BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030025
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 228 bits (582), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 103/184 (55%), Positives = 132/184 (71%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M +H+T+ ++KILE Y GFE +K LVDVGG G + I SKYP IKGINFDLPHVI+ +
Sbjct: 180 MSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDA 239
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
P YPGV+HVGGDMF S+P DA+ +KWI HDWSDEHCLK LKNC++++P+ GKVIV E +
Sbjct: 240 PSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECI 299
Query: 121 LPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVM 180
LP P++ +K DV+++ PGGKERT+ EF LA AGF G + C N ++M
Sbjct: 300 LPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIM 359
Query: 181 EFYK 184
EF K
Sbjct: 360 EFLK 363
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 216 bits (549), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 95/184 (51%), Positives = 131/184 (71%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M NH+ ++ +K+LE Y GFE + LVDVGG +G T+ AI + YP IKG+NFDLPHVI +
Sbjct: 181 MKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEA 240
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
P++PGV HVGGDMF+ VP+GD IL+KWILHDWSD+HC LLKNC+ ++P GKV++V+ +
Sbjct: 241 PQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCI 300
Query: 121 LPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVM 180
LP PE S+ D++++ PGG+ER + EF LA AGF+G++ + N W +
Sbjct: 301 LPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAI 360
Query: 181 EFYK 184
EF K
Sbjct: 361 EFTK 364
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 214 bits (546), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 98/184 (53%), Positives = 125/184 (67%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M +++T+ ++KILE Y GFE + +VDVGG G I +KYP I INFDLPHVIQ +
Sbjct: 183 MSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDA 242
Query: 61 PEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
P + GV+H+GGDMF VP GDAI IKWI HDWSDEHCLKLLKNC+ ++P+ GKVIV E +
Sbjct: 243 PAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYI 302
Query: 121 LPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVM 180
LP P+ +K+ D L++ PGGKERT+ EF LA +GF G + N +VM
Sbjct: 303 LPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVM 362
Query: 181 EFYK 184
EF K
Sbjct: 363 EFLK 366
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 191 bits (486), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 91/177 (51%), Positives = 123/177 (69%), Gaps = 2/177 (1%)
Query: 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKH 68
++++LE Y GFE I LVDVGG G L+ I SKYP IKGINFDLP VI+++P G++H
Sbjct: 197 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEH 256
Query: 69 VGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENG 128
VGGDMF SVP GDA+++K + H+WSDE C++ L NCHK++ GKVI+VE +LPE P
Sbjct: 257 VGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTS 316
Query: 129 THSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVC-FFHNLWVMEFYK 184
SK+ S D L+ GG+ERT+ ++ L+ +GFS + C F++L VMEFYK
Sbjct: 317 EESKLVSTLDNLMFITV-GGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 182 bits (462), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 89/176 (50%), Positives = 117/176 (66%), Gaps = 2/176 (1%)
Query: 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHV 69
++ LE Y GFE I LVDVGG G L+ I SKYP IKGINFDLP VI+++P G++HV
Sbjct: 198 KRXLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHV 257
Query: 70 GGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGT 129
GGD F SVP GDA ++K + H+WSDE C++ L NCHK++ GKVI+VE +LPE P
Sbjct: 258 GGDXFASVPQGDAXILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSE 317
Query: 130 HSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVC-FFHNLWVMEFYK 184
SK+ S D L GG+ERT+ ++ L+ +GFS + C F++L V EFYK
Sbjct: 318 ESKLVSTLDNLXFITV-GGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVXEFYK 372
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 99/168 (58%), Gaps = 5/168 (2%)
Query: 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQSVP 78
F+ ++ +VDVGG G T K I +P +K I FD P V+++ + +VGGDMF S+P
Sbjct: 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIP 245
Query: 79 NGDAILIKWILHDWSDEHCLKLLKNCHKSIP---EGGKVIVVESVLPELPENGTHSKINS 135
N DA+L+K+ILH+W+D+ CL++LK C +++ + GKV +++ V+ + + ++I
Sbjct: 246 NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKL 305
Query: 136 LADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVMEFY 183
L DV + GKER + E+ L EAGF + L ++E Y
Sbjct: 306 LMDVNMACL--NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 117 bits (293), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 97/168 (57%), Gaps = 5/168 (2%)
Query: 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQSVP 78
FE ++ +VDVGG G T K I +P + + FD P V+++ + +VGGDMF SVP
Sbjct: 191 FEGLESIVDVGGGNGTTGKIICETFPKLTCVVFDRPKVVENLCGSNNLTYVGGDMFISVP 250
Query: 79 NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEG---GKVIVVESVLPELPENGTHSKINS 135
DA+L+K +LHDW+D+ C+K+LK C +++ GKVIV++ V+ E + ++I
Sbjct: 251 KADAVLLKAVLHDWTDKDCIKILKKCKEAVTSDGKRGKVIVIDMVINEKKDENQLTQIKL 310
Query: 136 LADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVMEFY 183
L +V + GKER + E+ L EAGF + F + ++E Y
Sbjct: 311 LMNVTI--SCVNGKERNEEEWKKLFIEAGFQDYKISPFTGLMSLIEIY 356
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 97/168 (57%), Gaps = 5/168 (2%)
Query: 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQSVP 78
F+ ++ +VDVGG G T K I +P +K I FD P V+++ + +VGGD F S+P
Sbjct: 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDXFTSIP 245
Query: 79 NGDAILIKWILHDWSDEHCLKLLKNCHKSIP---EGGKVIVVESVLPELPENGTHSKINS 135
N DA+L+K+ILH+W+D+ CL++LK C +++ + GKV +++ V+ + + ++I
Sbjct: 246 NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDXVIDKKKDENQVTQIKL 305
Query: 136 LADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVMEFY 183
L D V GKER + E+ L EAGF + L ++E Y
Sbjct: 306 LXD--VNXACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 351
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 7/166 (4%)
Query: 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGV 66
LVLQ E + FE ++ LVDVGG G K I +PH+K FD P V+ + +
Sbjct: 181 LVLQ---ENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENL 237
Query: 67 KHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIP---EGGKVIVVESVLPE 123
VGGDMF+S+P+ DA+L+KW+LHDW+DE LK+LKN ++I + GKVI+++ + E
Sbjct: 238 NFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDE 297
Query: 124 LPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIR 169
++ +++ D++++T + GKERTK E+ L +AGFS +
Sbjct: 298 TSDDRGLTELQLDYDLVMLTMFL-GKERTKQEWEKLIYDAGFSSYK 342
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 114 bits (284), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 7/166 (4%)
Query: 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGV 66
LVLQ E + FE ++ LVDVGG G K I +PH+K FD P V+ + +
Sbjct: 178 LVLQ---ENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENL 234
Query: 67 KHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIP---EGGKVIVVESVLPE 123
VGGDMF+S+P+ DA+L+KW+LHDW+DE LK+LKN ++I + GKVI+++ + E
Sbjct: 235 NFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDE 294
Query: 124 LPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIR 169
++ +++ D++++T + GKERTK E+ L +AGFS +
Sbjct: 295 TSDDRGLTELQLDYDLVMLTMFL-GKERTKQEWEKLIYDAGFSSYK 339
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 114 bits (284), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 7/166 (4%)
Query: 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGV 66
LVLQ E + FE ++ LVDVGG G K I +PH+K FD P V+ + +
Sbjct: 182 LVLQ---ENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENL 238
Query: 67 KHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIP---EGGKVIVVESVLPE 123
VGGDMF+S+P+ DA+L+KW+LHDW+DE LK+LKN ++I + GKVI+++ + E
Sbjct: 239 NFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDE 298
Query: 124 LPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIR 169
++ +++ D++++T + GKERTK E+ L +AGFS +
Sbjct: 299 TSDDRGLTELQLDYDLVMLTMFL-GKERTKQEWEKLIYDAGFSSYK 343
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 83/166 (50%), Gaps = 12/166 (7%)
Query: 12 ILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVI-QHSPEYPGV---- 66
IL F + DVGG G L + ++P ++G+ D V+ +H + P V
Sbjct: 175 ILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRW 234
Query: 67 KHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPE 126
K V GD + VP+ D ++K ILH+W DE +++L NC + P G+V+V+++V+PE
Sbjct: 235 KVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVXPAHGRVLVIDAVVPE--G 292
Query: 127 NGTH-SKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFV 171
N H SK + T G+ERT E L T AG R V
Sbjct: 293 NDAHQSKEXDFXXLAART----GQERTAAELEPLFTAAGLRLDRVV 334
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 89/174 (51%), Gaps = 12/174 (6%)
Query: 1 MYNHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHS 60
M L + +AY + ++ ++DVGG G L AI + PH++G +L + +
Sbjct: 163 MSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERA 221
Query: 61 PEY-------PGVKHVGGDMFQSVP-NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGG 112
V GD F+ +P D +L+ ++L +WSDE L +L+ C +++ GG
Sbjct: 222 RRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGG 281
Query: 113 KVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFS 166
+++V++ ++ +G ++L D+ ++T + GG+ RT+ E LA AG +
Sbjct: 282 RLLVLDRA--DVEGDGADRFFSTLLDLRMLT-FMGGRVRTRDEVVDLAGSAGLA 332
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 11/153 (7%)
Query: 25 LVDVGGSLGNTLKAITSKYPHIKGINFDLPHVI----QHSP--EYPGVKHVGGDMFQS-V 77
+ D+GG G K S YP K FD+P V+ QH E + GD F+ +
Sbjct: 183 MCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL 242
Query: 78 PNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLA 137
P D ++ +LHDW+D C LL+ + + GG ++V+ES+L E +++ SL
Sbjct: 243 PEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSL- 301
Query: 138 DVLVMTQYPGGKERTKHEFTTLATEAGFSGIRF 170
++LV T+ G+ERT + L + AGF +F
Sbjct: 302 NMLVQTE---GQERTPTHYHMLLSSAGFRDFQF 331
>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDS|B Chain B, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDU|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With Sinefungin (Sfg)
Length = 374
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 85/161 (52%), Gaps = 12/161 (7%)
Query: 14 EAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-------PGV 66
+AY + ++ ++DVGG G L AI + PH++G +L + + V
Sbjct: 176 DAYD-WSAVRHVLDVGGGNGGXLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRV 234
Query: 67 KHVGGDMFQSVP-NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELP 125
GD F+ +P D +L+ ++L +WSDE L +L+ C +++ GG+++V++ ++
Sbjct: 235 TVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA--DVE 292
Query: 126 ENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFS 166
+G ++L D+ +T + GG+ RT+ E LA AG +
Sbjct: 293 GDGADRFFSTLLDLRXLT-FXGGRVRTRDEVVDLAGSAGLA 332
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 78/163 (47%), Gaps = 15/163 (9%)
Query: 11 KILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVG 70
++ AY F VD+GG G+ A+ +P ++G + P V + + E + +
Sbjct: 193 QVAAAYD-FSGAATAVDIGGGRGSLXAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLA 251
Query: 71 -------GDMFQSVPNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLP 122
GD F+++P+G D LIK +LHDW D+ +++L+ + +++V+++++
Sbjct: 252 DRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAXKPDSRLLVIDNLID 311
Query: 123 ELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGF 165
E P T + GG ER++ EF L ++G
Sbjct: 312 ERPAASTLFVDLL------LLVLVGGAERSESEFAALLEKSGL 348
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 72/158 (45%), Gaps = 15/158 (9%)
Query: 23 KQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-------PGVKHVGGDMFQ 75
+ VDVGG G KAI P +G+ D + + + V VGGDM Q
Sbjct: 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQ 228
Query: 76 SVP-NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKIN 134
VP NGD L+ I+ D + L+LL NC +++ G+V+V+E + S ++
Sbjct: 229 EVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISA----SEPSPMS 284
Query: 135 SLADV-LVMTQYPGGKERTKHEFTTLATEAGFSGIRFV 171
L DV L M G+ RT E L GF+ R V
Sbjct: 285 VLWDVHLFMA--CAGRHRTTEEVVDLLGRGGFAVERIV 320
>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW2|B Chain B, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW3|A Chain A, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
pdb|1TW3|B Chain B, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
Length = 360
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 12/153 (7%)
Query: 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-------PGVKHVGGDM 73
+++ ++DVGG G AI + PH+ ++ + + Y V V GD
Sbjct: 183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDF 242
Query: 74 FQSVPN-GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSK 132
F+ +P DAI++ ++L +W D +++L C +++ GG++++ E +L EN + +
Sbjct: 243 FEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER--DDLHENSFNEQ 300
Query: 133 INSLADVLVMTQYPGGKERTKHEFTTLATEAGF 165
L L M + GG RT+ ++ LA AG
Sbjct: 301 FTELD--LRMLVFLGGALRTREKWDGLAASAGL 331
>pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I53|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I58|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I58|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I5U|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I5U|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I64|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
pdb|3I64|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
Length = 332
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 71 GDMFQSVPNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGT 129
G F +P G ++ +LHDW D + +L+ C ++ GG V+V+E+V + GT
Sbjct: 226 GSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGD-EHAGT 284
Query: 130 HSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFS 166
+ M Y GGKER+ E LA +AG +
Sbjct: 285 GMDLR-------MLTYFGGKERSLAELGELAAQAGLA 314
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 65/133 (48%), Gaps = 10/133 (7%)
Query: 3 NHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPE 62
++ +Q +LE K + +K+++DVGG +G+ A+ +P + +LP I E
Sbjct: 173 SNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNE 231
Query: 63 YPGVKHVGGDMF--------QSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKV 114
K V M +S P DA+L IL+ +++ + K ++ GG++
Sbjct: 232 NAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRL 291
Query: 115 IVVESVLPELPEN 127
++++ V+ + PEN
Sbjct: 292 LILDMVIDD-PEN 303
>pdb|3DP7|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase From
Bacteroides Vulgatus Atcc 8482
pdb|3DP7|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 363
Score = 33.5 bits (75), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQ----HSPEYPGVKHVGG----- 71
H K+L+D+GG+ G ++ DLP ++ + G + + G
Sbjct: 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANL 238
Query: 72 -DMFQSVPNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120
D P G DA+ + L +S+E + +L +SI + KV ++E++
Sbjct: 239 LDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETL 289
>pdb|2R3S|A Chain A, Crystal Structure Of A Putative O-methyltransferase
(npun_r0239) From Nostoc Punctiforme Pcc 73102 At 2.15 A
Resolution
pdb|2R3S|B Chain B, Crystal Structure Of A Putative O-methyltransferase
(npun_r0239) From Nostoc Punctiforme Pcc 73102 At 2.15 A
Resolution
Length = 335
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 16/154 (10%)
Query: 24 QLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVG-------GDMFQS 76
+++D+ S G A+ P+ + D V++ + E ++ V G F+
Sbjct: 168 KVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFE- 226
Query: 77 VPNG---DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKI 133
V G D +L+ LH + C +LL+ ++ GKVIV + + P + +
Sbjct: 227 VDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFI----PNSDRITPP 282
Query: 134 NSLADVLV-MTQYPGGKERTKHEFTTLATEAGFS 166
++ A LV + P G T E+ + + AGFS
Sbjct: 283 DAAAFSLVXLATTPNGDAYTFAEYESXFSNAGFS 316
>pdb|2EX4|A Chain A, Crystal Structure Of Human Methyltransferase Ad-003 In
Complex With S-adenosyl-l-homocysteine
pdb|2EX4|B Chain B, Crystal Structure Of Human Methyltransferase Ad-003 In
Complex With S-adenosyl-l-homocysteine
Length = 241
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123
D I I+W++ +D+H + L+ C S+ G +++ +++ E
Sbjct: 148 DVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE 190
>pdb|4EKJ|A Chain A, Crystal Structure Of A Monomeric Beta-xylosidase From
Caulobacter Crescentus Cb15
Length = 500
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 133 INSLADVLVMTQYPGG--KERTKHEFTTLATEAGFSGIRFVCFFHNL 177
++ D+ + + YPG +E ++ + T E GF IRF FH++
Sbjct: 22 VDRFFDLSIGSDYPGTLIREDSQAQLKTTVDELGFRYIRFHAIFHDV 68
>pdb|2JFQ|A Chain A, Crystal Structure Of Staphylococcus Aureus Glutamate
Racemase In Complex With D-Glutamate
pdb|2JFQ|B Chain B, Crystal Structure Of Staphylococcus Aureus Glutamate
Racemase In Complex With D-Glutamate
Length = 286
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 45 HIKGINFDLPHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNC 104
HIK IN PHV H PG + M S P +I+I L W + ++ C
Sbjct: 148 HIKRIN---PHVEVHGVACPGFVPLVEQMRYSDPTITSIVIHQTLKRWRNSESDTVILGC 204
Query: 105 ------HKSIPE--GGKVIVVESVL 121
+K I + GGK V+ S L
Sbjct: 205 THYPLLYKPIYDYFGGKKTVISSGL 229
>pdb|3M1T|A Chain A, Crystal Structure Of Putative Phosphohydrolase
(Yp_929327.1) From Shewanella Amazonensis Sb2b At 1.62
A Resolution
Length = 275
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 4 HTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPH 45
H+ +LQK+ E + + I +L+DV + +T+KA++ K H
Sbjct: 3 HSAALLQKVDELPRLPKAIAELLDVVNNEDSTVKAVSEKLSH 44
>pdb|4FJ6|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 33,
Candidate Sialidase (Bdi_2946) From Parabacteroides
Distasonis Atcc 8503 At 1.90 A Resolution
pdb|4FJ6|B Chain B, Crystal Structure Of A Glycoside Hydrolase Family 33,
Candidate Sialidase (Bdi_2946) From Parabacteroides
Distasonis Atcc 8503 At 1.90 A Resolution
pdb|4FJ6|C Chain C, Crystal Structure Of A Glycoside Hydrolase Family 33,
Candidate Sialidase (Bdi_2946) From Parabacteroides
Distasonis Atcc 8503 At 1.90 A Resolution
pdb|4FJ6|D Chain D, Crystal Structure Of A Glycoside Hydrolase Family 33,
Candidate Sialidase (Bdi_2946) From Parabacteroides
Distasonis Atcc 8503 At 1.90 A Resolution
Length = 523
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHV 69
+K LE+Y ++Q +V L T+K +TSK P +KGIN+ IQ PE + V
Sbjct: 87 RKALESYS----VRQ-DEVTAPLSRTVK-LTSKQPXLKGINY-FWVSIQXKPETSLLAKV 139
Query: 70 GGDMFQSVPNGDAILIKW 87
+ N I I W
Sbjct: 140 ATTXPNAQINNKPINITW 157
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 27.3 bits (59), Expect = 4.3, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 21/91 (23%)
Query: 103 NCHKSIPEGGKV--IVVESVLPELPENGTHSKINSLADVL----VMTQYPGG-------- 148
NC + P G ++ ++V ++ P H + L VL VM Y G
Sbjct: 1458 NCLRKEPGGHRIRCVLVSNLSSTSPAPEMHPSSSELQKVLQGDLVMNVYRDGAWGAFRHF 1517
Query: 149 -------KERTKHEFTTLATEAGFSGIRFVC 172
+++T+H F + + S IR+VC
Sbjct: 1518 PLEQDRPEKQTEHAFVNVLSRGDLSSIRWVC 1548
>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|B Chain B, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|C Chain C, Human Trka In Complex With The Inhibitor Az-23
Length = 329
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 83 ILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVM 142
I++KW L + + L CH +PE K++V L E E+ A++L M
Sbjct: 43 IVLKWELGEGAFGKVF--LAECHNLLPEQDKMLVAVKALKEASES-ARQDFQREAELLTM 99
Query: 143 TQY 145
Q+
Sbjct: 100 LQH 102
>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka
pdb|4F0I|B Chain B, Crystal Structure Of Apo Trka
Length = 300
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 83 ILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVM 142
I++KW L + + L CH +PE K++V L E E+ A++L M
Sbjct: 14 IVLKWELGEGAFGKVF--LAECHNLLPEQDKMLVAVKALKEASESARQD-FQREAELLTM 70
Query: 143 TQY 145
Q+
Sbjct: 71 LQH 73
>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain
Length = 306
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 83 ILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVM 142
I++KW L + + L CH +PE K++V L E E+ A++L M
Sbjct: 20 IVLKWELGEGAFGKVF--LAECHNLLPEQDKMLVAVKALKEASESARQD-FQREAELLTM 76
Query: 143 TQY 145
Q+
Sbjct: 77 LQH 79
>pdb|3G07|A Chain A, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|B Chain B, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|C Chain C, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|D Chain D, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|E Chain E, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|F Chain F, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
Length = 292
Score = 26.2 bits (56), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 84 LIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPEN-GTHSKINSLADVLVM 142
L KW+ +W DE + + ++ + GG ++V+E P+ ++ K +L + +
Sbjct: 186 LTKWVHLNWGDEGLKRXFRRIYRHLRPGG-ILVLE------PQPWSSYGKRKTLTETIYK 238
Query: 143 TQYPGGKERTKHEFTTLAT--EAGFSGIRFVCFFHN 176
Y + +F++ T + GFS V HN
Sbjct: 239 NYY--RIQLKPEQFSSYLTSPDVGFSSYELVATPHN 272
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,459,232
Number of Sequences: 62578
Number of extensions: 280271
Number of successful extensions: 681
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 633
Number of HSP's gapped (non-prelim): 38
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)