMVSQ 233 (321)
T ss_pred Cc-EEEEecCCChhhcC-HHHHHHHHHHHHcCCEEEEE
Confidence 65 45654442 233 55568999999999987554
No 307
>PRK13404 dihydropyrimidinase; Provisional
Probab=58.51 E-value=99 Score=28.88 Aligned_cols=82 Identities=17% Similarity=0.207 Sum_probs=51.7
Q ss_pred cChhHHHHHHHHHHhCCceecC---c-cHHH----HHHHhCC----------------chHHHHHHHHHHcCCCEEEecC
Q 030024 67 MPKPFIEEVVKRAHQHDVYVST---G-DWAE----HLIRNGP----------------SAFKEYVEDCKQVGFDTIELNV 122 (184)
Q Consensus 67 ~p~~~L~eKI~l~~~~gV~v~~---G-tlfE----~al~qg~----------------~~~~~yl~~~k~lGF~~IEISd 122 (184)
++.+.+++-++.+|++|++|.. . .+++ .+...|. ..+.+.++.+++.|...-
T Consensus 163 ~~~~~l~~~~~~a~~~g~~V~~Hae~~~~i~~~~~~~~~~G~~~~~~~~~~rp~~~E~~~v~~~~~la~~~g~~~h---- 238 (477)
T PRK13404 163 LDDRQILDVLAVARRHGAMVMVHAENHDMIAWLTKRLLAAGLTAPKYHAISRPMLAEREATHRAIALAELVDVPIL---- 238 (477)
T ss_pred CCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHCCCcchhhccccCCHHHHHHHHHHHHHHHHHhCCCEE----
Confidence 4456677777888888876653 2 2332 2222220 135566667777776541
Q ss_pred CcccCChhHHHHHHHHHHHCCCeEccccccc
Q 030024 123 GSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (184)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~Gf~v~~EvG~K 153 (184)
..-++...-.++|+.+++.|+.+..|+-..
T Consensus 239 -i~Hvs~~~~~~~i~~~k~~g~~vt~e~~ph 268 (477)
T PRK13404 239 -IVHVSGREAAEQIRRARGRGLKIFAETCPQ 268 (477)
T ss_pred -EEECCCHHHHHHHHHHHHCCCeEEEEEChh
Confidence 234556677799999999999998887644
No 308
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=58.46 E-value=7.9 Score=33.79 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=24.8
Q ss_pred cCChhHHHHHHHHHHHCCCeEccccccc
Q 030024 126 EIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (184)
Q Consensus 126 ~i~~~~r~~lI~~~~~~Gf~v~~EvG~K 153 (184)
..+.++-.++|+.|+++|..|+|||-.-
T Consensus 69 ~yT~~di~~lv~yA~~~gI~VIPeid~P 96 (351)
T PF00728_consen 69 YYTKEDIRELVAYAKERGIEVIPEIDTP 96 (351)
T ss_dssp EBEHHHHHHHHHHHHHTT-EEEEEEEES
T ss_pred cCCHHHHHHHHHHHHHcCCceeeeccCc
Confidence 7888999999999999999999999764
No 309
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=58.46 E-value=1.1e+02 Score=32.93 Aligned_cols=92 Identities=12% Similarity=0.079 Sum_probs=69.4
Q ss_pred HHHHhhcccccEEEeeCccccccChhHHHHHHHHHHh----CCceecCcc----HHHHHHHh--------------CCch
Q 030024 45 DIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQ----HDVYVSTGD----WAEHLIRN--------------GPSA 102 (184)
Q Consensus 45 DlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~----~gV~v~~Gt----lfE~al~q--------------g~~~ 102 (184)
+.++.-+++||+ +.|...+..++.+++.+.+... .+|+++.-| -+|.+|.. +..+
T Consensus 392 ~qve~GA~iIDV---n~g~~~id~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ViEaaLk~~~G~~IINSIs~~~~~~~ 468 (1229)
T PRK09490 392 QQVENGAQIIDI---NMDEGMLDSEAAMVRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKCIQGKGIVNSISLKEGEEK 468 (1229)
T ss_pred HHHHCCCCEEEE---CCCCCCCCHHHHHHHHHHHHHhhhccCCceEEEeCCcHHHHHHHHhhcCCCCEEEeCCCCCCCcc
Confidence 344455777776 7888888888889999998885 589999863 68999975 2236
Q ss_pred HHHHHHHHHHcCCCEEEecC--CcccCChhHHHHHHHHH
Q 030024 103 FKEYVEDCKQVGFDTIELNV--GSLEIPEETLLRYVRLV 139 (184)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISd--Gti~i~~~~r~~lI~~~ 139 (184)
+++.+..|++.|...|=.-- .=+.-+.++|.++.+++
T Consensus 469 ~~~~~~l~~kyga~vV~m~~de~G~~~t~e~r~~ia~r~ 507 (1229)
T PRK09490 469 FIEHARLVRRYGAAVVVMAFDEQGQADTRERKIEICKRA 507 (1229)
T ss_pred HHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHH
Confidence 78899999999999886532 23777888888775443
No 310
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=58.35 E-value=13 Score=30.36 Aligned_cols=60 Identities=23% Similarity=0.318 Sum_probs=0.0
Q ss_pred CccHHHH-----HHHhCCchHHHHHHHHHHcCCCEE---------------Ee-cCCcccCChhHHHHHHHHHHHCCCeE
Q 030024 88 TGDWAEH-----LIRNGPSAFKEYVEDCKQVGFDTI---------------EL-NVGSLEIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 88 ~GtlfE~-----al~qg~~~~~~yl~~~k~lGF~~I---------------EI-SdGti~i~~~~r~~lI~~~~~~Gf~v 146 (184)
+|||+.. ...-+++.-++.+++.+++|++.| ++ +.++..-+.+-...+.+.|.+.|++|
T Consensus 2 tGtF~q~~~~d~~~~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv 81 (166)
T PF14488_consen 2 TGTFLQPWSWDIHQNWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKV 81 (166)
T ss_pred ceEEEccccchhhcCCCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEE
Q ss_pred c
Q 030024 147 K 147 (184)
Q Consensus 147 ~ 147 (184)
.
T Consensus 82 ~ 82 (166)
T PF14488_consen 82 F 82 (166)
T ss_pred E
No 311
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=58.19 E-value=23 Score=30.65 Aligned_cols=40 Identities=18% Similarity=0.127 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCC
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 144 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf 144 (184)
...++++.+.++||+.||+ |+...++.+ .++++.+++.++
T Consensus 21 ~k~~i~~~L~~~Gv~~IE~--G~~~~~~~~-~~~~~~~~~~~~ 60 (273)
T cd07941 21 DKLRIARKLDELGVDYIEG--GWPGSNPKD-TEFFARAKKLKL 60 (273)
T ss_pred HHHHHHHHHHHcCCCEEEe--cCCcCCHHH-HHHHHHHHHcCC
Confidence 5677888888899999998 333344444 466676666654
No 312
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=57.74 E-value=20 Score=32.65 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCe
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (184)
.--++.+.+.++||+.||+ |+-.++++++ +.|+.+.+.|+.
T Consensus 27 ~k~~ia~~L~~~GV~~IE~--G~p~~~~~~~-e~i~~i~~~~~~ 67 (378)
T PRK11858 27 EKLAIARMLDEIGVDQIEA--GFPAVSEDEK-EAIKAIAKLGLN 67 (378)
T ss_pred HHHHHHHHHHHhCCCEEEE--eCCCcChHHH-HHHHHHHhcCCC
Confidence 3456667778888888887 4666666665 566666666654
No 313
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=57.70 E-value=78 Score=27.88 Aligned_cols=100 Identities=15% Similarity=0.281 Sum_probs=67.3
Q ss_pred cchhHHHHHHHhhcccc----------cEEEeeCc------cccccChhHHHHHHHHHHhCCc---eecC-ccHHHHHHH
Q 030024 38 SSHNVLEDIFESMGQFV----------DGLKFSGG------SHSLMPKPFIEEVVKRAHQHDV---YVST-GDWAEHLIR 97 (184)
Q Consensus 38 ~g~~~leDlLe~ag~yI----------D~lKfg~G------Ts~l~p~~~L~eKI~l~~~~gV---~v~~-GtlfE~al~ 97 (184)
+|..+.+.+|-..-.+| -++|++.| ..++.| ++.-|+++++.|+ +++| ||+--.
T Consensus 90 tgag~sr~~Lg~~~T~vN~LvsPTG~~G~VkISTGp~Ss~~~~~iV~---vetAiaml~dmG~~SiKffPM~Gl~~l--- 163 (236)
T TIGR03581 90 TGVGTSRALLGQADTVINGLVSPTGTPGLVNISTGPLSSQGKEAIVP---IETAIAMLKDMGGSSVKFFPMGGLKHL--- 163 (236)
T ss_pred cchHHHHHHhCCccceEEEeecCCCccceEEeccCcccccCCCceee---HHHHHHHHHHcCCCeeeEeecCCcccH---
Confidence 45666777773333343 57899999 233444 7788999999886 8888 543110
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCe-Ecccc
Q 030024 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK-AKPKF 150 (184)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~-v~~Ev 150 (184)
+.+...-+.|.+-||- +| =|--|+.+...++++.+.+.|.+ |+|.+
T Consensus 164 ---eE~~avA~aca~~g~~-lE---PTGGIdl~Nf~~I~~i~ldaGv~kviPHI 210 (236)
T TIGR03581 164 ---EEYAAVAKACAKHGFY-LE---PTGGIDLDNFEEIVQIALDAGVEKVIPHV 210 (236)
T ss_pred ---HHHHHHHHHHHHcCCc-cC---CCCCccHHhHHHHHHHHHHcCCCeecccc
Confidence 0233344679999995 44 44556788888999999999986 67765
No 314
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=57.61 E-value=43 Score=30.51 Aligned_cols=105 Identities=13% Similarity=0.080 Sum_probs=61.8
Q ss_pred EEeeCcccc--ccChhHHHHHHHHHHhCCceecC--c-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-----cc
Q 030024 57 LKFSGGSHS--LMPKPFIEEVVKRAHQHDVYVST--G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-----LE 126 (184)
Q Consensus 57 lKfg~GTs~--l~p~~~L~eKI~l~~~~gV~v~~--G-tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGt-----i~ 126 (184)
+..+.+-+. -.+.+.+++-.++++++|+++.. + +-.|....... .=...++.+.++|+ ++..+ +.
T Consensus 190 v~~~~~p~~~~~~s~~~l~~~~~lA~~~g~~i~~H~~E~~~e~~~~~~~-~g~~~v~~l~~~Gl----l~~~~~~~H~~~ 264 (442)
T PRK07203 190 VEAMFGLHASFTLSDATLEKCREAVKETGRGYHIHVAEGIYDVSDSHKK-YGKDIVERLADFGL----LGEKTLAAHCIY 264 (442)
T ss_pred eEEEEccCCCcCcCHHHHHHHHHHHHHcCCcEEEEecCChHHHHHHHHH-cCCCHHHHHHhCCC----CCCCcEEEEeec
Confidence 444444332 23457899999999999998886 5 66665543320 01245677788885 23332 34
Q ss_pred CChhHHHHHHHHHHHCCCeE--ccccccccCCCCCCchhhhhcccc
Q 030024 127 IPEETLLRYVRLVKSAGLKA--KPKFAVMFNKSDIPSDRDRAFGAY 170 (184)
Q Consensus 127 i~~~~r~~lI~~~~~~Gf~v--~~EvG~K~~~~~~~~~~~~a~ga~ 170 (184)
++.++ ++.+++.|-.| .|..+.+.+..-.|+.++.+.|..
T Consensus 265 ~~~~d----~~~la~~g~~v~~~P~sn~~l~~g~~p~~~~~~~Gv~ 306 (442)
T PRK07203 265 LSDEE----IDLLKETDTFVVHNPESNMGNAVGYNPVLEMIKNGIL 306 (442)
T ss_pred CCHHH----HHHHHhcCCeEEECchhhhhcccCCCCHHHHHHCCCe
Confidence 45544 45556676664 566555555555566666655543
No 315
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=57.48 E-value=36 Score=30.32 Aligned_cols=86 Identities=16% Similarity=0.217 Sum_probs=57.9
Q ss_pred EEEeeCccccccChhHHHHHHHHHHhC-Cceec--C-ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-C--C
Q 030024 56 GLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVS--T-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-I--P 128 (184)
Q Consensus 56 ~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~v~--~-GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~-i--~ 128 (184)
..|-|.|++.+-+++.+.+.++-.++. +++|. . .||-+ ......++.+.+.+.|.+.|.|...+.+ + .
T Consensus 105 v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~-----~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G 179 (321)
T PRK10415 105 VNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAP-----EHRNCVEIAQLAEDCGIQALTIHGRTRACLFNG 179 (321)
T ss_pred HcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccC-----CcchHHHHHHHHHHhCCCEEEEecCccccccCC
Confidence 356777888888899999999988764 44444 2 35543 1124668888899999999999987642 1 1
Q ss_pred hhHHHHHHHHHHHC-CCeEc
Q 030024 129 EETLLRYVRLVKSA-GLKAK 147 (184)
Q Consensus 129 ~~~r~~lI~~~~~~-Gf~v~ 147 (184)
..++ ++|++++++ ...|+
T Consensus 180 ~a~~-~~i~~ik~~~~iPVI 198 (321)
T PRK10415 180 EAEY-DSIRAVKQKVSIPVI 198 (321)
T ss_pred CcCh-HHHHHHHHhcCCcEE
Confidence 2334 788887774 33343
No 316
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=57.31 E-value=22 Score=26.20 Aligned_cols=13 Identities=31% Similarity=0.675 Sum_probs=7.7
Q ss_pred HHHHHHHHHcCCC
Q 030024 104 KEYVEDCKQVGFD 116 (184)
Q Consensus 104 ~~yl~~~k~lGF~ 116 (184)
++|.+.++++||+
T Consensus 45 ~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 45 EEYAKKLKKLGIP 57 (101)
T ss_dssp HHHHHHHHHTTTT
T ss_pred HHHHHHHHhcCcC
Confidence 5555556666665
No 317
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=57.28 E-value=12 Score=32.19 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=32.3
Q ss_pred cccChhHHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 030024 65 SLMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (184)
Q Consensus 65 ~l~p~~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISd 122 (184)
++.|. +=.+.++.|++|||+++|| |--|+...- ++|++.+.+=-
T Consensus 89 iVsP~-~~~ev~~~a~~~~ip~~PG~~TptEi~~Al-------------e~G~~~lK~FP 134 (211)
T COG0800 89 IVSPG-LNPEVAKAANRYGIPYIPGVATPTEIMAAL-------------ELGASALKFFP 134 (211)
T ss_pred EECCC-CCHHHHHHHHhCCCcccCCCCCHHHHHHHH-------------HcChhheeecC
Confidence 35553 5678899999999999999 788876533 56777666533
No 318
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=57.13 E-value=12 Score=29.92 Aligned_cols=99 Identities=18% Similarity=0.240 Sum_probs=60.6
Q ss_pred hHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 030024 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (184)
Q Consensus 41 ~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEI 120 (184)
..+.+++ ..+..-.-+-|-.-...+.+...+.+.|+.+|++|+.++...+ ..+ ..-++.+..+.++.|.|
T Consensus 106 ~~l~~~l-~~~~~~~~l~lei~e~~~~~~~~~~~~l~~l~~~G~~i~ld~~-----g~~----~~~~~~l~~l~~~~ikl 175 (236)
T PF00563_consen 106 DWLSNLL-QYGLPPSRLVLEISENDLPNDAELLENLRRLRSLGFRIALDDF-----GSG----SSSLEYLASLPPDYIKL 175 (236)
T ss_dssp HHHHHHH-HTTGGGGGEEEEEEGHHHHHHHHHHHHHHHHHHCT-EEEEEEE-----TST----CGCHHHHHHHCGSEEEE
T ss_pred ccccccc-cccccccceEEEEechHhhhhHHHHHHHHHHHhcCceeEeeec-----cCC----cchhhhhhhccccccee
Confidence 3455555 5555555566665554333333355899999999999987433 011 11133477889999999
Q ss_pred cCCccc-C----ChhHHHHHHHHHHHCCCeEccc
Q 030024 121 NVGSLE-I----PEETLLRYVRLVKSAGLKAKPK 149 (184)
Q Consensus 121 SdGti~-i----~~~~r~~lI~~~~~~Gf~v~~E 149 (184)
|-..+. + .......+++.+++.|.+++.|
T Consensus 176 d~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 209 (236)
T PF00563_consen 176 DGSLVRDLSDEEAQSLLQSLINLAKSLGIKVIAE 209 (236)
T ss_dssp EHHGHTTTTSHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred ecccccccchhhHHHHHHHHHHHhhcccccccee
Confidence 988772 2 2333445777999999998775
No 319
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=57.06 E-value=30 Score=29.17 Aligned_cols=44 Identities=27% Similarity=0.395 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCCEEEec-CCcccCChhHHHHHHHHHHHCCCeE
Q 030024 103 FKEYVEDCKQVGFDTIELN-VGSLEIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 103 ~~~yl~~~k~lGF~~IEIS-dGti~i~~~~r~~lI~~~~~~Gf~v 146 (184)
=+++++.++.+||+++-+. |-+.+...+-..+-++.+++.|+..
T Consensus 64 ~~~~~~~L~~~G~d~vslANNH~~D~G~~gl~~Tl~~L~~~gi~~ 108 (250)
T PF09587_consen 64 PPEILDALKDAGFDVVSLANNHIFDYGEEGLLDTLEALDKAGIPY 108 (250)
T ss_pred CHHHHHHHHHcCCCEEEecCCCCccccHHHHHHHHHHHHHCCCcE
Confidence 4678999999999999997 7788999999999999999999775
No 320
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=57.02 E-value=92 Score=27.80 Aligned_cols=117 Identities=21% Similarity=0.284 Sum_probs=74.6
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccc--cEEEeeCccccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-CC
Q 030024 27 TEMRSPHYTLSSSHNVLEDIFESMGQFV--DGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-GP 100 (184)
Q Consensus 27 T~V~DkG~s~~~g~~~leDlLe~ag~yI--D~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g~ 100 (184)
|..++=|-+....+..++.+++..-.+- +.+.+ |.-.-|..+-.++++.++++|+ .++.| ++-+..+.. |.
T Consensus 54 ~i~~gGGtps~l~~~~l~~L~~~i~~~~~~~~~ei---tie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R 130 (374)
T PRK05799 54 SIFIGGGTPTYLSLEALEILKETIKKLNKKEDLEF---TVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYLGR 130 (374)
T ss_pred EEEECCCcccCCCHHHHHHHHHHHHhCCCCCCCEE---EEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHcCC
Confidence 3335555333225667777776654321 11222 2223466667899999999999 77778 666655532 21
Q ss_pred ----chHHHHHHHHHHcCCCE--EEecCCcccCChhHHHHHHHHHHHCCCeE
Q 030024 101 ----SAFKEYVEDCKQVGFDT--IELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 101 ----~~~~~yl~~~k~lGF~~--IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (184)
+.+.+-++.+++.||+. +-+--|.-.-+.++..+.++.+.+.|..-
T Consensus 131 ~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~ 182 (374)
T PRK05799 131 IHTFEEFLENYKLARKLGFNNINVDLMFGLPNQTLEDWKETLEKVVELNPEH 182 (374)
T ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHHhcCCCE
Confidence 23555677788999984 55666766678888999999999888553
No 321
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=57.00 E-value=25 Score=32.63 Aligned_cols=56 Identities=21% Similarity=0.309 Sum_probs=42.7
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceec
Q 030024 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS 87 (184)
Q Consensus 24 ~GlT~V~DkG~s~~~g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~ 87 (184)
+|.|.+.+.+-.+ --.+++.+++... +|.+|.|+ |.+.+.+..-++.++++|+++.
T Consensus 46 ~~~~~i~~~~~~~--~~~q~~a~~~d~~--~~~ik~G~----l~~~e~~~~i~~~~k~~g~~vv 101 (448)
T PRK08573 46 YEVRAIHDLPPEV--VAAQIEAVWEDMG--IDAAKTGM----LSNREIIEAVAKTVSKYGFPLV 101 (448)
T ss_pred CCceEEEECCHHH--HHHHHHHHHhcCC--CCEEEECC----cCCHHHHHHHHHHHHHcCCCEE
Confidence 5889999888522 1246666666555 68999997 6688999999999999998655
No 322
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=56.74 E-value=16 Score=31.49 Aligned_cols=47 Identities=30% Similarity=0.362 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHHHHHHHC-CCeEcc
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYVRLVKSA-GLKAKP 148 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti---------~i~~~~r~~lI~~~~~~-Gf~v~~ 148 (184)
.+.+..+.+++.|||.|||+-++- --+.+.-.++++.+++. ++.|..
T Consensus 103 ~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~v 159 (296)
T cd04740 103 EFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIV 159 (296)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEE
Confidence 445555667778999999975542 22345556788888877 554443
No 323
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=56.73 E-value=25 Score=31.46 Aligned_cols=44 Identities=25% Similarity=0.369 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHcCCCEEEec----------CCcccCChhHHHHHHHHHHHCCCeEc
Q 030024 102 AFKEYVEDCKQVGFDTIELN----------VGSLEIPEETLLRYVRLVKSAGLKAK 147 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEIS----------dGti~i~~~~r~~lI~~~~~~Gf~v~ 147 (184)
..++.++.++++||++|.|- .|.. +-+..-++|++++++|++|.
T Consensus 11 ~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~y--dF~~lD~~l~~a~~~Gi~vi 64 (374)
T PF02449_consen 11 EWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQY--DFSWLDRVLDLAAKHGIKVI 64 (374)
T ss_dssp HHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB-----HHHHHHHHHHHCTT-EEE
T ss_pred HHHHHHHHHHHcCCCEEEEEEechhhccCCCCee--ecHHHHHHHHHHHhccCeEE
Confidence 45555555555555555531 1222 22334455666666666653
No 324
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=56.65 E-value=21 Score=30.74 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcc
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (184)
-.+..++..|..|||.|-||.+-=.|..+.-+++|+...++-|.+-+
T Consensus 79 VaeRL~ei~K~~g~d~vRiSG~EP~l~~EHvlevIeLl~~~tFvlET 125 (228)
T COG5014 79 VAERLLEISKKRGCDLVRISGAEPILGREHVLEVIELLVNNTFVLET 125 (228)
T ss_pred HHHHHHHHHHhcCCcEEEeeCCCccccHHHHHHHHHhccCceEEEEe
Confidence 35667788899999999999999999999999999998887666543
No 325
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=56.44 E-value=74 Score=28.25 Aligned_cols=73 Identities=16% Similarity=0.273 Sum_probs=46.9
Q ss_pred HHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChh--HHHHHHHHHHHCCCeEcccccccc
Q 030024 77 KRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEE--TLLRYVRLVKSAGLKAKPKFAVMF 154 (184)
Q Consensus 77 ~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~--~r~~lI~~~~~~Gf~v~~EvG~K~ 154 (184)
.+++++.|+|+.= +-++ .=.+.+..|-+.||+.|=|.--.+++.+- .=.++++.++..|.-|-.|+|.=-
T Consensus 63 ~~a~~~~VPV~lH------LDH~--~~~~~i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~ 134 (276)
T cd00947 63 AAAERASVPVALH------LDHG--SSFELIKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIG 134 (276)
T ss_pred HHHHHCCCCEEEE------CCCC--CCHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeec
Confidence 4566666666640 0011 11245556778999999997655443332 223778889999999999999865
Q ss_pred CCC
Q 030024 155 NKS 157 (184)
Q Consensus 155 ~~~ 157 (184)
+..
T Consensus 135 g~e 137 (276)
T cd00947 135 GEE 137 (276)
T ss_pred Ccc
Confidence 444
No 326
>PLN02428 lipoic acid synthase
Probab=56.33 E-value=34 Score=31.47 Aligned_cols=71 Identities=17% Similarity=0.258 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhC--CceecCc---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEec------CCccc----CChhHHHHH
Q 030024 71 FIEEVVKRAHQH--DVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN------VGSLE----IPEETLLRY 135 (184)
Q Consensus 71 ~L~eKI~l~~~~--gV~v~~G---tlfE~al~qg~~~~~~yl~~~k~lGF~~IEIS------dGti~----i~~~~r~~l 135 (184)
...+.++.+|++ |+.+.+| |+-|. .+.+.+-++.++++|+|.+=|. .-.++ +++++..++
T Consensus 232 ~~Le~L~~ak~~~pGi~tkSg~MvGLGET-----~Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~ 306 (349)
T PLN02428 232 QSLDVLKHAKESKPGLLTKTSIMLGLGET-----DEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFW 306 (349)
T ss_pred HHHHHHHHHHHhCCCCeEEEeEEEecCCC-----HHHHHHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHH
Confidence 355666777777 7777664 45442 2257777777888888887773 33332 457777777
Q ss_pred HHHHHHCCCeE
Q 030024 136 VRLVKSAGLKA 146 (184)
Q Consensus 136 I~~~~~~Gf~v 146 (184)
=+.+.+.||+-
T Consensus 307 ~~~~~~~gf~~ 317 (349)
T PLN02428 307 REYGEEMGFRY 317 (349)
T ss_pred HHHHHHcCCce
Confidence 77788888763
No 327
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=56.24 E-value=8.1 Score=34.71 Aligned_cols=68 Identities=13% Similarity=0.311 Sum_probs=54.5
Q ss_pred hHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 030024 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (184)
Q Consensus 41 ~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEI 120 (184)
..++.++..|-.-|-++= =.+++-+++++.++.+.+.+|+||. .|-|. .+..|++.|.+++++.--+
T Consensus 137 E~vR~~I~~A~kVIAIVM-----D~FTD~dIf~DLleAa~kR~VpVYi------LLD~~--~~~~Fl~Mc~~~~v~~~~~ 203 (284)
T PF07894_consen 137 EVVRRMIQQAQKVIAIVM-----DVFTDVDIFCDLLEAANKRGVPVYI------LLDEQ--NLPHFLEMCEKLGVNLQHL 203 (284)
T ss_pred HHHHHHHHHhcceeEEEe-----eccccHHHHHHHHHHHHhcCCcEEE------Eechh--cChHHHHHHHHCCCChhhc
Confidence 356788888998887663 3578999999999999999999994 44555 8999999999999875443
Q ss_pred c
Q 030024 121 N 121 (184)
Q Consensus 121 S 121 (184)
.
T Consensus 204 ~ 204 (284)
T PF07894_consen 204 K 204 (284)
T ss_pred C
Confidence 3
No 328
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=56.24 E-value=23 Score=29.07 Aligned_cols=41 Identities=27% Similarity=0.481 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccc
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPK 149 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E 149 (184)
..+++++.|++.|.+.|.++++ .+ .++++.+++.++.+.+-
T Consensus 68 ~~~~~~~~~~~~g~d~v~l~~~---~~----~~~~~~~~~~~i~~i~~ 108 (236)
T cd04730 68 DFEALLEVALEEGVPVVSFSFG---PP----AEVVERLKAAGIKVIPT 108 (236)
T ss_pred CHHHHHHHHHhCCCCEEEEcCC---CC----HHHHHHHHHcCCEEEEe
Confidence 6788999999999999999987 22 35677777778877653
No 329
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=56.22 E-value=27 Score=35.56 Aligned_cols=68 Identities=18% Similarity=0.132 Sum_probs=48.6
Q ss_pred ChhHHHHHHHHHHhCCceec--CccHHHHHHHhCCchHHHHHHHHHHcCCCE-----E-----------------EecCC
Q 030024 68 PKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDT-----I-----------------ELNVG 123 (184)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~--~GtlfE~al~qg~~~~~~yl~~~k~lGF~~-----I-----------------EISdG 123 (184)
+++-.++-|+.+|++||.+. +|.=.+.|..= |+++|+.. | +=.+-
T Consensus 580 lr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~i-----------A~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~V 648 (941)
T TIGR01517 580 LRPGVREAVQECQRAGITVRMVTGDNIDTAKAI-----------ARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRV 648 (941)
T ss_pred CchhHHHHHHHHHHCCCEEEEECCCChHHHHHH-----------HHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeE
Confidence 34568899999999999765 68655555432 56666631 1 11134
Q ss_pred cccCChhHHHHHHHHHHHCCCeE
Q 030024 124 SLEIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 124 ti~i~~~~r~~lI~~~~~~Gf~v 146 (184)
+-.+++++|.++|+..++.|-.|
T Consensus 649 far~sPe~K~~iV~~lq~~g~vV 671 (941)
T TIGR01517 649 LARSSPLDKQLLVLMLKDMGEVV 671 (941)
T ss_pred EEECCHHHHHHHHHHHHHCCCEE
Confidence 56899999999999999999876
No 330
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=56.12 E-value=1.3e+02 Score=25.92 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=60.0
Q ss_pred chhHHHHHHHhhcccc-c-EEEeeCc-cccccChhHHHHHHHHHHhCCceecC--ccHHHHHHHhCCchHHHHHHHHHHc
Q 030024 39 SHNVLEDIFESMGQFV-D-GLKFSGG-SHSLMPKPFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQV 113 (184)
Q Consensus 39 g~~~leDlLe~ag~yI-D-~lKfg~G-Ts~l~p~~~L~eKI~l~~~~gV~v~~--GtlfE~al~qg~~~~~~yl~~~k~l 113 (184)
+....++.++.+-.|- | ++-++.+ ...-++.+.++.-.++++++|+.+.. |.. . ..++..+.++.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~E~------~---~~~~~~~a~~~~ 209 (325)
T cd01320 139 SPESAQETLELALKYRDKGVVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAHAGEA------G---GPESVRDALDLL 209 (325)
T ss_pred CHHHHHHHHHHHHhccCCCEEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEeCCCC------C---CHHHHHHHHHHc
Confidence 4445666665443331 1 4556553 22334667899999999999998876 421 0 111222233345
Q ss_pred CCCEEEecCCcccCChhHHHHHHHHHHHCCCeE--ccccccccCCC----CCCchhhhhcccc
Q 030024 114 GFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA--KPKFAVMFNKS----DIPSDRDRAFGAY 170 (184)
Q Consensus 114 GF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v--~~EvG~K~~~~----~~~~~~~~a~ga~ 170 (184)
|.+.|. =| +.++.++ +.++++++.|..| .|--+.+.+.. ..|+....+.|.=
T Consensus 210 g~~~i~--H~-~~l~~~~--~~~~~l~~~gi~v~~~P~sn~~l~~~~~~~~~p~~~l~~~Gv~ 267 (325)
T cd01320 210 GAERIG--HG-IRAIEDP--ELVKRLAERNIPLEVCPTSNVQTGAVKSLAEHPLRELLDAGVK 267 (325)
T ss_pred CCcccc--hh-hccCccH--HHHHHHHHcCCeEEECCCccccccccCCcccChHHHHHHCCCE
Confidence 655321 11 1221111 4677777777766 66544443332 2344445444543
No 331
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=55.94 E-value=15 Score=33.72 Aligned_cols=92 Identities=18% Similarity=0.220 Sum_probs=55.3
Q ss_pred hhHHHHHHHhhcccccEEEeeCccccccCh-------hHHHHHHHHHHhCCceecC---ccHHHHHHHhCCchHHHHHHH
Q 030024 40 HNVLEDIFESMGQFVDGLKFSGGSHSLMPK-------PFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVED 109 (184)
Q Consensus 40 ~~~leDlLe~ag~yID~lKfg~GTs~l~p~-------~~L~eKI~l~~~~gV~v~~---GtlfE~al~qg~~~~~~yl~~ 109 (184)
....+.+|+.|..| +.|-=| ||...|+ +.+++.+++||++|..+.. ...|+..=..- +. ++.
T Consensus 13 ~~~~~~yi~~a~~~--Gf~~iF-TSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~lg~~~-~d----l~~ 84 (357)
T PF05913_consen 13 FEENKAYIEKAAKY--GFKRIF-TSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKKLGISY-DD----LSF 84 (357)
T ss_dssp HHHHHHHHHHHHCT--TEEEEE-EEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHTTT-BT-TB----THH
T ss_pred HHHHHHHHHHHHHC--CCCEEE-CCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCH-HH----HHH
Confidence 45778888888876 344444 5566665 3577888999999998876 24666554332 13 345
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeE
Q 030024 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (184)
.+++|++.+-+.+|+-. ..+.++ .++|+++
T Consensus 85 ~~~lGi~~lRlD~Gf~~------~~ia~l-s~ng~~I 114 (357)
T PF05913_consen 85 FKELGIDGLRLDYGFSG------EEIAKL-SKNGIKI 114 (357)
T ss_dssp HHHHT-SEEEESSS-SC------HHHHHH-TTT-SEE
T ss_pred HHHcCCCEEEECCCCCH------HHHHHH-HhCCCEE
Confidence 78899999999999975 233333 3338875
No 332
>PRK08444 hypothetical protein; Provisional
Probab=55.94 E-value=1.6e+02 Score=26.79 Aligned_cols=100 Identities=14% Similarity=0.151 Sum_probs=68.1
Q ss_pred eeCccccccChhHHHHHHHHHHhC--CceecCccHHHHHHHh--CCchHHHHHHHHHHcCCCEEEec-----C-------
Q 030024 59 FSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRN--GPSAFKEYVEDCKQVGFDTIELN-----V------- 122 (184)
Q Consensus 59 fg~GTs~l~p~~~L~eKI~l~~~~--gV~v~~GtlfE~al~q--g~~~~~~yl~~~k~lGF~~IEIS-----d------- 122 (184)
+-+|-..-.+-+.+.+.++..|+. +|.++.=|..|+.... -.-..++.++.+++.|.+.+--. +
T Consensus 102 iv~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I 181 (353)
T PRK08444 102 IVSAHNPNYGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKI 181 (353)
T ss_pred EeccCCCCCCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcccCCCCCchhcCHHHHhhh
Confidence 334444444556788888888875 4655543666765543 11368899999999999876431 1
Q ss_pred CcccCChhHHHHHHHHHHHCCCeEccccccccCCCCCC
Q 030024 123 GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIP 160 (184)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~Gf~v~~EvG~K~~~~~~~ 160 (184)
-.-..+.++|.++++.|++.|+++-+ |.-+|.-+.+
T Consensus 182 ~p~k~~~~~~~~i~~~a~~~Gi~~~s--g~l~G~gEt~ 217 (353)
T PRK08444 182 CKGKVSSERWLEIHKYWHKKGKMSNA--TMLFGHIENR 217 (353)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCccc--eeEEecCCCH
Confidence 13367789999999999999999966 6666664443
No 333
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=55.91 E-value=1.5e+02 Score=27.53 Aligned_cols=88 Identities=22% Similarity=0.234 Sum_probs=52.6
Q ss_pred ccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc--------
Q 030024 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-------- 125 (184)
Q Consensus 54 ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti-------- 125 (184)
+..+=|.-.++.. +.+.+++..+..++.|+....-+ ..+ .-++.++.+++.|+..|.+.--|.
T Consensus 246 ~~~i~f~Dd~f~~-~~~~~~~l~~~l~~~~i~~~~~~------~~~--~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~ 316 (472)
T TIGR03471 246 VREFFFDDDTFTD-DKPRAEEIARKLGPLGVTWSCNA------RAN--VDYETLKVMKENGLRLLLVGYESGDQQILKNI 316 (472)
T ss_pred CcEEEEeCCCCCC-CHHHHHHHHHHHhhcCceEEEEe------cCC--CCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHh
Confidence 3444555555443 33456666677777766432211 001 235677888888888877765554
Q ss_pred --cCChhHHHHHHHHHHHCCCeEcccc
Q 030024 126 --EIPEETLLRYVRLVKSAGLKAKPKF 150 (184)
Q Consensus 126 --~i~~~~r~~lI~~~~~~Gf~v~~Ev 150 (184)
..+.++-.+.|+.+++.|+.+..-+
T Consensus 317 ~K~~~~~~~~~~i~~~~~~Gi~v~~~~ 343 (472)
T TIGR03471 317 KKGLTVEIARRFTRDCHKLGIKVHGTF 343 (472)
T ss_pred cCCCCHHHHHHHHHHHHHCCCeEEEEE
Confidence 2455666778888888888776543
No 334
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=55.78 E-value=53 Score=27.42 Aligned_cols=114 Identities=18% Similarity=0.070 Sum_probs=68.5
Q ss_pred ceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecC--------------ccH
Q 030024 26 VTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--------------GDW 91 (184)
Q Consensus 26 lT~V~DkG~s~~~g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~--------------Gtl 91 (184)
+..+.+=|+ . ....++++++. -+|.+ ..|+..+.+++.+++..+.+++..|.++. =+|
T Consensus 72 ~pv~~~GGI--~-s~~d~~~~l~~---G~~~v--~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~ 143 (243)
T cd04731 72 IPLTVGGGI--R-SLEDARRLLRA---GADKV--SINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGG 143 (243)
T ss_pred CCEEEeCCC--C-CHHHHHHHHHc---CCceE--EECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCC
Confidence 344444443 2 34445555552 36654 55678888888888888877654454331 124
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc----ccCChhHHHHHHHHHHHC-CCeEcccccccc
Q 030024 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS----LEIPEETLLRYVRLVKSA-GLKAKPKFAVMF 154 (184)
Q Consensus 92 fE~al~qg~~~~~~yl~~~k~lGF~~IEISdGt----i~i~~~~r~~lI~~~~~~-Gf~v~~EvG~K~ 154 (184)
.+. ......++.+.+.+.|++.|.+++-+ ..-. ..++++++++. ...|+..=|+..
T Consensus 144 ~~~----~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~---~~~~i~~i~~~~~~pvia~GGi~~ 204 (243)
T cd04731 144 RKP----TGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGY---DLELIRAVSSAVNIPVIASGGAGK 204 (243)
T ss_pred cee----cCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCC---CHHHHHHHHhhCCCCEEEeCCCCC
Confidence 333 12356788899999999999996522 2222 24666666654 677777666654
No 335
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=55.68 E-value=25 Score=29.98 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCC
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAG 143 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G 143 (184)
...++++.+.++|++.||+. +-.+++.++ +.++.+.+.+
T Consensus 21 ~k~~i~~~L~~~Gv~~iE~g--~p~~~~~~~-e~~~~l~~~~ 59 (259)
T cd07939 21 EKLAIARALDEAGVDEIEVG--IPAMGEEER-EAIRAIVALG 59 (259)
T ss_pred HHHHHHHHHHHcCCCEEEEe--cCCCCHHHH-HHHHHHHhcC
Confidence 45667777788888888883 444555554 4555555543
No 336
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=55.63 E-value=1.4e+02 Score=28.73 Aligned_cols=118 Identities=16% Similarity=0.094 Sum_probs=76.2
Q ss_pred CCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhC-CceecCcc----HHHHH
Q 030024 21 PRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGD----WAEHL 95 (184)
Q Consensus 21 PR~~GlT~V~DkG~s~~~g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~v~~Gt----lfE~a 95 (184)
|+-+=+-+|-|-.- +-.-....+.+++.-+ |+|=+|+++..-- .+.++..|+.+++. +++++--| -+|.|
T Consensus 150 p~~~v~aEI~~a~~-l~~i~~~A~~~~~~GA---DIIDIG~~st~p~-~~~v~~~V~~l~~~~~~pISIDT~~~~v~eaA 224 (499)
T TIGR00284 150 PPLRVVAEIPPTVA-EDGIEGLAARMERDGA---DMVALGTGSFDDD-PDVVKEKVKTALDALDSPVIADTPTLDELYEA 224 (499)
T ss_pred CCeEEEEEEcCCcc-hHHHHHHHHHHHHCCC---CEEEECCCcCCCc-HHHHHHHHHHHHhhCCCcEEEeCCCHHHHHHH
Confidence 34445555655441 0101222333444444 4555788876332 23599999999987 89998765 78888
Q ss_pred HHhCC--------chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCC
Q 030024 96 IRNGP--------SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 144 (184)
Q Consensus 96 l~qg~--------~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf 144 (184)
+..|. .++++.+..|++.|...|=+-... +-.-+...+.|+++.+.|+
T Consensus 225 L~aGAdiINsVs~~~~d~~~~l~a~~g~~vVlm~~~~-~~~~~~l~~~ie~a~~~Gi 280 (499)
T TIGR00284 225 LKAGASGVIMPDVENAVELASEKKLPEDAFVVVPGNQ-PTNYEELAKAVKKLRTSGY 280 (499)
T ss_pred HHcCCCEEEECCccchhHHHHHHHHcCCeEEEEcCCC-CchHHHHHHHHHHHHHCCC
Confidence 86643 357888888999999998887421 1111566788999999999
No 337
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=55.42 E-value=95 Score=27.96 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=15.4
Q ss_pred HHHHH---HHHHHcCCCEEEecCC
Q 030024 103 FKEYV---EDCKQVGFDTIELNVG 123 (184)
Q Consensus 103 ~~~yl---~~~k~lGF~~IEISdG 123 (184)
+++|. +.|++.|||.|||.-|
T Consensus 141 i~~f~~aA~~a~~aGfDgVeih~a 164 (337)
T PRK13523 141 VLAFKQAAVRAKEAGFDVIEIHGA 164 (337)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccc
Confidence 44444 4566779999999877
No 338
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=55.09 E-value=58 Score=28.72 Aligned_cols=72 Identities=21% Similarity=0.368 Sum_probs=55.7
Q ss_pred HHHHHHHHHhCCceecC--ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccc
Q 030024 72 IEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPK 149 (184)
Q Consensus 72 L~eKI~l~~~~gV~v~~--GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E 149 (184)
+-+.+..++..||.+.- =|+.--.+..| .+.|++.+|+.|-+..=| .++|+++-..+-+.++++|+...|-
T Consensus 82 i~emvk~ar~~gvt~PIiLmgYYNPIl~yG---~e~~iq~ak~aGanGfii----vDlPpEEa~~~Rne~~k~gislvpL 154 (268)
T KOG4175|consen 82 IIEMVKEARPQGVTCPIILMGYYNPILRYG---VENYIQVAKNAGANGFII----VDLPPEEAETLRNEARKHGISLVPL 154 (268)
T ss_pred HHHHHHHhcccCcccceeeeecccHHHhhh---HHHHHHHHHhcCCCceEe----ccCChHHHHHHHHHHHhcCceEEEe
Confidence 55667777778874433 36777777886 889999999999754333 3799999999999999999988875
Q ss_pred c
Q 030024 150 F 150 (184)
Q Consensus 150 v 150 (184)
+
T Consensus 155 v 155 (268)
T KOG4175|consen 155 V 155 (268)
T ss_pred e
Confidence 5
No 339
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=55.04 E-value=73 Score=28.40 Aligned_cols=50 Identities=6% Similarity=0.132 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHH----HHHHHHHHHCCCeEccccccccCC
Q 030024 105 EYVEDCKQVGFDTIELNVGSLEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNK 156 (184)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r----~~lI~~~~~~Gf~v~~EvG~K~~~ 156 (184)
+.+..|-++||+.|=++--. +|.++= +++++.|...|.-|-.|+|.=-+.
T Consensus 88 e~i~~Ai~~GftSVM~DgS~--l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~ 141 (284)
T PRK09195 88 DDIAQKVRSGVRSVMIDGSH--LPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQ 141 (284)
T ss_pred HHHHHHHHcCCCEEEeCCCC--CCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCc
Confidence 55677889999999997555 444443 367788888999999999976433
No 340
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=54.94 E-value=26 Score=32.53 Aligned_cols=95 Identities=23% Similarity=0.322 Sum_probs=63.6
Q ss_pred Hhhcc--cccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCc
Q 030024 48 ESMGQ--FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGS 124 (184)
Q Consensus 48 e~ag~--yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~-~~~yl~~~k~lGF~~IEISdGt 124 (184)
...+. .|+-|=||+||-.+++++.|++.++..+++=- ....-.|+.+--+|.. =.+.++.+++.||+. ||=|-
T Consensus 80 ~~~~~~~~v~ti~~GGGTPslL~~~~l~~ll~~l~~~~~--~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNR--iSlGV 155 (416)
T COG0635 80 ALLGGQREVKTIYFGGGTPSLLSPEQLERLLKALRELFN--DLDPDAEITIEANPGTVEAEKFKALKEAGVNR--ISLGV 155 (416)
T ss_pred hhcCCCCeEEEEEECCCccccCCHHHHHHHHHHHHHhcc--cCCCCceEEEEeCCCCCCHHHHHHHHHcCCCE--EEecc
Confidence 34444 48889999999989999999999999986641 0011234444334443 346777799999994 56666
Q ss_pred ccCChhH------------HHHHHHHHHHCCCeE
Q 030024 125 LEIPEET------------LLRYVRLVKSAGLKA 146 (184)
Q Consensus 125 i~i~~~~------------r~~lI~~~~~~Gf~v 146 (184)
-+++.+. -.+.++.+++.||.-
T Consensus 156 Qsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~ 189 (416)
T COG0635 156 QSFNDEVLKALGRIHDEEEAKEAVELARKAGFTS 189 (416)
T ss_pred ccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCc
Confidence 6665544 445677777777764
No 341
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=54.93 E-value=17 Score=29.87 Aligned_cols=48 Identities=27% Similarity=0.452 Sum_probs=34.4
Q ss_pred chhHHHHHHHhhcccc----cEEEeeCccccccChhHHHHHHHHHHhCCceec
Q 030024 39 SHNVLEDIFESMGQFV----DGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS 87 (184)
Q Consensus 39 g~~~leDlLe~ag~yI----D~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~ 87 (184)
.+..+.+.++...+++ +.|-|.+|--.+.+ +.+.+.++.++++|+.+.
T Consensus 47 s~e~i~~~i~~~~~~~~~~~~~I~~~GGEPll~~-~~~~~li~~~~~~g~~~~ 98 (235)
T TIGR02493 47 TPEELIKEVGSYKDFFKASGGGVTFSGGEPLLQP-EFLSELFKACKELGIHTC 98 (235)
T ss_pred CHHHHHHHHHHhHHHHhcCCCeEEEeCcccccCH-HHHHHHHHHHHHCCCCEE
Confidence 4446666666655554 47899988877765 568899999999998543
No 342
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=54.64 E-value=27 Score=38.38 Aligned_cols=51 Identities=14% Similarity=0.086 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC--------------------ChhHHHHHHHHHHHCCCeEcccccc
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGSLEI--------------------PEETLLRYVRLVKSAGLKAKPKFAV 152 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i--------------------~~~~r~~lI~~~~~~Gf~v~~EvG~ 152 (184)
.+.+-+.++++|||++|.+|--+-.- +.++..++|+.++++|++|+-.+=.
T Consensus 759 ~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 759 DAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred HHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 46677889999999999998655421 4568899999999999999665443
No 343
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=54.64 E-value=39 Score=29.81 Aligned_cols=70 Identities=20% Similarity=0.120 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHH-HCCCeEccccccccCCCCCCchhhhhccccccCCCCCCC
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVK-SAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 179 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~-~~Gf~v~~EvG~K~~~~~~~~~~~~a~ga~~~~~~~~~~ 179 (184)
..++=++.|.+.|=|+|.|. ||+.+..+...++|++++ +.++.++=|.|.-.+-++ .+-||..||--||.
T Consensus 29 ~~~ei~~~~~~~GTDaImIG-GS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~is~-------~aDavff~svLNS~ 99 (240)
T COG1646 29 EADEIAEAAAEAGTDAIMIG-GSDGVTEENVDNVVEAIKERTDLPVILFPGSPSGISP-------YADAVFFPSVLNSD 99 (240)
T ss_pred ccHHHHHHHHHcCCCEEEEC-CcccccHHHHHHHHHHHHhhcCCCEEEecCChhccCc-------cCCeEEEEEEecCC
Confidence 46777889999999999996 999999999999999999 778888877776544432 45567777665543
No 344
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=54.63 E-value=74 Score=28.31 Aligned_cols=52 Identities=4% Similarity=0.105 Sum_probs=38.2
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHCCCeEccccccccCC
Q 030024 105 EYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNK 156 (184)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~Gf~v~~EvG~K~~~ 156 (184)
+.+..|-+.||+.|=+..-.+++.+-- =.++++.|...|.-|-.|+|.=-+.
T Consensus 86 e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~ 139 (282)
T TIGR01858 86 DDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGV 139 (282)
T ss_pred HHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCc
Confidence 557778899999999975554443322 2367888888999999999976443
No 345
>PRK06151 N-ethylammeline chlorohydrolase; Provisional
Probab=54.46 E-value=86 Score=29.20 Aligned_cols=113 Identities=12% Similarity=0.031 Sum_probs=58.3
Q ss_pred cEEEeeCcccc--ccChhHHHHHHHHHHhCCceecC---ccHHHHHHHhCCchH-HHHHHHHHHcCCC--EEEecCCcc-
Q 030024 55 DGLKFSGGSHS--LMPKPFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAF-KEYVEDCKQVGFD--TIELNVGSL- 125 (184)
Q Consensus 55 D~lKfg~GTs~--l~p~~~L~eKI~l~~~~gV~v~~---GtlfE~al~qg~~~~-~~yl~~~k~lGF~--~IEISdGti- 125 (184)
|.+|.+.+... .++.+.|++.+++++++|+.+.. .+-.|+-.... .+ ...++...++|+- .+-++-++.
T Consensus 204 ~~i~~~~~p~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~--~~g~~~~~~~~~~g~l~~r~~l~H~~~l 281 (488)
T PRK06151 204 GLVRGMLAPDRIETCTVDLLRRTAAAARELGCPVRLHCAQGVLEVETVRR--LHGTTPLEWLADVGLLGPRLLIPHATYI 281 (488)
T ss_pred CceEEEEcCCCCCCCCHHHHHHHHHHHHHCCCcEEEEECCchHHHHHHHH--HcCCCHHHHHHHcCCCCCCcEEEEEEEc
Confidence 77887765443 35678899999999999997764 34444322111 10 1124445566652 111111111
Q ss_pred -cCChhHHH--HHHHHHHHCCCeEc--cccccccCCCCCCchhhhhccc
Q 030024 126 -EIPEETLL--RYVRLVKSAGLKAK--PKFAVMFNKSDIPSDRDRAFGA 169 (184)
Q Consensus 126 -~i~~~~r~--~lI~~~~~~Gf~v~--~EvG~K~~~~~~~~~~~~a~ga 169 (184)
+++.+... +.++++++.|..|. |....+.+..-.++..+.+.|.
T Consensus 282 ~~~~~~~~~~~~~~~~la~~g~~v~~~P~~~~~~g~~~~p~~~l~~~Gv 330 (488)
T PRK06151 282 SGSPRLNYSGGDDLALLAEHGVSIVHCPLVSARHGSALNSFDRYREAGI 330 (488)
T ss_pred CCccccccCCHHHHHHHHhcCCEEEECchhhhhhccccccHHHHHHCCC
Confidence 11212111 45667777888775 5444443333344444444443
No 346
>PRK05481 lipoyl synthase; Provisional
Probab=54.41 E-value=43 Score=29.42 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=9.1
Q ss_pred CChhHHHHHHHHHHHCCCe
Q 030024 127 IPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 127 i~~~~r~~lI~~~~~~Gf~ 145 (184)
=+.+++.+.++.+++.+|.
T Consensus 208 ET~ed~~~tl~~lrel~~d 226 (289)
T PRK05481 208 ETDEEVLEVMDDLRAAGVD 226 (289)
T ss_pred CCHHHHHHHHHHHHhcCCC
Confidence 3444444555555544443
No 347
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=54.33 E-value=29 Score=30.02 Aligned_cols=45 Identities=22% Similarity=0.298 Sum_probs=37.8
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccc
Q 030024 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (184)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG~K 153 (184)
++++...|-|+|=+.... ++.++..++++.+++.|+.+..|+--.
T Consensus 126 i~~a~~~GAD~VlLi~~~--l~~~~l~~li~~a~~lGl~~lvevh~~ 170 (260)
T PRK00278 126 IYEARAAGADAILLIVAA--LDDEQLKELLDYAHSLGLDVLVEVHDE 170 (260)
T ss_pred HHHHHHcCCCEEEEEecc--CCHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 677899999999998777 467888899999999999988887544
No 348
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=54.33 E-value=1.3e+02 Score=25.44 Aligned_cols=101 Identities=22% Similarity=0.386 Sum_probs=67.6
Q ss_pred HHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhC-CceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 030024 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (184)
Q Consensus 43 leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEIS 121 (184)
+.+.++..|. +-.+=|++|--.+-+. +.+.++.+++. ++.++..|.- .. .-+++++..+++|++.|-||
T Consensus 56 ~~~~~~~~g~-~~~v~~~gGEPll~~d--~~ei~~~~~~~~~~~~~~~TnG-~~------~~~~~~~~l~~~g~~~v~iS 125 (347)
T COG0535 56 VIDELAELGE-IPVVIFTGGEPLLRPD--LLEIVEYARKKGGIRVSLSTNG-TL------LTEEVLEKLKEAGLDYVSIS 125 (347)
T ss_pred HHHHHHHcCC-eeEEEEeCCCcccccc--HHHHHHHHhhcCCeEEEEeCCC-cc------CCHHHHHHHHhcCCcEEEEE
Confidence 3456666776 7888888888777744 99999999955 7766654322 00 12455666889999999998
Q ss_pred CCcccCCh-----------hHHHHHHHHHHHCCCe--Eccccccc
Q 030024 122 VGSLEIPE-----------ETLLRYVRLVKSAGLK--AKPKFAVM 153 (184)
Q Consensus 122 dGti~i~~-----------~~r~~lI~~~~~~Gf~--v~~EvG~K 153 (184)
-.+.+-.. +...+.|+.+++.|+. +...+...
T Consensus 126 id~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~~~~~~~v~~~ 170 (347)
T COG0535 126 LDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGILVVINTTVTKI 170 (347)
T ss_pred ecCCChhhhhhhcCCCcHHHHHHHHHHHHHHcCCeeeEEEEEecC
Confidence 77654322 3556778888888873 44444443
No 349
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=54.28 E-value=23 Score=35.39 Aligned_cols=63 Identities=17% Similarity=0.337 Sum_probs=46.6
Q ss_pred eecCcc-HHHHHHHhCCchHHHHHHHHHHcCCCEEEe----------cCCcccCChhHHHHHHHHHHHCCCeEccccc
Q 030024 85 YVSTGD-WAEHLIRNGPSAFKEYVEDCKQVGFDTIEL----------NVGSLEIPEETLLRYVRLVKSAGLKAKPKFA 151 (184)
Q Consensus 85 ~v~~Gt-lfE~al~qg~~~~~~yl~~~k~lGF~~IEI----------SdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG 151 (184)
..+.|. -.|..-. . .+++=++..|.+||++|++ ..|..+.+.-+.. +|++|.+.||.|+-=-|
T Consensus 16 ~l~gG~y~p~~~p~-~--~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~~~D~~-~l~~a~~~Gl~vil~t~ 89 (673)
T COG1874 16 LLYGGDYYPERWPR-E--TWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFTWLDEI-FLERAYKAGLYVILRTG 89 (673)
T ss_pred EEeccccChHHCCH-H--HHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcccchHH-HHHHHHhcCceEEEecC
Confidence 344443 4444433 2 6777888999999999999 6788888866665 79999999999975433
No 350
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=54.27 E-value=80 Score=30.25 Aligned_cols=111 Identities=9% Similarity=0.072 Sum_probs=78.1
Q ss_pred CCceeEecCCCCCCcch-----hHHHHHHHhh-cccccEEEeeCccccccChhHHHHHHHHHHhCCceecC--c-cHHHH
Q 030024 24 FGVTEMRSPHYTLSSSH-----NVLEDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--G-DWAEH 94 (184)
Q Consensus 24 ~GlT~V~DkG~s~~~g~-----~~leDlLe~a-g~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~--G-tlfE~ 94 (184)
+-+.|++= |..+. |. .-.+-+++.| .+-||++-+.- .+-.-+.++.-|+.++++|..+.. + |.--
T Consensus 85 t~lqmLlR-G~n~v-gy~~ypddvv~~fv~~a~~~Gidi~Rifd---~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp- 158 (468)
T PRK12581 85 TRLQMLLR-GQNLL-GYRHYADDIVDKFISLSAQNGIDVFRIFD---ALNDPRNIQQALRAVKKTGKEAQLCIAYTTSP- 158 (468)
T ss_pred Cceeeeec-ccccc-CccCCcchHHHHHHHHHHHCCCCEEEEcc---cCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCC-
Confidence 45555554 53333 22 2344456665 56699988875 566778899999999999987542 2 2200
Q ss_pred HHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 030024 95 LIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 95 al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (184)
....+.+.++.+.+.++|.+.|=|.|-.--+.+++-.++|+.+++.
T Consensus 159 --~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~ 204 (468)
T PRK12581 159 --VHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAM 204 (468)
T ss_pred --cCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhc
Confidence 1111236667778889999999999999999999999999999874
No 351
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=54.23 E-value=31 Score=28.47 Aligned_cols=48 Identities=25% Similarity=0.295 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCCh-hHHHHHHHHHHH-CCCeEccccc
Q 030024 104 KEYVEDCKQVGFDTIELNVGSLEIPE-ETLLRYVRLVKS-AGLKAKPKFA 151 (184)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~-~~r~~lI~~~~~-~Gf~v~~EvG 151 (184)
.++++.|++.|-|.|-+......-|. ++..++++.+++ .|+.+.+++.
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~ 127 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADCS 127 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCC
Confidence 45678899999998887654433232 566688888888 7888887654
No 352
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=53.93 E-value=53 Score=28.07 Aligned_cols=92 Identities=12% Similarity=0.195 Sum_probs=57.6
Q ss_pred HHHHhhcccccEEEeeCcccccc-ChhHHHHHHHHHHhCCceecC---c-cHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 030024 45 DIFESMGQFVDGLKFSGGSHSLM-PKPFIEEVVKRAHQHDVYVST---G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (184)
Q Consensus 45 DlLe~ag~yID~lKfg~GTs~l~-p~~~L~eKI~l~~~~gV~v~~---G-tlfE~al~qg~~~~~~yl~~~k~lGF~~IE 119 (184)
++++..+---.-|-|=.-=+.++ ..+.+++.++.+|+.||.+.. | |+-= +++.+++-||.|-
T Consensus 110 ~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~l~~L~~~G~~ialDDFGtG~ss-------------l~~L~~l~~d~iK 176 (256)
T COG2200 110 RLLARLGLPPHRLVLEITESALIDDLDTALALLRQLRELGVRIALDDFGTGYSS-------------LSYLKRLPPDILK 176 (256)
T ss_pred HHHHHhCCCcceEEEEEeCchhhcCHHHHHHHHHHHHHCCCeEEEECCCCCHHH-------------HHHHhhCCCCeEE
Confidence 34444332233444544444432 333577788888888887775 5 3322 2335568889999
Q ss_pred ecCCccc-CCh-----hHHHHHHHHHHHCCCeEccc
Q 030024 120 LNVGSLE-IPE-----ETLLRYVRLVKSAGLKAKPK 149 (184)
Q Consensus 120 ISdGti~-i~~-----~~r~~lI~~~~~~Gf~v~~E 149 (184)
|+-.++. |.. .--..+|..+++.|++|..|
T Consensus 177 ID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaE 212 (256)
T COG2200 177 IDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAE 212 (256)
T ss_pred ECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEe
Confidence 9888773 322 24457889999999999987
No 353
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=53.42 E-value=1.2e+02 Score=24.88 Aligned_cols=46 Identities=22% Similarity=0.265 Sum_probs=33.6
Q ss_pred HHHHHHHHcCCCEEEecCCcccCCh-hHHHHHHHHHHHCC-CeEcccc
Q 030024 105 EYVEDCKQVGFDTIELNVGSLEIPE-ETLLRYVRLVKSAG-LKAKPKF 150 (184)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~-~~r~~lI~~~~~~G-f~v~~Ev 150 (184)
+.++.|.+.|-+.|.+.......|. ++-.++++.+++.| +.+.+++
T Consensus 83 ~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v 130 (219)
T cd04729 83 EEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMADI 130 (219)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEEC
Confidence 3678899999998888655444454 35668898999888 7766643
No 354
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=53.27 E-value=1.5e+02 Score=25.52 Aligned_cols=80 Identities=24% Similarity=0.372 Sum_probs=51.6
Q ss_pred hhcccccEEEeeC-c-----cc----cccChhHHHHHHHHHHhCCceecC--ccHHHHHHHhCCchHHHHHHHHHHcCCC
Q 030024 49 SMGQFVDGLKFSG-G-----SH----SLMPKPFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (184)
Q Consensus 49 ~ag~yID~lKfg~-G-----Ts----~l~p~~~L~eKI~l~~~~gV~v~~--GtlfE~al~qg~~~~~~yl~~~k~lGF~ 116 (184)
....-.|++|+-. | +. ..++.+.+++-++.+|++|+++.. .+- .-++.+-+.|++
T Consensus 129 ~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~-------------~~i~~~l~~G~~ 195 (342)
T cd01299 129 QLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAYGA-------------EAIRRAIRAGVD 195 (342)
T ss_pred HHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeCCH-------------HHHHHHHHcCCC
Confidence 3445789999753 1 01 246778899999999999998875 221 112234456888
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHCCCeEcc
Q 030024 117 TIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (184)
.||=... +++ +.++++++.|..+.|
T Consensus 196 ~i~H~~~---~~~----~~~~~l~~~g~~~~~ 220 (342)
T cd01299 196 TIEHGFL---IDD----ETIELMKEKGIFLVP 220 (342)
T ss_pred EEeecCC---CCH----HHHHHHHHCCcEEeC
Confidence 8775432 333 457777888887654
No 355
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=53.17 E-value=70 Score=28.57 Aligned_cols=108 Identities=13% Similarity=0.182 Sum_probs=67.7
Q ss_pred HHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceec----CccH----HHHHHH----------------
Q 030024 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGDW----AEHLIR---------------- 97 (184)
Q Consensus 42 ~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~----~Gtl----fE~al~---------------- 97 (184)
.++++|..|-.- +++-|.+.+++-+.++.-|+-|.+.+-++. +|+. ++.+..
T Consensus 5 ~~k~ll~~A~~~----~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lH 80 (283)
T PRK07998 5 NGRILLDRIQEK----HVLAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLH 80 (283)
T ss_pred cHHHHHHHHHHC----CCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 455666554332 356667777777777777777777774332 1110 111111
Q ss_pred --hCCchHHHHHHHHHHcCCCEEEecCCcccCChhH----HHHHHHHHHHCCCeEccccccccCCC
Q 030024 98 --NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEET----LLRYVRLVKSAGLKAKPKFAVMFNKS 157 (184)
Q Consensus 98 --qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~----r~~lI~~~~~~Gf~v~~EvG~K~~~~ 157 (184)
++ .--+.+..|-++||+.|=+ |||- +|.++ =.++++.|...|.-|-.|+|.=-+..
T Consensus 81 LDH~--~~~e~i~~Ai~~GftSVM~-DgS~-l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~e 142 (283)
T PRK07998 81 LDHG--KTFEDVKQAVRAGFTSVMI-DGAA-LPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKE 142 (283)
T ss_pred CcCC--CCHHHHHHHHHcCCCEEEE-eCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCcc
Confidence 22 2235677788999999999 5654 55543 34778888899999999998765443
No 356
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=52.86 E-value=26 Score=37.09 Aligned_cols=51 Identities=22% Similarity=0.246 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCCEEEecCCc-------------------ccC------------ChhHHHHHHHHHHHCCCeEccccccc
Q 030024 105 EYVEDCKQVGFDTIELNVGS-------------------LEI------------PEETLLRYVRLVKSAGLKAKPKFAVM 153 (184)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGt-------------------i~i------------~~~~r~~lI~~~~~~Gf~v~~EvG~K 153 (184)
+-++++|+||+++||++==+ -.+ +.++..++|+.+.++|++|+-.+=..
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~N 270 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVFN 270 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEccc
Confidence 45678999999999985221 111 56788999999999999997665444
Q ss_pred cC
Q 030024 154 FN 155 (184)
Q Consensus 154 ~~ 155 (184)
+.
T Consensus 271 Ht 272 (1221)
T PRK14510 271 HT 272 (1221)
T ss_pred cc
Confidence 43
No 357
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=52.65 E-value=83 Score=28.53 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHHHCCCeE
Q 030024 103 FKEYVEDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti---~i~~~~r~~lI~~~~~~Gf~v 146 (184)
+.+.++++.+.|...+-++-... ..+.++..++.+.+++.|..+
T Consensus 169 ~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v 215 (415)
T cd01297 169 MRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVY 215 (415)
T ss_pred HHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 34444444556655543332112 366777777777777777665
No 358
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=52.58 E-value=48 Score=29.65 Aligned_cols=71 Identities=15% Similarity=0.236 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhC--CceecCc---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc----------CChhHHHHH
Q 030024 71 FIEEVVKRAHQH--DVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE----------IPEETLLRY 135 (184)
Q Consensus 71 ~L~eKI~l~~~~--gV~v~~G---tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~----------i~~~~r~~l 135 (184)
.-.+.++.+++. |+.+.+| |+-|.- +.+.+-++.++++||+.+=|.-=.-. +++++...+
T Consensus 192 ~~Le~l~~ak~~~pgi~~~TgiIVGlGETe-----ee~~etl~~Lrelg~d~v~igqYl~p~~~~~~v~~~~~p~~f~~~ 266 (302)
T TIGR00510 192 WSLKLLERAKEYLPNLPTKSGIMVGLGETN-----EEIKQTLKDLRDHGVTMVTLGQYLRPSRRHLPVKRYVSPEEFDYY 266 (302)
T ss_pred HHHHHHHHHHHhCCCCeecceEEEECCCCH-----HHHHHHHHHHHhcCCCEEEeecccCCCCCCCccccCCCHHHHHHH
Confidence 345788899998 8988887 676643 26778889999999999998766554 678888888
Q ss_pred HHHHHHCCCeE
Q 030024 136 VRLVKSAGLKA 146 (184)
Q Consensus 136 I~~~~~~Gf~v 146 (184)
=+.+.+.||+.
T Consensus 267 ~~~a~~~gf~~ 277 (302)
T TIGR00510 267 RSVALEMGFLH 277 (302)
T ss_pred HHHHHHcCChh
Confidence 88899999973
No 359
>PRK13561 putative diguanylate cyclase; Provisional
Probab=52.43 E-value=29 Score=32.97 Aligned_cols=48 Identities=13% Similarity=0.248 Sum_probs=30.4
Q ss_pred HHHHHHcCCCEEEecCCccc-C--ChhHHHHHHHHHHHCCCeEccccccccC
Q 030024 107 VEDCKQVGFDTIELNVGSLE-I--PEETLLRYVRLVKSAGLKAKPKFAVMFN 155 (184)
Q Consensus 107 l~~~k~lGF~~IEISdGti~-i--~~~~r~~lI~~~~~~Gf~v~~EvG~K~~ 155 (184)
+...+.+.+|.|-|+-.++. + +..--..+++.+++.|++|+.| |+.+.
T Consensus 565 L~~l~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~viAe-gVE~~ 615 (651)
T PRK13561 565 LQHMKSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVIAE-GVETE 615 (651)
T ss_pred HhhcCCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEe-cCCCH
Confidence 33345566777777654432 2 2233456788999999999988 55543
No 360
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=52.34 E-value=92 Score=28.37 Aligned_cols=117 Identities=14% Similarity=0.074 Sum_probs=74.7
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-----
Q 030024 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN----- 98 (184)
Q Consensus 27 T~V~DkG~s~~~g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q----- 98 (184)
|.-++=|-+..-.+..++.+++..-.+++...-.-=|.-..|..+-.++++.++++|| .++.| ++-+..+..
T Consensus 76 siy~GGGTPs~L~~~~L~~ll~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~R~~ 155 (394)
T PRK08898 76 TVFIGGGTPSLLSAAGLDRLLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALGRIH 155 (394)
T ss_pred EEEECCCCcCCCCHHHHHHHHHHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhCCCC
Confidence 5556555544337789999999998888665322334456677778899999999999 68888 677777752
Q ss_pred CCchHHHHHHHHHHcCCCEEEe--cCCcccCChhHHHHHHHHHHHCCC
Q 030024 99 GPSAFKEYVEDCKQVGFDTIEL--NVGSLEIPEETLLRYVRLVKSAGL 144 (184)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEI--SdGti~i~~~~r~~lI~~~~~~Gf 144 (184)
..+.+.+-++.+++. |..|-+ --|.=-=+.+++.+-++.+.+.+.
T Consensus 156 ~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~~~~~~~l~~~~~l~p 202 (394)
T PRK08898 156 DGAEARAAIEIAAKH-FDNFNLDLMYALPGQTLDEALADVETALAFGP 202 (394)
T ss_pred CHHHHHHHHHHHHHh-CCceEEEEEcCCCCCCHHHHHHHHHHHHhcCC
Confidence 112344455555665 543322 222222355566666777777665
No 361
>PRK06801 hypothetical protein; Provisional
Probab=52.29 E-value=82 Score=28.02 Aligned_cols=47 Identities=19% Similarity=0.357 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHH----HHHHHHHHCCCeEcccccc
Q 030024 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLL----RYVRLVKSAGLKAKPKFAV 152 (184)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~----~lI~~~~~~Gf~v~~EvG~ 152 (184)
-+.++.|-+.||+.|=+ ||+- +|.++-. ++.+.++..|.-|--|+|.
T Consensus 87 ~e~i~~Ai~~GftSVm~-D~S~-l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~ 137 (286)
T PRK06801 87 FEAVVRALRLGFSSVMF-DGST-LEYEENVRQTREVVKMCHAVGVSVEAELGA 137 (286)
T ss_pred HHHHHHHHHhCCcEEEE-cCCC-CCHHHHHHHHHHHHHHHHHcCCeEEeecCc
Confidence 46677788899999999 4443 4544443 4667778899999888887
No 362
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=52.24 E-value=29 Score=32.64 Aligned_cols=84 Identities=13% Similarity=0.146 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhCCceec-CccHHHHHHHhCCch-----HHHHHHHHHHcCCCEEEec---------CCcccCChhHHHHH
Q 030024 71 FIEEVVKRAHQHDVYVS-TGDWAEHLIRNGPSA-----FKEYVEDCKQVGFDTIELN---------VGSLEIPEETLLRY 135 (184)
Q Consensus 71 ~L~eKI~l~~~~gV~v~-~GtlfE~al~qg~~~-----~~~yl~~~k~lGF~~IEIS---------dGti~i~~~~r~~l 135 (184)
.|+.-+..+++.||.-. .-=|-=++-..+|++ .+++++.+++.|++.+=|- ..+..||...| +
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W--v 94 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW--V 94 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH--H
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH--H
Confidence 35666666666666322 222222222333322 4566666666666666554 22444555555 3
Q ss_pred HHHHHHCCCeEccccccccCC
Q 030024 136 VRLVKSAGLKAKPKFAVMFNK 156 (184)
Q Consensus 136 I~~~~~~Gf~v~~EvG~K~~~ 156 (184)
.+..++..+.-.-+-|..+.+
T Consensus 95 ~~~~~~~di~ytd~~G~rn~E 115 (402)
T PF01373_consen 95 WEIGKKDDIFYTDRSGNRNKE 115 (402)
T ss_dssp HHHHHHSGGEEE-TTS-EEEE
T ss_pred HhccccCCcEEECCCCCcCcc
Confidence 333344455555555655544
No 363
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=52.19 E-value=17 Score=31.60 Aligned_cols=65 Identities=14% Similarity=0.007 Sum_probs=43.9
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhc-c--cccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHh
Q 030024 24 FGVTEMRSPHYTLSSSHNVLEDIFESMG-Q--FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRN 98 (184)
Q Consensus 24 ~GlT~V~DkG~s~~~g~~~leDlLe~ag-~--yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~q 98 (184)
.++....|=. +. ++..++.+++..+ + -+|.-|+|+ +. ..++-.++|++|||.+++|+++|.-+..
T Consensus 227 ~~ipIa~~E~--~~-~~~~~~~~~~~~~~d~v~~~~~~~GG----i~---~~~~~~~~a~~~gi~~~~~~~~~~~i~~ 294 (316)
T cd03319 227 SPLPIMADES--CF-SAADAARLAGGGAYDGINIKLMKTGG----LT---EALRIADLARAAGLKVMVGCMVESSLSI 294 (316)
T ss_pred CCCCEEEeCC--CC-CHHHHHHHHhcCCCCEEEEeccccCC----HH---HHHHHHHHHHHcCCCEEEECchhhHHHH
Confidence 3455555543 34 7778888888543 2 234555554 32 2688899999999999999877876655
No 364
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=52.15 E-value=27 Score=31.71 Aligned_cols=41 Identities=22% Similarity=0.317 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCe
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (184)
.-.++.+.+.++|++.||+ |+-..+++++ +.|+.+.+.+..
T Consensus 23 ~k~~ia~~L~~~Gv~~IEv--G~p~~~~~~~-e~i~~i~~~~~~ 63 (363)
T TIGR02090 23 QKVEIARKLDELGVDVIEA--GFPIASEGEF-EAIKKISQEGLN 63 (363)
T ss_pred HHHHHHHHHHHcCCCEEEE--eCCCCChHHH-HHHHHHHhcCCC
Confidence 3456666777888888887 5666666665 666666666553
No 365
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=52.14 E-value=13 Score=31.96 Aligned_cols=107 Identities=15% Similarity=0.197 Sum_probs=49.1
Q ss_pred CCCceeEecCCCCCCcchhHHHHHHHhh---cccccEEEeeCccccccChhHHHHHHHHHHhCCceecC----cc--HH-
Q 030024 23 RFGVTEMRSPHYTLSSSHNVLEDIFESM---GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST----GD--WA- 92 (184)
Q Consensus 23 ~~GlT~V~DkG~s~~~g~~~leDlLe~a---g~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~----Gt--lf- 92 (184)
..|...+.|++- |++.. |+.+ ..+-..+ +=-+=-.+...+.|+..++.+.+++|-+.| || ++
T Consensus 62 ~~g~~vl~d~~~----gLN~A---l~~a~~~~~~~~vl-vl~aDLPll~~~dl~~~l~~~~~~~vviap~r~gGTN~L~~ 133 (217)
T PF01983_consen 62 RLGAEVLPDPGR----GLNAA---LNAALAAAGDDPVL-VLPADLPLLTPEDLDALLAAAGRADVVIAPDRGGGTNALLL 133 (217)
T ss_dssp --SSEEEE---S-----HHHH---HHHHHH-H--S-EE-EE-S--TT--HHHHHHHCT-SS--SEEEEE-GGG-EEEEEE
T ss_pred ccCCeEecCCCC----CHHHH---HHHHHhccCCCceE-EeecCCccCCHHHHHHHHhccCCCCEEEeCCCCCCeEEEEe
Confidence 669999999954 54433 3333 2221111 112222334455688999998888898887 23 22
Q ss_pred ---HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHH
Q 030024 93 ---EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVR 137 (184)
Q Consensus 93 ---E~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~ 137 (184)
..-..-|++++...++.+++.|.++..+..-.+.++-++-..|.+
T Consensus 134 ~~~~~~~~fg~~S~~~H~~~A~~~gl~~~v~~s~~l~~DVDtp~DL~e 181 (217)
T PF01983_consen 134 RPDAFPFRFGGGSFARHLRAARERGLSVAVVDSFRLALDVDTPEDLAE 181 (217)
T ss_dssp SCCC-----SSSHHHHHHHHHHCTT--EEE---TTTT----SCCHHHH
T ss_pred cCCCCCCCcChhHHHHHHHHHHHCCCeEEEEccCceeecCCCHHHHHH
Confidence 233344566999999999999999998877666555544444443
No 366
>PRK06038 N-ethylammeline chlorohydrolase; Provisional
Probab=52.12 E-value=45 Score=30.40 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=24.5
Q ss_pred cEEEeeCccc--cccChhHHHHHHHHHHhCCceecC
Q 030024 55 DGLKFSGGSH--SLMPKPFIEEVVKRAHQHDVYVST 88 (184)
Q Consensus 55 D~lKfg~GTs--~l~p~~~L~eKI~l~~~~gV~v~~ 88 (184)
+.++.+.+-+ ...+.+.|++.+++++++|+++..
T Consensus 173 g~v~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~ 208 (430)
T PRK06038 173 GRIKVMYGPHAPYTCSEEFLSKVKKLANKDGVGIHI 208 (430)
T ss_pred CceEEEEeCCcCccCCHHHHHHHHHHHHHcCCcEEE
Confidence 3455554433 345677899999999999998875
No 367
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=52.08 E-value=25 Score=30.13 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (184)
...++++.+.++||+.||+ |+...+++++ +.++.+.+.
T Consensus 21 ~k~~i~~~L~~~Gv~~iEv--g~~~~~~~~~-~~~~~l~~~ 58 (268)
T cd07940 21 EKLEIARQLDELGVDVIEA--GFPAASPGDF-EAVKRIARE 58 (268)
T ss_pred HHHHHHHHHHHcCCCEEEE--eCCCCCHHHH-HHHHHHHHh
Confidence 5678889999999999999 5655666666 556666553
No 368
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=52.02 E-value=70 Score=27.24 Aligned_cols=116 Identities=14% Similarity=0.085 Sum_probs=65.1
Q ss_pred ceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecC----c------------
Q 030024 26 VTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST----G------------ 89 (184)
Q Consensus 26 lT~V~DkG~s~~~g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~----G------------ 89 (184)
+..+.+=|+ + .+..++++++. | .|. +-.||+++.+.+.+++-.+.+-+-.|.++. |
T Consensus 75 ~pv~~~GGi--~-s~~d~~~~~~~-G--a~~--vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i 146 (254)
T TIGR00735 75 IPLTVGGGI--K-SIEDVDKLLRA-G--ADK--VSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYI 146 (254)
T ss_pred CCEEEECCC--C-CHHHHHHHHHc-C--CCE--EEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEE
Confidence 444444444 2 44555556663 4 444 466899999998888866555211233322 2
Q ss_pred -cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC--ChhHHHHHHHHHHHC-CCeEcccccccc
Q 030024 90 -DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI--PEETLLRYVRLVKSA-GLKAKPKFAVMF 154 (184)
Q Consensus 90 -tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i--~~~~r~~lI~~~~~~-Gf~v~~EvG~K~ 154 (184)
+|.+. ......++.+.+.+.|++.|.+++-.-.- +--+ .++++++++. ...|+.-=|...
T Consensus 147 ~gw~~~----~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~-~~~~~~i~~~~~ipvia~GGi~s 210 (254)
T TIGR00735 147 YGGRES----TGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYD-LELTKAVSEAVKIPVIASGGAGK 210 (254)
T ss_pred eCCccc----CCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCC-HHHHHHHHHhCCCCEEEeCCCCC
Confidence 23221 12367899999999999999996522210 1111 2455555544 455655444443
No 369
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=52.00 E-value=75 Score=28.73 Aligned_cols=98 Identities=16% Similarity=0.184 Sum_probs=59.4
Q ss_pred chhHHHHHHHhhccc-ccEEE-eeCccccccChhHHHHHHHHHHhCC--ceecCccHHHHHHHhCCchHHHHHHHHHHcC
Q 030024 39 SHNVLEDIFESMGQF-VDGLK-FSGGSHSLMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVG 114 (184)
Q Consensus 39 g~~~leDlLe~ag~y-ID~lK-fg~GTs~l~p~~~L~eKI~l~~~~g--V~v~~GtlfE~al~qg~~~~~~yl~~~k~lG 114 (184)
.+.++...+..+.++ +.-+- +|+++-...+-+.|.+.++..+++. |.+ |+. + .-.+-++.+++.|
T Consensus 104 s~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p~i~I------ei~----~-lt~e~~~~Lk~aG 172 (366)
T TIGR02351 104 NEEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLAREYFSSLAI------EVQ----P-LNEEEYKKLVEAG 172 (366)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCcccc------ccc----c-CCHHHHHHHHHcC
Confidence 344444444433332 33333 3444444455667888888887752 222 221 1 1233347899999
Q ss_pred CCEEEecCCcc-------------cCChhHHHHHHHHHHHCCCe-Ec
Q 030024 115 FDTIELNVGSL-------------EIPEETLLRYVRLVKSAGLK-AK 147 (184)
Q Consensus 115 F~~IEISdGti-------------~i~~~~r~~lI~~~~~~Gf~-v~ 147 (184)
++.+-++--|. .=+.++|++.|+++++.||. |.
T Consensus 173 v~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~ 219 (366)
T TIGR02351 173 LDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIG 219 (366)
T ss_pred CCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeec
Confidence 99998865553 11578899999999999997 53
No 370
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=51.99 E-value=42 Score=26.73 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=27.2
Q ss_pred cChhHHHHHHHHHHhC--CceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc
Q 030024 67 MPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS 124 (184)
Q Consensus 67 ~p~~~L~eKI~l~~~~--gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGt 124 (184)
++.+.+.+.|+-++.. +|.+ +|| | +++. .+.++++.+|+.|+...=.++++
T Consensus 46 lt~eel~~~I~~~~~~~~gVt~-SGG--E--l~~~--~l~~ll~~lk~~Gl~i~l~Tg~~ 98 (147)
T TIGR02826 46 LTPEYLTKTLDKYRSLISCVLF-LGG--E--WNRE--ALLSLLKIFKEKGLKTCLYTGLE 98 (147)
T ss_pred CCHHHHHHHHHHhCCCCCEEEE-ech--h--cCHH--HHHHHHHHHHHCCCCEEEECCCC
Confidence 3434455555555421 2332 343 3 3333 68888888888888653335444
No 371
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=51.91 E-value=32 Score=27.41 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=38.3
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCcee--cCcc
Q 030024 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV--STGD 90 (184)
Q Consensus 39 g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v--~~Gt 90 (184)
...++.+.+....++++.|=|.+|= +.+ +.|.+-++.+|++|+.+ .+|+
T Consensus 47 t~eel~~~I~~~~~~~~gVt~SGGE--l~~-~~l~~ll~~lk~~Gl~i~l~Tg~ 97 (147)
T TIGR02826 47 TPEYLTKTLDKYRSLISCVLFLGGE--WNR-EALLSLLKIFKEKGLKTCLYTGL 97 (147)
T ss_pred CHHHHHHHHHHhCCCCCEEEEechh--cCH-HHHHHHHHHHHHCCCCEEEECCC
Confidence 4557777777777889999999999 444 35999999999988854 5674
No 372
>PRK08508 biotin synthase; Provisional
Probab=51.89 E-value=1.3e+02 Score=26.10 Aligned_cols=68 Identities=15% Similarity=0.291 Sum_probs=33.0
Q ss_pred HHHHHHHHhCCceecC-c--cHHHHHHHh--CCchHHH---HHHHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHHH
Q 030024 73 EEVVKRAHQHDVYVST-G--DWAEHLIRN--GPSAFKE---YVEDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVKS 141 (184)
Q Consensus 73 ~eKI~l~~~~gV~v~~-G--tlfE~al~q--g~~~~~~---yl~~~k~lGF~~IEISdGti---~i~~~~r~~lI~~~~~ 141 (184)
++-++.++++|+.-++ + | -+..+.+ ....+++ .++.++++| +|+..|.| -=+.+++.+.+..+++
T Consensus 102 ~e~l~~Lk~aGld~~~~~lEt-~~~~~~~i~~~~~~~~~l~~i~~a~~~G---i~v~sg~I~GlGEt~ed~~~~l~~lr~ 177 (279)
T PRK08508 102 VEQLKELKKAGIFSYNHNLET-SKEFFPKICTTHTWEERFQTCENAKEAG---LGLCSGGIFGLGESWEDRISFLKSLAS 177 (279)
T ss_pred HHHHHHHHHcCCCEEcccccc-hHHHhcCCCCCCCHHHHHHHHHHHHHcC---CeecceeEEecCCCHHHHHHHHHHHHc
Confidence 3444555666664444 2 2 2222211 1123444 344566666 36666554 2344566666666665
Q ss_pred CCC
Q 030024 142 AGL 144 (184)
Q Consensus 142 ~Gf 144 (184)
.+-
T Consensus 178 L~~ 180 (279)
T PRK08508 178 LSP 180 (279)
T ss_pred CCC
Confidence 553
No 373
>PRK13561 putative diguanylate cyclase; Provisional
Probab=51.80 E-value=41 Score=31.97 Aligned_cols=93 Identities=16% Similarity=0.123 Sum_probs=56.8
Q ss_pred CCCCceeEec-CCCCCCcchhHHHHHHHhhcccccEEEeeCc--cccccChhHHHHHHHHHHhCCceecC-ccHHHHHHH
Q 030024 22 RRFGVTEMRS-PHYTLSSSHNVLEDIFESMGQFVDGLKFSGG--SHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIR 97 (184)
Q Consensus 22 R~~GlT~V~D-kG~s~~~g~~~leDlLe~ag~yID~lKfg~G--Ts~l~p~~~L~eKI~l~~~~gV~v~~-GtlfE~al~ 97 (184)
|..|....+| -|- |...+..+-....=-+|+||+--. ...-.++.+|+..++++|+.|+.|.- | .
T Consensus 544 ~~~G~~i~lddfG~----g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~viAeg-------V 612 (651)
T PRK13561 544 RNAGVRVALDDFGM----GYAGLRQLQHMKSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVIAEG-------V 612 (651)
T ss_pred HHCCCEEEEECCCC----CcccHHHHhhcCCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEec-------C
Confidence 5568887776 453 444444443322224899999521 11223567899999999999998775 5 0
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcc---cCChhHH
Q 030024 98 NGPSAFKEYVEDCKQVGFDTIELNVGSL---EIPEETL 132 (184)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti---~i~~~~r 132 (184)
.-++-++.++++|++.+- |+. ++|.++.
T Consensus 613 ----E~~~~~~~l~~~g~d~~Q---G~~~~~P~~~~~~ 643 (651)
T PRK13561 613 ----ETEAQRDWLLKAGVGIAQ---GFLFARALPIEIF 643 (651)
T ss_pred ----CCHHHHHHHHhcCCCEEe---CCcccCCCCHHHH
Confidence 112334557889998874 443 4555554
No 374
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=51.56 E-value=35 Score=32.43 Aligned_cols=99 Identities=18% Similarity=0.254 Sum_probs=60.7
Q ss_pred cCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHH---HHHHhCCceecCccHHHHHHHhCCchHHHHH
Q 030024 31 SPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVV---KRAHQHDVYVSTGDWAEHLIRNGPSAFKEYV 107 (184)
Q Consensus 31 DkG~s~~~g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI---~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl 107 (184)
=|||..++....|.++.+.+| +.|=+=+...+.. .+.|+ ++++++||++.||.. -. . ...++..
T Consensus 79 ~pGygflsen~~fae~~~~~g-----l~fiGP~~~~i~~--mgdK~~ar~~~~~aGVP~vpgs~--~~-~---~~~ee~~ 145 (449)
T COG0439 79 HPGYGFLSENAAFAEACAEAG-----LTFIGPSAEAIRR--MGDKITARRLMAKAGVPVVPGSD--GA-V---ADNEEAL 145 (449)
T ss_pred cccchhhhCCHHHHHHHHHcC-----CeeeCcCHHHHHH--hhhHHHHHHHHHHcCCCcCCCCC--CC-c---CCHHHHH
Confidence 367765556677888888888 4443333333322 44444 578889998888851 11 1 1457888
Q ss_pred HHHHHcCCCEE-EecCCcc------cCChhHHHHHHHHHHHC
Q 030024 108 EDCKQVGFDTI-ELNVGSL------EIPEETLLRYVRLVKSA 142 (184)
Q Consensus 108 ~~~k~lGF~~I-EISdGti------~i~~~~r~~lI~~~~~~ 142 (184)
+.++++||..| .=+.|-- -=+.++....+..+++.
T Consensus 146 ~~a~~iGyPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~~e 187 (449)
T COG0439 146 AIAEEIGYPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGE 187 (449)
T ss_pred HHHHHcCCCEEEEECCCCCcccEEEECCHHHHHHHHHHHHHH
Confidence 88889998865 4444432 23566666666666654
No 375
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=51.53 E-value=96 Score=24.68 Aligned_cols=103 Identities=15% Similarity=0.183 Sum_probs=61.2
Q ss_pred HHHHHHHhhcccccEEEeeCccccccC-hhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 030024 42 VLEDIFESMGQFVDGLKFSGGSHSLMP-KPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (184)
Q Consensus 42 ~leDlLe~ag~yID~lKfg~GTs~l~p-~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEI 120 (184)
.+.++|...+-.-+-+-|-.--....+ .+.+.+.++.++++|+.+....+ | .-..-++.+..+.++.|-|
T Consensus 104 ~l~~~l~~~~~~~~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~~ialddf-------g--~~~~~~~~l~~l~~d~iKl 174 (241)
T smart00052 104 RVLELLEETGLPPQRLELEITESVLLDDDESAVATLQRLRELGVRIALDDF-------G--TGYSSLSYLKRLPVDLLKI 174 (241)
T ss_pred HHHHHHHHcCCCHHHEEEEEeChhhhcChHHHHHHHHHHHHCCCEEEEeCC-------C--CcHHHHHHHHhCCCCeEEE
Confidence 345555555544445555544433332 33455888888999988876321 0 0011133456678999999
Q ss_pred cCCcccCC------hhHHHHHHHHHHHCCCeEcccccccc
Q 030024 121 NVGSLEIP------EETLLRYVRLVKSAGLKAKPKFAVMF 154 (184)
Q Consensus 121 SdGti~i~------~~~r~~lI~~~~~~Gf~v~~EvG~K~ 154 (184)
+-..+.-- ......+++.+++.|.+|+.| |+.+
T Consensus 175 d~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~-gVe~ 213 (241)
T smart00052 175 DKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAE-GVET 213 (241)
T ss_pred CHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEe-cCCC
Confidence 87765321 133456778888999999887 5554
No 376
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=51.48 E-value=53 Score=27.37 Aligned_cols=100 Identities=16% Similarity=0.249 Sum_probs=57.3
Q ss_pred chhHHHHHHHhhccc----ccEEEeeCccccccChhHHHHHHHHHHhCCceec--C-ccHHHHHHHhCCchHHHHHHHHH
Q 030024 39 SHNVLEDIFESMGQF----VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--T-GDWAEHLIRNGPSAFKEYVEDCK 111 (184)
Q Consensus 39 g~~~leDlLe~ag~y----ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~--~-GtlfE~al~qg~~~~~~yl~~~k 111 (184)
.+.++-+.+.....+ .+.|.|++|=-.+ ..+.+.+-++.+++.|+.+. + |++.. -++.+++.++.
T Consensus 52 t~eei~~~i~~~~~~~~~~~~~V~~sGGEPll-~~~~~~~l~~~~k~~g~~i~l~TNG~~~~-----~~~~~~~ll~~-- 123 (246)
T PRK11145 52 TVEELMKEVVTYRHFMNASGGGVTASGGEAIL-QAEFVRDWFRACKKEGIHTCLDTNGFVRR-----YDPVIDELLDV-- 123 (246)
T ss_pred CHHHHHHHHHHhHHHHhcCCCeEEEeCccHhc-CHHHHHHHHHHHHHcCCCEEEECCCCCCc-----chHHHHHHHHh--
Confidence 444666666665554 3589999887655 55678899999999998653 3 64321 00122322222
Q ss_pred HcCCCEEEecCCcc---------cCChhHHHHHHHHHHHCCCeEccc
Q 030024 112 QVGFDTIELNVGSL---------EIPEETLLRYVRLVKSAGLKAKPK 149 (184)
Q Consensus 112 ~lGF~~IEISdGti---------~i~~~~r~~lI~~~~~~Gf~v~~E 149 (184)
+|.|=||=-+. ..+.+.-.+.|+.+++.|.++.-+
T Consensus 124 ---~d~v~islk~~~~e~~~~~~g~~~~~~l~~i~~l~~~g~~v~i~ 167 (246)
T PRK11145 124 ---TDLVMLDLKQMNDEIHQNLVGVSNHRTLEFARYLAKRNQKTWIR 167 (246)
T ss_pred ---CCEEEECCCcCChhhcccccCCChHHHHHHHHHHHhCCCcEEEE
Confidence 34443432221 123344446678888999876544
No 377
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=51.42 E-value=30 Score=32.16 Aligned_cols=84 Identities=18% Similarity=0.298 Sum_probs=59.3
Q ss_pred HHhhcccccEEEeeCccccccC-hhHHHHHHHHHHhCCceecCc---c-HHHHHHHh-CC-------chHHHHHHHHHHc
Q 030024 47 FESMGQFVDGLKFSGGSHSLMP-KPFIEEVVKRAHQHDVYVSTG---D-WAEHLIRN-GP-------SAFKEYVEDCKQV 113 (184)
Q Consensus 47 Le~ag~yID~lKfg~GTs~l~p-~~~L~eKI~l~~~~gV~v~~G---t-lfE~al~q-g~-------~~~~~yl~~~k~l 113 (184)
|+.+-.=+|-|-+-=|.- =. ++.+++.++.|+++||++--| | |=...+.+ |. .+.-++++.|.++
T Consensus 95 l~a~~~G~~~iRINPGNi--g~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~ 172 (360)
T PRK00366 95 LAAAEAGADALRINPGNI--GKRDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEEL 172 (360)
T ss_pred HHHHHhCCCEEEECCCCC--CchHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHC
Confidence 344434488888887774 33 567999999999999988765 3 43333332 21 1356789999999
Q ss_pred CCCEEEecCCcccCChhHH
Q 030024 114 GFDTIELNVGSLEIPEETL 132 (184)
Q Consensus 114 GF~~IEISdGti~i~~~~r 132 (184)
||+-|=||--+-+.+.--.
T Consensus 173 ~f~~iviS~KsS~v~~~i~ 191 (360)
T PRK00366 173 GFDDIKISVKASDVQDLIA 191 (360)
T ss_pred CCCcEEEEEEcCCHHHHHH
Confidence 9999999988777665443
No 378
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=51.42 E-value=41 Score=30.91 Aligned_cols=45 Identities=22% Similarity=0.186 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCCEEEec---------CCcccCChhHHHHHHHHHHHCCCeEcc
Q 030024 104 KEYVEDCKQVGFDTIELN---------VGSLEIPEETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 104 ~~yl~~~k~lGF~~IEIS---------dGti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (184)
++..+.+++.|.+.+.-+ +=..+-+-++|.+-++.+++.|++|-+
T Consensus 144 ~eq~~~L~~aGvd~ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcs 197 (335)
T COG0502 144 EEQAEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCS 197 (335)
T ss_pred HHHHHHHHHcChhheecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCcccc
Confidence 455666889999988773 233467889999999999999999955
No 379
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=51.20 E-value=42 Score=29.60 Aligned_cols=70 Identities=23% Similarity=0.297 Sum_probs=48.7
Q ss_pred ccChhHHHHHHHHHHhCCc-eecC-ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCC
Q 030024 66 LMPKPFIEEVVKRAHQHDV-YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAG 143 (184)
Q Consensus 66 l~p~~~L~eKI~l~~~~gV-~v~~-GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G 143 (184)
-++.+.+++.++-+.+.|+ .+.. || |-.+.. .+.+.++.+++.|+...=++||++ |++ +.++.+++.|
T Consensus 36 ~l~~e~~~~ii~~~~~~g~~~v~~~GG--EPll~~---~~~~ii~~~~~~g~~~~l~TNG~l-l~~----e~~~~L~~~g 105 (358)
T TIGR02109 36 ELTTEEWTDVLTQAAELGVLQLHFSGG--EPLARP---DLVELVAHARRLGLYTNLITSGVG-LTE----ARLDALADAG 105 (358)
T ss_pred CCCHHHHHHHHHHHHhcCCcEEEEeCc--cccccc---cHHHHHHHHHHcCCeEEEEeCCcc-CCH----HHHHHHHhCC
Confidence 3566778889999999987 3333 53 444433 588999999999997666788864 443 3456666777
Q ss_pred Ce
Q 030024 144 LK 145 (184)
Q Consensus 144 f~ 145 (184)
+.
T Consensus 106 ~~ 107 (358)
T TIGR02109 106 LD 107 (358)
T ss_pred CC
Confidence 75
No 380
>PRK09248 putative hydrolase; Validated
Probab=51.18 E-value=41 Score=28.31 Aligned_cols=44 Identities=23% Similarity=0.278 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc---CC-hhHHHHHHHHHHHCCCeE
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGSLE---IP-EETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~---i~-~~~r~~lI~~~~~~Gf~v 146 (184)
.+++.++.+++.|. +|||+.+.+. .+ ...-..+++.+++.|+.+
T Consensus 141 ~~~~~~~~~~~~g~-~lEvN~~~l~~~~~g~~~~~~~~~~~~~~~g~~~ 188 (246)
T PRK09248 141 DIEAVVKAAKEHNV-ALEINNSSFGHSRKGSEDNCRAIAALCKKAGVWV 188 (246)
T ss_pred cHHHHHHHHHHhCC-EEEEECCCCccCCCCCcChHHHHHHHHHHcCCeE
Confidence 46788899999999 9999999872 11 112346889999999876
No 381
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=51.11 E-value=38 Score=28.84 Aligned_cols=76 Identities=14% Similarity=0.086 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHhCCc-eec-CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCe
Q 030024 69 KPFIEEVVKRAHQHDV-YVS-TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 69 ~~~L~eKI~l~~~~gV-~v~-~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (184)
.+.+++-|+.+-+.|| -++ .||--|...... +.-.+.++.+.+.-=..+.|-.|.-..+.++-.++.+.+++.|..
T Consensus 17 ~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~-~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad 94 (281)
T cd00408 17 LDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTD-EERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGAD 94 (281)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCcccccCCH-HHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCC
Confidence 3446666666666666 222 244333332211 122233332222211334455555555666666666666666654
No 382
>PRK15447 putative protease; Provisional
Probab=50.93 E-value=48 Score=29.26 Aligned_cols=45 Identities=13% Similarity=0.218 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc----cCChhHHHHHHHHHHHCCCeE
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGSL----EIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti----~i~~~~r~~lI~~~~~~Gf~v 146 (184)
++..|...+.+.|.|+|=+..... ..+.++..+.|+.+++.|-+|
T Consensus 16 ~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkv 64 (301)
T PRK15447 16 TVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEV 64 (301)
T ss_pred CHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEE
Confidence 677777777777777777764432 367777777777777777665
No 383
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=50.93 E-value=21 Score=31.42 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=38.7
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEE-----EeeCccccccChhHHHHHHHHHHhCCceecCccHHH
Q 030024 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGL-----KFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAE 93 (184)
Q Consensus 24 ~GlT~V~DkG~s~~~g~~~leDlLe~ag~yID~l-----Kfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE 93 (184)
.++-.+.|=.+ . ++..++.+++.. -+|++ |.|+ +.+ ..+.+++|+++||++++|++.|
T Consensus 239 ~~ipi~~dE~~--~-~~~~~~~~i~~~--~~d~v~~k~~~~GG----i~~---~~~i~~~a~~~g~~~~~~~~~~ 301 (357)
T cd03316 239 TSVPIAAGENL--Y-TRWEFRDLLEAG--AVDIIQPDVTKVGG----ITE---AKKIAALAEAHGVRVAPHGAGG 301 (357)
T ss_pred CCCCEEecccc--c-cHHHHHHHHHhC--CCCEEecCccccCC----HHH---HHHHHHHHHHcCCeEeccCCCC
Confidence 34555555543 3 667777777643 35555 5555 332 6788899999999999987644
No 384
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=50.92 E-value=52 Score=26.18 Aligned_cols=80 Identities=14% Similarity=0.051 Sum_probs=56.4
Q ss_pred hcccccEEEeeCccccccChhHHHHHHHHHHhCCc-eecC-ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC
Q 030024 50 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI 127 (184)
Q Consensus 50 ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~-GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i 127 (184)
.+++| +-|-.+ |+++..+ |.+ +++++|| .+.. |.-.++|+.+- ...+.++||+++=++|.+-+.
T Consensus 87 ~~~~v-~~K~~~--saF~~t~-L~~---~L~~~gi~~vvi~G~~t~~CV~~T-------a~~A~~~Gy~v~vv~Da~a~~ 152 (179)
T cd01015 87 EDEMV-LVKKYA--SAFFGTS-LAA---TLTARGVDTLIVAGCSTSGCIRAT-------AVDAMQHGFRPIVVRECVGDR 152 (179)
T ss_pred CCCEE-EecCcc--CCccCCc-HHH---HHHHcCCCEEEEeeecccHhHHHH-------HHHHHHCCCeEEEeeccccCC
Confidence 34443 556553 3444432 444 4578998 4444 77888888774 245789999999999999999
Q ss_pred ChhHHHHHHHHHHHCC
Q 030024 128 PEETLLRYVRLVKSAG 143 (184)
Q Consensus 128 ~~~~r~~lI~~~~~~G 143 (184)
+.+.....+..++..+
T Consensus 153 ~~~~h~~al~~l~~~~ 168 (179)
T cd01015 153 APAPHEANLFDIDNKY 168 (179)
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999888888887653
No 385
>PRK12928 lipoyl synthase; Provisional
Probab=50.92 E-value=58 Score=28.82 Aligned_cols=105 Identities=10% Similarity=0.092 Sum_probs=53.4
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecC------ccHHHHHHHhCCchHHHH---HHH
Q 030024 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST------GDWAEHLIRNGPSAFKEY---VED 109 (184)
Q Consensus 39 g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~------GtlfE~al~qg~~~~~~y---l~~ 109 (184)
|...+.++++..-.....+.+-..|.-+... .++.+....++|..++. --++..+-.+. ..+++ ++.
T Consensus 121 g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~--~~e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~--t~e~~le~l~~ 196 (290)
T PRK12928 121 GAAHFVATIAAIRARNPGTGIEVLTPDFWGG--QRERLATVLAAKPDVFNHNLETVPRLQKAVRRGA--DYQRSLDLLAR 196 (290)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEeccccccC--CHHHHHHHHHcCchhhcccCcCcHHHHHHhCCCC--CHHHHHHHHHH
Confidence 4456777776654443333333222222111 34445555556655554 13555443222 34444 466
Q ss_pred HHHcC--CCE-EEecCCcccCChhHHHHHHHHHHHCCCeEcc
Q 030024 110 CKQVG--FDT-IELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 110 ~k~lG--F~~-IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (184)
++++| +.. -=+--|+ -=+.+++.+.++.+++.++.-.+
T Consensus 197 ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel~~d~v~ 237 (290)
T PRK12928 197 AKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAVGCDRLT 237 (290)
T ss_pred HHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhcCCCEEE
Confidence 77777 221 1222255 55777788888888887775433
No 386
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=50.79 E-value=29 Score=31.39 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCC
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 144 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf 144 (184)
.-.++++.+.++||+.||+ |+-.+++.++ +.++.+.+.+.
T Consensus 24 ~k~~ia~~L~~~Gv~~IEv--G~p~~~~~~~-e~i~~i~~~~~ 63 (365)
T TIGR02660 24 EKLAIARALDEAGVDELEV--GIPAMGEEER-AVIRAIVALGL 63 (365)
T ss_pred HHHHHHHHHHHcCCCEEEE--eCCCCCHHHH-HHHHHHHHcCC
Confidence 3456777788899999999 4555666665 56677766654
No 387
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=50.69 E-value=70 Score=30.36 Aligned_cols=100 Identities=18% Similarity=0.340 Sum_probs=77.3
Q ss_pred hHHHHHHHhhcccccEE-EeeCccccccChhHHHHHHHHHHhC-------CceecCc--cHHHHHHHhCCchHHHHHHHH
Q 030024 41 NVLEDIFESMGQFVDGL-KFSGGSHSLMPKPFIEEVVKRAHQH-------DVYVSTG--DWAEHLIRNGPSAFKEYVEDC 110 (184)
Q Consensus 41 ~~leDlLe~ag~yID~l-Kfg~GTs~l~p~~~L~eKI~l~~~~-------gV~v~~G--tlfE~al~qg~~~~~~yl~~~ 110 (184)
..|.+||+..+. |+++ -+=++ +++|.+...+.|+++.+. .+++-.| .-+..+-+.- ..++|++.+
T Consensus 212 ~~l~~Ll~~l~~-I~G~~riR~~--~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~y--t~e~~~~~i 286 (437)
T COG0621 212 PNLADLLRELSK-IPGIERIRFG--SSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMKRGY--TVEEYLEII 286 (437)
T ss_pred cCHHHHHHHHhc-CCCceEEEEe--cCCchhcCHHHHHHHhcCCcccccccCccccCCHHHHHHhCCCc--CHHHHHHHH
Confidence 468899999998 8743 23333 388999999999999986 4455557 3666665555 799999999
Q ss_pred HHc--CCCEEEecCCcc----cCChhHHHHHHHHHHHCCCe
Q 030024 111 KQV--GFDTIELNVGSL----EIPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 111 k~l--GF~~IEISdGti----~i~~~~r~~lI~~~~~~Gf~ 145 (184)
+++ -+.-+-||..+| .=++++..+..+.+++.+|.
T Consensus 287 ~k~R~~~Pd~~i~tDiIVGFPgETeedFe~tl~lv~e~~fd 327 (437)
T COG0621 287 EKLRAARPDIAISTDIIVGFPGETEEDFEETLDLVEEVRFD 327 (437)
T ss_pred HHHHHhCCCceEeccEEEECCCCCHHHHHHHHHHHHHhCCC
Confidence 998 688888887666 67888899999998888875
No 388
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=50.66 E-value=1.5e+02 Score=25.41 Aligned_cols=77 Identities=16% Similarity=0.134 Sum_probs=49.7
Q ss_pred HHHHHHHhhccc-ccEEEeeCcc--------ccccChhHHHHHHHHHHhC-CceecCc-cHHHHHHHhCCchHHHHHHHH
Q 030024 42 VLEDIFESMGQF-VDGLKFSGGS--------HSLMPKPFIEEVVKRAHQH-DVYVSTG-DWAEHLIRNGPSAFKEYVEDC 110 (184)
Q Consensus 42 ~leDlLe~ag~y-ID~lKfg~GT--------s~l~p~~~L~eKI~l~~~~-gV~v~~G-tlfE~al~qg~~~~~~yl~~~ 110 (184)
.+.+..+.+-++ +|++=+-++| +.....+.+.+.++-.++. +++|..- +. +.+.+.+..+.+
T Consensus 103 ~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~-------~~~~~~~~a~~~ 175 (296)
T cd04740 103 EFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP-------NVTDIVEIARAA 175 (296)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC-------CchhHHHHHHHH
Confidence 444444444444 6777664443 3445667788888888888 7777652 21 112466777888
Q ss_pred HHcCCCEEEecCCcc
Q 030024 111 KQVGFDTIELNVGSL 125 (184)
Q Consensus 111 k~lGF~~IEISdGti 125 (184)
.+.|.|.|-++|.+.
T Consensus 176 ~~~G~d~i~~~nt~~ 190 (296)
T cd04740 176 EEAGADGLTLINTLK 190 (296)
T ss_pred HHcCCCEEEEECCCc
Confidence 999999999876543
No 389
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=50.58 E-value=46 Score=29.59 Aligned_cols=50 Identities=6% Similarity=0.112 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHH----HHHHHHHHHCCCeEccccccccCC
Q 030024 105 EYVEDCKQVGFDTIELNVGSLEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNK 156 (184)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r----~~lI~~~~~~Gf~v~~EvG~K~~~ 156 (184)
+.+..|-+.||+.|=+.--. +|.++= .++++.|...|.-|-.|+|.=-+.
T Consensus 88 e~i~~ai~~GftSVMiDgS~--lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~ 141 (284)
T PRK12737 88 DDIKKKVRAGIRSVMIDGSH--LSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQ 141 (284)
T ss_pred HHHHHHHHcCCCeEEecCCC--CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCc
Confidence 56677889999999987555 444443 367788888999999999876443
No 390
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=50.46 E-value=49 Score=27.55 Aligned_cols=13 Identities=8% Similarity=-0.061 Sum_probs=6.7
Q ss_pred HHHHHHHHHHcCC
Q 030024 103 FKEYVEDCKQVGF 115 (184)
Q Consensus 103 ~~~yl~~~k~lGF 115 (184)
+-+.++.+++.|+
T Consensus 150 ~l~~i~~l~~~g~ 162 (246)
T PRK11145 150 TLEFARYLAKRNQ 162 (246)
T ss_pred HHHHHHHHHhCCC
Confidence 3344455566664
No 391
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=50.40 E-value=51 Score=29.02 Aligned_cols=97 Identities=12% Similarity=-0.007 Sum_probs=60.3
Q ss_pred hHHHHHHHhhcccccEEEeeCccccccCh-----------hHHHHHHHHHHhCCceecCccHHHHHHHhCC-c----hHH
Q 030024 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGP-S----AFK 104 (184)
Q Consensus 41 ~~leDlLe~ag~yID~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~-~----~~~ 104 (184)
+-++..+++ =+|.+-+-..+|-.+.+ +.+++-|++++++|+.|..+- |-+..-.. + -+.
T Consensus 78 ~die~A~~~---g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~--ed~~r~d~~~~v~~~~~ 152 (279)
T cd07947 78 EDLKLVKEM---GLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL--EDITRADIYGFVLPFVN 152 (279)
T ss_pred HHHHHHHHc---CcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE--EcccCCCcccchHHHHH
Confidence 344555554 34556665666544433 236778899999998766532 33333322 1 456
Q ss_pred HHHHHHHHcCCC-EEEecCCcccCCh-------hHHHHHHHHHHHC
Q 030024 105 EYVEDCKQVGFD-TIELNVGSLEIPE-------ETLLRYVRLVKSA 142 (184)
Q Consensus 105 ~yl~~~k~lGF~-~IEISdGti~i~~-------~~r~~lI~~~~~~ 142 (184)
++++.+.+.|.+ .|=+.|-.--..+ ++-.++++.+++.
T Consensus 153 ~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~ 198 (279)
T cd07947 153 KLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKD 198 (279)
T ss_pred HHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHh
Confidence 666667779999 6888887765544 4555888888765
No 392
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=50.38 E-value=38 Score=29.24 Aligned_cols=76 Identities=9% Similarity=0.088 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHhCCc-eec-CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCe
Q 030024 69 KPFIEEVVKRAHQHDV-YVS-TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 69 ~~~L~eKI~l~~~~gV-~v~-~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (184)
.+.+++-|+.+-+.|| -++ .|+--|...... +.-.+.++...+.-=..+.|-.|....+.++=.++++.+++.|..
T Consensus 21 ~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~-~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d 98 (292)
T PRK03170 21 FAALRKLVDYLIANGTDGLVVVGTTGESPTLTH-EEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGAD 98 (292)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcCCccccCCH-HHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCC
Confidence 4556677777777766 222 253333322111 122222222222110223344555556666666777777776655
No 393
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=50.34 E-value=88 Score=27.87 Aligned_cols=107 Identities=14% Similarity=0.201 Sum_probs=58.6
Q ss_pred cEEEeeCcccc--ccChhHHHHHHHHHHhC-CceecC--c-cHHHHHHHh---CCchHHHHHHHHHHcCC---CEEEecC
Q 030024 55 DGLKFSGGSHS--LMPKPFIEEVVKRAHQH-DVYVST--G-DWAEHLIRN---GPSAFKEYVEDCKQVGF---DTIELNV 122 (184)
Q Consensus 55 D~lKfg~GTs~--l~p~~~L~eKI~l~~~~-gV~v~~--G-tlfE~al~q---g~~~~~~yl~~~k~lGF---~~IEISd 122 (184)
+.++.+.+-.. -.+.+.|++-+++++++ |+++.. . +-.|..... + ..+.++++..++|+ +.+ ++=
T Consensus 169 g~i~~~~~~~~~~~~s~e~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~~~--~~~~~~~~l~~~g~lg~~~~-~~H 245 (401)
T TIGR02967 169 GRLLYAVTPRFAPTSSPEQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKELFP--EAKDYLDVYDHYGLLGRRSV-FAH 245 (401)
T ss_pred CCceEEEECCcCCcCcHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHcC--CCCcHHHHHHHCCCCCCCeE-EEe
Confidence 34666544322 23467899999999999 998875 3 433332221 2 22344666667776 222 122
Q ss_pred CcccCChhHHHHHHHHHHHCCCeE--ccccccccCCCCCCchhhhhccc
Q 030024 123 GSLEIPEETLLRYVRLVKSAGLKA--KPKFAVMFNKSDIPSDRDRAFGA 169 (184)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~Gf~v--~~EvG~K~~~~~~~~~~~~a~ga 169 (184)
+ ..+++++ ++++++.|..| .|..+.+.+..-.++..+.+.|.
T Consensus 246 ~-~~~~~~~----~~~l~~~g~~v~~~P~~~~~~~~g~~~~~~~~~~Gv 289 (401)
T TIGR02967 246 C-IHLSDEE----CQRLAETGAAIAHCPTSNLFLGSGLFNLKKALEHGV 289 (401)
T ss_pred c-ccCCHHH----HHHHHHcCCeEEEChHHHHHhccCCCCHHHHHHCCC
Confidence 2 2355543 66777788654 55544444444445555555443
No 394
>PRK07369 dihydroorotase; Provisional
Probab=50.23 E-value=2.1e+02 Score=26.35 Aligned_cols=31 Identities=16% Similarity=0.151 Sum_probs=26.1
Q ss_pred cCChhHHHHHHHHHHHCCCeEccccccccCC
Q 030024 126 EIPEETLLRYVRLVKSAGLKAKPKFAVMFNK 156 (184)
Q Consensus 126 ~i~~~~r~~lI~~~~~~Gf~v~~EvG~K~~~ 156 (184)
-++..+=.++|+++|+.|.+|..|+-...-.
T Consensus 234 HvSs~~~~~~i~~ak~~g~~vt~Ev~phhL~ 264 (418)
T PRK07369 234 RISTARSVELIAQAKARGLPITASTTWMHLL 264 (418)
T ss_pred eCCCHHHHHHHHHHHHcCCCeEEEecHHHHh
Confidence 5777888899999999999999999877544
No 395
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=50.20 E-value=44 Score=29.02 Aligned_cols=65 Identities=12% Similarity=0.207 Sum_probs=33.3
Q ss_pred ccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCe
Q 030024 66 LMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 66 l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (184)
.+|.+..++..+.|+++||.+..=-|-+.. ++.+.++|++.+-|..+.+. -..+++.+++.|..
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~~s-----------~d~l~~~~~~~~KIaS~dl~-----n~~lL~~~A~tgkP 115 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDEES-----------VDFLEELGVPAYKIASGDLT-----NLPLLEYIAKTGKP 115 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SHHH-----------HHHHHHHT-SEEEE-GGGTT------HHHHHHHHTT-S-
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCHHH-----------HHHHHHcCCCEEEecccccc-----CHHHHHHHHHhCCc
Confidence 577888999999999999966543232222 12244455555555544433 23444555555444
Q ss_pred E
Q 030024 146 A 146 (184)
Q Consensus 146 v 146 (184)
+
T Consensus 116 v 116 (241)
T PF03102_consen 116 V 116 (241)
T ss_dssp E
T ss_pred E
Confidence 4
No 396
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=50.18 E-value=36 Score=31.67 Aligned_cols=17 Identities=29% Similarity=0.702 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHcCCCEE
Q 030024 102 AFKEYVEDCKQVGFDTI 118 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~I 118 (184)
.+++.+++++++|+.+|
T Consensus 50 ~~~ell~~Anklg~~vi 66 (360)
T COG3589 50 RFKELLKEANKLGLRVI 66 (360)
T ss_pred HHHHHHHHHHhcCcEEE
Confidence 34555555555555543
No 397
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=50.02 E-value=60 Score=30.38 Aligned_cols=99 Identities=17% Similarity=0.119 Sum_probs=69.6
Q ss_pred HHHHHHHhhcccccEEEeeC--------ccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHc
Q 030024 42 VLEDIFESMGQFVDGLKFSG--------GSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQV 113 (184)
Q Consensus 42 ~leDlLe~ag~yID~lKfg~--------GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~l 113 (184)
.++.+++.--+-|.++.=.| +++.-..-+.+.+-++.+++||+.+.. ..|.+..-.++.+-+.++.+.+.
T Consensus 81 ~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~--~~Ed~~rt~~~~l~~~~~~~~~~ 158 (409)
T COG0119 81 DIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRF--SAEDATRTDPEFLAEVVKAAIEA 158 (409)
T ss_pred hHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE--EeeccccCCHHHHHHHHHHHHHc
Confidence 34555555555555443333 122222334567788999999987764 34444466666777788888899
Q ss_pred CCCEEEecCCcccCChhHHHHHHHHHHHC
Q 030024 114 GFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 114 GF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (184)
|.+.|=+-|-.--..+.+-.++|+.+++.
T Consensus 159 ga~~i~l~DTvG~~~P~~~~~~i~~l~~~ 187 (409)
T COG0119 159 GADRINLPDTVGVATPNEVADIIEALKAN 187 (409)
T ss_pred CCcEEEECCCcCccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999987
No 398
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=49.77 E-value=1.1e+02 Score=27.74 Aligned_cols=115 Identities=9% Similarity=0.039 Sum_probs=74.0
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C-Cc
Q 030024 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G-PS 101 (184)
Q Consensus 27 T~V~DkG~s~~~g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g-~~ 101 (184)
|.-++-|-+..-.+..++.+++..-.+++..+-.-=|.-.-|..+-.++++.++++|| .++.| ++-+..+.. | ..
T Consensus 58 tiy~GGGTPs~l~~~~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~R~~ 137 (380)
T PRK09057 58 SIFFGGGTPSLMQPETVAALLDAIARLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLH 137 (380)
T ss_pred eEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCC
Confidence 6666666544337789999999998887665432223445677777899999999999 88889 777766643 1 12
Q ss_pred h---HHHHHHHHHHcCCCEEEecCCc-ccCChh---HHHHHHHHHHHCCC
Q 030024 102 A---FKEYVEDCKQVGFDTIELNVGS-LEIPEE---TLLRYVRLVKSAGL 144 (184)
Q Consensus 102 ~---~~~yl~~~k~lGF~~IEISdGt-i~i~~~---~r~~lI~~~~~~Gf 144 (184)
. +.+-++.+++. |.. ||--. .-+|-+ ++.+-++.+.+.+.
T Consensus 138 ~~~~~~~ai~~~~~~-~~~--v~~dli~GlPgqt~~~~~~~l~~~~~l~p 184 (380)
T PRK09057 138 SVAEALAAIDLAREI-FPR--VSFDLIYARPGQTLAAWRAELKEALSLAA 184 (380)
T ss_pred CHHHHHHHHHHHHHh-Ccc--EEEEeecCCCCCCHHHHHHHHHHHHhcCC
Confidence 3 44556666776 433 33222 244544 45566777776653
No 399
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=49.53 E-value=75 Score=26.30 Aligned_cols=42 Identities=24% Similarity=0.322 Sum_probs=25.8
Q ss_pred HHHHHHH-HHHcCCCE-----EEecC-Cccc----CChhHHHHHHHHHHHCCC
Q 030024 103 FKEYVED-CKQVGFDT-----IELNV-GSLE----IPEETLLRYVRLVKSAGL 144 (184)
Q Consensus 103 ~~~yl~~-~k~lGF~~-----IEISd-Gti~----i~~~~r~~lI~~~~~~Gf 144 (184)
++.+.+. ++++||+. +|+.+ |.++ ...+.|..+++..++.|.
T Consensus 93 ~~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~~~~~ 145 (203)
T TIGR02137 93 FYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLYY 145 (203)
T ss_pred hHHHHHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHHHHHhhCC
Confidence 3444432 56677763 56666 5443 556678888888877764
No 400
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=49.23 E-value=1.1e+02 Score=27.19 Aligned_cols=50 Identities=20% Similarity=0.389 Sum_probs=37.3
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHH----HHHHHHHHHCCCeEccccccccCC
Q 030024 105 EYVEDCKQVGFDTIELNVGSLEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNK 156 (184)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r----~~lI~~~~~~Gf~v~~EvG~K~~~ 156 (184)
+.+..|-+.||+.|=+.--.+ |.++= .++++.|...|.-|-.|+|.=-+.
T Consensus 88 e~i~~ai~~GftSVM~DgS~l--p~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~ 141 (284)
T PRK12857 88 EQVMKCIRNGFTSVMIDGSKL--PLEENIALTKKVVEIAHAVGVSVEAELGKIGGT 141 (284)
T ss_pred HHHHHHHHcCCCeEEEeCCCC--CHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCc
Confidence 456678889999999975554 44443 367888889999999999976443
No 401
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=49.12 E-value=35 Score=27.85 Aligned_cols=41 Identities=29% Similarity=0.378 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHC
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSA 142 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti-------------~i~~~~r~~lI~~~~~~ 142 (184)
.+.+..+.+++.|||.|||+-|+- .=..+.-.++|+.+++.
T Consensus 68 ~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~ 121 (231)
T cd02801 68 TLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREA 121 (231)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHh
Confidence 444555567788999999997651 12333345667766653
No 402
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=49.03 E-value=31 Score=36.55 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=37.2
Q ss_pred HHhCCchHHHHHHHHHHcCCCEEEecCC-cccCChhHHHHHHHHHHHCCCeEcc
Q 030024 96 IRNGPSAFKEYVEDCKQVGFDTIELNVG-SLEIPEETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 96 l~qg~~~~~~yl~~~k~lGF~~IEISdG-ti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (184)
+..|..+++++++.|+++|+++|=|+|- ++ .--.+..+.+++.|++++.
T Consensus 14 lLdg~~~i~elv~~A~~~G~~alAiTDh~~l----~G~~~f~~~~~~~gIkpIi 63 (1170)
T PRK07374 14 LLDGASQLPKMVERAKELGMPAIALTDHGVM----YGAIELLKLCKGKGIKPII 63 (1170)
T ss_pred hhhccCCHHHHHHHHHHCCCCEEEEecCCch----HHHHHHHHHHHHcCCeEEE
Confidence 4466668999999999999999999984 33 3334667788888988865
No 403
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=49.01 E-value=17 Score=32.65 Aligned_cols=28 Identities=11% Similarity=0.116 Sum_probs=25.1
Q ss_pred cCChhHHHHHHHHHHHCCCeEccccccc
Q 030024 126 EIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (184)
Q Consensus 126 ~i~~~~r~~lI~~~~~~Gf~v~~EvG~K 153 (184)
-.+.++-.+||+.|+++|..|+||+-.-
T Consensus 71 ~YT~~di~elv~yA~~rgI~vIPEiD~P 98 (329)
T cd06568 71 YYTQEDYKDIVAYAAERHITVVPEIDMP 98 (329)
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEecCCc
Confidence 4789999999999999999999999754
No 404
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=48.82 E-value=18 Score=32.54 Aligned_cols=68 Identities=19% Similarity=0.378 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHhC-----CceecCccHHHHHHHhCCchHHHHH---HHHHHcCCCEEEecCCcccCC-----hhHHHHHH
Q 030024 70 PFIEEVVKRAHQH-----DVYVSTGDWAEHLIRNGPSAFKEYV---EDCKQVGFDTIELNVGSLEIP-----EETLLRYV 136 (184)
Q Consensus 70 ~~L~eKI~l~~~~-----gV~v~~GtlfE~al~qg~~~~~~yl---~~~k~lGF~~IEISdGti~i~-----~~~r~~lI 136 (184)
..+.|.|+-.|+. +|++++-.+.+- | ...++++ +.+.+.|+|.|+||.|+...+ +.-...++
T Consensus 193 Rf~~eii~~ir~~~~~~v~vRis~~d~~~~----G-~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~ 267 (337)
T PRK13523 193 RFLREIIDAVKEVWDGPLFVRISASDYHPG----G-LTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFA 267 (337)
T ss_pred HHHHHHHHHHHHhcCCCeEEEecccccCCC----C-CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHH
Confidence 4556666666664 344544223221 2 2344444 555556999999999985321 22233555
Q ss_pred HHHHHC
Q 030024 137 RLVKSA 142 (184)
Q Consensus 137 ~~~~~~ 142 (184)
+.+++.
T Consensus 268 ~~ik~~ 273 (337)
T PRK13523 268 EHIREH 273 (337)
T ss_pred HHHHhh
Confidence 555554
No 405
>PLN02803 beta-amylase
Probab=48.69 E-value=40 Score=32.98 Aligned_cols=68 Identities=19% Similarity=0.237 Sum_probs=45.6
Q ss_pred hCCceecCccHHHHHH----HhCCchHHHHHHHHHHcCCCEEEecC--------CcccCChhHHHHHHHHHHHCCCeEcc
Q 030024 81 QHDVYVSTGDWAEHLI----RNGPSAFKEYVEDCKQVGFDTIELNV--------GSLEIPEETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 81 ~~gV~v~~GtlfE~al----~qg~~~~~~yl~~~k~lGF~~IEISd--------Gti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (184)
..+|+||-+--++.+- ..+++.+...|+.+|.+|++.|+|.- |--.-+=.--.+|.+++++.|||+.+
T Consensus 83 ~~~vpvyVMlPLd~V~~~~~~~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~ 162 (548)
T PLN02803 83 DSGVPVFVMLPLDTVTMGGNLNKPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKLQV 162 (548)
T ss_pred CCceeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEE
Confidence 4456666543333321 23345688899999999999998753 33333445567889999999999866
No 406
>PRK08392 hypothetical protein; Provisional
Probab=48.62 E-value=64 Score=26.71 Aligned_cols=56 Identities=5% Similarity=0.109 Sum_probs=33.6
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHH---HHHHHHHHH-CCCeEc--cccccccCC
Q 030024 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETL---LRYVRLVKS-AGLKAK--PKFAVMFNK 156 (184)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r---~~lI~~~~~-~Gf~v~--~EvG~K~~~ 156 (184)
..+++|++.+.+.||+.|=|||=+--...++. .+-|+++++ .+++++ -|++...+.
T Consensus 14 ~~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i~il~GiE~~~~~~~ 75 (215)
T PRK08392 14 GSVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGEESEIVVLAGIEANITPNG 75 (215)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhhccCceEEEeEEeeecCCc
Confidence 36888888888999998888877633222222 223333333 366665 566665543
No 407
>PRK09389 (R)-citramalate synthase; Provisional
Probab=48.59 E-value=31 Score=32.77 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCe
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (184)
.--++.+.+.++||+.||+ |+-..+++++ +.++.+.+.++.
T Consensus 25 ~K~~ia~~L~~~Gv~~IE~--G~p~~~~~d~-e~v~~i~~~~~~ 65 (488)
T PRK09389 25 EKLEIARKLDELGVDVIEA--GSAITSEGER-EAIKAVTDEGLN 65 (488)
T ss_pred HHHHHHHHHHHcCCCEEEE--eCCcCCHHHH-HHHHHHHhcCCC
Confidence 4456777788899999998 4555666666 667777766653
No 408
>cd01303 GDEase Guanine deaminase (GDEase). Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool.
Probab=48.56 E-value=1.8e+02 Score=26.55 Aligned_cols=121 Identities=14% Similarity=0.133 Sum_probs=63.2
Q ss_pred HHHHHHhhcccccEEEeeCc--cccccChhHHHHHHHHHHhCC-ceecC---ccHHHHHHHhCC-chHHHHHHHHHHcCC
Q 030024 43 LEDIFESMGQFVDGLKFSGG--SHSLMPKPFIEEVVKRAHQHD-VYVST---GDWAEHLIRNGP-SAFKEYVEDCKQVGF 115 (184)
Q Consensus 43 leDlLe~ag~yID~lKfg~G--Ts~l~p~~~L~eKI~l~~~~g-V~v~~---GtlfE~al~qg~-~~~~~yl~~~k~lGF 115 (184)
.+++++.+...-+.+..+.+ ...-.+.+.+++-.++++++| +++.. .+.-|....+.. ......++++.++|+
T Consensus 179 ~~~~i~~~~~~~~~v~~~~~p~~~~~~s~e~l~~~~~~A~~~g~~~v~~H~~e~~~e~~~~~~~~g~~~~p~~~l~~~G~ 258 (429)
T cd01303 179 TKRLIERWHGKSGRVKPAITPRFAPSCSEELLAALGKLAKEHPDLHIQTHISENLDEIAWVKELFPGARDYLDVYDKYGL 258 (429)
T ss_pred HHHHHHHHhCcCCceEEEEecCcCCcCCHHHHHHHHHHHHHCCCCeEEEeeCCCHHHHHHHHHHcCCCCCHHHHHHHCCC
Confidence 34555543221234555543 233446778999999999999 87765 355554333210 012345666777776
Q ss_pred C--EEEecCCcccCChhHHHHHHHHHHHCCCeE--ccccccccCCCCCCchhhhhcc
Q 030024 116 D--TIELNVGSLEIPEETLLRYVRLVKSAGLKA--KPKFAVMFNKSDIPSDRDRAFG 168 (184)
Q Consensus 116 ~--~IEISdGti~i~~~~r~~lI~~~~~~Gf~v--~~EvG~K~~~~~~~~~~~~a~g 168 (184)
- .+=++-++ .+++++ ++++++.|..| .|..+.+.+..-.++....+.|
T Consensus 259 l~~~~~l~H~~-~l~~~~----~~~l~~~g~~v~~~P~sn~~l~~g~~~~~~~~~~G 310 (429)
T cd01303 259 LTEKTVLAHCV-HLSEEE----FNLLKERGASVAHCPTSNLFLGSGLFDVRKLLDAG 310 (429)
T ss_pred CCCCcEEEeCC-CCCHHH----HHHHHHcCCEEEECccchhhhccCCCCHHHHHHCC
Confidence 2 12233332 455544 56667777764 4554444443333444444443
No 409
>PLN00197 beta-amylase; Provisional
Probab=48.51 E-value=41 Score=33.12 Aligned_cols=69 Identities=19% Similarity=0.133 Sum_probs=48.2
Q ss_pred hCCceecCccHHHHHH----HhCCchHHHHHHHHHHcCCCEEEecC--------CcccCChhHHHHHHHHHHHCCCeEcc
Q 030024 81 QHDVYVSTGDWAEHLI----RNGPSAFKEYVEDCKQVGFDTIELNV--------GSLEIPEETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 81 ~~gV~v~~GtlfE~al----~qg~~~~~~yl~~~k~lGF~~IEISd--------Gti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (184)
..+|+||-+--++.+- .+++..+...|+.+|.+|++.|+|.- |--.-+=.--.+|.+++++.|||+.+
T Consensus 103 ~~~vpvyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKlq~ 182 (573)
T PLN00197 103 GKGVPVYVMMPLDSVTMGNTVNRRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRHGLKVQA 182 (573)
T ss_pred CCCeeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEE
Confidence 3467777543333321 23344799999999999999999853 33334555668999999999999966
Q ss_pred c
Q 030024 149 K 149 (184)
Q Consensus 149 E 149 (184)
=
T Consensus 183 V 183 (573)
T PLN00197 183 V 183 (573)
T ss_pred E
Confidence 3
No 410
>PRK10992 iron-sulfur cluster repair di-iron protein; Provisional
Probab=48.40 E-value=54 Score=27.93 Aligned_cols=59 Identities=12% Similarity=0.058 Sum_probs=43.2
Q ss_pred HHHHHHhCCceecCc---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHH
Q 030024 75 VVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYV 136 (184)
Q Consensus 75 KI~l~~~~gV~v~~G---tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI 136 (184)
-.++.++|||.+|.| ++.|+|-.+| =..+.+++++.++--..- +...-+.|.+....+|
T Consensus 18 ~~~vf~~~~idfCcgG~~~l~ea~~~~~-i~~~~~~~~l~~~~~~~~--~~~~~~~~~~~LidyI 79 (220)
T PRK10992 18 ATALFREYDLDFCCGGKQTLARAAARKN-LDIDVIEARLAALQEQPI--EKDWRSAPLAELIDHI 79 (220)
T ss_pred HHHHHHHcCCcccCCCCchHHHHHHHcC-CCHHHHHHHHHHHHhccc--cCChhhCCHHHHHHHH
Confidence 356889999999985 4888887776 348899999888753332 3445567777777777
No 411
>PRK07328 histidinol-phosphatase; Provisional
Probab=48.27 E-value=21 Score=30.54 Aligned_cols=75 Identities=15% Similarity=0.179 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHhCCc--eecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChh--HHHHHHHHHHHCCCe
Q 030024 70 PFIEEVVKRAHQHDV--YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEE--TLLRYVRLVKSAGLK 145 (184)
Q Consensus 70 ~~L~eKI~l~~~~gV--~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~--~r~~lI~~~~~~Gf~ 145 (184)
+.+++-++.+.++|+ .+.+++|---.-..- --.++++.|+++|.. |=|+...-....= ...+..+.+++.||+
T Consensus 177 ~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~y--p~~~il~~~~~~g~~-itigSDAH~~~~vg~~~~~a~~~l~~~G~~ 253 (269)
T PRK07328 177 ELYEEALDVIAAAGLALEVNTAGLRKPVGEIY--PSPALLRACRERGIP-VVLGSDAHRPEEVGFGFAEALALLKEVGYT 253 (269)
T ss_pred HHHHHHHHHHHHcCCEEEEEchhhcCCCCCCC--CCHHHHHHHHHcCCC-EEEeCCCCCHHHHhccHHHHHHHHHHcCCc
Confidence 456888889999998 445554421100011 235788999999987 4555444433222 345577888888887
Q ss_pred Ec
Q 030024 146 AK 147 (184)
Q Consensus 146 v~ 147 (184)
-.
T Consensus 254 ~~ 255 (269)
T PRK07328 254 ET 255 (269)
T ss_pred EE
Confidence 43
No 412
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=48.19 E-value=84 Score=28.38 Aligned_cols=112 Identities=18% Similarity=0.239 Sum_probs=73.7
Q ss_pred chhHHHHHHHhhccc--ccEEEeeCccccccC--hhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcC
Q 030024 39 SHNVLEDIFESMGQF--VDGLKFSGGSHSLMP--KPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVG 114 (184)
Q Consensus 39 g~~~leDlLe~ag~y--ID~lKfg~GTs~l~p--~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lG 114 (184)
.++.++.+|+.|-+- ==+|.++-|+...+. .....-...++++++|+|+.= +-+| .=.+++..|-+.|
T Consensus 27 nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lH------lDHg--~~~~~~~~ai~~G 98 (286)
T COG0191 27 NLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALH------LDHG--ASFEDCKQAIRAG 98 (286)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEE------CCCC--CCHHHHHHHHhcC
Confidence 667777777765421 125677777776666 344444557888889988851 0111 1234455577899
Q ss_pred CCEEEecCCcccCChh--HHHHHHHHHHHCCCeEccccccccCCCC
Q 030024 115 FDTIELNVGSLEIPEE--TLLRYVRLVKSAGLKAKPKFAVMFNKSD 158 (184)
Q Consensus 115 F~~IEISdGti~i~~~--~r~~lI~~~~~~Gf~v~~EvG~K~~~~~ 158 (184)
|+.|=+.--..++.+- .=.++++++...|.-|-.|+|.=-+..|
T Consensus 99 FsSvMiDgS~~~~eENi~~tkevv~~ah~~gvsVEaElG~~GG~Ed 144 (286)
T COG0191 99 FSSVMIDGSHLPFEENIAITKEVVEFAHAYGVSVEAELGTLGGEED 144 (286)
T ss_pred CceEEecCCcCCHHHHHHHHHHHHHHHHHcCCcEEEEeccccCccC
Confidence 9999886555554433 3347899999999999999998755544
No 413
>PLN02801 beta-amylase
Probab=48.15 E-value=41 Score=32.72 Aligned_cols=49 Identities=22% Similarity=0.362 Sum_probs=34.7
Q ss_pred CchHHHHHHHHHHcCCCEEEecC--Ccc------cCChhHHHHHHHHHHHCCCeEcc
Q 030024 100 PSAFKEYVEDCKQVGFDTIELNV--GSL------EIPEETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISd--Gti------~i~~~~r~~lI~~~~~~Gf~v~~ 148 (184)
+..+..-|..+|.+|++.|+|.- |-+ .-+=.--.++.+++++.|||+.+
T Consensus 36 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq~ 92 (517)
T PLN02801 36 EEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFGLKIQA 92 (517)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEE
Confidence 34688888888888888888753 222 33445556788888888888855
No 414
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=48.13 E-value=1.3e+02 Score=24.37 Aligned_cols=90 Identities=13% Similarity=0.093 Sum_probs=58.1
Q ss_pred hcccccEEEeeCccc---cccChhHHHHHHHHHHhCCceecCcc--HH-----HHHHHhCCchHHHHHHHHHHcCCC---
Q 030024 50 MGQFVDGLKFSGGSH---SLMPKPFIEEVVKRAHQHDVYVSTGD--WA-----EHLIRNGPSAFKEYVEDCKQVGFD--- 116 (184)
Q Consensus 50 ag~yID~lKfg~GTs---~l~p~~~L~eKI~l~~~~gV~v~~Gt--lf-----E~al~qg~~~~~~yl~~~k~lGF~--- 116 (184)
+|-=.=+||.+-|+. .+-|. ...-++-|+++|+.+ |. |+ +-+.. ..+.|++.++..+.+
T Consensus 21 ~g~~fviiKateG~~g~~~~D~~--~~~~~~~A~~aGl~~--G~YHf~~~~~~~~a~~----qA~~f~~~~~~~~~~~~~ 92 (191)
T cd06414 21 SGVDFAIIRAGYGGYGELQEDKY--FEENIKGAKAAGIPV--GVYFYSYAVTVAEARE----EAEFVLRLIKGYKLSYPV 92 (191)
T ss_pred CCCCEEEEEEecCCCcccccCHH--HHHHHHHHHHCCCce--EEEEEEEeCCHHHHHH----HHHHHHHHhhccCCCCCe
Confidence 343445899999998 66665 999999999999854 42 11 12222 578899998887654
Q ss_pred EEEecCCcc---cCChhHH----HHHHHHHHHCCCeEc
Q 030024 117 TIELNVGSL---EIPEETL----LRYVRLVKSAGLKAK 147 (184)
Q Consensus 117 ~IEISdGti---~i~~~~r----~~lI~~~~~~Gf~v~ 147 (184)
++.+-+... .++..+. .++++++++.|.++.
T Consensus 93 ~lD~E~~~~~~~~~~~~~~~~~~~~f~~~v~~~G~~~~ 130 (191)
T cd06414 93 YYDLEDETQLGAGLSKDQRTDIANAFCETIEAAGYYPG 130 (191)
T ss_pred EEEeecCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeE
Confidence 344433221 1344333 566778888888764
No 415
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=48.09 E-value=33 Score=36.19 Aligned_cols=50 Identities=22% Similarity=0.406 Sum_probs=37.6
Q ss_pred HHHhCCchHHHHHHHHHHcCCCEEEecC-CcccCChhHHHHHHHHHHHCCCeEcc
Q 030024 95 LIRNGPSAFKEYVEDCKQVGFDTIELNV-GSLEIPEETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 95 al~qg~~~~~~yl~~~k~lGF~~IEISd-Gti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (184)
.+..|..+++++++.|+++|+++|=|+| +++ .--.+..+.+++.|++++.
T Consensus 12 SlLdg~~~i~elv~~A~e~G~~avAiTDH~~l----~g~~~f~~~a~~~gIkpIi 62 (1135)
T PRK05673 12 SLLDGAAKIKPLVKKAAELGMPAVALTDHGNL----FGAVEFYKAAKGAGIKPII 62 (1135)
T ss_pred chhhhcCCHHHHHHHHHHcCCCEEEEEcCCcc----HHHHHHHHHHHHcCCeEEE
Confidence 3446666899999999999999999998 444 2334667788888988864
No 416
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=48.06 E-value=2e+02 Score=25.57 Aligned_cols=80 Identities=14% Similarity=0.166 Sum_probs=50.5
Q ss_pred hhHHHHHHHhhcccccEEEeeCcccc------ccChhHHHHHHHHHHhC------Cce----ecCccHHHHHHHhCCchH
Q 030024 40 HNVLEDIFESMGQFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQH------DVY----VSTGDWAEHLIRNGPSAF 103 (184)
Q Consensus 40 ~~~leDlLe~ag~yID~lKfg~GTs~------l~p~~~L~eKI~l~~~~------gV~----v~~GtlfE~al~qg~~~~ 103 (184)
...+.++++.++++.|++=+-+++-. ....+.+.+.++..++. +++ +.++ +- . +.+
T Consensus 147 ~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~-~~-----~--~~~ 218 (327)
T cd04738 147 VEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPD-LS-----D--EEL 218 (327)
T ss_pred HHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCC-CC-----H--HHH
Confidence 34566666777778888888765443 33345566666665542 133 3333 11 1 145
Q ss_pred HHHHHHHHHcCCCEEEecCCcccC
Q 030024 104 KEYVEDCKQVGFDTIELNVGSLEI 127 (184)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i 127 (184)
.+..+.|.+.|.|.|.+++.+..+
T Consensus 219 ~~ia~~l~~aGad~I~~~n~~~~~ 242 (327)
T cd04738 219 EDIADVALEHGVDGIIATNTTISR 242 (327)
T ss_pred HHHHHHHHHcCCcEEEEECCcccc
Confidence 677778899999999999987654
No 417
>PRK09234 fbiC FO synthase; Reviewed
Probab=48.04 E-value=63 Score=33.07 Aligned_cols=113 Identities=15% Similarity=0.138 Sum_probs=68.7
Q ss_pred CCceeEec-CCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChh----------HHHHHHHHHHhCCceecCccHH
Q 030024 24 FGVTEMRS-PHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKP----------FIEEVVKRAHQHDVYVSTGDWA 92 (184)
Q Consensus 24 ~GlT~V~D-kG~s~~~g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~----------~L~eKI~l~~~~gV~v~~Gtlf 92 (184)
.|.|.|.= -|..+.-...++.++++..-...--+++= +..|-+ .+++.+..++++|+.-+|||..
T Consensus 572 ~G~tev~i~gG~~p~~~~~~y~~lir~IK~~~p~i~i~----afsp~Ei~~~a~~~Gl~~~e~l~~LkeAGLds~pgt~a 647 (843)
T PRK09234 572 AGATEVCMQGGIHPELPGTGYADLVRAVKARVPSMHVH----AFSPMEIVNGAARLGLSIREWLTALREAGLDTIPGTAA 647 (843)
T ss_pred CCCCEEEEecCCCCCcCHHHHHHHHHHHHHhCCCeeEE----ecChHHHHHHHHHcCCCHHHHHHHHHHhCcCccCCCch
Confidence 46665532 23322115556777777665443333331 111211 2578999999999999999888
Q ss_pred HHHHH---------hC-CchHHHHHHHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHHHCC
Q 030024 93 EHLIR---------NG-PSAFKEYVEDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVKSAG 143 (184)
Q Consensus 93 E~al~---------qg-~~~~~~yl~~~k~lGF~~IEISdGti---~i~~~~r~~lI~~~~~~G 143 (184)
|+.-. .- .+..-+-++.++++|+. ++.|.+ .-+.++|.+.+..+++..
T Consensus 648 eil~d~vr~~i~p~k~~~~~wle~i~~Ah~lGi~---~~stmm~G~~Et~edrv~hl~~LreLq 708 (843)
T PRK09234 648 EILDDEVRWVLTKGKLPTAEWIEVVTTAHEVGLR---SSSTMMYGHVDTPRHWVAHLRVLRDIQ 708 (843)
T ss_pred hhCCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCC---cccceEEcCCCCHHHHHHHHHHHHhcC
Confidence 87753 11 11223556677888876 555543 457888989888888886
No 418
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=47.99 E-value=18 Score=30.42 Aligned_cols=41 Identities=15% Similarity=0.312 Sum_probs=33.7
Q ss_pred CCceecC-c-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh
Q 030024 82 HDVYVST-G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE 129 (184)
Q Consensus 82 ~gV~v~~-G-tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~ 129 (184)
|+|.++- | |+...+|.++ |++|+++|++-|.|+-..-.++.
T Consensus 103 Y~VrPseR~KGYA~emLkl~-------L~~ar~lgi~~Vlvtcd~dN~AS 145 (174)
T COG3981 103 YSVRPSERRKGYAKEMLKLA-------LEKARELGIKKVLVTCDKDNIAS 145 (174)
T ss_pred ceeChhhhccCHHHHHHHHH-------HHHHHHcCCCeEEEEeCCCCchh
Confidence 5666666 7 8999998887 88999999999999877766654
No 419
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=47.97 E-value=1.3e+02 Score=25.18 Aligned_cols=82 Identities=15% Similarity=0.255 Sum_probs=45.5
Q ss_pred HHHHHHHHHhCCceecC--c-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeE--
Q 030024 72 IEEVVKRAHQHDVYVST--G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA-- 146 (184)
Q Consensus 72 L~eKI~l~~~~gV~v~~--G-tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v-- 146 (184)
+++.+++++++|+++.. + +-.|. +...+ +++.++|.+.++ = ...+++++ ++++++.|..+
T Consensus 127 l~~~~~~A~~~g~~v~~H~~e~~~~~----g~~~i----~~~~~~~~~~i~--H-~~~l~~~~----~~~la~~g~~v~~ 191 (263)
T cd01305 127 LEDILELLRRRGKLFAIHASETRESV----GMTDI----ERALDLEPDLLV--H-GTHLTDED----LELVRENGVPVVL 191 (263)
T ss_pred HHHHHHHHHHCCCeeEEecCCCCCCC----CchhH----HHHHhCCCCEEE--E-cCCCCHHH----HHHHHHcCCcEEE
Confidence 99999999999988775 3 33221 21123 333334666542 2 23355544 56666676665
Q ss_pred ccccccccCCCCCCchhhhhcc
Q 030024 147 KPKFAVMFNKSDIPSDRDRAFG 168 (184)
Q Consensus 147 ~~EvG~K~~~~~~~~~~~~a~g 168 (184)
.|..+.+.+....++..+.+.|
T Consensus 192 ~P~sn~~l~~g~~p~~~l~~~G 213 (263)
T cd01305 192 CPRSNLYFGVGIPPVAELLKLG 213 (263)
T ss_pred ChhhHHHhCCCCCCHHHHHHCC
Confidence 4554444444445555555554
No 420
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=47.94 E-value=38 Score=26.96 Aligned_cols=88 Identities=15% Similarity=0.219 Sum_probs=49.4
Q ss_pred HHHHHHHhhccc-ccEEEeeCccccccChhHHHHHHHHHHhCCc---eecCccHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 030024 42 VLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV---YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (184)
Q Consensus 42 ~leDlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV---~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~ 117 (184)
..+++++.+=++ .|++=++. ..-...+.+++-++.+++.|+ .+..||-.-+ .++.+++-.+.++++||+.
T Consensus 40 ~~e~~v~aa~~~~adiVglS~--l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi----~~~d~~~~~~~l~~~Gv~~ 113 (134)
T TIGR01501 40 PQEEFIKAAIETKADAILVSS--LYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVV----GKQDFPDVEKRFKEMGFDR 113 (134)
T ss_pred CHHHHHHHHHHcCCCEEEEec--ccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCc----ChhhhHHHHHHHHHcCCCE
Confidence 456666665543 45554433 112222347888888888864 4545542111 1123444556688899988
Q ss_pred EEecCCcccCChhHHHHHHHHH
Q 030024 118 IELNVGSLEIPEETLLRYVRLV 139 (184)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~ 139 (184)
| ++-|+ +.++-.++|++.
T Consensus 114 v-F~pgt---~~~~iv~~l~~~ 131 (134)
T TIGR01501 114 V-FAPGT---PPEVVIADLKKD 131 (134)
T ss_pred E-ECcCC---CHHHHHHHHHHH
Confidence 7 56665 556666666653
No 421
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=47.83 E-value=26 Score=34.65 Aligned_cols=57 Identities=18% Similarity=0.293 Sum_probs=43.8
Q ss_pred HHHHHHHHHhCCcee--cCcc--HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeE
Q 030024 72 IEEVVKRAHQHDVYV--STGD--WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 72 L~eKI~l~~~~gV~v--~~Gt--lfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (184)
|+|+.+-.|+-||+. |+|. +--.++++- --+|+|+.+|+ +|+|.++|++-++.|=-|
T Consensus 452 i~ERf~elR~MgIkTvM~TGDN~~TAa~IA~E-AGVDdfiAeat-----------------PEdK~~~I~~eQ~~grlV 512 (681)
T COG2216 452 IKERFAELRKMGIKTVMITGDNPLTAAAIAAE-AGVDDFIAEAT-----------------PEDKLALIRQEQAEGRLV 512 (681)
T ss_pred HHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHH-hCchhhhhcCC-----------------hHHHHHHHHHHHhcCcEE
Confidence 899999999999943 4683 444444332 25999999885 799999999999998554
No 422
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=47.81 E-value=49 Score=26.87 Aligned_cols=94 Identities=16% Similarity=0.150 Sum_probs=57.7
Q ss_pred hhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHH---HhCCchHHHHHHHHHHcCCC--E--EEec
Q 030024 49 SMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLI---RNGPSAFKEYVEDCKQVGFD--T--IELN 121 (184)
Q Consensus 49 ~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al---~qg~~~~~~yl~~~k~lGF~--~--IEIS 121 (184)
.+|-=.=+||-.-|+..+-|. ..+-++-|+++|+.+ |-.+-... ....+..+.|++..+..+.+ . +.|.
T Consensus 20 ~~g~~fv~ikateg~~~~D~~--f~~n~~~A~~aGl~~--G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~~~i~lDiE 95 (196)
T cd06416 20 NNGYSFAIIRAYRSNGSFDPN--SVTNIKNARAAGLST--DVYFFPCINCCGSAAGQVQTFLQYLKANGIKYGTVWIDIE 95 (196)
T ss_pred hCCceEEEEEEEccCCccChH--HHHHHHHHHHcCCcc--ceEEEecCCCCCCHHHHHHHHHHHHHhCCCceeEEEEEEe
Confidence 344445578888887776555 999999999999866 43211111 11223688899998885443 2 4444
Q ss_pred C--CcccCChhHH----HHHHHHHHHCCCeE
Q 030024 122 V--GSLEIPEETL----LRYVRLVKSAGLKA 146 (184)
Q Consensus 122 d--Gti~i~~~~r----~~lI~~~~~~Gf~v 146 (184)
. +....+.... .+++.++++.|.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~ 126 (196)
T cd06416 96 QNPCQWSSDVASNCQFLQELVSAAKALGLKV 126 (196)
T ss_pred cCCCCCcCCHHHHHHHHHHHHHHHHHhCCeE
Confidence 3 4444444433 35566667778877
No 423
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.78 E-value=71 Score=20.30 Aligned_cols=46 Identities=20% Similarity=0.387 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHcCCCEEEec---------CCc------ccCCh-hHHHHHHHHHHHCCCeEc
Q 030024 102 AFKEYVEDCKQVGFDTIELN---------VGS------LEIPE-ETLLRYVRLVKSAGLKAK 147 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEIS---------dGt------i~i~~-~~r~~lI~~~~~~Gf~v~ 147 (184)
.+.+.++.+.+.|.+...+. +|. ++.+. ++...+++.+++.|+++.
T Consensus 11 ~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 11 QLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred hHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 56666666667777666443 122 23333 667799999999999874
No 424
>PRK10060 RNase II stability modulator; Provisional
Probab=47.47 E-value=50 Score=31.94 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=29.5
Q ss_pred HHHcCCCEEEecCCccc-C-----ChhHHHHHHHHHHHCCCeEcccccccc
Q 030024 110 CKQVGFDTIELNVGSLE-I-----PEETLLRYVRLVKSAGLKAKPKFAVMF 154 (184)
Q Consensus 110 ~k~lGF~~IEISdGti~-i-----~~~~r~~lI~~~~~~Gf~v~~EvG~K~ 154 (184)
++++.+|.|-|+-.++. + ....-..+|..+++.|++|+.| |+..
T Consensus 572 L~~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viAe-GVEt 621 (663)
T PRK10060 572 LARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAE-GVET 621 (663)
T ss_pred HHhCCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEEe-cCCC
Confidence 44456777777765552 2 2233456789999999999988 5554
No 425
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=47.17 E-value=2.6e+02 Score=26.67 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=64.5
Q ss_pred ccEEEeeCccccccChhHHHHHHHHHHh-CCceecCcc----HHHHHHHhCC-----------chHHHHHHHHHHcCCCE
Q 030024 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQ-HDVYVSTGD----WAEHLIRNGP-----------SAFKEYVEDCKQVGFDT 117 (184)
Q Consensus 54 ID~lKfg~GTs~l~p~~~L~eKI~l~~~-~gV~v~~Gt----lfE~al~qg~-----------~~~~~yl~~~k~lGF~~ 117 (184)
.|+|=++.-+- ..+.+.+.|+..++ .+++++-.| -+|.++..+. +++++..+.|++.|...
T Consensus 128 AD~IaL~~~s~---dp~~v~~~Vk~V~~~~dvPLSIDT~dpevleaAleagad~~plI~Sat~dN~~~m~~la~~yg~pv 204 (450)
T PRK04165 128 LDMVALRNASG---DPEKFAKAVKKVAETTDLPLILCSEDPAVLKAALEVVADRKPLLYAATKENYEEMAELAKEYNCPL 204 (450)
T ss_pred CCEEEEeCCCC---CHHHHHHHHHHHHHhcCCCEEEeCCCHHHHHHHHHhcCCCCceEEecCcchHHHHHHHHHHcCCcE
Confidence 67777776554 45568889988887 699888743 7888886652 46788888899999999
Q ss_pred EEecCCcccCChhHHHHHHHHHHHCCC
Q 030024 118 IELNVGSLEIPEETLLRYVRLVKSAGL 144 (184)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~Gf 144 (184)
|=.++. .+...++++++.+.|+
T Consensus 205 Vv~~~d-----l~~L~~lv~~~~~~GI 226 (450)
T PRK04165 205 VVKAPN-----LEELKELVEKLQAAGI 226 (450)
T ss_pred EEEchh-----HHHHHHHHHHHHHcCC
Confidence 887764 5677789999999988
No 426
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=47.04 E-value=38 Score=30.29 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=35.1
Q ss_pred hHHHHHHHhhcccccEEEeeC--ccccccChhHHHHHHHHHHhCCceec
Q 030024 41 NVLEDIFESMGQFVDGLKFSG--GSHSLMPKPFIEEVVKRAHQHDVYVS 87 (184)
Q Consensus 41 ~~leDlLe~ag~yID~lKfg~--GTs~l~p~~~L~eKI~l~~~~gV~v~ 87 (184)
...+++++...+.++.+|+-+ +.+..++.+.+++.+++++++|+++.
T Consensus 142 ~~~~~~~~~~~~~~~g~ki~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~ 190 (379)
T PRK12394 142 NKIHALFRQYRNVLQGLKLRVQTEDIAEYGLKPLTETLRIANDLRCPVA 190 (379)
T ss_pred HHHHHHHHHCcCcEEEEEEEEecccccccchHHHHHHHHHHHHcCCCEE
Confidence 466667766666677777664 44446778899999999999997664
No 427
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=46.91 E-value=61 Score=27.38 Aligned_cols=61 Identities=18% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHhC---------CceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHH
Q 030024 72 IEEVVKRAHQH---------DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLV 139 (184)
Q Consensus 72 L~eKI~l~~~~---------gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~ 139 (184)
+++.++.+.+. ||.++.| |-.++.. -+.++++.||+.|+...=.++|+. +.+...+++..+
T Consensus 21 ~eel~~~~~~~~~f~~~sggGVt~SGG---EPllq~~--fl~~l~~~~k~~gi~~~leTnG~~--~~~~~~~l~~~~ 90 (213)
T PRK10076 21 LDALEREVMKDDIFFRTSGGGVTLSGG---EVLMQAE--FATRFLQRLRLWGVSCAIETAGDA--PASKLLPLAKLC 90 (213)
T ss_pred HHHHHHHHHhhhHhhcCCCCEEEEeCc---hHHcCHH--HHHHHHHHHHHcCCCEEEECCCCC--CHHHHHHHHHhc
No 428
>PLN02784 alpha-amylase
Probab=46.81 E-value=49 Score=34.24 Aligned_cols=55 Identities=15% Similarity=0.202 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc----------c---C-----ChhHHHHHHHHHHHCCCeEccccccccCC
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGSL----------E---I-----PEETLLRYVRLVKSAGLKAKPKFAVMFNK 156 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti----------~---i-----~~~~r~~lI~~~~~~Gf~v~~EvG~K~~~ 156 (184)
.+.+-+++++++||++|.|+--+- + | +.++..++|+.+.++|++|+..+=..+..
T Consensus 522 ~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~a 594 (894)
T PLN02784 522 ELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRC 594 (894)
T ss_pred HHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECccccc
Confidence 577778999999999999975322 1 1 35789999999999999998776555543
No 429
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=46.68 E-value=18 Score=32.53 Aligned_cols=29 Identities=14% Similarity=0.212 Sum_probs=25.6
Q ss_pred ccCChhHHHHHHHHHHHCCCeEccccccc
Q 030024 125 LEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (184)
Q Consensus 125 i~i~~~~r~~lI~~~~~~Gf~v~~EvG~K 153 (184)
--.+.++..++|+.|+++|..|+||+-.-
T Consensus 65 ~~YT~~di~eiv~yA~~rgI~vIPEID~P 93 (348)
T cd06562 65 EVYTPEDVKEIVEYARLRGIRVIPEIDTP 93 (348)
T ss_pred ceECHHHHHHHHHHHHHcCCEEEEeccCc
Confidence 34689999999999999999999999654
No 430
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=46.57 E-value=29 Score=30.87 Aligned_cols=63 Identities=17% Similarity=0.060 Sum_probs=40.5
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhc-c--cccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHH
Q 030024 24 FGVTEMRSPHYTLSSSHNVLEDIFESMG-Q--FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLI 96 (184)
Q Consensus 24 ~GlT~V~DkG~s~~~g~~~leDlLe~ag-~--yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al 96 (184)
.++....|=- +. ++..++++++.-+ + =+|..|.|+ +. ..++-+++|+.|||.+++|..+|..+
T Consensus 238 ~~~pia~dE~--~~-~~~~~~~~i~~~~~d~~~~d~~~~GG----it---~~~~~~~~a~~~gi~~~~~~~~~s~i 303 (365)
T cd03318 238 NRVPIMADES--VS-GPADAFELARRGAADVFSLKIAKSGG----LR---RAQKVAAIAEAAGIALYGGTMLESSI 303 (365)
T ss_pred cCCCEEcCcc--cC-CHHHHHHHHHhCCCCeEEEeecccCC----HH---HHHHHHHHHHHcCCceeecCcchhHH
Confidence 4555666543 34 6778888887532 1 234444454 32 27888999999999999886546544
No 431
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=46.38 E-value=76 Score=27.51 Aligned_cols=50 Identities=20% Similarity=0.408 Sum_probs=32.0
Q ss_pred HHHHHHHHHhC-CceecC--ccH-----HHHHHHhCCc----hHHHHHHHHHHcCCCEEEecC
Q 030024 72 IEEVVKRAHQH-DVYVST--GDW-----AEHLIRNGPS----AFKEYVEDCKQVGFDTIELNV 122 (184)
Q Consensus 72 L~eKI~l~~~~-gV~v~~--Gtl-----fE~al~qg~~----~~~~yl~~~k~lGF~~IEISd 122 (184)
+++..++.+++ ++++.+ |+| |..++. ++. -++..++.+++.|||.|.|.=
T Consensus 54 ~~~~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~-~~~~r~~fi~~i~~~~~~~~~DGidiDw 115 (334)
T smart00636 54 FGQLKALKKKNPGLKVLLSIGGWTESDNFSSMLS-DPASRKKFIDSIVSFLKKYGFDGIDIDW 115 (334)
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCCCCcchhHHHC-CHHHHHHHHHHHHHHHHHcCCCeEEECC
Confidence 45555555554 887776 653 344332 111 356777888999999999963
No 432
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.35 E-value=42 Score=22.13 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHCCCeE
Q 030024 130 ETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 130 ~~r~~lI~~~~~~Gf~v 146 (184)
++..++++.++++|++|
T Consensus 53 ~~~~~~~~~L~~~G~~v 69 (69)
T cd04909 53 EDRERAKEILKEAGYEV 69 (69)
T ss_pred HHHHHHHHHHHHcCCcC
Confidence 46678999999999865
No 433
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=46.33 E-value=98 Score=29.63 Aligned_cols=93 Identities=13% Similarity=0.112 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHhCCceec---C--c---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-------CChhHHHH
Q 030024 70 PFIEEVVKRAHQHDVYVS---T--G---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-------IPEETLLR 134 (184)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~---~--G---tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~-------i~~~~r~~ 134 (184)
+.++..++++|++++.|. . | +=++... +--+....+++...++||+..=+..|--- ...++-+.
T Consensus 193 ~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~-~Ai~dAr~vfd~g~e~Gf~m~~LdiGGGf~g~~~~~~~fe~i~~ 271 (448)
T KOG0622|consen 193 DNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYR-DAISDARNVFDMGAELGFEMDILDIGGGFPGDEGHAVVFEEIAD 271 (448)
T ss_pred HHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHH-HHHHHHHHHHHHHHhcCceEEEeecCCCCCCccchhhhhhhHHH
Confidence 359999999999999764 2 4 3344333 21235788999999999997666655431 34567788
Q ss_pred HHHHHHHC-----CCeEccccccccCCCCCCchh
Q 030024 135 YVRLVKSA-----GLKAKPKFAVMFNKSDIPSDR 163 (184)
Q Consensus 135 lI~~~~~~-----Gf~v~~EvG~K~~~~~~~~~~ 163 (184)
+|+-+.+. |...+.|.|+=+-++++.+.-
T Consensus 272 ~In~ald~~Fp~~~v~iiaEpGRf~VasafTLa~ 305 (448)
T KOG0622|consen 272 VINTALDLYFPSGGVDIIAEPGRFFVASAFTLAV 305 (448)
T ss_pred HHHHHHHHhCCCCCceEEeccchheeechheeee
Confidence 88888765 677799999888777665543
No 434
>PRK11440 putative hydrolase; Provisional
Probab=46.32 E-value=65 Score=25.86 Aligned_cols=78 Identities=9% Similarity=0.078 Sum_probs=57.0
Q ss_pred cccccEEEeeCccccccChhHHHHHHHHHHhCCc-eec-CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC
Q 030024 51 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVS-TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP 128 (184)
Q Consensus 51 g~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~-~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~ 128 (184)
++++ +-|-.++. ++..+ |.+ +++++|| .+. .|-..+.|+.+- ...+.++||+.+=++|++-+.+
T Consensus 95 ~d~v-i~K~~~sa--F~~T~-L~~---~L~~~gi~~lii~Gv~T~~CV~~T-------a~~A~~~gy~v~vv~Da~as~~ 160 (188)
T PRK11440 95 SDIE-VTKRQWGA--FYGTD-LEL---QLRRRGIDTIVLCGISTNIGVEST-------ARNAWELGFNLVIAEDACSAAS 160 (188)
T ss_pred CCEE-EecCCcCC--CCCCC-HHH---HHHHCCCCEEEEeeechhHHHHHH-------HHHHHHCCCEEEEechhhcCCC
Confidence 3443 66876654 44433 444 4578999 333 488999999884 2558899999999999999999
Q ss_pred hhHHHHHHHHHHHC
Q 030024 129 EETLLRYVRLVKSA 142 (184)
Q Consensus 129 ~~~r~~lI~~~~~~ 142 (184)
.+.....++.+...
T Consensus 161 ~~~h~~al~~~~~~ 174 (188)
T PRK11440 161 AEQHQNSMNHIFPR 174 (188)
T ss_pred HHHHHHHHHHHHhh
Confidence 99988888877543
No 435
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=46.19 E-value=51 Score=30.70 Aligned_cols=82 Identities=24% Similarity=0.421 Sum_probs=54.4
Q ss_pred cccccEEEeeCcccc------ccC-hhHHHHHHHHHHhCCceecCc---c-HHHHHHHh-CC------chHHHHHHHHHH
Q 030024 51 GQFVDGLKFSGGSHS------LMP-KPFIEEVVKRAHQHDVYVSTG---D-WAEHLIRN-GP------SAFKEYVEDCKQ 112 (184)
Q Consensus 51 g~yID~lKfg~GTs~------l~p-~~~L~eKI~l~~~~gV~v~~G---t-lfE~al~q-g~------~~~~~yl~~~k~ 112 (184)
.+++|-+-+-=|.-. +-+ ++.+++.++.|+++||++--| | |=+..+.+ ++ .+.-++++.|.+
T Consensus 92 ~~~v~kiRINPGNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~~~~~~ky~~t~~amvesA~~~~~~le~ 171 (359)
T PF04551_consen 92 IEAVDKIRINPGNIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGVNSGSLEKDILEKYGPTPEAMVESALEHVRILEE 171 (359)
T ss_dssp HHC-SEEEE-TTTSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-HHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCeEEECCCcccccccccccchHHHHHHHHHHHHHCCCCEEEecccccCcHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 344999999888852 244 788999999999999988765 3 33322221 11 156789999999
Q ss_pred cCCCEEEecCCcccCChhHH
Q 030024 113 VGFDTIELNVGSLEIPEETL 132 (184)
Q Consensus 113 lGF~~IEISdGti~i~~~~r 132 (184)
+||+-|=||-=+-+++.--+
T Consensus 172 ~~f~~iviSlKsSdv~~~i~ 191 (359)
T PF04551_consen 172 LGFDDIVISLKSSDVPETIE 191 (359)
T ss_dssp CT-GGEEEEEEBSSHHHHHH
T ss_pred CCCCcEEEEEEeCChHHHHH
Confidence 99999999977766655433
No 436
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=46.04 E-value=60 Score=26.60 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=38.6
Q ss_pred CceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccc
Q 030024 83 DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFA 151 (184)
Q Consensus 83 gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG 151 (184)
+|++-.+++ . .-+..++.|.+.|.+.|=+..- .++.++-.++++.++..|+.+..++.
T Consensus 72 ~iPi~~~~~-------i--~~~~~v~~~~~~Gad~v~l~~~--~~~~~~~~~~~~~~~~~g~~~~v~v~ 129 (217)
T cd00331 72 SLPVLRKDF-------I--IDPYQIYEARAAGADAVLLIVA--ALDDEQLKELYELARELGMEVLVEVH 129 (217)
T ss_pred CCCEEECCe-------e--cCHHHHHHHHHcCCCEEEEeec--cCCHHHHHHHHHHHHHcCCeEEEEEC
Confidence 677776541 1 1123677888888888887443 34556667888888888888776663
No 437
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=46.01 E-value=1.4e+02 Score=26.63 Aligned_cols=70 Identities=23% Similarity=0.185 Sum_probs=49.6
Q ss_pred hHHHHHHHhhcccccEEEeeCccccccChh--HHHHHHHHHHhCCc-eecCc--c-HHHHHHHhCCchHHHHHHHHHHcC
Q 030024 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKP--FIEEVVKRAHQHDV-YVSTG--D-WAEHLIRNGPSAFKEYVEDCKQVG 114 (184)
Q Consensus 41 ~~leDlLe~ag~yID~lKfg~GTs~l~p~~--~L~eKI~l~~~~gV-~v~~G--t-lfE~al~qg~~~~~~yl~~~k~lG 114 (184)
+.++...+.+| |=+|-=-|-+.|++.. .+++-++..++++| .+||+ | +-+.++.+ +.++
T Consensus 181 niv~~~~~~~g---~rv~~ViGGFHL~~~~~~~l~~~~~~l~el~v~~i~pcHCTg~~a~~~l~------------~~~~ 245 (259)
T COG1237 181 NIVEWAKERSG---DRVKAVIGGFHLIGASEERLEEVADYLKELGVEKIYPCHCTGEKAKRYLR------------RVFG 245 (259)
T ss_pred HHHHHHHHhcc---ceeEEEeeeeccCCCcHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHH------------HHcC
Confidence 56677788888 5556555666666654 68899999999999 89997 4 54444433 3567
Q ss_pred CCEEEecCCcc
Q 030024 115 FDTIELNVGSL 125 (184)
Q Consensus 115 F~~IEISdGti 125 (184)
...+++..|++
T Consensus 246 ~~~~~v~~G~~ 256 (259)
T COG1237 246 EKYEEVGVGTE 256 (259)
T ss_pred cceeeccCceE
Confidence 77778777764
No 438
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=45.87 E-value=54 Score=25.79 Aligned_cols=59 Identities=14% Similarity=0.021 Sum_probs=42.6
Q ss_pred HHHHhCCceec-CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCe
Q 030024 77 KRAHQHDVYVS-TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (184)
Q Consensus 77 ~l~~~~gV~v~-~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (184)
-+++++|..|. .|. +- ..+++++.+.+.+.+.|=+|.-...-- ..-.++++++++.|+.
T Consensus 25 ~~lr~~G~eVi~LG~-------~v--p~e~i~~~a~~~~~d~V~lS~~~~~~~-~~~~~~~~~L~~~~~~ 84 (137)
T PRK02261 25 RALTEAGFEVINLGV-------MT--SQEEFIDAAIETDADAILVSSLYGHGE-IDCRGLREKCIEAGLG 84 (137)
T ss_pred HHHHHCCCEEEECCC-------CC--CHHHHHHHHHHcCCCEEEEcCccccCH-HHHHHHHHHHHhcCCC
Confidence 46677888554 352 11 578888889999999999998666433 3445889999999774
No 439
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=45.37 E-value=1.2e+02 Score=24.08 Aligned_cols=113 Identities=14% Similarity=0.137 Sum_probs=69.5
Q ss_pred CCCceeEecCCCCCCcchhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecC---cc--------H
Q 030024 23 RFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST---GD--------W 91 (184)
Q Consensus 23 ~~GlT~V~DkG~s~~~g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~---Gt--------l 91 (184)
..|++.+.+++.++. ..++.-++..-+--|.+=+-.+...+.+.+.|++.++.++.++.-+.| || +
T Consensus 63 ~~~v~~i~~~~~G~~---~si~~al~~~~~~~~~vlv~~~D~P~l~~~~i~~l~~~~~~~~~vi~p~~~GG~p~l~~~~~ 139 (195)
T TIGR03552 63 NLGAPVLRDPGPGLN---NALNAALAEAREPGGAVLILMADLPLLTPRELKRLLAAATEGDVVIAPDRGGGTNALFLRPP 139 (195)
T ss_pred hcCCEEEecCCCCHH---HHHHHHHHHhhccCCeEEEEeCCCCCCCHHHHHHHHHhcccCCEEEEecCCCCeeEEEECCC
Confidence 347888888774222 233333332211124566777888888899999999988766654443 43 1
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHH
Q 030024 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRL 138 (184)
Q Consensus 92 fE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~ 138 (184)
++.....+.+++.+-+..+.+.+...+++.+-.+.++-|+...|-+.
T Consensus 140 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DiDtp~Dl~~~ 186 (195)
T TIGR03552 140 SALRPAFGGDSFLRHRRSAAKRGLRVRIYDSFGLALDVDTPEDLAEA 186 (195)
T ss_pred CccCCCcCchHHHHHHHHHHHcCCceEeecCCceeecCCCHHHHHHH
Confidence 11222334456777788888899999999987655555555555554
No 440
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=45.20 E-value=52 Score=29.82 Aligned_cols=19 Identities=11% Similarity=0.144 Sum_probs=11.8
Q ss_pred ChhHHHHHHHHHHhCCcee
Q 030024 68 PKPFIEEVVKRAHQHDVYV 86 (184)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v 86 (184)
..+.+++-++++|++|++|
T Consensus 212 ~~e~i~~~v~~A~~~g~~v 230 (383)
T PRK15446 212 APPNRRAIAALARARGIPL 230 (383)
T ss_pred CHHHHHHHHHHHHHCCCce
Confidence 3445666666666666666
No 441
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=45.06 E-value=36 Score=29.52 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHcC-CCEEEecCCccc---------CChhHHHHHHHHHHHC
Q 030024 102 AFKEYVEDCKQVG-FDTIELNVGSLE---------IPEETLLRYVRLVKSA 142 (184)
Q Consensus 102 ~~~~yl~~~k~lG-F~~IEISdGti~---------i~~~~r~~lI~~~~~~ 142 (184)
.+.+..+.+++.| ||.|||+-++-. -..+.-.++|+.+++.
T Consensus 105 ~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~ 155 (301)
T PRK07259 105 EYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEV 155 (301)
T ss_pred HHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh
Confidence 4445555566777 888888543322 2335556777777766
No 442
>PRK09059 dihydroorotase; Validated
Probab=45.00 E-value=2.5e+02 Score=25.84 Aligned_cols=127 Identities=14% Similarity=0.095 Sum_probs=71.0
Q ss_pred CCCCceeEecCCCC--CCcchhHHHHHHHhhc--ccccEEEeeCccccccChhHHHHHHHHHHhCCceecC-ccHHHHHH
Q 030024 22 RRFGVTEMRSPHYT--LSSSHNVLEDIFESMG--QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLI 96 (184)
Q Consensus 22 R~~GlT~V~DkG~s--~~~g~~~leDlLe~ag--~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~-GtlfE~al 96 (184)
...|+|-+++-.-+ ...+...++.+++.+. .++|+.=.|.-|.-..+ +.+.+. ..+.+.||..+. +++ .
T Consensus 88 ~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~-~~l~e~-~~l~~~Gv~~f~~~~~---~- 161 (429)
T PRK09059 88 AAGGVTSIIMMPDTDPVIDDVALVEFVKRTARDTAIVNIHPAAAITKGLAG-EEMTEF-GLLRAAGAVAFTDGRR---S- 161 (429)
T ss_pred HhCCcEEEEeccCCCCCCCCHHHHHHHHHHhcccCcccEEEEeEEecCCCC-cchHHH-HHHHhcCcEEEecCCc---c-
Confidence 45599999885422 2235667788887764 37887654432222222 234443 334577887665 220 0
Q ss_pred HhCCchHHHHHHHHHHcCCCEE------E------ecCC-----------------------------------cccCCh
Q 030024 97 RNGPSAFKEYVEDCKQVGFDTI------E------LNVG-----------------------------------SLEIPE 129 (184)
Q Consensus 97 ~qg~~~~~~yl~~~k~lGF~~I------E------ISdG-----------------------------------ti~i~~ 129 (184)
..+...+.+-+++++++|...+ + ..+| ..-++.
T Consensus 162 ~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~~~~~~~~~~~~~rP~~aE~~av~r~~~la~~~~~~~hi~hvs~ 241 (429)
T PRK09059 162 VANTQVMRRALTYARDFDAVIVHETRDPDLGGNGVMNEGLFASWLGLSGIPREAEVIPLERDLRLAALTRGRYHAAQISC 241 (429)
T ss_pred cCCHHHHHHHHHHHHhcCCEEEEecCChhhhcCCCcCCcHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCC
Confidence 0111124455566666664332 1 1111 124566
Q ss_pred hHHHHHHHHHHHCCCeEcccccccc
Q 030024 130 ETLLRYVRLVKSAGLKAKPKFAVMF 154 (184)
Q Consensus 130 ~~r~~lI~~~~~~Gf~v~~EvG~K~ 154 (184)
.+-.++|+++++.|..|..|+....
T Consensus 242 ~~~~~~i~~ak~~g~~vt~ev~phh 266 (429)
T PRK09059 242 AESAEALRRAKDRGLKVTAGVSINH 266 (429)
T ss_pred HHHHHHHHHHHHCCCCEEEeecHHH
Confidence 6778999999999999988887664
No 443
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=44.91 E-value=35 Score=31.65 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=51.0
Q ss_pred chhHHHHHHHhh-ccc--ccEEEeeCccccccChhHHHHHHHHHHhCCceecCc-c---HHHHHH---------HhC--C
Q 030024 39 SHNVLEDIFESM-GQF--VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-D---WAEHLI---------RNG--P 100 (184)
Q Consensus 39 g~~~leDlLe~a-g~y--ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G-t---lfE~al---------~qg--~ 100 (184)
+++.++++++.- -++ +|..|.|+ +++ .++..++|+.|||.++|+ + ....+. ..+ +
T Consensus 305 ~~~~~~~ll~~~a~dil~~d~~~~GG----it~---~~kia~lA~a~gi~~~pH~s~~~~~a~~~~~~~~~~~~~~~~~~ 377 (415)
T cd03324 305 NRVVFKQLLQAGAIDVVQIDSCRLGG----VNE---NLAVLLMAAKFGVPVCPHAGGVGLCELVQHLSMIDYICVSGSKE 377 (415)
T ss_pred CHHHHHHHHHcCCCCEEEeCccccCC----HHH---HHHHHHHHHHcCCeEEEcCCHHHHHHHHHHhhcccccccCCccc
Confidence 777888888743 232 24445555 332 678899999999999985 2 233221 111 1
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCCh
Q 030024 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPE 129 (184)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~ 129 (184)
+.+-+|++...++=.+-+++.||.+.+|.
T Consensus 378 ~~~~e~~~~~~~~~~~~~~~~dG~l~lp~ 406 (415)
T cd03324 378 GRVIEYVDHLHEHFVYPVVIQNGAYMPPT 406 (415)
T ss_pred cchhhhHHHHHhhccCCCeeeCCEEECCC
Confidence 12345554444444456788899888875
No 444
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=44.75 E-value=1.8e+02 Score=24.20 Aligned_cols=98 Identities=9% Similarity=0.140 Sum_probs=60.6
Q ss_pred hHHHHHHHhhc-ccccEEEeeCccccccChhHHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 030024 41 NVLEDIFESMG-QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (184)
Q Consensus 41 ~~leDlLe~ag-~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~~yl~~~k~lGF~~ 117 (184)
..++.-|+..+ +|||++-+-|=.........+-+-++-+++.|.-=+.| ++= ++.+++.++.+ ...|++
T Consensus 97 ~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~-------~~~l~~~~~~~-~~~~~~ 168 (285)
T cd06660 97 RAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFS-------AEQLEEALAAA-GVPPAV 168 (285)
T ss_pred HHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCC-------HHHHHHHHHhh-CCCceE
Confidence 56677777775 99999999985544432334666667777777544444 222 11333333333 356777
Q ss_pred EEecCCcccCChhHHHHHHHHHHHCCCeEcc
Q 030024 118 IELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (184)
+.+-=.-..-..+. .+++.++++|..+..
T Consensus 169 ~q~~~n~~~~~~~~--~~~~~~~~~gi~v~~ 197 (285)
T cd06660 169 NQVEYNLLDRQAEE--ELLPYCREHGIGVIA 197 (285)
T ss_pred EecccCcccCchHH--HHHHHHHHcCcEEEE
Confidence 77766655555443 788999999877643
No 445
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=44.67 E-value=1.2e+02 Score=26.30 Aligned_cols=91 Identities=14% Similarity=0.236 Sum_probs=43.9
Q ss_pred HHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 030024 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (184)
Q Consensus 42 ~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEIS 121 (184)
.+-+.|..+| ||.|=+|+..+. |. ..+-++...+.+.....-+|. . .-.+.++.+.+.|.+.|.+.
T Consensus 26 ~i~~~L~~~G--v~~IEvG~P~~~--~~--~~~~~~~l~~~~~~~~v~~~~-----r---~~~~di~~a~~~g~~~i~i~ 91 (262)
T cd07948 26 EIAKALDAFG--VDYIELTSPAAS--PQ--SRADCEAIAKLGLKAKILTHI-----R---CHMDDARIAVETGVDGVDLV 91 (262)
T ss_pred HHHHHHHHcC--CCEEEEECCCCC--HH--HHHHHHHHHhCCCCCcEEEEe-----c---CCHHHHHHHHHcCcCEEEEE
Confidence 4455666666 777777764322 22 344444444333221111231 1 11234666666777777664
Q ss_pred CCc--------ccCChhH----HHHHHHHHHHCCCeE
Q 030024 122 VGS--------LEIPEET----LLRYVRLVKSAGLKA 146 (184)
Q Consensus 122 dGt--------i~i~~~~----r~~lI~~~~~~Gf~v 146 (184)
... ...+.++ -.++|+.+++.|++|
T Consensus 92 ~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v 128 (262)
T cd07948 92 FGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEV 128 (262)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 321 1222222 344556777777664
No 446
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=44.62 E-value=23 Score=37.28 Aligned_cols=40 Identities=3% Similarity=0.096 Sum_probs=34.9
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 030024 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (184)
+-+..+.+.++|.+.|=|.|-.--+.+..-.++|+.++++
T Consensus 691 ~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~ 730 (1143)
T TIGR01235 691 YTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREK 730 (1143)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHh
Confidence 3355666788999999999999999999999999999986
No 447
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=44.57 E-value=90 Score=28.74 Aligned_cols=71 Identities=13% Similarity=0.150 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh----hHHHHHHHHHHHCCCe
Q 030024 70 PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE----ETLLRYVRLVKSAGLK 145 (184)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~----~~r~~lI~~~~~~Gf~ 145 (184)
+.+.+.|+-.++++|.+..+. ++....++.+.+.+.|.+.|.|+-.+.+-.+ .++..+++..++.+..
T Consensus 118 ~l~~~iv~~~~~~~V~v~vr~--------~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ip 189 (368)
T PRK08649 118 ELITERIAEIRDAGVIVAVSL--------SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVP 189 (368)
T ss_pred HHHHHHHHHHHhCeEEEEEec--------CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCC
Confidence 334445555555555553332 2335778888888999999999765544221 1455677777777766
Q ss_pred Ecc
Q 030024 146 AKP 148 (184)
Q Consensus 146 v~~ 148 (184)
|+.
T Consensus 190 VIa 192 (368)
T PRK08649 190 VIV 192 (368)
T ss_pred EEE
Confidence 654
No 448
>PLN02621 nicotinamidase
Probab=44.46 E-value=69 Score=26.14 Aligned_cols=82 Identities=15% Similarity=0.012 Sum_probs=58.4
Q ss_pred cccccEEEeeCccccccChhHHHHHHHHHHhCCce--ecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC
Q 030024 51 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY--VSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP 128 (184)
Q Consensus 51 g~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~--v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~ 128 (184)
++++ +.|- ..+++.+.+ |.+ .++++||. +..|--.++|+.+- ...+.++||+.+=++|++-+.+
T Consensus 101 ~~~v-i~K~--~~saf~~t~-L~~---~L~~~gi~~lvi~Gv~T~~CV~~T-------a~~a~~~gy~v~v~~Da~as~~ 166 (197)
T PLN02621 101 PDEV-VEKS--TYSAFYNTR-LEE---RLRKIGVKEVIVTGVMTNLCCETT-------AREAFVRGFRVFFSTDATATAN 166 (197)
T ss_pred CCEE-EECC--CcCCCCCCc-HHH---HHHHCCCCEEEEEecccchhHHHH-------HHHHHHCCCEEEEeccccCCCC
Confidence 4443 4464 345555542 443 46789984 44577889888874 3557789999999999999999
Q ss_pred hhHHHHHHHHHHHCCCeE
Q 030024 129 EETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 129 ~~~r~~lI~~~~~~Gf~v 146 (184)
.+.....++..+..+-.+
T Consensus 167 ~~~h~~al~~~~~~~~~v 184 (197)
T PLN02621 167 EELHEATLKNLAYGFAYL 184 (197)
T ss_pred HHHHHHHHHHHHhhceEe
Confidence 998888888888775444
No 449
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=44.09 E-value=68 Score=28.82 Aligned_cols=56 Identities=20% Similarity=0.217 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHhC-CceecCc---cHHHHHHHhCC--chHHHHHHHHHHcC-CCEEEecCCccc
Q 030024 70 PFIEEVVKRAHQH-DVYVSTG---DWAEHLIRNGP--SAFKEYVEDCKQVG-FDTIELNVGSLE 126 (184)
Q Consensus 70 ~~L~eKI~l~~~~-gV~v~~G---tlfE~al~qg~--~~~~~yl~~~k~lG-F~~IEISdGti~ 126 (184)
..+.+.++-.++. |..+..| ++.|.. ..|. +..-++.+.+.+.| +|.|+||.|+..
T Consensus 192 r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~-~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~ 254 (343)
T cd04734 192 RFLLEVLAAVRAAVGPDFIVGIRISGDEDT-EGGLSPDEALEIAARLAAEGLIDYVNVSAGSYY 254 (343)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEeehhhcc-CCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCC
Confidence 6777888877775 4333223 233321 1111 12335556666778 999999998764
No 450
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=44.02 E-value=50 Score=31.59 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcccccc
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG~ 152 (184)
-++.|++.+.+.|++.+-|-|..-++ +.-...|+.+++.|..|..=++.
T Consensus 106 vv~~fv~~a~~~Gidi~Rifd~lnd~--~n~~~ai~~ak~~G~~~~~~i~y 154 (468)
T PRK12581 106 IVDKFISLSAQNGIDVFRIFDALNDP--RNIQQALRAVKKTGKEAQLCIAY 154 (468)
T ss_pred HHHHHHHHHHHCCCCEEEEcccCCCH--HHHHHHHHHHHHcCCEEEEEEEE
Confidence 56677777777777777777755533 33345677777777766543333
No 451
>PLN02161 beta-amylase
Probab=43.79 E-value=51 Score=32.18 Aligned_cols=51 Identities=25% Similarity=0.291 Sum_probs=38.0
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecC--------CcccCChhHHHHHHHHHHHCCCeEcc
Q 030024 98 NGPSAFKEYVEDCKQVGFDTIELNV--------GSLEIPEETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISd--------Gti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (184)
++++.+...|+.+|.+|++.|+|.- |--.-+=.--.+|.+++++.|||+.+
T Consensus 114 ~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~ 172 (531)
T PLN02161 114 KRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRLISEAGLKLHV 172 (531)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEE
Confidence 3344788899999999999988753 33333445567889999999999866
No 452
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=43.27 E-value=1.3e+02 Score=25.88 Aligned_cols=100 Identities=18% Similarity=0.281 Sum_probs=60.1
Q ss_pred HHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCc---eecCccHHHHHH--HhCCchHH---HHHHHHHHc
Q 030024 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV---YVSTGDWAEHLI--RNGPSAFK---EYVEDCKQV 113 (184)
Q Consensus 42 ~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV---~v~~GtlfE~al--~qg~~~~~---~yl~~~k~l 113 (184)
.+.++++.+.++ -+-++.+-|..+ .+.+.++.++++|+ .++.-++=+..+ ..+.+.++ +-++.+++.
T Consensus 72 ~l~~iv~~l~~~-g~~~v~i~TNG~----ll~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~ 146 (302)
T TIGR02668 72 DLIEIIRRIKDY-GIKDVSMTTNGI----LLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDA 146 (302)
T ss_pred CHHHHHHHHHhC-CCceEEEEcCch----HHHHHHHHHHHCCCCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHc
Confidence 456677766543 111555544332 35566666777765 555534322221 12223444 456677788
Q ss_pred CCCEEEecCCccc-CChhHHHHHHHHHHHCCCeE
Q 030024 114 GFDTIELNVGSLE-IPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 114 GF~~IEISdGti~-i~~~~r~~lI~~~~~~Gf~v 146 (184)
|+..|.|+---+. .+.++..++++.+++.|+.+
T Consensus 147 G~~~v~i~~v~~~g~n~~ei~~~~~~~~~~g~~~ 180 (302)
T TIGR02668 147 GLTPVKLNMVVLKGINDNEIPDMVEFAAEGGAIL 180 (302)
T ss_pred CCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCCEE
Confidence 9986776644445 77888999999999999876
No 453
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=43.22 E-value=28 Score=25.40 Aligned_cols=71 Identities=15% Similarity=0.086 Sum_probs=41.7
Q ss_pred chhHHHHHHHhhcccccEEEeeCccc-cccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcC-CC
Q 030024 39 SHNVLEDIFESMGQFVDGLKFSGGSH-SLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVG-FD 116 (184)
Q Consensus 39 g~~~leDlLe~ag~yID~lKfg~GTs-~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lG-F~ 116 (184)
++..++++++. .-+|++-+--.-+ =+. ..++.+++|+.|||.++++++ |.-+..- ..+..+..+. ++
T Consensus 6 ~~~~~~~li~~--~a~d~~~~~~~~~GGit---~~~~i~~~A~~~gi~~~~h~~-~~~i~~a-----a~~hlaaa~~~~~ 74 (111)
T PF13378_consen 6 SLHDFRRLIEA--GAVDIVQIDPTRCGGIT---EALRIAALAEAHGIPVMPHSM-ESGIGLA-----ASLHLAAALPNCD 74 (111)
T ss_dssp SHHHHHHHHHT--TSCSEEEEBHHHHTSHH---HHHHHHHHHHHTT-EEEEBSS-SSHHHHH-----HHHHHHHTSTTBS
T ss_pred CHHHHHHHHHc--CCCCEEEeCchhcCCHH---HHHHHHHHHHHhCCCEEecCC-CCcHHHH-----HHHHHHHhcCCCC
Confidence 67788888883 3356665431110 022 278899999999999999876 5544331 1222233332 66
Q ss_pred EEEe
Q 030024 117 TIEL 120 (184)
Q Consensus 117 ~IEI 120 (184)
.+|.
T Consensus 75 ~~e~ 78 (111)
T PF13378_consen 75 WLEY 78 (111)
T ss_dssp EEEE
T ss_pred cccc
Confidence 6666
No 454
>PRK14085 imidazolonepropionase; Provisional
Probab=43.19 E-value=1.2e+02 Score=27.13 Aligned_cols=41 Identities=2% Similarity=0.021 Sum_probs=28.4
Q ss_pred HHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecC
Q 030024 47 FESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST 88 (184)
Q Consensus 47 Le~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~ 88 (184)
+..+.++.|.+|+-... -.++.+.+++.++.+|++|+.+..
T Consensus 185 ~~~~~~~~~~idi~~~~-~~~~~~~l~~~~~~a~~~g~~v~~ 225 (382)
T PRK14085 185 LDAVAPHARWIDVFCER-GAFDEDQSRRVLTAGRAAGLGLRV 225 (382)
T ss_pred HHHHHHhCCeEEEEecC-CCCCHHHHHHHHHHHHHcCCCeEE
Confidence 45556677777764322 245667799999999999986654
No 455
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=43.16 E-value=1.3e+02 Score=27.44 Aligned_cols=89 Identities=12% Similarity=0.165 Sum_probs=55.3
Q ss_pred ChhHHHHHHHHHHhCCcee-----cCcc-HHH-HHHHhCCchHHHHHHHHHHcC--CCEEEecCCccc--CChhHHHHHH
Q 030024 68 PKPFIEEVVKRAHQHDVYV-----STGD-WAE-HLIRNGPSAFKEYVEDCKQVG--FDTIELNVGSLE--IPEETLLRYV 136 (184)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v-----~~Gt-lfE-~al~qg~~~~~~yl~~~k~lG--F~~IEISdGti~--i~~~~r~~lI 136 (184)
+.+.+.+-+++++++|+.+ ..|+ ... ..+.+.-+...+.++.++++| ++.|.|--|+-. .+.++..+.|
T Consensus 148 ~~~~~~~~l~~~~~~~l~~~Gih~HiGS~~~~~~~~~~a~~~~~~~~~~~~~~g~~l~~ldiGGGf~~~~~~~~~~~~~i 227 (394)
T cd06831 148 TLKNCRHLLECAKELDVQIVGVKFHVSSSCKEYQTYVHALSDARCVFDMAEEFGFKMNMLDIGGGFTGSEIQLEEVNHVI 227 (394)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEeCCCcCCCCCCHHHHHHHH
Confidence 3445788888889988765 3352 221 111111013456777788887 588999999832 3556667777
Q ss_pred HHHHHC------CCeEccccccccCC
Q 030024 137 RLVKSA------GLKAKPKFAVMFNK 156 (184)
Q Consensus 137 ~~~~~~------Gf~v~~EvG~K~~~ 156 (184)
+.+.+. +++++.|-|.-.-+
T Consensus 228 ~~~l~~~~~~~~~~~li~EPGR~lva 253 (394)
T cd06831 228 RPLLDVYFPEGSGIQIIAEPGSYYVS 253 (394)
T ss_pred HHHHHHhcCcCCCCEEEEeCChhhhh
Confidence 776653 57888887764433
No 456
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=42.95 E-value=1.5e+02 Score=25.09 Aligned_cols=100 Identities=13% Similarity=0.179 Sum_probs=59.1
Q ss_pred hHHHHHHHhhcc-----cccEEEeeCccccccChhHHHHHHHHHHhCCce---ec-Cc-cHHHHHHHhCCch-----HHH
Q 030024 41 NVLEDIFESMGQ-----FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY---VS-TG-DWAEHLIRNGPSA-----FKE 105 (184)
Q Consensus 41 ~~leDlLe~ag~-----yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~---v~-~G-tlfE~al~qg~~~-----~~~ 105 (184)
-.|+|+|+.+.+ +|+ ||-..+. .-++...++..+++++++|.. +. .- ...+.+-.+.|+. ...
T Consensus 114 PtL~evl~~~~~~~~~l~iE-iK~~~~~-~~~~~~~~~~v~~~l~~~~~~~~~v~~s~~~~~~~~~~~~p~~~~~~~~~~ 191 (252)
T cd08574 114 PSLAELLRLAKKHNKSVIFD-LRRPPPN-HPYYQSYVNITLDTILASGIPQHQVFWLPDEYRALVRKVAPGFQQVSGRKL 191 (252)
T ss_pred CCHHHHHHHHHHcCCeEEEE-ecCCccc-CccHHHHHHHHHHHHHHcCCCcccEEEccHHHHHHHHHHCCCCeEeecccc
Confidence 378888887753 233 4753321 123345778899999999862 22 22 2333333333321 122
Q ss_pred HHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcc
Q 030024 106 YVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 106 yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (184)
+....+++|++.+-++...++ .++|+.+++.|+.|.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~g~~v~~ 228 (252)
T cd08574 192 PVESLRENGISRLNLEYSQLS------AQEIREYSKANISVNL 228 (252)
T ss_pred chHHHHhcCCeEEccCcccCC------HHHHHHHHHCCCEEEE
Confidence 334556688887766654442 3689999999999865
No 457
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=42.92 E-value=78 Score=27.43 Aligned_cols=69 Identities=20% Similarity=0.144 Sum_probs=50.0
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCCCCCCchhhhhccccccCCCCCCC
Q 030024 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 179 (184)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG~K~~~~~~~~~~~~a~ga~~~~~~~~~~ 179 (184)
-++.++.+.+.|.|+|-|. ||..+..+.-.++++++++..+-+.=|.|--.+- + +.+-||..|+==||.
T Consensus 21 ~~~~~~~~~~~gtdai~vG-GS~~vt~~~~~~~v~~ik~~~lPvilfp~~~~~i-----~--~~aDa~l~~svlNs~ 89 (232)
T PRK04169 21 PDEALEAICESGTDAIIVG-GSDGVTEENVDELVKAIKEYDLPVILFPGNIEGI-----S--PGADAYLFPSVLNSR 89 (232)
T ss_pred CHHHHHHHHhcCCCEEEEc-CCCccchHHHHHHHHHHhcCCCCEEEeCCCcccc-----C--cCCCEEEEEEEecCC
Confidence 3455578999999999885 8888999999999999999766666665544332 2 226677777764443
No 458
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=42.66 E-value=1.2e+02 Score=26.28 Aligned_cols=90 Identities=21% Similarity=0.222 Sum_probs=63.8
Q ss_pred HHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCceecC---ccHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 030024 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (184)
Q Consensus 42 ~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~---GtlfE~al~qg~~~~~~yl~~~k~lGF~~I 118 (184)
+.+-..+.-++++-++ .+.|.+.++.-++.+|++|+.++- |.| .+++-.++.+++|.+.+
T Consensus 72 e~~ma~~aGAd~~tV~-------g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~----------~~~~~~~~l~~~gvd~~ 134 (217)
T COG0269 72 EARMAFEAGADWVTVL-------GAADDATIKKAIKVAKEYGKEVQIDLIGVW----------DPEQRAKWLKELGVDQV 134 (217)
T ss_pred HHHHHHHcCCCEEEEE-------ecCCHHHHHHHHHHHHHcCCeEEEEeecCC----------CHHHHHHHHHHhCCCEE
Confidence 4444555555555543 367788899999999999998875 333 34445556888999999
Q ss_pred EecCCcc----cCCh-hHHHHHHHHHHHCCCeEcc
Q 030024 119 ELNVGSL----EIPE-ETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 119 EISdGti----~i~~-~~r~~lI~~~~~~Gf~v~~ 148 (184)
.+--|.- -.+. .+.++-|++..+.|+++-.
T Consensus 135 ~~H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAV 169 (217)
T COG0269 135 ILHRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAV 169 (217)
T ss_pred EEEecccHhhcCCCccHHHHHHHHHhhccCceEEE
Confidence 9987754 2344 4567889999999888743
No 459
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=42.55 E-value=79 Score=25.86 Aligned_cols=65 Identities=11% Similarity=0.112 Sum_probs=47.5
Q ss_pred HHHHHhCCc-e-ecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC--ChhHHHHHHHHHHHCCCeEc
Q 030024 76 VKRAHQHDV-Y-VSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI--PEETLLRYVRLVKSAGLKAK 147 (184)
Q Consensus 76 I~l~~~~gV-~-v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i--~~~~r~~lI~~~~~~Gf~v~ 147 (184)
-.+++++|| . +..|--.+.|+.+- . ..+.++||+.+=++|++-+. +.+.....++.+...|-+|.
T Consensus 134 ~~~L~~~gi~~lii~G~~T~~CV~~T--a-----~dA~~~gy~v~v~~Da~a~~~~~~~~~~~al~~~~~~~~~v~ 202 (212)
T PRK11609 134 DDWLREHGITELIVMGLATDYCVKFT--V-----LDALALGYQVNVITDGCRGVNLQPQDSAHAFMEMSAAGATLY 202 (212)
T ss_pred HHHHHHcCCCEEEEEEeccCHHHHHH--H-----HHHHHCCCEEEEEeeccCCCCCCchhHHHHHHHHHHCCCEEE
Confidence 356678999 3 44487888888874 3 33778999999999999886 46655566777777765554
No 460
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=42.53 E-value=63 Score=27.77 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHH
Q 030024 103 FKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKS 141 (184)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~ 141 (184)
++++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+
T Consensus 24 ~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~ 65 (289)
T PF00701_consen 24 LKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVE 65 (289)
T ss_dssp HHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHH
Confidence 444444444444444444322 234445555544444433
No 461
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=42.53 E-value=2.2e+02 Score=25.25 Aligned_cols=54 Identities=20% Similarity=0.324 Sum_probs=37.8
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEcccccc
Q 030024 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (184)
Q Consensus 92 fE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG~ 152 (184)
.+.++..+. .+++.++.+-+.+.+.|-.+-|.-. .++|+++++.|.+|++-++.
T Consensus 92 ~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~G~p~------~~~i~~l~~~gi~v~~~v~s 145 (330)
T PF03060_consen 92 LELCIEEGV-PFEEQLDVALEAKPDVVSFGFGLPP------PEVIERLHAAGIKVIPQVTS 145 (330)
T ss_dssp HHHHHHTT--SHHHHHHHHHHS--SEEEEESSSC-------HHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHhCc-ccccccccccccceEEEEeecccch------HHHHHHHHHcCCccccccCC
Confidence 455555552 2778888888889999999988643 36789999999999987764
No 462
>PRK10319 N-acetylmuramoyl-l-alanine amidase I; Provisional
Probab=42.52 E-value=1.4e+02 Score=26.46 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHH
Q 030024 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKS 141 (184)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~ 141 (184)
++.++| ++.|++++=.-++-..++..+|.++....+.
T Consensus 90 ~l~~~L---~~~G~~V~lTR~~D~~vsL~~R~~~An~~~A 126 (287)
T PRK10319 90 NVRSIL---RNHGIDARLTRSGDTFIPLYDRVEIAHKHGA 126 (287)
T ss_pred HHHHHH---HHCCCEEEEeCCCCCCCCHHHHHHHHHhcCC
Confidence 444454 4459999999999899999999888887544
No 463
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=42.40 E-value=1.8e+02 Score=25.62 Aligned_cols=102 Identities=15% Similarity=0.208 Sum_probs=61.4
Q ss_pred hHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCc---eecCccHHHHHH--HhCCch---HHHHHHHHHH
Q 030024 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV---YVSTGDWAEHLI--RNGPSA---FKEYVEDCKQ 112 (184)
Q Consensus 41 ~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV---~v~~GtlfE~al--~qg~~~---~~~yl~~~k~ 112 (184)
..+.++++.+.++-.+-+++.- ++-..+.+.++.++++|+ .++.-++=+..+ ..+.+. +-+-++.+++
T Consensus 76 ~dl~~li~~i~~~~~l~~i~it----TNG~ll~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~ 151 (329)
T PRK13361 76 RGCDQLVARLGKLPGLEELSLT----TNGSRLARFAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKA 151 (329)
T ss_pred ccHHHHHHHHHhCCCCceEEEE----eChhHHHHHHHHHHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHH
Confidence 4566777766554322134333 333335567777888876 355534322111 122223 5556677788
Q ss_pred cCCCEEEecCCcc-cCChhHHHHHHHHHHHCCCeE
Q 030024 113 VGFDTIELNVGSL-EIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 113 lGF~~IEISdGti-~i~~~~r~~lI~~~~~~Gf~v 146 (184)
.|+..|.|+-=.+ ..+.++..++++.+++.|..+
T Consensus 152 ~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~~ 186 (329)
T PRK13361 152 AGFERIKLNAVILRGQNDDEVLDLVEFCRERGLDI 186 (329)
T ss_pred cCCCceEEEEEEECCCCHHHHHHHHHHHHhcCCeE
Confidence 9997777764333 367788999999999999876
No 464
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=42.34 E-value=1.6e+02 Score=27.71 Aligned_cols=90 Identities=14% Similarity=0.186 Sum_probs=39.5
Q ss_pred ccEEEeeCccccccChhHHHHHHHHHHhC-Cce-ecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEec-CCcccCChh
Q 030024 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVY-VSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN-VGSLEIPEE 130 (184)
Q Consensus 54 ID~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~-v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEIS-dGti~i~~~ 130 (184)
|.-|-|++|=-.+.+.+.|+..++.+++. +|. +..||=.=+++-+- --++.++.+++.+..+|=++ |+--++..+
T Consensus 156 I~~VlLSGGDPLll~d~~L~~iL~~L~~IphV~~IRI~TR~pvv~P~R--IT~ell~~Lk~~~~~~v~~h~nhp~Eit~~ 233 (417)
T TIGR03820 156 IRDVLLSGGDPLLLSDDYLDWILTELRAIPHVEVIRIGTRVPVVLPQR--ITDELVAILKKHHPVWLNTHFNHPREITAS 233 (417)
T ss_pred CCEEEEeCCccccCChHHHHHHHHHHhhcCCCceEEEeeccccccccc--cCHHHHHHHHhcCCeEEEEeCCChHhChHH
Confidence 44455666666666555555544554443 332 22233222222111 12345555555554444333 222233333
Q ss_pred HHHHHHHHHHHCCCeE
Q 030024 131 TLLRYVRLVKSAGLKA 146 (184)
Q Consensus 131 ~r~~lI~~~~~~Gf~v 146 (184)
.+ +.|+++++.|..+
T Consensus 234 a~-~Al~~L~~aGI~l 248 (417)
T TIGR03820 234 SK-KALAKLADAGIPL 248 (417)
T ss_pred HH-HHHHHHHHcCCEE
Confidence 32 5555555555544
No 465
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=42.33 E-value=42 Score=28.86 Aligned_cols=83 Identities=19% Similarity=0.255 Sum_probs=48.1
Q ss_pred HHHHHhh-cccccEEEeeCccccccChhHHHHHHHHHHhCCceecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 030024 44 EDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (184)
Q Consensus 44 eDlLe~a-g~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G-tlfE~al~qg~~~~~~yl~~~k~lGF~~IEIS 121 (184)
+.+++.. .+|||+= + -.+.+.+++-++.+|++|+.+-.= --|+.--.. +.+.+.++.++++|.|.|-|-
T Consensus 102 ~~~~~~~~~d~vDiE-l------~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tP~~--~~l~~~~~~~~~~gaDivKia 172 (253)
T PRK02412 102 KAVIKSGLPDYIDVE-L------FSGKDVVKEMVAFAHEHGVKVVLSYHDFEKTPPK--EEIVERLRKMESLGADIVKIA 172 (253)
T ss_pred HHHHhcCCCCEEEEe-c------cCChHHHHHHHHHHHHcCCEEEEeeCCCCCCcCH--HHHHHHHHHHHHhCCCEEEEE
Confidence 4444444 4888872 1 234667888899999888855321 001100000 136677888999999999986
Q ss_pred CCcccCChhHHHHHHH
Q 030024 122 VGSLEIPEETLLRYVR 137 (184)
Q Consensus 122 dGti~i~~~~r~~lI~ 137 (184)
--.-+. +|-+++++
T Consensus 173 ~~a~~~--~D~~~ll~ 186 (253)
T PRK02412 173 VMPQSE--QDVLTLLN 186 (253)
T ss_pred ecCCCH--HHHHHHHH
Confidence 544333 33344443
No 466
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=42.33 E-value=49 Score=29.22 Aligned_cols=18 Identities=6% Similarity=-0.105 Sum_probs=8.3
Q ss_pred cChhHHHHHHHHHHhCCc
Q 030024 67 MPKPFIEEVVKRAHQHDV 84 (184)
Q Consensus 67 ~p~~~L~eKI~l~~~~gV 84 (184)
++.+.+.+.++.++++|+
T Consensus 72 ls~eei~~~~~~~~~~G~ 89 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGG 89 (340)
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 333444444444445554
No 467
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=42.29 E-value=1.1e+02 Score=28.33 Aligned_cols=85 Identities=14% Similarity=0.160 Sum_probs=54.1
Q ss_pred EEEeeCccccccCh---hH----HHHHHHH-HHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEE--------
Q 030024 56 GLKFSGGSHSLMPK---PF----IEEVVKR-AHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE-------- 119 (184)
Q Consensus 56 ~lKfg~GTs~l~p~---~~----L~eKI~l-~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IE-------- 119 (184)
++|+..+|+..++. .. +++-+++ |-.-++.+|+|.=.|.--.+ .+-+-.++|+++|+-.|-
T Consensus 129 Ilkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~Gs~~E~~ml~---~l~~i~~ea~~~GlPlv~~~YpRG~~ 205 (348)
T PRK09250 129 ILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIYFGSEESRRQIE---EISEAFEEAHELGLATVLWSYLRNSA 205 (348)
T ss_pred EEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHHHHHH---HHHHHHHHHHHhCCCEEEEecccCcc
Confidence 58888888774433 12 3333333 23334588899767765555 578889999999999885
Q ss_pred ecCCc-ccCChhHHHHHHHHHHHCC
Q 030024 120 LNVGS-LEIPEETLLRYVRLVKSAG 143 (184)
Q Consensus 120 ISdGt-i~i~~~~r~~lI~~~~~~G 143 (184)
+++.. .+-..+.-....+.+.+.|
T Consensus 206 i~~~~d~~~~~d~Ia~AaRiaaELG 230 (348)
T PRK09250 206 FKKDGDYHTAADLTGQANHLAATIG 230 (348)
T ss_pred cCCcccccccHHHHHHHHHHHHHHc
Confidence 44433 1333455666677777777
No 468
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=42.22 E-value=1.6e+02 Score=22.73 Aligned_cols=76 Identities=20% Similarity=0.130 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC-C--hhHHHHHHHHHHHC--
Q 030024 70 PFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI-P--EETLLRYVRLVKSA-- 142 (184)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i-~--~~~r~~lI~~~~~~-- 142 (184)
+.++.-.+.+..+.+++..| ..-.. ...+..-+..+.++++|.|+|.+-.-.--. + .+.-.+.++.+.+.
T Consensus 35 ~~i~~~~~~~~~~~~~v~~~v~~~~~~---~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~ 111 (201)
T cd00945 35 GYVRLAADALAGSDVPVIVVVGFPTGL---TTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAAD 111 (201)
T ss_pred HHHHHHHHHhCCCCCeEEEEecCCCCC---CcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 55565555555435665553 11100 111245566778899999999986443322 2 45556666666665
Q ss_pred -CCeEcc
Q 030024 143 -GLKAKP 148 (184)
Q Consensus 143 -Gf~v~~ 148 (184)
++.+..
T Consensus 112 ~~~pv~i 118 (201)
T cd00945 112 GGLPLKV 118 (201)
T ss_pred CCceEEE
Confidence 676653
No 469
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=42.20 E-value=24 Score=33.18 Aligned_cols=29 Identities=7% Similarity=0.152 Sum_probs=26.0
Q ss_pred ccCChhHHHHHHHHHHHCCCeEccccccc
Q 030024 125 LEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (184)
Q Consensus 125 i~i~~~~r~~lI~~~~~~Gf~v~~EvG~K 153 (184)
--.+.++..++|+.|+++|..|+|||-.-
T Consensus 92 g~YT~~di~eiv~yA~~rgI~VIPEID~P 120 (445)
T cd06569 92 GYYSRADYIEILKYAKARHIEVIPEIDMP 120 (445)
T ss_pred CccCHHHHHHHHHHHHHcCCEEEEccCCc
Confidence 35799999999999999999999999764
No 470
>PRK12999 pyruvate carboxylase; Reviewed
Probab=42.13 E-value=80 Score=33.37 Aligned_cols=101 Identities=7% Similarity=0.050 Sum_probs=72.0
Q ss_pred chhHHHHHHHh-hcccccEEEeeCccccccChhHHHHHHHHHHhCCc--eecCc-c-HHHHHHH--hCCchHHHHHHHHH
Q 030024 39 SHNVLEDIFES-MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTG-D-WAEHLIR--NGPSAFKEYVEDCK 111 (184)
Q Consensus 39 g~~~leDlLe~-ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV--~v~~G-t-lfE~al~--qg~~~~~~yl~~~k 111 (184)
+-.-.+++++. +..-||++-+.-...-+ +.++.-|+.++++|- .++.+ | .+.-+.. ...+.+-++.+.+.
T Consensus 625 p~~v~~~~i~~a~~~Gid~~rifd~lnd~---~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~ 701 (1146)
T PRK12999 625 PDNVVRAFVREAAAAGIDVFRIFDSLNWV---ENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELE 701 (1146)
T ss_pred CchHHHHHHHHHHHcCCCEEEEeccCChH---HHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHH
Confidence 33456776655 45569999988654443 459999999999993 23322 1 2222222 23335666777788
Q ss_pred HcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 030024 112 QVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (184)
Q Consensus 112 ~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (184)
++|.+.|=|.|-.--+.+.+-.++|+.++++
T Consensus 702 ~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~ 732 (1146)
T PRK12999 702 KAGAHILAIKDMAGLLKPAAAYELVSALKEE 732 (1146)
T ss_pred HcCCCEEEECCccCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999986
No 471
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=42.04 E-value=47 Score=29.51 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHCCCeEcccc
Q 030024 129 EETLLRYVRLVKSAGLKAKPKF 150 (184)
Q Consensus 129 ~~~r~~lI~~~~~~Gf~v~~Ev 150 (184)
-|-...+|+.|.++|++|++=+
T Consensus 69 ~DpL~~~I~eaHkrGlevHAW~ 90 (311)
T PF02638_consen 69 FDPLEFMIEEAHKRGLEVHAWF 90 (311)
T ss_pred ccHHHHHHHHHHHcCCEEEEEE
Confidence 3456778888888888887755
No 472
>PLN02705 beta-amylase
Probab=42.03 E-value=54 Score=32.84 Aligned_cols=66 Identities=11% Similarity=0.054 Sum_probs=46.8
Q ss_pred ceecCccHHHHHH----HhCCchHHHHHHHHHHcCCCEEEecC--------CcccCChhHHHHHHHHHHHCCCeEccc
Q 030024 84 VYVSTGDWAEHLI----RNGPSAFKEYVEDCKQVGFDTIELNV--------GSLEIPEETLLRYVRLVKSAGLKAKPK 149 (184)
Q Consensus 84 V~v~~GtlfE~al----~qg~~~~~~yl~~~k~lGF~~IEISd--------Gti~i~~~~r~~lI~~~~~~Gf~v~~E 149 (184)
|+||-+--++.+- ..+++.+...|..+|.+|++.|+|.- |--.-+=.--.+|.+++++.|||+.+=
T Consensus 247 VpVyVMLPLd~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvV 324 (681)
T PLN02705 247 VPVYVMLAVGIINNFCQLVDPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYRELFNIIREFKLKLQVV 324 (681)
T ss_pred eeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeEEEE
Confidence 7777543333321 23345799999999999999999853 333344556678999999999999663
No 473
>PRK14017 galactonate dehydratase; Provisional
Probab=41.89 E-value=25 Score=31.80 Aligned_cols=57 Identities=18% Similarity=0.157 Sum_probs=39.1
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcccccEE-----EeeCccccccChhHHHHHHHHHHhCCceecCccHHH
Q 030024 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGL-----KFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAE 93 (184)
Q Consensus 25 GlT~V~DkG~s~~~g~~~leDlLe~ag~yID~l-----Kfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE 93 (184)
++-...|=- +. +++.++++++.-+ +|++ |+|+ +++ .++..++|+.|||.+++|.++|
T Consensus 228 ~~pIa~dEs--~~-~~~~~~~li~~~a--~d~v~~d~~~~GG----it~---~~~ia~~A~~~gi~~~~h~~~~ 289 (382)
T PRK14017 228 SIPIATGER--LF-SRWDFKRVLEAGG--VDIIQPDLSHAGG----ITE---CRKIAAMAEAYDVALAPHCPLG 289 (382)
T ss_pred CCCEEeCCc--cC-CHHHHHHHHHcCC--CCeEecCccccCC----HHH---HHHHHHHHHHcCCeEeecCCCC
Confidence 344444443 34 7778888888633 5555 6665 332 6788999999999999987655
No 474
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=41.81 E-value=67 Score=26.37 Aligned_cols=73 Identities=12% Similarity=0.071 Sum_probs=52.9
Q ss_pred EeeCccccccChhHHHHHHHHHHhCCc-e-ecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHH
Q 030024 58 KFSGGSHSLMPKPFIEEVVKRAHQHDV-Y-VSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRY 135 (184)
Q Consensus 58 Kfg~GTs~l~p~~~L~eKI~l~~~~gV-~-v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~l 135 (184)
|--+ ++++..+ |.+ +++++|| . +..|..-+.|+.+- ...+-++||+.+=++|++-+.+.+.....
T Consensus 122 K~~~--saF~~T~-L~~---~Lr~~gi~~lii~Gv~T~~CV~~T-------a~~A~~~Gy~v~vv~Da~as~~~~~h~~a 188 (203)
T cd01013 122 KWRY--SAFKRSP-LLE---RLKESGRDQLIITGVYAHIGCLST-------AVDAFMRDIQPFVVADAIADFSLEEHRMA 188 (203)
T ss_pred CCCc--CCcCCCC-HHH---HHHHcCCCEEEEEEeccChhHHHH-------HHHHHHCCCeEEEeccccCCCCHHHHHHH
Confidence 5443 3444432 444 4688888 3 33488888888774 25578899999999999999998888778
Q ss_pred HHHHHHCC
Q 030024 136 VRLVKSAG 143 (184)
Q Consensus 136 I~~~~~~G 143 (184)
++.+...+
T Consensus 189 l~~l~~~~ 196 (203)
T cd01013 189 LKYAATRC 196 (203)
T ss_pred HHHHHhhe
Confidence 88776553
No 475
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.79 E-value=41 Score=35.01 Aligned_cols=47 Identities=21% Similarity=0.398 Sum_probs=36.3
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCC-cccCChhHHHHHHHHHHHCCCeEcc
Q 030024 98 NGPSAFKEYVEDCKQVGFDTIELNVG-SLEIPEETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdG-ti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (184)
.|..+++++++.|+++|+++|=|+|- ++ .--.+..+.+++.|++++.
T Consensus 14 dg~~~~~elv~~A~~~G~~alAiTDH~~l----~g~~~f~~~~~~~gIkpI~ 61 (1022)
T TIGR00594 14 DGAAKIKPLVKKAKELGMPALALTDHGNM----FGAVEFYKACKKAGIKPII 61 (1022)
T ss_pred cccCCHHHHHHHHHHCCCCEEEEecCCCc----hhHHHHHHHHHHcCCeEEE
Confidence 56668999999999999999999983 33 2234667788888998864
No 476
>PRK06267 hypothetical protein; Provisional
Probab=41.74 E-value=85 Score=28.25 Aligned_cols=82 Identities=17% Similarity=0.070 Sum_probs=47.4
Q ss_pred cccEEEeeCccccccChhHHHHHHHHHHhCC---ceecCc-cHHHHHHHhCCchHHHHHHHHHHcCCC-EEEecCCc--c
Q 030024 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD---VYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFD-TIELNVGS--L 125 (184)
Q Consensus 53 yID~lKfg~GTs~l~p~~~L~eKI~l~~~~g---V~v~~G-tlfE~al~qg~~~~~~yl~~~k~lGF~-~IEISdGt--i 125 (184)
.++.+=+..|.. + +.+.|.+.++..++.. +.++.| .-.+.+-.. +.-|++ .+|.++-. -
T Consensus 79 Gv~~~~lsgG~~-~-~~~el~~i~e~I~~~~~~~~~~s~G~~d~~~~~~~------------~l~Gv~g~~ET~~~~~~~ 144 (350)
T PRK06267 79 GWKLEFISGGYG-Y-TTEEINDIAEMIAYIQGCKQYLNVGIIDFLNINLN------------EIEGVVGAVETVNPKLHR 144 (350)
T ss_pred CCCEEEEecCCC-C-CHHHHHHHHHHHHHhhCCceEeecccCCHHHHhhc------------cccCceeeeecCCHHHHH
Confidence 355443555554 3 4455888888876653 345556 222222111 111222 36666431 1
Q ss_pred ----cCChhHHHHHHHHHHHCCCeEcc
Q 030024 126 ----EIPEETLLRYVRLVKSAGLKAKP 148 (184)
Q Consensus 126 ----~i~~~~r~~lI~~~~~~Gf~v~~ 148 (184)
..+.+++.+.++.+++.|+++.+
T Consensus 145 ~i~~~~s~ed~~~~l~~ak~aGi~v~~ 171 (350)
T PRK06267 145 EICPGKPLDKIKEMLLKAKDLGLKTGI 171 (350)
T ss_pred hhCCCCCHHHHHHHHHHHHHcCCeeee
Confidence 46889999999999999999743
No 477
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=41.71 E-value=1.1e+02 Score=27.34 Aligned_cols=78 Identities=10% Similarity=0.070 Sum_probs=51.4
Q ss_pred ccChhHHHHHHHHHHhCCceecC-----ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHH----HHHH
Q 030024 66 LMPKPFIEEVVKRAHQHDVYVST-----GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETL----LRYV 136 (184)
Q Consensus 66 l~p~~~L~eKI~l~~~~gV~v~~-----GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r----~~lI 136 (184)
..+...|+|.++.+++-||.|.. +++-..-+.+ +.++.+..++++|+..|-| ||++=+.... .+++
T Consensus 69 ~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~---~~~~~f~~~~~~Gv~GvKi--dF~~~d~Q~~v~~y~~i~ 143 (273)
T PF10566_consen 69 PIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEK---QLDEAFKLYAKWGVKGVKI--DFMDRDDQEMVNWYEDIL 143 (273)
T ss_dssp B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHC---CHHHHHHHHHHCTEEEEEE--E--SSTSHHHHHHHHHHH
T ss_pred cCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHH---HHHHHHHHHHHcCCCEEee--CcCCCCCHHHHHHHHHHH
Confidence 55677899999999999975543 1232233444 4699999999999999987 3444443333 4678
Q ss_pred HHHHHCCCeEcc
Q 030024 137 RLVKSAGLKAKP 148 (184)
Q Consensus 137 ~~~~~~Gf~v~~ 148 (184)
+.|+++.|-|-.
T Consensus 144 ~~AA~~~Lmvnf 155 (273)
T PF10566_consen 144 EDAAEYKLMVNF 155 (273)
T ss_dssp HHHHHTT-EEEE
T ss_pred HHHHHcCcEEEe
Confidence 889999998843
No 478
>PRK08393 N-ethylammeline chlorohydrolase; Provisional
Probab=41.71 E-value=1.3e+02 Score=27.22 Aligned_cols=72 Identities=17% Similarity=0.217 Sum_probs=40.4
Q ss_pred cChhHHHHHHHHHHhCCceecC--c-cHHHHHH--HhCCchHHHHHHHHHHcCCCEEE--ecCCcccCChhHHHHHHHHH
Q 030024 67 MPKPFIEEVVKRAHQHDVYVST--G-DWAEHLI--RNGPSAFKEYVEDCKQVGFDTIE--LNVGSLEIPEETLLRYVRLV 139 (184)
Q Consensus 67 ~p~~~L~eKI~l~~~~gV~v~~--G-tlfE~al--~qg~~~~~~yl~~~k~lGF~~IE--ISdGti~i~~~~r~~lI~~~ 139 (184)
.+.+.|++-.+++|++|+++.. + +.-|... .+.+ ...++.+.++|+..-. ++-+ ..++.++ ++++
T Consensus 186 ~s~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~g---~~~~~~l~~~G~l~~~~~~~H~-~~l~~~~----l~~l 257 (424)
T PRK08393 186 CSLALLKWVREKAREWNKLITIHLSETMDEIKQIREKYG---KSPVVLLDEIGFLNEDVIAAHG-VWLSSRD----IRIL 257 (424)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHHHhC---cCHHHHHHHcCCCCCCcEEEEe-ecCCHHH----HHHH
Confidence 4678899999999999998876 4 4444333 2211 1234555666654211 1111 1334443 4556
Q ss_pred HHCCCeE
Q 030024 140 KSAGLKA 146 (184)
Q Consensus 140 ~~~Gf~v 146 (184)
++.|..+
T Consensus 258 a~~g~~v 264 (424)
T PRK08393 258 ASAGVTV 264 (424)
T ss_pred HhcCCEE
Confidence 6667665
No 479
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=41.65 E-value=68 Score=32.85 Aligned_cols=82 Identities=21% Similarity=0.274 Sum_probs=52.3
Q ss_pred EEeeCcccccc-ChhHHHHHHHHHHhCCce--ecCccHHHHHHHh----C----C--------chHH-----HHHHHHHH
Q 030024 57 LKFSGGSHSLM-PKPFIEEVVKRAHQHDVY--VSTGDWAEHLIRN----G----P--------SAFK-----EYVEDCKQ 112 (184)
Q Consensus 57 lKfg~GTs~l~-p~~~L~eKI~l~~~~gV~--v~~GtlfE~al~q----g----~--------~~~~-----~yl~~~k~ 112 (184)
+-|.+.+.... |++..++-|+.+|++||. +.+|.=-|.|..= | . +.++ ++.+.|++
T Consensus 536 l~~lGl~g~~Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~ 615 (917)
T COG0474 536 LVFLGLTGIEDPPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEE 615 (917)
T ss_pred ceeehhhhccCCCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhh
Confidence 34554444444 456799999999999994 4579755555422 1 0 0001 12222322
Q ss_pred cCCCEEEecCCcccCChhHHHHHHHHHHHCCCeE
Q 030024 113 VGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 113 lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (184)
. | -+-.+++++|.++++..|++|-.|
T Consensus 616 ~-------~-VfARvsP~qK~~IV~~lq~~g~vV 641 (917)
T COG0474 616 L-------S-VFARVSPEQKARIVEALQKSGHVV 641 (917)
T ss_pred C-------c-EEEEcCHHHHHHHHHHHHhCCCEE
Confidence 2 2 566889999999999999999887
No 480
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=41.50 E-value=2.3e+02 Score=24.99 Aligned_cols=121 Identities=13% Similarity=0.091 Sum_probs=65.6
Q ss_pred CceeEecCCC--CCCcchhHHHHHHHhhc--ccccEEEeeCccccccChhHHHHHHHHHHhCC---ceecCc----cHHH
Q 030024 25 GVTEMRSPHY--TLSSSHNVLEDIFESMG--QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD---VYVSTG----DWAE 93 (184)
Q Consensus 25 GlT~V~DkG~--s~~~g~~~leDlLe~ag--~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~g---V~v~~G----tlfE 93 (184)
|+|.|+|--- +.......+++.++.+. .|+|+-=.+.++ +.+.+.+.-+ +.+.| +++++. .++
T Consensus 37 G~Ttv~~mpn~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~----~~~~~~el~~-l~~~Gv~g~K~f~~~~~~~~~- 110 (337)
T cd01302 37 GVTTVIDMPNTGPPPIDLPAIELKIKLAEESSYVDFSFHAGIG----PGDVTDELKK-LFDAGINSLKVFMNYYFGELF- 110 (337)
T ss_pred CCcEEEECCCCCCCCCcHHHHHHHHHHhCcCcEeeEEEEEecc----CccCHHHHHH-HHHcCCcEEEEEEeccCCCcc-
Confidence 9999998321 11124567777777764 488886333332 2223555433 35677 565541 110
Q ss_pred HHHHhCCchHHHHHHHHHHcCCCEEEe----------cC---CcccCChhHHHHHHHHHHHCCCeEcccccccc
Q 030024 94 HLIRNGPSAFKEYVEDCKQVGFDTIEL----------NV---GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMF 154 (184)
Q Consensus 94 ~al~qg~~~~~~yl~~~k~lGF~~IEI----------Sd---Gti~i~~~~r~~lI~~~~~~Gf~v~~EvG~K~ 154 (184)
.+ ....+.+-++.++++|...+-= .. -..-++..+-.++|+.+++.|+.|..|+--..
T Consensus 111 -~~--~~~~l~~~~~~~~~~g~~v~~H~Er~~~la~~~g~~l~i~Hiss~~~le~i~~ak~~g~~vt~ev~ph~ 181 (337)
T cd01302 111 -DV--DDGTLMRTFLEIASRGGPVMVHAERAAQLAEEAGANVHIAHVSSGEALELIKFAKNKGVKVTCEVCPHH 181 (337)
T ss_pred -cc--CHHHHHHHHHHHHhcCCeEEEeHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHHHCCCcEEEEcChhh
Confidence 01 1113444444444444332100 00 11244567778999999999999988886653
No 481
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=41.47 E-value=82 Score=28.32 Aligned_cols=123 Identities=11% Similarity=0.040 Sum_probs=68.6
Q ss_pred CceeEecCCCC--CCcchhHHHHHHHhhc--ccccEEEeeCccccccChhHHHHHHHHHHhCCceecCc-cHHH----H-
Q 030024 25 GVTEMRSPHYT--LSSSHNVLEDIFESMG--QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAE----H- 94 (184)
Q Consensus 25 GlT~V~DkG~s--~~~g~~~leDlLe~ag--~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G-tlfE----~- 94 (184)
|+|.|+|---+ .......++..++.+. .|||+.=.++.+.- +.+.+.+... ...|+.+|.. .+-+ .
T Consensus 37 GvTtv~dmPnt~P~~~~~~~~~~~~~~a~~~s~vd~~~~~~~~~~--~~~~~~~l~~--~~~g~k~f~~~~~~~~~~~~~ 112 (344)
T cd01316 37 GFTMVRAMPNTNPSIVDVASLKLVQSLAQAKARCDYAFSIGATST--NAATVGELAS--EAVGLKFYLNETFSTLILDKI 112 (344)
T ss_pred CCeEEEECCCCCCCCCCHHHHHHHHHHhccCcEEeEEEEeeecCC--CHHHHHHHHh--ccCeEEEEECCCCCCCccchH
Confidence 99999994321 1125677788888876 48998744443321 2222444222 1367777752 1111 0
Q ss_pred -----HH---HhC------Cc--hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccccccCC
Q 030024 95 -----LI---RNG------PS--AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK 156 (184)
Q Consensus 95 -----al---~qg------~~--~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG~K~~~ 156 (184)
.+ ..+ .. .+...+..++..|.... ...++..+=.++|+++++.|+.|..|+....--
T Consensus 113 ~~~~~~~~~~~~~~p~~~~~e~~~~~~~l~la~~~g~~lh-----i~HiSt~~~~~~i~~ak~~g~~vt~ev~phhL~ 185 (344)
T cd01316 113 TAWASHFNAWPSTKPIVTHAKSQTLAAVLLLASLHNRSIH-----ICHVSSKEEINLIRLAKARGLKVTCEVSPHHLF 185 (344)
T ss_pred HHHHHHHHhcccCCCeEEehhhHHHHHHHHHHHHHCCCEE-----EEeCCCHHHHHHHHHHHHCCCcEEEEechHHee
Confidence 00 000 00 11133444444444321 234777888899999999999999999876544
No 482
>PRK09045 N-ethylammeline chlorohydrolase; Provisional
Probab=41.46 E-value=2.8e+02 Score=25.28 Aligned_cols=35 Identities=14% Similarity=0.099 Sum_probs=27.4
Q ss_pred ccEEEeeCcccc--ccChhHHHHHHHHHHhCCceecC
Q 030024 54 VDGLKFSGGSHS--LMPKPFIEEVVKRAHQHDVYVST 88 (184)
Q Consensus 54 ID~lKfg~GTs~--l~p~~~L~eKI~l~~~~gV~v~~ 88 (184)
-|.+|.+++-+. .++.+.+++.+++++++|+.+..
T Consensus 184 ~~~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~ 220 (443)
T PRK09045 184 HPLISTAFAPHAPYTVSDENLERIRTLAEQLDLPIHI 220 (443)
T ss_pred CCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 366787765433 45778899999999999998886
No 483
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=41.45 E-value=1.1e+02 Score=29.52 Aligned_cols=97 Identities=12% Similarity=0.124 Sum_probs=64.8
Q ss_pred chhHHHHHHHhhcccc-------------------------cEEEeeCccccccChhHHHHHHHHHHhCCc-eecCc--c
Q 030024 39 SHNVLEDIFESMGQFV-------------------------DGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--D 90 (184)
Q Consensus 39 g~~~leDlLe~ag~yI-------------------------D~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--t 90 (184)
...+.+.+|..+-+++ +++.+.+.| -|..+-.+++++++++|+ .|+.| +
T Consensus 150 ~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEt---RPD~i~~e~L~~L~~~G~~rVslGVQS 226 (522)
T TIGR01211 150 DLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIET---RPDYCREEHIDRMLKLGATRVELGVQT 226 (522)
T ss_pred CHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEE---cCCcCCHHHHHHHHHcCCCEEEEECcc
Confidence 5567777777666554 356766655 556667899999999999 77888 6
Q ss_pred HHHHHHHh---C--CchHHHHHHHHHHcCCCEEEecC-CcccCChhHHHHHHHHHHH
Q 030024 91 WAEHLIRN---G--PSAFKEYVEDCKQVGFDTIELNV-GSLEIPEETLLRYVRLVKS 141 (184)
Q Consensus 91 lfE~al~q---g--~~~~~~yl~~~k~lGF~~IEISd-Gti~i~~~~r~~lI~~~~~ 141 (184)
+-+..+.. | .+.+.+-++.+++.||. |+- =-..+|-++..+.++.++.
T Consensus 227 ~~d~VL~~inRght~~~v~~Ai~~lr~~G~~---v~~~LM~GLPgqt~e~~~~t~~~ 280 (522)
T TIGR01211 227 IYNDILERTKRGHTVRDVVEATRLLRDAGLK---VVYHIMPGLPGSSFERDLEMFRE 280 (522)
T ss_pred CCHHHHHHhCCCCCHHHHHHHHHHHHHcCCe---EEEEeecCCCCCCHHHHHHHHHH
Confidence 77776633 2 12355667778899994 442 2346676666666665555
No 484
>PRK05588 histidinol-phosphatase; Provisional
Probab=41.44 E-value=91 Score=26.31 Aligned_cols=74 Identities=14% Similarity=0.151 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHhCCc--eecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChh--HHHHHHHHHHHCCCe
Q 030024 70 PFIEEVVKRAHQHDV--YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEE--TLLRYVRLVKSAGLK 145 (184)
Q Consensus 70 ~~L~eKI~l~~~~gV--~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~--~r~~lI~~~~~~Gf~ 145 (184)
+.+++-++.+.++|+ .+.++++.- ..... -....++.|+++|...|-|+...-...+= ...+.++.+++.||+
T Consensus 166 ~~~~~il~~~~~~g~~lEINt~~l~~-~~~~~--~~~~~l~~~~~~g~~~i~lgSDAH~~~~vg~~~~~~~~~l~~~G~~ 242 (255)
T PRK05588 166 EIIDEILKVLIEKEKVLEINTRRLDD-KRSVE--NLVKIYKRFYELGGKYITLGSDAHNIEDIGNNFKFALEIAEYCNLK 242 (255)
T ss_pred HHHHHHHHHHHHcCCEEEEECcccCC-CCCCC--CHHHHHHHHHHcCCcEEEEECCCCCHHHHHhhHHHHHHHHHHcCCE
Confidence 457888899999998 455666431 11122 34667889999998877777776554332 356788888999998
Q ss_pred E
Q 030024 146 A 146 (184)
Q Consensus 146 v 146 (184)
+
T Consensus 243 ~ 243 (255)
T PRK05588 243 P 243 (255)
T ss_pred E
Confidence 4
No 485
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=41.21 E-value=91 Score=27.92 Aligned_cols=16 Identities=6% Similarity=-0.053 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhCCcee
Q 030024 71 FIEEVVKRAHQHDVYV 86 (184)
Q Consensus 71 ~L~eKI~l~~~~gV~v 86 (184)
-+|+.++..|+||..+
T Consensus 78 ~~~~l~~~vh~~g~~~ 93 (353)
T cd02930 78 GHRLITDAVHAEGGKI 93 (353)
T ss_pred HHHHHHHHHHHcCCEE
Confidence 3778888899998654
No 486
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=41.18 E-value=1.2e+02 Score=25.92 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=19.8
Q ss_pred HHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHHHHHHHCCCeEcccc
Q 030024 104 KEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYVRLVKSAGLKAKPKF 150 (184)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti---------~i~~~~r~~lI~~~~~~Gf~v~~Ev 150 (184)
.+++++.-+.||++|=++..+. .++.+...++.+..+..|+-+.=|-
T Consensus 124 ~~ll~e~i~~Gf~aiIv~V~~~~L~~~~LGr~l~~e~i~~L~~~~~~~gvdp~GE~ 179 (218)
T PF01902_consen 124 EELLREFIESGFEAIIVKVDADGLDESFLGRELDRELIEELPELNKKYGVDPCGEG 179 (218)
T ss_dssp HHHHHHHHHTT-EEEEEEEESTT--GGGTT-B--HHHHHHHHHHHHHH---TT-TT
T ss_pred HHHHHHHHHCCCeEEEEEEeccCCChHHCCCCccHHHHHHHHHHHhhcCccccCCC
Confidence 3555566666666666544443 2333334444444444455554443
No 487
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=41.08 E-value=70 Score=28.48 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=36.5
Q ss_pred chHHHHHHHHHHcCCCE-EEecCCcccCChhHHHHHHHHHHHCCCeEc
Q 030024 101 SAFKEYVEDCKQVGFDT-IELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (184)
Q Consensus 101 ~~~~~yl~~~k~lGF~~-IEISdGti~i~~~~r~~lI~~~~~~Gf~v~ 147 (184)
+.+.+-+++|-+.|... |=+|.|+ +.++-.++++.+++.|++++
T Consensus 76 ~~v~~~l~e~~~~gvk~avI~s~Gf---~~~~~~~l~~~a~~~girvl 120 (291)
T PRK05678 76 PFAADAILEAIDAGIDLIVCITEGI---PVLDMLEVKAYLERKKTRLI 120 (291)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCC---CHHHHHHHHHHHHHcCCEEE
Confidence 37889999999999987 6779997 34444589999999999985
No 488
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=40.98 E-value=47 Score=29.41 Aligned_cols=71 Identities=14% Similarity=0.244 Sum_probs=43.1
Q ss_pred cccccChhHHHHHHHHHHhCCceecC--ccHHHHHHHhCCchHHHHHHHHHHcCCC--EEEecCCcccCChhHHHHHHHH
Q 030024 63 SHSLMPKPFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFD--TIELNVGSLEIPEETLLRYVRL 138 (184)
Q Consensus 63 Ts~l~p~~~L~eKI~l~~~~gV~v~~--GtlfE~al~qg~~~~~~yl~~~k~lGF~--~IEISdGti~i~~~~r~~lI~~ 138 (184)
..-.|.++.+++.++.|+++||.|.| -+.-..-.... .. .++++. ....+.+.+++..++=.++|+.
T Consensus 75 ~~~~YT~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~--~~-------pel~~~~~~~~~~~~~l~~~~~~t~~f~~~ 145 (326)
T cd06564 75 NDGYYTKEEFKELIAYAKDRGVNIIPEIDSPGHSLAFTK--AM-------PELGLKNPFSKYDKDTLDISNPEAVKFVKA 145 (326)
T ss_pred CCCcccHHHHHHHHHHHHHcCCeEeccCCCcHHHHHHHH--hh-------HHhcCCCcccCCCcccccCCCHHHHHHHHH
Confidence 34567788899999999999999988 23222211111 12 222332 2345677788877766666665
Q ss_pred HHHC
Q 030024 139 VKSA 142 (184)
Q Consensus 139 ~~~~ 142 (184)
+-+.
T Consensus 146 l~~E 149 (326)
T cd06564 146 LFDE 149 (326)
T ss_pred HHHH
Confidence 5443
No 489
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=40.82 E-value=79 Score=26.98 Aligned_cols=88 Identities=10% Similarity=0.124 Sum_probs=58.2
Q ss_pred chhHHHHHHHhhcccccEEEeeCccccccChhHHHHHHHHHHhCCc----------eecCccHHHHHHHhCCchHHHHHH
Q 030024 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV----------YVSTGDWAEHLIRNGPSAFKEYVE 108 (184)
Q Consensus 39 g~~~leDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV----------~v~~GtlfE~al~qg~~~~~~yl~ 108 (184)
.+...+.+|+.-.+. +-.||.++.+++.+++-.+.+-.-.| +|++-+|-| ..- .+.++++
T Consensus 84 s~e~~~~~l~~Ga~k-----vvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~---~~~--~~~e~~~ 153 (232)
T PRK13586 84 DIEKAKRLLSLDVNA-----LVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKE---KSM--EVIDGIK 153 (232)
T ss_pred CHHHHHHHHHCCCCE-----EEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCee---CCC--CHHHHHH
Confidence 334455577764444 46799999999999888777721111 445545755 333 6889999
Q ss_pred HHHHcCCCEEEe----cCCcccCChhHHHHHH
Q 030024 109 DCKQVGFDTIEL----NVGSLEIPEETLLRYV 136 (184)
Q Consensus 109 ~~k~lGF~~IEI----SdGti~i~~~~r~~lI 136 (184)
.+.++|+..|=+ .||+..=++-+..+.+
T Consensus 154 ~l~~~g~~~ii~tdI~~dGt~~G~d~el~~~~ 185 (232)
T PRK13586 154 KVNELELLGIIFTYISNEGTTKGIDYNVKDYA 185 (232)
T ss_pred HHHhcCCCEEEEecccccccCcCcCHHHHHHH
Confidence 999999987766 3677665555544444
No 490
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=40.81 E-value=88 Score=29.69 Aligned_cols=85 Identities=12% Similarity=0.201 Sum_probs=62.4
Q ss_pred EeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHH--------cCCCEEEecCCcccCCh
Q 030024 58 KFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQ--------VGFDTIELNVGSLEIPE 129 (184)
Q Consensus 58 Kfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~--------lGF~~IEISdGti~i~~ 129 (184)
=||||-|-+ |+| ++..+..|.++|+. =.++|.+..-|..+-+..++.+.+ .|.=.+-.=-||-++=+
T Consensus 255 G~GyGGsCf-PKD-~~AL~~~a~~~~~~---~~ll~avv~vN~~qk~~~~~~i~~~~~l~Gk~iavlgLafKpnTDD~Re 329 (414)
T COG1004 255 GFGYGGSCF-PKD-TKALIANAEELGYD---PNLLEAVVEVNERRKDKLAEKILNHLGLKGKTIAVLGLAFKPNTDDMRE 329 (414)
T ss_pred CCCCCCcCC-cHh-HHHHHHHHHhcCCc---hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEEeecCCCccchh
Confidence 378888755 766 99999999999973 258888887664454555544433 33334455678888888
Q ss_pred hHHHHHHHHHHHCCCeEc
Q 030024 130 ETLLRYVRLVKSAGLKAK 147 (184)
Q Consensus 130 ~~r~~lI~~~~~~Gf~v~ 147 (184)
.--+.+|+++++.|-+|+
T Consensus 330 Spa~~vi~~L~~~Ga~V~ 347 (414)
T COG1004 330 SPALDIIKRLQEKGAEVI 347 (414)
T ss_pred chHHHHHHHHHHCCCEEE
Confidence 888999999999999984
No 491
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=40.79 E-value=59 Score=27.29 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=25.1
Q ss_pred cccEEEeeCccccccChhHHHHHHHHHHhCCc
Q 030024 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV 84 (184)
Q Consensus 53 yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV 84 (184)
-+|.+|+|. |.+.+.++..++.++++++
T Consensus 67 ~~~aikiG~----l~~~~~~~~i~~~~~~~~~ 94 (254)
T TIGR00097 67 PVDAAKTGM----LASAEIVEAVARKLREYPV 94 (254)
T ss_pred CCCEEEECC----cCCHHHHHHHHHHHHhcCC
Confidence 589999996 7788899999999999988
No 492
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=40.69 E-value=2.9e+02 Score=29.61 Aligned_cols=96 Identities=13% Similarity=0.115 Sum_probs=68.9
Q ss_pred HHhhcccccEEEeeCccccccChhHHHHHHHHHHhC----CceecCcc----HHHHHHHh--------------CCchHH
Q 030024 47 FESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH----DVYVSTGD----WAEHLIRN--------------GPSAFK 104 (184)
Q Consensus 47 Le~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~----gV~v~~Gt----lfE~al~q--------------g~~~~~ 104 (184)
++.-+++|| +|.+...+..++.+++-+.+..+. +|+++.-| -+|.++.. +..+++
T Consensus 378 ve~GA~iID---Vn~~~~~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~G~~IINsIs~~~g~~~~~ 454 (1178)
T TIGR02082 378 VENGAQILD---INVDYGMLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQGKCIVNSISLKDGEERFI 454 (1178)
T ss_pred HHCCCCEEE---ECCCCCCCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcCCCCEEEeCCCCCCCccHH
Confidence 344456666 588887788888999999999864 88999863 68999975 234788
Q ss_pred HHHHHHHHcCCCEEEecC--CcccCChhHHHH----HHHHHHH-CCCe
Q 030024 105 EYVEDCKQVGFDTIELNV--GSLEIPEETLLR----YVRLVKS-AGLK 145 (184)
Q Consensus 105 ~yl~~~k~lGF~~IEISd--Gti~i~~~~r~~----lI~~~~~-~Gf~ 145 (184)
+.+..|++.|...|=.-- .=+..+.++|.+ +++.+.+ .|+.
T Consensus 455 ~~~~l~~~yga~vV~m~~de~G~p~t~e~r~~i~~~~~~~~~~~~Gi~ 502 (1178)
T TIGR02082 455 ETAKLIKEYGAAVVVMAFDEEGQARTADRKIEICKRAYNILTEKVGFP 502 (1178)
T ss_pred HHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 899999999999987642 225555566654 4555665 6774
No 493
>COG4887 Uncharacterized metal-binding protein conserved in archaea [General function prediction only]
Probab=40.66 E-value=64 Score=27.14 Aligned_cols=81 Identities=17% Similarity=0.124 Sum_probs=63.8
Q ss_pred ccChhHHHHHHHHHHhCCceecC-ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCC
Q 030024 66 LMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 144 (184)
Q Consensus 66 l~p~~~L~eKI~l~~~~gV~v~~-GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf 144 (184)
+.+.++...-++-|++-|....- -.|+|.-......++++-.+.|+.++..-|=|. .-|..++-.+++-..-++||
T Consensus 16 ~c~~d~~~k~~eeY~~enlk~~~~sa~iE~~~ymk~TrlEEIae~ckrm~ykkiGiA---FCigle~EAr~l~~iLsr~f 92 (191)
T COG4887 16 LCDGDQMEKTVEEYRRENLKLFRSSAEIEVEGYMKWTRLEEIAELCKRMVYKKIGIA---FCIGLEEEARALCEILSRGF 92 (191)
T ss_pred CCchHHHHHHHHHHhhhhHHHhhhhhhhhhhhhHHHHhHHHHHHHHHHhhhhhccee---eeeccHHHHHHHHHHHHhcc
Confidence 34567788888999999988876 479998763333489999999999999988663 45667777888999999999
Q ss_pred eEccc
Q 030024 145 KAKPK 149 (184)
Q Consensus 145 ~v~~E 149 (184)
.|.+=
T Consensus 93 EVySV 97 (191)
T COG4887 93 EVYSV 97 (191)
T ss_pred eeeee
Confidence 99653
No 494
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=40.55 E-value=1e+02 Score=26.35 Aligned_cols=49 Identities=27% Similarity=0.369 Sum_probs=29.6
Q ss_pred HHhCCceecC--ccH------HHHHHHhC---CchHHHHHHHHHHcCCCEEEecCCcccC
Q 030024 79 AHQHDVYVST--GDW------AEHLIRNG---PSAFKEYVEDCKQVGFDTIELNVGSLEI 127 (184)
Q Consensus 79 ~~~~gV~v~~--Gtl------fE~al~qg---~~~~~~yl~~~k~lGF~~IEISdGti~i 127 (184)
++..|++|.+ |+| |..++... ..-++.-++.+++.|||.|+|+=.....
T Consensus 69 ~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~ 128 (343)
T PF00704_consen 69 AKNPGVKVLLSIGGWGMSSDGFSQLLSNPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSS 128 (343)
T ss_dssp HHHTT-EEEEEEEETTSSHHHHHHHHHSHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTS
T ss_pred hhccCceEEEEeccccccccccccccccHHHHHHHHHhhhhhhcccCcceeeeeeeeccc
Confidence 5556898765 554 44444211 0137777888899999999996555444
No 495
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=40.54 E-value=2.8e+02 Score=25.01 Aligned_cols=93 Identities=10% Similarity=0.109 Sum_probs=53.0
Q ss_pred ccEEEeeCcc--ccccChhHHHHHHHHHHhCCceecC--cc--HHHHH----HHhCCc----------------hHHHHH
Q 030024 54 VDGLKFSGGS--HSLMPKPFIEEVVKRAHQHDVYVST--GD--WAEHL----IRNGPS----------------AFKEYV 107 (184)
Q Consensus 54 ID~lKfg~GT--s~l~p~~~L~eKI~l~~~~gV~v~~--Gt--lfE~a----l~qg~~----------------~~~~yl 107 (184)
++.+|+..+. ....+.+.+++.++.++++|+.+.. -+ ..+.+ ..+|.. .+...+
T Consensus 145 ~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~~~~v~~H~E~~~~~~~~~~~~~~~G~~~~~~~~~~~p~~~e~~~v~~~~ 224 (454)
T TIGR02033 145 ITSFKVFMAYKNLLMVDDEELFEILKRAKELGALLQVHAENGDVIAELQARLLAQGKTGPEYHALSRPPESEAEAVARAI 224 (454)
T ss_pred CcEEEEEeecCCCCCCCHHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHcCCCChhHhhhcCCHHHHHHHHHHHH
Confidence 3456654332 2235666788888888888887653 22 22211 122310 123335
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeEccccc
Q 030024 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFA 151 (184)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~EvG 151 (184)
+.+..+|.... ..-++..+=.+.|+.+++.|..|..|+.
T Consensus 225 ~~~~~~~~~~~-----i~H~s~~~~~~~i~~~~~~g~~vt~e~~ 263 (454)
T TIGR02033 225 ALAALANAPLY-----VVHVSTASAVDEIAEAREKGQPVYGETC 263 (454)
T ss_pred HHHHHhCCCEE-----EEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 55566665543 3566666656889999999987765654
No 496
>PRK04302 triosephosphate isomerase; Provisional
Probab=40.52 E-value=2.1e+02 Score=23.78 Aligned_cols=74 Identities=19% Similarity=0.156 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHhCCcee--cCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC----Ccc-c---CChhHHHHHHHHH
Q 030024 70 PFIEEVVKRAHQHDVYV--STGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV----GSL-E---IPEETLLRYVRLV 139 (184)
Q Consensus 70 ~~L~eKI~l~~~~gV~v--~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISd----Gti-~---i~~~~r~~lI~~~ 139 (184)
+.+++|++.++++|+.+ |.|+.- . ++.+.++|.+.|.+-. |+- . -+++.-.++++.+
T Consensus 101 ~e~~~~v~~a~~~Gl~~I~~v~~~~---------~----~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~i 167 (223)
T PRK04302 101 ADIEAVVERAKKLGLESVVCVNNPE---------T----SAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAV 167 (223)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCHH---------H----HHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHH
Confidence 34889999999999844 346621 1 1224567888887532 332 2 3355555677777
Q ss_pred HHC--CCeEccccccccCC
Q 030024 140 KSA--GLKAKPKFAVMFNK 156 (184)
Q Consensus 140 ~~~--Gf~v~~EvG~K~~~ 156 (184)
++. ...+..+.|++.++
T Consensus 168 r~~~~~~pvi~GggI~~~e 186 (223)
T PRK04302 168 KKVNPDVKVLCGAGISTGE 186 (223)
T ss_pred HhccCCCEEEEECCCCCHH
Confidence 753 58899999998754
No 497
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=40.50 E-value=78 Score=26.45 Aligned_cols=43 Identities=33% Similarity=0.444 Sum_probs=35.7
Q ss_pred HHHHHHHHHcCCCEEEec-CCcccCChhHHHHHHHHHHHCCCeE
Q 030024 104 KEYVEDCKQVGFDTIELN-VGSLEIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 104 ~~yl~~~k~lGF~~IEIS-dGti~i~~~~r~~lI~~~~~~Gf~v 146 (184)
++.++.++++|||++-+. |=..+-..+-..+.++.+++.|+..
T Consensus 63 ~~~~~~l~~~G~d~~~laNNH~fD~G~~gl~~t~~~l~~a~i~~ 106 (239)
T smart00854 63 PENAAALKAAGFDVVSLANNHSLDYGEEGLLDTLAALDAAGIAH 106 (239)
T ss_pred HHHHHHHHHhCCCEEEeccCcccccchHHHHHHHHHHHHCCCCE
Confidence 677888888999998888 6788888888888888888887765
No 498
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=40.41 E-value=76 Score=26.37 Aligned_cols=44 Identities=30% Similarity=0.419 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCCCEEEec-CCcccCChhHHHHHHHHHHHCCCeE
Q 030024 103 FKEYVEDCKQVGFDTIELN-VGSLEIPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 103 ~~~yl~~~k~lGF~~IEIS-dGti~i~~~~r~~lI~~~~~~Gf~v 146 (184)
=++.++.++++|||++-+. |=..+...+...+.++.+++.|+..
T Consensus 66 ~~~~~~~L~~~G~d~~tlaNNH~fD~G~~gl~~t~~~l~~~~i~~ 110 (239)
T cd07381 66 PPEVADALKAAGFDVVSLANNHTLDYGEEGLLDTLDALDEAGIAH 110 (239)
T ss_pred CHHHHHHHHHhCCCEEEcccccccccchHHHHHHHHHHHHcCCce
Confidence 3677888888999998886 7788888888888888888888775
No 499
>PRK08185 hypothetical protein; Provisional
Probab=40.34 E-value=1.2e+02 Score=27.07 Aligned_cols=87 Identities=18% Similarity=0.260 Sum_probs=54.8
Q ss_pred EEEeeCccccccChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHH-
Q 030024 56 GLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLR- 134 (184)
Q Consensus 56 ~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~- 134 (184)
+|-++-|+...++.+...--.++++++.|+|.. -|-++ .=.+.++.|-+.||+.|=+..-. +|.++-.+
T Consensus 41 Il~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~l------HLDHg--~~~e~i~~ai~~Gf~SVM~D~S~--l~~eeNi~~ 110 (283)
T PRK08185 41 IIAIHPNELDFLGDNFFAYVRERAKRSPVPFVI------HLDHG--ATIEDVMRAIRCGFTSVMIDGSL--LPYEENVAL 110 (283)
T ss_pred EEEeCcchhhhccHHHHHHHHHHHHHCCCCEEE------ECCCC--CCHHHHHHHHHcCCCEEEEeCCC--CCHHHHHHH
Confidence 344555555445555555556677777777764 01111 11244556778999999887554 56666554
Q ss_pred ---HHHHHHHCCCeEcccccc
Q 030024 135 ---YVRLVKSAGLKAKPKFAV 152 (184)
Q Consensus 135 ---lI~~~~~~Gf~v~~EvG~ 152 (184)
+++.+...|..|--|+|.
T Consensus 111 t~~vv~~a~~~gv~vE~ElG~ 131 (283)
T PRK08185 111 TKEVVELAHKVGVSVEGELGT 131 (283)
T ss_pred HHHHHHHHHHcCCeEEEEEee
Confidence 455556789999999988
No 500
>PLN02428 lipoic acid synthase
Probab=40.27 E-value=67 Score=29.56 Aligned_cols=20 Identities=15% Similarity=0.365 Sum_probs=9.8
Q ss_pred CChhHHHHHHHHHHHCCCeE
Q 030024 127 IPEETLLRYVRLVKSAGLKA 146 (184)
Q Consensus 127 i~~~~r~~lI~~~~~~Gf~v 146 (184)
=+.+++.++++.+++.|+..
T Consensus 259 ET~Edv~e~l~~Lrelgvd~ 278 (349)
T PLN02428 259 ETDEEVVQTMEDLRAAGVDV 278 (349)
T ss_pred CCHHHHHHHHHHHHHcCCCE
Confidence 34445555555555555444
Done!