Query 030025
Match_columns 184
No_of_seqs 119 out of 1631
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 07:21:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030025.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030025hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3178 Hydroxyindole-O-methyl 99.9 6.6E-27 1.4E-31 175.7 14.6 181 4-184 160-342 (342)
2 PF00891 Methyltransf_2: O-met 99.9 4.2E-26 9.1E-31 169.1 11.6 150 10-161 90-241 (241)
3 TIGR02716 C20_methyl_CrtF C-20 99.9 8E-25 1.7E-29 167.5 15.1 160 7-171 136-305 (306)
4 COG2226 UbiE Methylase involve 99.9 2.5E-24 5.3E-29 156.7 16.1 175 5-183 36-236 (238)
5 PF01209 Ubie_methyltran: ubiE 99.9 7.3E-25 1.6E-29 160.7 7.6 169 7-184 34-233 (233)
6 PLN02233 ubiquinone biosynthes 99.9 6.4E-23 1.4E-27 153.4 16.5 166 10-178 63-254 (261)
7 PTZ00098 phosphoethanolamine N 99.9 2.7E-22 5.8E-27 150.2 17.0 158 7-174 39-204 (263)
8 TIGR00740 methyltransferase, p 99.9 2.1E-23 4.5E-28 154.5 10.0 152 20-176 52-231 (239)
9 PRK15451 tRNA cmo(5)U34 methyl 99.9 3.1E-23 6.8E-28 154.1 9.5 152 20-173 55-231 (247)
10 TIGR02752 MenG_heptapren 2-hep 99.9 5E-22 1.1E-26 146.4 15.5 173 7-184 32-231 (231)
11 PLN02244 tocopherol O-methyltr 99.9 9E-22 1.9E-26 152.4 17.3 163 6-173 99-279 (340)
12 PRK14103 trans-aconitate 2-met 99.9 4.2E-22 9.1E-27 148.8 14.3 156 7-169 16-181 (255)
13 COG2230 Cfa Cyclopropane fatty 99.9 1.3E-21 2.8E-26 144.9 12.9 161 5-174 57-225 (283)
14 PLN02490 MPBQ/MSBQ methyltrans 99.9 1.3E-20 2.9E-25 144.4 16.9 154 5-174 97-258 (340)
15 PF02353 CMAS: Mycolic acid cy 99.9 4.8E-21 1E-25 143.5 13.0 165 5-174 47-219 (273)
16 COG4106 Tam Trans-aconitate me 99.9 3.8E-21 8.2E-26 135.3 10.5 169 9-184 19-203 (257)
17 PLN02336 phosphoethanolamine N 99.9 2.2E-20 4.8E-25 150.9 16.1 153 8-173 254-415 (475)
18 TIGR00452 methyltransferase, p 99.9 4.8E-20 1E-24 140.3 16.5 155 9-173 110-274 (314)
19 PF13489 Methyltransf_23: Meth 99.9 1.6E-20 3.4E-25 130.7 12.2 136 19-169 20-160 (161)
20 PRK15068 tRNA mo(5)U34 methylt 99.9 2.9E-20 6.3E-25 142.7 14.5 155 9-173 111-275 (322)
21 PLN02396 hexaprenyldihydroxybe 99.8 5.8E-21 1.3E-25 145.9 10.4 149 21-173 131-290 (322)
22 PRK00216 ubiE ubiquinone/menaq 99.8 2.1E-19 4.6E-24 132.8 17.1 172 7-184 38-238 (239)
23 smart00828 PKS_MT Methyltransf 99.8 7.1E-20 1.5E-24 134.3 13.4 136 23-174 1-146 (224)
24 PRK11207 tellurite resistance 99.8 1.6E-19 3.5E-24 129.9 14.8 142 9-171 19-169 (197)
25 PRK01683 trans-aconitate 2-met 99.8 1.4E-19 3.1E-24 135.5 14.7 108 8-118 19-130 (258)
26 PRK08317 hypothetical protein; 99.8 3E-19 6.5E-24 131.9 16.3 162 6-172 5-176 (241)
27 KOG1540 Ubiquinone biosynthesi 99.8 7.7E-20 1.7E-24 131.7 12.5 157 7-169 87-278 (296)
28 PRK11036 putative S-adenosyl-L 99.8 8.3E-20 1.8E-24 136.4 11.9 158 10-173 35-208 (255)
29 TIGR01934 MenG_MenH_UbiE ubiqu 99.8 7.7E-19 1.7E-23 128.5 15.8 169 7-184 26-223 (223)
30 PRK11873 arsM arsenite S-adeno 99.8 5.3E-19 1.1E-23 133.3 15.0 145 19-172 75-230 (272)
31 PF12847 Methyltransf_18: Meth 99.8 5.5E-20 1.2E-24 120.7 7.9 98 21-118 1-111 (112)
32 TIGR02072 BioC biotin biosynth 99.8 1.2E-18 2.6E-23 128.7 15.0 151 6-171 17-175 (240)
33 PF13847 Methyltransf_31: Meth 99.8 1.9E-20 4.2E-25 129.5 4.8 99 20-120 2-112 (152)
34 TIGR00477 tehB tellurite resis 99.8 2.3E-18 5.1E-23 123.7 14.4 142 9-171 19-168 (195)
35 PRK10258 biotin biosynthesis p 99.8 3.6E-18 7.8E-23 127.4 15.4 152 4-167 26-182 (251)
36 KOG1270 Methyltransferases [Co 99.8 6E-19 1.3E-23 127.8 8.4 155 9-172 71-249 (282)
37 PRK06202 hypothetical protein; 99.8 1.5E-17 3.2E-22 122.7 15.7 146 19-173 58-223 (232)
38 PF08241 Methyltransf_11: Meth 99.8 4.5E-19 9.8E-24 112.6 6.5 88 26-116 1-95 (95)
39 PRK11705 cyclopropane fatty ac 99.8 1.1E-17 2.4E-22 131.2 15.3 155 8-173 155-313 (383)
40 PRK08287 cobalt-precorrin-6Y C 99.8 1.1E-17 2.5E-22 119.4 13.8 131 7-172 18-156 (187)
41 PRK05785 hypothetical protein; 99.8 1.6E-17 3.5E-22 121.8 14.6 163 8-184 37-224 (226)
42 TIGR02021 BchM-ChlM magnesium 99.8 1.3E-17 2.9E-22 121.9 13.5 159 8-175 41-209 (219)
43 COG2227 UbiG 2-polyprenyl-3-me 99.8 5.7E-19 1.2E-23 126.9 5.6 143 21-173 59-216 (243)
44 PLN02336 phosphoethanolamine N 99.8 1.4E-17 3.1E-22 134.6 14.0 147 6-169 23-179 (475)
45 TIGR03587 Pse_Me-ase pseudamin 99.8 1.8E-17 3.9E-22 119.6 12.9 104 19-124 41-148 (204)
46 PRK04266 fibrillarin; Provisio 99.8 1E-16 2.2E-21 117.2 16.9 135 15-175 67-213 (226)
47 PF08242 Methyltransf_12: Meth 99.8 6.8E-19 1.5E-23 113.1 3.8 87 26-114 1-99 (99)
48 PRK12335 tellurite resistance 99.7 5.7E-17 1.2E-21 123.1 14.3 141 10-171 110-258 (287)
49 TIGR00537 hemK_rel_arch HemK-r 99.7 1.1E-16 2.4E-21 113.6 14.3 141 12-184 11-177 (179)
50 PF06080 DUF938: Protein of un 99.7 1.6E-16 3.6E-21 112.6 14.5 162 20-184 23-204 (204)
51 smart00138 MeTrc Methyltransfe 99.7 3.8E-17 8.3E-22 122.4 11.9 101 19-119 97-243 (264)
52 PF13649 Methyltransf_25: Meth 99.7 3.6E-18 7.7E-23 110.1 5.3 88 25-112 1-101 (101)
53 PF08003 Methyltransf_9: Prote 99.7 8E-17 1.7E-21 119.9 11.9 152 10-173 105-268 (315)
54 TIGR03438 probable methyltrans 99.7 1E-16 2.2E-21 122.4 12.8 106 9-117 54-176 (301)
55 KOG2361 Predicted methyltransf 99.7 3.2E-17 6.9E-22 117.4 8.4 145 24-170 74-235 (264)
56 PRK07580 Mg-protoporphyrin IX 99.7 1.9E-16 4.1E-21 116.5 12.8 157 9-174 49-216 (230)
57 KOG4300 Predicted methyltransf 99.7 4.5E-17 9.8E-22 114.1 8.4 146 20-175 75-235 (252)
58 PRK00107 gidB 16S rRNA methylt 99.7 1.3E-15 2.8E-20 108.3 15.6 118 19-172 43-169 (187)
59 TIGR00138 gidB 16S rRNA methyl 99.7 2.9E-16 6.4E-21 111.3 12.1 91 21-117 42-141 (181)
60 PRK05134 bifunctional 3-demeth 99.7 2.5E-16 5.3E-21 116.3 11.3 157 11-172 39-205 (233)
61 PRK06922 hypothetical protein; 99.7 2.1E-16 4.5E-21 128.7 11.6 104 19-122 416-541 (677)
62 PRK15001 SAM-dependent 23S rib 99.7 8E-16 1.7E-20 119.8 14.1 109 9-118 217-340 (378)
63 TIGR03840 TMPT_Se_Te thiopurin 99.7 3.3E-15 7.1E-20 108.4 15.6 140 10-171 24-186 (213)
64 PLN02585 magnesium protoporphy 99.7 7.6E-16 1.6E-20 117.5 12.5 156 7-175 128-302 (315)
65 PF05401 NodS: Nodulation prot 99.7 1.2E-16 2.6E-21 112.1 7.3 136 14-173 37-180 (201)
66 PTZ00146 fibrillarin; Provisio 99.7 1.8E-14 3.9E-19 107.9 18.5 146 4-174 113-273 (293)
67 TIGR02469 CbiT precorrin-6Y C5 99.7 1.7E-15 3.7E-20 100.8 11.5 106 6-117 5-121 (124)
68 PRK09489 rsmC 16S ribosomal RN 99.7 8.2E-15 1.8E-19 113.3 16.2 110 9-119 185-304 (342)
69 PF03848 TehB: Tellurite resis 99.7 1.2E-15 2.6E-20 108.1 10.1 142 9-171 19-168 (192)
70 TIGR01983 UbiG ubiquinone bios 99.7 1.8E-15 4E-20 110.9 11.2 143 21-173 45-204 (224)
71 TIGR03534 RF_mod_PrmC protein- 99.6 5.7E-15 1.2E-19 110.0 13.1 137 6-174 74-243 (251)
72 PRK00121 trmB tRNA (guanine-N( 99.6 1E-15 2.2E-20 110.5 8.2 98 21-118 40-156 (202)
73 PF05891 Methyltransf_PK: AdoM 99.6 1.9E-15 4.2E-20 107.7 9.3 150 10-174 39-203 (218)
74 PLN03075 nicotianamine synthas 99.6 3.4E-15 7.3E-20 112.1 10.5 105 12-118 115-233 (296)
75 TIGR02081 metW methionine bios 99.6 3.3E-14 7.2E-19 102.1 15.2 154 10-173 5-168 (194)
76 PRK13255 thiopurine S-methyltr 99.6 5E-14 1.1E-18 102.6 15.8 133 19-172 35-190 (218)
77 PRK11088 rrmA 23S rRNA methylt 99.6 6.1E-15 1.3E-19 111.2 9.9 92 20-120 84-183 (272)
78 PRK13944 protein-L-isoaspartat 99.6 9.7E-15 2.1E-19 105.7 10.3 104 6-118 58-173 (205)
79 PF05175 MTS: Methyltransferas 99.6 3.8E-15 8.2E-20 104.8 7.8 110 8-118 19-140 (170)
80 COG2813 RsmC 16S RNA G1207 met 99.6 1.2E-13 2.6E-18 103.1 15.9 110 9-119 147-267 (300)
81 COG2242 CobL Precorrin-6B meth 99.6 7.6E-14 1.6E-18 97.3 13.2 131 6-172 20-161 (187)
82 PRK11188 rrmJ 23S rRNA methylt 99.6 6.8E-14 1.5E-18 101.5 13.6 106 10-119 40-166 (209)
83 PRK09328 N5-glutamine S-adenos 99.6 1.5E-13 3.3E-18 103.7 15.5 136 6-172 94-262 (275)
84 PRK00377 cbiT cobalt-precorrin 99.6 2.2E-13 4.7E-18 98.2 15.5 105 6-116 26-143 (198)
85 PRK14968 putative methyltransf 99.6 2.1E-13 4.5E-18 97.3 15.2 132 10-173 13-174 (188)
86 PRK00517 prmA ribosomal protei 99.6 1.3E-13 2.8E-18 102.8 14.3 122 20-181 118-247 (250)
87 PRK13942 protein-L-isoaspartat 99.6 2.9E-14 6.4E-19 103.7 10.4 105 5-118 61-176 (212)
88 COG4123 Predicted O-methyltran 99.6 8.9E-14 1.9E-18 101.7 12.6 142 13-184 36-212 (248)
89 TIGR03533 L3_gln_methyl protei 99.6 2.1E-13 4.5E-18 103.3 15.1 127 20-177 120-279 (284)
90 PLN02232 ubiquinone biosynthes 99.6 1.1E-14 2.3E-19 101.5 7.2 125 49-175 1-150 (160)
91 PRK07402 precorrin-6B methylas 99.6 1.6E-13 3.5E-18 98.7 13.0 107 6-119 26-143 (196)
92 PF07021 MetW: Methionine bios 99.5 1.7E-13 3.6E-18 96.1 12.3 144 19-174 11-169 (193)
93 TIGR00080 pimt protein-L-isoas 99.5 6.2E-14 1.3E-18 102.3 10.3 102 7-117 64-176 (215)
94 TIGR00091 tRNA (guanine-N(7)-) 99.5 2.6E-14 5.5E-19 102.7 8.0 99 21-119 16-133 (194)
95 PHA03411 putative methyltransf 99.5 2.1E-13 4.5E-18 101.2 12.0 124 21-167 64-209 (279)
96 TIGR00536 hemK_fam HemK family 99.5 4.2E-13 9E-18 101.8 13.4 138 6-173 99-270 (284)
97 PRK11805 N5-glutamine S-adenos 99.5 7.7E-13 1.7E-17 101.1 14.8 95 22-116 134-261 (307)
98 PRK14967 putative methyltransf 99.5 8E-13 1.7E-17 97.0 14.3 112 8-121 24-162 (223)
99 PRK14121 tRNA (guanine-N(7)-)- 99.5 1.5E-13 3.2E-18 106.9 10.3 108 11-119 113-236 (390)
100 TIGR00406 prmA ribosomal prote 99.5 7.6E-13 1.6E-17 100.5 13.2 118 20-173 158-284 (288)
101 PRK14966 unknown domain/N5-glu 99.5 1.1E-12 2.3E-17 102.8 13.5 136 6-174 239-407 (423)
102 COG4976 Predicted methyltransf 99.5 2.1E-13 4.5E-18 97.4 8.1 147 8-174 113-267 (287)
103 TIGR01177 conserved hypothetic 99.5 1.1E-12 2.5E-17 101.4 12.6 110 6-118 168-294 (329)
104 TIGR00438 rrmJ cell division p 99.5 3.3E-12 7.3E-17 91.3 14.0 104 11-118 22-146 (188)
105 COG2264 PrmA Ribosomal protein 99.5 3.8E-12 8.2E-17 95.6 14.2 125 20-179 161-295 (300)
106 PRK00312 pcm protein-L-isoaspa 99.5 1.1E-12 2.3E-17 95.5 10.8 104 5-119 63-176 (212)
107 PRK01544 bifunctional N5-gluta 99.4 2.8E-12 6E-17 104.2 14.0 122 22-173 139-294 (506)
108 TIGR03704 PrmC_rel_meth putati 99.4 5.2E-12 1.1E-16 94.1 13.9 136 6-171 71-239 (251)
109 PF05148 Methyltransf_8: Hypot 99.4 3.7E-12 8.1E-17 90.3 12.3 136 7-184 58-197 (219)
110 PRK04457 spermidine synthase; 99.4 8.5E-13 1.8E-17 98.8 9.6 108 9-117 54-176 (262)
111 PF12147 Methyltransf_20: Puta 99.4 1.9E-11 4.1E-16 90.6 16.0 156 19-183 133-310 (311)
112 PF05219 DREV: DREV methyltran 99.4 1.1E-11 2.5E-16 90.6 14.6 160 1-174 70-242 (265)
113 COG2518 Pcm Protein-L-isoaspar 99.4 1.9E-12 4.2E-17 92.1 10.0 103 6-119 58-170 (209)
114 KOG3010 Methyltransferase [Gen 99.4 3.3E-12 7.1E-17 92.0 9.2 108 7-122 22-140 (261)
115 COG2519 GCD14 tRNA(1-methylade 99.4 9.6E-12 2.1E-16 90.6 11.7 105 9-121 83-198 (256)
116 KOG1271 Methyltransferases [Ge 99.4 3.3E-12 7.1E-17 88.2 8.4 125 20-174 65-207 (227)
117 PF06325 PrmA: Ribosomal prote 99.4 1.2E-11 2.7E-16 93.5 12.3 128 20-183 160-294 (295)
118 PF01135 PCMT: Protein-L-isoas 99.4 1.1E-12 2.3E-17 94.8 5.9 105 5-118 57-172 (209)
119 KOG2899 Predicted methyltransf 99.4 1.1E-11 2.3E-16 89.3 10.8 143 19-169 56-254 (288)
120 COG2890 HemK Methylase of poly 99.4 3.5E-11 7.6E-16 90.8 13.8 121 24-174 113-265 (280)
121 PRK13943 protein-L-isoaspartat 99.4 9E-12 2E-16 95.5 10.7 104 6-118 66-180 (322)
122 PF13659 Methyltransf_26: Meth 99.4 1.7E-12 3.7E-17 85.6 5.9 96 23-119 2-116 (117)
123 PRK13256 thiopurine S-methyltr 99.4 4E-11 8.8E-16 87.3 13.4 101 19-121 41-166 (226)
124 cd02440 AdoMet_MTases S-adenos 99.3 1.1E-11 2.3E-16 79.1 9.2 92 24-117 1-103 (107)
125 PRK00811 spermidine synthase; 99.3 6.2E-12 1.4E-16 95.2 8.8 109 9-117 62-190 (283)
126 PF05724 TPMT: Thiopurine S-me 99.3 1.2E-11 2.7E-16 90.0 9.6 142 9-172 26-190 (218)
127 PLN02366 spermidine synthase 99.3 1.9E-11 4E-16 93.3 10.8 112 6-117 74-205 (308)
128 COG3963 Phospholipid N-methylt 99.3 3.8E-11 8.3E-16 81.8 10.5 116 4-120 32-158 (194)
129 KOG3045 Predicted RNA methylas 99.3 1E-10 2.2E-15 85.1 12.9 133 9-184 168-303 (325)
130 PRK03612 spermidine synthase; 99.3 6.5E-11 1.4E-15 96.7 12.7 99 20-118 296-415 (521)
131 smart00650 rADc Ribosomal RNA 99.3 2.3E-11 5E-16 85.5 8.1 102 9-118 2-113 (169)
132 TIGR00417 speE spermidine synt 99.3 3.5E-11 7.7E-16 90.7 9.5 110 8-117 57-185 (270)
133 PF04672 Methyltransf_19: S-ad 99.3 2.7E-11 6E-16 89.5 8.1 157 4-169 51-233 (267)
134 KOG1541 Predicted protein carb 99.3 6.3E-11 1.4E-15 84.3 9.3 109 5-116 33-158 (270)
135 PRK01581 speE spermidine synth 99.2 4.5E-11 9.9E-16 92.1 9.1 99 19-117 148-267 (374)
136 PRK10901 16S rRNA methyltransf 99.2 1.5E-10 3.2E-15 92.6 12.0 112 8-120 232-374 (427)
137 PF08704 GCD14: tRNA methyltra 99.2 8.1E-11 1.7E-15 86.9 9.2 129 9-174 29-173 (247)
138 PF01739 CheR: CheR methyltran 99.2 3.6E-11 7.9E-16 86.0 6.5 99 20-118 30-175 (196)
139 TIGR00563 rsmB ribosomal RNA s 99.2 1.7E-10 3.6E-15 92.3 10.9 114 7-121 225-371 (426)
140 PLN02781 Probable caffeoyl-CoA 99.2 2.4E-10 5.3E-15 84.3 10.9 99 19-122 66-182 (234)
141 TIGR03439 methyl_EasF probable 99.2 4.4E-10 9.6E-15 86.0 12.3 106 9-117 67-196 (319)
142 PRK14902 16S rRNA methyltransf 99.2 2.6E-10 5.7E-15 91.7 10.9 110 9-119 239-380 (444)
143 PHA03412 putative methyltransf 99.2 3.6E-10 7.9E-15 82.3 10.5 94 22-116 50-160 (241)
144 PLN02672 methionine S-methyltr 99.2 4E-10 8.6E-15 97.6 12.5 122 22-173 119-304 (1082)
145 PRK14901 16S rRNA methyltransf 99.2 3.1E-10 6.7E-15 91.0 11.1 111 9-120 241-386 (434)
146 PF03291 Pox_MCEL: mRNA cappin 99.2 6.2E-11 1.3E-15 91.3 6.8 98 21-120 62-188 (331)
147 PF02390 Methyltransf_4: Putat 99.2 5.2E-11 1.1E-15 85.4 5.7 96 23-118 19-133 (195)
148 PRK14904 16S rRNA methyltransf 99.2 3.3E-10 7.1E-15 91.1 10.7 109 12-121 242-380 (445)
149 PRK10611 chemotaxis methyltran 99.1 4.5E-10 9.7E-15 84.8 9.5 98 21-118 115-262 (287)
150 COG1352 CheR Methylase of chem 99.1 1.7E-09 3.6E-14 80.7 11.5 98 21-118 96-241 (268)
151 PRK14903 16S rRNA methyltransf 99.1 1.2E-09 2.5E-14 87.5 11.1 111 10-121 227-369 (431)
152 TIGR00446 nop2p NOL1/NOP2/sun 99.1 1.3E-09 2.9E-14 81.8 10.3 107 14-121 65-202 (264)
153 PRK13168 rumA 23S rRNA m(5)U19 99.0 4.5E-09 9.8E-14 84.6 11.6 103 6-117 283-399 (443)
154 TIGR00755 ksgA dimethyladenosi 99.0 3.6E-09 7.8E-14 79.1 10.2 94 5-106 14-116 (253)
155 KOG1975 mRNA cap methyltransfe 99.0 1.3E-09 2.7E-14 81.9 7.5 114 3-119 101-238 (389)
156 PRK00274 ksgA 16S ribosomal RN 99.0 1.6E-09 3.4E-14 81.8 8.2 85 5-93 27-118 (272)
157 PLN02476 O-methyltransferase 99.0 4.2E-09 9.1E-14 79.0 10.3 100 19-123 116-233 (278)
158 PRK14896 ksgA 16S ribosomal RN 99.0 1.4E-09 2.9E-14 81.6 7.8 85 5-93 14-104 (258)
159 COG4122 Predicted O-methyltran 99.0 1.9E-09 4E-14 78.0 7.9 99 19-122 57-170 (219)
160 COG0220 Predicted S-adenosylme 99.0 2.8E-09 6.1E-14 77.8 8.6 96 23-118 50-164 (227)
161 PF11968 DUF3321: Putative met 99.0 2.7E-08 6E-13 71.2 13.2 136 4-174 31-183 (219)
162 TIGR00478 tly hemolysin TlyA f 99.0 1.8E-08 3.9E-13 73.8 12.6 145 9-174 63-219 (228)
163 PF01596 Methyltransf_3: O-met 99.0 7.9E-10 1.7E-14 79.7 4.9 97 20-121 44-158 (205)
164 PRK10909 rsmD 16S rRNA m(2)G96 99.0 6.2E-09 1.4E-13 74.8 9.4 111 5-119 37-160 (199)
165 PRK11783 rlmL 23S rRNA m(2)G24 98.9 1.5E-08 3.2E-13 85.8 12.1 97 21-118 538-656 (702)
166 PRK15128 23S rRNA m(5)C1962 me 98.9 1.2E-08 2.5E-13 80.8 10.8 98 20-118 219-339 (396)
167 PF08123 DOT1: Histone methyla 98.9 4.7E-09 1E-13 75.6 7.7 115 5-123 27-163 (205)
168 PF09243 Rsm22: Mitochondrial 98.9 1.1E-08 2.4E-13 77.2 9.7 113 8-123 21-144 (274)
169 KOG2940 Predicted methyltransf 98.9 1E-09 2.2E-14 78.8 3.8 140 21-170 72-225 (325)
170 PTZ00338 dimethyladenosine tra 98.9 8.5E-09 1.8E-13 78.4 8.6 93 5-101 21-122 (294)
171 COG2521 Predicted archaeal met 98.9 2.9E-08 6.3E-13 71.5 10.7 133 19-174 132-279 (287)
172 PLN02823 spermine synthase 98.9 8.2E-09 1.8E-13 79.7 8.6 108 9-117 89-219 (336)
173 COG0421 SpeE Spermidine syntha 98.9 2.2E-08 4.8E-13 75.4 9.6 110 7-117 60-189 (282)
174 PLN02589 caffeoyl-CoA O-methyl 98.8 1.6E-08 3.6E-13 74.9 8.2 99 19-122 77-194 (247)
175 TIGR00479 rumA 23S rRNA (uraci 98.8 4.5E-08 9.8E-13 78.6 11.3 102 7-116 279-394 (431)
176 KOG1661 Protein-L-isoaspartate 98.8 1.5E-08 3.2E-13 71.9 7.3 102 8-117 68-192 (237)
177 KOG1499 Protein arginine N-met 98.8 7.9E-09 1.7E-13 78.6 6.1 95 20-115 59-164 (346)
178 PRK04148 hypothetical protein; 98.8 6.5E-08 1.4E-12 64.6 9.5 104 7-121 3-112 (134)
179 PRK00536 speE spermidine synth 98.8 5E-08 1.1E-12 72.7 9.6 102 6-117 55-170 (262)
180 COG2263 Predicted RNA methylas 98.8 1.4E-07 3E-12 66.1 10.9 116 21-171 45-167 (198)
181 KOG3191 Predicted N6-DNA-methy 98.8 3.2E-07 6.9E-12 63.8 12.5 122 22-172 44-193 (209)
182 PF05185 PRMT5: PRMT5 arginine 98.8 1.2E-08 2.7E-13 81.6 6.5 109 6-115 168-294 (448)
183 KOG1331 Predicted methyltransf 98.8 2.3E-08 5E-13 74.1 7.3 104 9-119 36-144 (293)
184 KOG1500 Protein arginine N-met 98.8 1.9E-08 4.2E-13 76.1 6.9 94 21-115 177-279 (517)
185 PRK03522 rumB 23S rRNA methylu 98.8 3.2E-08 7E-13 76.2 8.5 100 9-116 162-272 (315)
186 PRK11727 23S rRNA mA1618 methy 98.8 2.9E-08 6.3E-13 76.1 8.1 144 21-173 114-293 (321)
187 PF10294 Methyltransf_16: Puta 98.8 4.5E-08 9.7E-13 69.0 8.1 101 19-121 43-159 (173)
188 PRK01544 bifunctional N5-gluta 98.8 2.1E-08 4.5E-13 81.8 7.1 98 21-118 347-462 (506)
189 KOG2904 Predicted methyltransf 98.8 9E-08 1.9E-12 70.6 9.4 112 6-118 131-285 (328)
190 COG0030 KsgA Dimethyladenosine 98.7 1.1E-07 2.4E-12 70.4 9.0 88 5-96 15-111 (259)
191 PF03141 Methyltransf_29: Puta 98.7 7.4E-09 1.6E-13 82.2 2.9 109 9-121 102-222 (506)
192 PF01564 Spermine_synth: Sperm 98.6 3.4E-08 7.4E-13 73.4 4.5 112 7-118 60-191 (246)
193 COG4798 Predicted methyltransf 98.6 3.1E-07 6.8E-12 64.5 8.7 142 13-170 41-203 (238)
194 TIGR00095 RNA methyltransferas 98.6 4.9E-07 1.1E-11 64.6 9.0 109 6-118 34-159 (189)
195 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.6 8.4E-08 1.8E-12 71.2 4.8 92 67-172 137-239 (256)
196 TIGR02085 meth_trns_rumB 23S r 98.6 4.7E-07 1E-11 71.4 9.3 91 20-117 232-333 (374)
197 PF01269 Fibrillarin: Fibrilla 98.6 1.6E-06 3.4E-11 62.6 10.8 144 6-174 56-214 (229)
198 PF01170 UPF0020: Putative RNA 98.5 5.4E-07 1.2E-11 63.9 8.2 112 4-116 12-149 (179)
199 COG1889 NOP1 Fibrillarin-like 98.5 9.4E-06 2E-10 57.6 14.1 144 6-174 59-216 (231)
200 KOG0820 Ribosomal RNA adenine 98.5 3.8E-07 8.3E-12 67.3 6.9 80 6-88 44-132 (315)
201 PF04816 DUF633: Family of unk 98.5 2.2E-06 4.7E-11 61.9 10.0 123 25-182 1-137 (205)
202 PRK00050 16S rRNA m(4)C1402 me 98.5 4.5E-07 9.7E-12 68.9 6.7 80 7-87 6-98 (296)
203 PF01728 FtsJ: FtsJ-like methy 98.5 4.4E-07 9.6E-12 64.4 6.1 107 9-119 9-140 (181)
204 KOG1269 SAM-dependent methyltr 98.5 1.7E-07 3.7E-12 73.1 4.2 101 19-122 108-219 (364)
205 PRK04338 N(2),N(2)-dimethylgua 98.5 1.1E-06 2.3E-11 69.4 8.5 107 5-118 41-158 (382)
206 COG0293 FtsJ 23S rRNA methylas 98.5 7.2E-06 1.6E-10 58.7 11.8 109 9-121 33-162 (205)
207 PF02527 GidB: rRNA small subu 98.4 8.9E-07 1.9E-11 62.9 6.5 93 19-117 45-147 (184)
208 TIGR02143 trmA_only tRNA (urac 98.4 4.8E-07 1E-11 70.8 5.5 65 7-75 185-256 (353)
209 COG1041 Predicted DNA modifica 98.4 1.5E-05 3.3E-10 61.2 13.3 110 7-119 184-311 (347)
210 COG0357 GidB Predicted S-adeno 98.4 1.5E-06 3.3E-11 62.8 7.3 89 22-116 68-166 (215)
211 KOG3987 Uncharacterized conser 98.4 7.2E-07 1.6E-11 63.4 4.9 159 3-173 92-261 (288)
212 PF00398 RrnaAD: Ribosomal RNA 98.4 2E-06 4.3E-11 64.7 7.6 98 5-110 15-123 (262)
213 PRK11933 yebU rRNA (cytosine-C 98.4 5.9E-06 1.3E-10 66.8 10.6 100 19-118 111-242 (470)
214 PF07942 N2227: N2227-like pro 98.3 3.9E-05 8.5E-10 57.5 13.3 147 8-172 40-242 (270)
215 PRK05031 tRNA (uracil-5-)-meth 98.3 1.2E-06 2.7E-11 68.8 5.6 64 8-75 195-265 (362)
216 COG4076 Predicted RNA methylas 98.3 3.5E-06 7.7E-11 59.0 6.7 94 22-117 33-134 (252)
217 PF13679 Methyltransf_32: Meth 98.3 7E-06 1.5E-10 55.9 7.8 91 19-116 23-129 (141)
218 PRK11760 putative 23S rRNA C24 98.2 1.2E-05 2.6E-10 61.8 9.1 85 19-111 209-296 (357)
219 PF02475 Met_10: Met-10+ like- 98.2 3E-06 6.4E-11 60.9 5.4 90 19-114 99-198 (200)
220 COG1189 Predicted rRNA methyla 98.2 6.3E-05 1.4E-09 54.8 11.7 151 9-174 67-226 (245)
221 KOG2915 tRNA(1-methyladenosine 98.2 4.5E-05 9.7E-10 56.6 10.9 128 9-173 94-236 (314)
222 TIGR00027 mthyl_TIGR00027 meth 98.1 4.6E-05 1E-09 57.2 10.7 148 20-170 80-248 (260)
223 COG0500 SmtA SAM-dependent met 98.1 3.9E-05 8.4E-10 52.3 9.7 95 25-123 52-160 (257)
224 KOG3420 Predicted RNA methylas 98.1 3.4E-06 7.3E-11 56.7 3.7 70 21-91 48-126 (185)
225 PF02384 N6_Mtase: N-6 DNA Met 98.1 1.1E-05 2.4E-10 62.1 6.3 113 5-119 31-184 (311)
226 COG1092 Predicted SAM-dependen 98.0 8E-05 1.7E-09 58.8 10.0 97 22-119 218-337 (393)
227 PLN02668 indole-3-acetate carb 98.0 0.00026 5.6E-09 55.8 12.7 103 21-123 63-242 (386)
228 COG4262 Predicted spermidine s 98.0 6.3E-05 1.4E-09 58.1 8.3 96 19-118 287-407 (508)
229 COG4627 Uncharacterized protei 97.9 8.6E-06 1.9E-10 55.3 3.1 80 25-120 6-88 (185)
230 PRK11783 rlmL 23S rRNA m(2)G24 97.9 0.00013 2.9E-09 62.2 10.3 115 4-119 173-348 (702)
231 KOG3201 Uncharacterized conser 97.9 8.7E-06 1.9E-10 55.7 2.5 97 21-119 29-141 (201)
232 KOG3115 Methyltransferase-like 97.9 2.3E-05 5E-10 55.7 4.5 96 22-118 61-183 (249)
233 PF13578 Methyltransf_24: Meth 97.8 1.1E-05 2.4E-10 52.0 2.3 90 26-118 1-105 (106)
234 KOG1663 O-methyltransferase [S 97.8 0.00017 3.6E-09 52.3 8.2 107 8-123 64-188 (237)
235 COG2384 Predicted SAM-dependen 97.8 0.002 4.3E-08 46.6 13.5 119 21-174 16-145 (226)
236 PF03492 Methyltransf_7: SAM d 97.8 0.00058 1.3E-08 53.2 11.7 150 19-168 14-249 (334)
237 TIGR01444 fkbM_fam methyltrans 97.8 3.2E-05 6.9E-10 52.5 4.0 52 24-75 1-59 (143)
238 PF03602 Cons_hypoth95: Conser 97.8 3.4E-05 7.4E-10 54.8 4.1 112 4-118 24-153 (183)
239 PF04989 CmcI: Cephalosporin h 97.8 0.00036 7.8E-09 50.2 9.2 108 8-121 23-150 (206)
240 PF10672 Methyltrans_SAM: S-ad 97.8 9.8E-05 2.1E-09 56.0 6.6 97 21-118 123-238 (286)
241 KOG4589 Cell division protein 97.8 0.00032 6.9E-09 49.4 8.5 103 14-120 62-186 (232)
242 KOG1709 Guanidinoacetate methy 97.7 0.00034 7.5E-09 50.3 8.6 110 5-118 87-206 (271)
243 COG4301 Uncharacterized conser 97.7 0.00022 4.8E-09 52.3 7.7 99 19-117 76-192 (321)
244 TIGR02987 met_A_Alw26 type II 97.7 0.00023 4.9E-09 58.9 8.7 84 5-88 9-121 (524)
245 KOG2798 Putative trehalase [Ca 97.7 0.0013 2.9E-08 49.9 11.9 151 7-172 133-337 (369)
246 COG3897 Predicted methyltransf 97.7 0.00028 6.1E-09 50.0 7.5 102 19-123 77-184 (218)
247 COG3315 O-Methyltransferase in 97.7 0.00022 4.8E-09 54.5 7.4 151 20-171 91-263 (297)
248 PF03059 NAS: Nicotianamine sy 97.7 0.00022 4.8E-09 53.7 7.1 95 21-116 120-228 (276)
249 PF09445 Methyltransf_15: RNA 97.7 3.7E-05 8.1E-10 53.3 2.8 61 23-85 1-75 (163)
250 COG0116 Predicted N6-adenine-s 97.6 0.0006 1.3E-08 53.4 9.5 114 4-118 175-344 (381)
251 TIGR00308 TRM1 tRNA(guanine-26 97.6 0.00027 5.9E-09 55.7 7.7 91 23-119 46-148 (374)
252 COG5459 Predicted rRNA methyla 97.6 7.6E-05 1.6E-09 57.4 3.8 114 9-123 102-230 (484)
253 PF07091 FmrO: Ribosomal RNA m 97.6 0.00011 2.3E-09 54.2 4.1 100 19-120 103-210 (251)
254 COG2265 TrmA SAM-dependent met 97.5 0.00079 1.7E-08 54.1 8.6 103 6-116 279-394 (432)
255 KOG2187 tRNA uracil-5-methyltr 97.5 0.00018 4E-09 57.8 4.8 66 7-75 370-442 (534)
256 PF05958 tRNA_U5-meth_tr: tRNA 97.4 0.00013 2.7E-09 57.3 3.5 65 6-74 183-254 (352)
257 COG0742 N6-adenine-specific me 97.4 0.0022 4.7E-08 45.5 9.3 114 4-118 25-154 (187)
258 KOG1596 Fibrillarin and relate 97.2 0.003 6.5E-08 46.4 8.1 97 19-119 154-262 (317)
259 COG0144 Sun tRNA and rRNA cyto 97.2 0.0072 1.6E-07 47.5 10.9 105 14-119 150-289 (355)
260 TIGR00006 S-adenosyl-methyltra 97.2 0.0011 2.4E-08 50.7 5.9 68 7-75 7-80 (305)
261 COG2520 Predicted methyltransf 97.2 0.0012 2.7E-08 51.2 6.2 97 20-123 187-294 (341)
262 KOG1099 SAM-dependent methyltr 97.2 0.0013 2.8E-08 47.9 5.7 98 15-116 35-161 (294)
263 PF01795 Methyltransf_5: MraW 97.1 0.0014 3.1E-08 50.2 6.2 68 7-75 7-80 (310)
264 PF11599 AviRa: RRNA methyltra 97.0 0.0039 8.5E-08 45.0 7.1 113 5-118 36-214 (246)
265 PF04072 LCM: Leucine carboxyl 97.0 0.0017 3.7E-08 46.1 5.4 84 21-104 78-182 (183)
266 KOG2352 Predicted spermine/spe 97.0 0.0059 1.3E-07 49.1 8.5 97 23-120 50-163 (482)
267 KOG2918 Carboxymethyl transfer 97.0 0.033 7.3E-07 42.5 11.8 146 19-172 85-277 (335)
268 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.9 0.0061 1.3E-07 46.4 7.9 105 13-118 78-219 (283)
269 KOG4058 Uncharacterized conser 96.9 0.005 1.1E-07 41.8 6.2 111 6-123 58-177 (199)
270 PF03269 DUF268: Caenorhabditi 96.9 0.0035 7.7E-08 43.1 5.5 100 22-123 2-116 (177)
271 PF11312 DUF3115: Protein of u 96.9 0.0027 5.8E-08 48.4 5.4 100 23-122 88-246 (315)
272 COG1064 AdhP Zn-dependent alco 96.7 0.014 2.9E-07 45.4 8.5 92 19-120 164-261 (339)
273 PF03141 Methyltransf_29: Puta 96.7 0.0031 6.8E-08 50.9 5.0 97 19-118 363-467 (506)
274 KOG2730 Methylase [General fun 96.6 0.0035 7.6E-08 45.4 4.4 53 21-75 94-154 (263)
275 KOG0822 Protein kinase inhibit 96.5 0.0071 1.5E-07 49.2 5.9 111 4-115 348-475 (649)
276 KOG2793 Putative N2,N2-dimethy 96.5 0.02 4.3E-07 42.6 7.7 97 22-121 87-202 (248)
277 KOG1562 Spermidine synthase [A 96.5 0.0041 8.9E-08 47.0 4.0 110 9-118 107-236 (337)
278 PF06859 Bin3: Bicoid-interact 96.4 0.0015 3.2E-08 42.0 1.0 84 81-173 3-93 (110)
279 KOG3924 Putative protein methy 96.3 0.012 2.6E-07 46.2 5.8 114 6-123 178-313 (419)
280 PRK01747 mnmC bifunctional tRN 96.3 0.023 5.1E-07 48.4 8.0 96 21-116 57-204 (662)
281 PF07757 AdoMet_MTase: Predict 96.0 0.011 2.4E-07 37.9 3.6 31 21-53 58-88 (112)
282 PF03514 GRAS: GRAS domain fam 96.0 0.066 1.4E-06 42.5 8.7 45 8-53 98-149 (374)
283 cd08283 FDH_like_1 Glutathione 95.8 0.13 2.9E-06 40.8 9.9 99 19-119 182-307 (386)
284 COG0275 Predicted S-adenosylme 95.8 0.03 6.6E-07 42.6 5.7 71 4-75 7-84 (314)
285 PF05971 Methyltransf_10: Prot 95.5 0.035 7.6E-07 42.5 5.2 84 9-92 89-190 (299)
286 COG3510 CmcI Cephalosporin hyd 95.2 0.49 1.1E-05 33.9 9.6 111 8-124 60-186 (237)
287 PF05711 TylF: Macrocin-O-meth 95.1 0.1 2.3E-06 38.9 6.5 96 20-119 73-213 (248)
288 PF06962 rRNA_methylase: Putat 95.0 0.029 6.3E-07 38.0 3.2 71 47-119 1-93 (140)
289 COG1063 Tdh Threonine dehydrog 95.0 0.27 5.8E-06 38.7 9.0 96 20-123 167-274 (350)
290 KOG0024 Sorbitol dehydrogenase 94.6 0.46 1E-05 36.8 9.0 95 19-122 167-277 (354)
291 PF05206 TRM13: Methyltransfer 94.5 0.13 2.7E-06 38.7 5.8 35 19-53 16-55 (259)
292 PRK10742 putative methyltransf 94.4 0.13 2.9E-06 38.2 5.6 41 10-53 76-118 (250)
293 PF11899 DUF3419: Protein of u 94.3 0.1 2.2E-06 41.5 5.0 60 64-123 275-339 (380)
294 KOG2651 rRNA adenine N-6-methy 94.0 0.1 2.2E-06 41.1 4.5 50 10-60 142-192 (476)
295 PF02153 PDH: Prephenate dehyd 93.9 0.19 4.1E-06 37.8 5.7 75 35-115 1-76 (258)
296 PF01861 DUF43: Protein of unk 93.9 2 4.3E-05 31.9 11.4 125 21-173 44-179 (243)
297 PF12692 Methyltransf_17: S-ad 93.6 0.31 6.7E-06 33.3 5.6 114 5-121 14-137 (160)
298 PF05430 Methyltransf_30: S-ad 93.5 0.13 2.9E-06 34.1 3.8 87 65-184 32-123 (124)
299 COG1255 Uncharacterized protei 93.3 1.5 3.2E-05 28.7 8.8 85 21-118 13-102 (129)
300 COG0287 TyrA Prephenate dehydr 93.0 0.69 1.5E-05 35.3 7.5 88 22-115 3-95 (279)
301 COG1565 Uncharacterized conser 93.0 0.25 5.5E-06 38.7 5.2 41 19-59 75-124 (370)
302 cd08254 hydroxyacyl_CoA_DH 6-h 92.9 1.4 3E-05 33.9 9.4 91 19-119 163-264 (338)
303 PRK07502 cyclohexadienyl dehyd 92.9 1 2.2E-05 34.7 8.5 91 21-116 5-98 (307)
304 cd00315 Cyt_C5_DNA_methylase C 92.9 1.6 3.5E-05 33.1 9.4 121 24-169 2-140 (275)
305 PF07279 DUF1442: Protein of u 92.6 1.7 3.7E-05 31.7 8.6 107 9-122 29-152 (218)
306 KOG1501 Arginine N-methyltrans 92.5 0.16 3.5E-06 40.8 3.5 40 23-63 68-108 (636)
307 COG0286 HsdM Type I restrictio 92.3 0.93 2E-05 37.4 7.9 111 6-117 172-325 (489)
308 PRK09424 pntA NAD(P) transhydr 92.3 1.5 3.2E-05 36.5 9.0 96 20-119 163-286 (509)
309 KOG2539 Mitochondrial/chloropl 92.3 0.51 1.1E-05 38.2 6.1 101 21-121 200-318 (491)
310 PF02636 Methyltransf_28: Puta 92.3 0.29 6.3E-06 36.6 4.6 36 22-57 19-63 (252)
311 TIGR01202 bchC 2-desacetyl-2-h 91.8 1.6 3.4E-05 33.6 8.3 86 21-119 144-232 (308)
312 cd08237 ribitol-5-phosphate_DH 91.7 1.9 4.1E-05 33.6 8.8 94 19-119 161-257 (341)
313 PRK05225 ketol-acid reductoiso 91.3 0.35 7.6E-06 39.3 4.3 90 21-118 35-131 (487)
314 PF10354 DUF2431: Domain of un 91.3 3.7 8.1E-05 28.7 9.7 119 28-173 3-153 (166)
315 PRK09880 L-idonate 5-dehydroge 90.9 3 6.5E-05 32.5 9.2 93 19-119 167-267 (343)
316 PF03686 UPF0146: Uncharacteri 90.8 1.1 2.3E-05 29.8 5.5 87 21-121 13-105 (127)
317 COG0373 HemA Glutamyl-tRNA red 90.2 4.2 9.2E-05 32.8 9.4 98 21-125 177-279 (414)
318 PRK11524 putative methyltransf 90.0 0.71 1.5E-05 35.2 4.9 54 6-63 195-249 (284)
319 COG2933 Predicted SAM-dependen 89.7 2.8 6E-05 31.8 7.4 99 5-111 189-296 (358)
320 PF02254 TrkA_N: TrkA-N domain 89.6 0.42 9.1E-06 30.8 3.0 81 30-116 4-94 (116)
321 PHA01634 hypothetical protein 89.2 0.59 1.3E-05 31.2 3.3 41 21-62 28-69 (156)
322 COG0541 Ffh Signal recognition 89.0 1.5 3.3E-05 35.4 6.1 103 21-123 99-226 (451)
323 PRK07417 arogenate dehydrogena 89.0 3.1 6.6E-05 31.6 7.6 83 24-114 2-87 (279)
324 cd05188 MDR Medium chain reduc 88.8 7.6 0.00016 28.5 10.4 97 15-120 128-234 (271)
325 cd05213 NAD_bind_Glutamyl_tRNA 88.8 9.4 0.0002 29.6 10.5 123 20-162 176-302 (311)
326 KOG2198 tRNA cytosine-5-methyl 88.6 1.6 3.5E-05 34.4 5.8 35 19-53 153-191 (375)
327 cd00401 AdoHcyase S-adenosyl-L 88.6 4.1 8.9E-05 33.0 8.3 99 8-118 188-289 (413)
328 PF06557 DUF1122: Protein of u 88.4 2.8 6.2E-05 29.0 6.3 60 98-174 66-125 (170)
329 PRK13699 putative methylase; P 88.3 1.2 2.6E-05 32.8 4.9 54 6-63 150-204 (227)
330 TIGR00675 dcm DNA-methyltransf 87.9 3.6 7.8E-05 31.9 7.5 118 25-168 1-136 (315)
331 PRK13699 putative methylase; P 87.9 1.8 3.9E-05 31.9 5.6 19 98-116 52-70 (227)
332 PF14740 DUF4471: Domain of un 87.5 1.1 2.5E-05 34.2 4.4 78 65-169 201-286 (289)
333 COG1867 TRM1 N2,N2-dimethylgua 87.3 3.5 7.7E-05 32.6 7.0 111 4-121 36-157 (380)
334 TIGR02822 adh_fam_2 zinc-bindi 86.7 12 0.00026 29.0 9.9 90 19-119 163-255 (329)
335 KOG0821 Predicted ribosomal RN 86.6 3 6.5E-05 30.7 5.9 45 7-52 37-82 (326)
336 KOG2920 Predicted methyltransf 86.5 1.4 2.9E-05 33.5 4.2 108 5-116 98-232 (282)
337 PRK03659 glutathione-regulated 86.1 6.2 0.00013 33.6 8.5 86 23-116 401-496 (601)
338 PF03446 NAD_binding_2: NAD bi 86.0 1.2 2.6E-05 30.8 3.7 83 25-116 4-92 (163)
339 PF00107 ADH_zinc_N: Zinc-bind 86.0 1.2 2.6E-05 29.2 3.5 82 31-121 1-92 (130)
340 KOG1209 1-Acyl dihydroxyaceton 86.0 12 0.00026 27.7 10.8 78 20-118 5-86 (289)
341 PF01555 N6_N4_Mtase: DNA meth 85.7 0.82 1.8E-05 33.0 2.8 41 19-61 189-230 (231)
342 PRK15001 SAM-dependent 23S rib 85.0 7.5 0.00016 31.1 8.0 91 23-120 46-144 (378)
343 KOG2352 Predicted spermine/spe 84.9 2.2 4.7E-05 34.9 4.9 102 20-121 294-419 (482)
344 TIGR00561 pntA NAD(P) transhyd 84.6 4.3 9.4E-05 33.8 6.7 92 21-116 163-282 (511)
345 cd08281 liver_ADH_like1 Zinc-d 84.2 15 0.00032 29.0 9.5 92 19-119 189-291 (371)
346 PRK08507 prephenate dehydrogen 84.1 6.8 0.00015 29.6 7.2 84 24-115 2-88 (275)
347 PRK03562 glutathione-regulated 83.5 14 0.0003 31.7 9.4 88 22-116 400-496 (621)
348 KOG1122 tRNA and rRNA cytosine 83.3 7 0.00015 31.6 7.0 100 19-119 239-372 (460)
349 cd08230 glucose_DH Glucose deh 83.2 9.2 0.0002 29.9 7.9 90 19-120 170-271 (355)
350 PRK11524 putative methyltransf 83.2 3.1 6.6E-05 31.8 5.0 20 98-117 60-79 (284)
351 PLN03139 formate dehydrogenase 83.2 4.8 0.0001 32.3 6.2 88 21-116 198-289 (386)
352 PRK06545 prephenate dehydrogen 83.0 9.8 0.00021 30.1 8.0 84 24-112 2-89 (359)
353 TIGR03451 mycoS_dep_FDH mycoth 82.9 19 0.0004 28.2 9.5 93 19-119 174-277 (358)
354 cd08232 idonate-5-DH L-idonate 82.9 20 0.00042 27.7 10.1 89 21-118 165-262 (339)
355 cd01842 SGNH_hydrolase_like_5 82.5 4.2 9.1E-05 28.8 5.0 41 81-121 52-102 (183)
356 PRK09489 rsmC 16S ribosomal RN 82.5 22 0.00048 28.0 10.1 104 11-121 10-115 (342)
357 KOG0023 Alcohol dehydrogenase, 81.9 2.3 5.1E-05 33.0 3.9 97 13-121 174-282 (360)
358 TIGR03366 HpnZ_proposed putati 81.8 20 0.00043 27.0 9.8 94 19-120 118-220 (280)
359 PF07991 IlvN: Acetohydroxy ac 81.8 3.7 7.9E-05 28.7 4.4 90 22-119 4-96 (165)
360 COG0686 Ald Alanine dehydrogen 80.6 8.2 0.00018 30.1 6.3 92 21-115 167-265 (371)
361 TIGR00936 ahcY adenosylhomocys 80.6 21 0.00045 29.0 8.9 99 9-119 182-283 (406)
362 cd08234 threonine_DH_like L-th 80.6 24 0.00051 27.1 9.7 91 19-119 157-258 (334)
363 cd08255 2-desacetyl-2-hydroxye 80.3 22 0.00047 26.5 9.5 90 19-118 95-190 (277)
364 PRK07574 formate dehydrogenase 80.2 7.3 0.00016 31.2 6.3 87 22-115 192-281 (385)
365 PRK09273 hypothetical protein; 79.8 2.1 4.6E-05 31.0 2.9 42 28-69 69-110 (211)
366 PF02826 2-Hacid_dh_C: D-isome 79.8 2.5 5.4E-05 29.8 3.3 87 21-115 35-124 (178)
367 COG5379 BtaA S-adenosylmethion 79.6 5.1 0.00011 30.9 4.9 60 64-123 307-371 (414)
368 PRK08655 prephenate dehydrogen 79.4 14 0.00029 30.3 7.7 85 24-116 2-90 (437)
369 KOG1269 SAM-dependent methyltr 79.3 5.5 0.00012 31.7 5.3 100 23-124 182-319 (364)
370 COG4121 Uncharacterized conser 79.1 8.6 0.00019 28.9 5.9 26 21-46 58-83 (252)
371 cd05278 FDH_like Formaldehyde 79.0 17 0.00036 28.1 8.0 92 19-118 165-267 (347)
372 TIGR01120 rpiB ribose 5-phosph 78.2 3.1 6.8E-05 28.3 3.2 37 30-66 64-100 (143)
373 PF07109 Mg-por_mtran_C: Magne 78.1 15 0.00032 23.3 6.1 80 87-178 3-88 (97)
374 PRK05479 ketol-acid reductoiso 78.1 9.5 0.00021 29.9 6.2 86 21-116 16-106 (330)
375 PTZ00117 malate dehydrogenase; 78.0 25 0.00055 27.3 8.6 96 21-118 4-122 (319)
376 KOG1098 Putative SAM-dependent 77.9 4.8 0.0001 34.2 4.7 100 11-114 34-154 (780)
377 KOG1252 Cystathionine beta-syn 77.9 13 0.00028 29.2 6.7 43 8-53 201-247 (362)
378 COG0604 Qor NADPH:quinone redu 77.6 15 0.00033 28.7 7.3 97 15-121 137-244 (326)
379 TIGR00689 rpiB_lacA_lacB sugar 77.0 3.5 7.5E-05 28.2 3.2 35 30-64 63-97 (144)
380 PRK11730 fadB multifunctional 77.0 10 0.00022 33.0 6.7 149 22-175 313-496 (715)
381 COG2085 Predicted dinucleotide 76.9 4.4 9.5E-05 29.5 3.8 81 31-118 8-92 (211)
382 PRK08818 prephenate dehydrogen 76.8 14 0.0003 29.5 6.9 75 22-114 4-84 (370)
383 PF04445 SAM_MT: Putative SAM- 76.8 4.1 8.9E-05 30.2 3.7 79 10-91 63-163 (234)
384 cd08245 CAD Cinnamyl alcohol d 76.4 32 0.00069 26.3 10.5 91 19-119 160-257 (330)
385 PLN02740 Alcohol dehydrogenase 76.3 29 0.00064 27.5 8.8 93 19-119 196-301 (381)
386 PRK12491 pyrroline-5-carboxyla 76.2 17 0.00036 27.6 7.0 87 23-116 3-94 (272)
387 PTZ00357 methyltransferase; Pr 76.1 4.9 0.00011 34.8 4.3 90 23-113 702-830 (1072)
388 PRK13403 ketol-acid reductoiso 76.1 13 0.00028 29.2 6.4 88 21-118 15-106 (335)
389 PRK15469 ghrA bifunctional gly 76.0 12 0.00027 29.0 6.3 84 21-115 135-223 (312)
390 COG0698 RpiB Ribose 5-phosphat 76.0 4.1 9E-05 28.0 3.3 42 28-69 64-105 (151)
391 COG1062 AdhC Zn-dependent alco 75.9 28 0.00061 27.5 8.1 100 12-120 177-287 (366)
392 PF02005 TRM: N2,N2-dimethylgu 75.9 4.8 0.0001 32.2 4.1 95 21-121 49-157 (377)
393 PRK05571 ribose-5-phosphate is 75.8 4 8.8E-05 28.0 3.2 35 30-64 66-100 (148)
394 PRK08306 dipicolinate synthase 75.5 22 0.00049 27.3 7.6 85 21-115 151-238 (296)
395 PRK10669 putative cation:proto 75.3 8.3 0.00018 32.4 5.6 86 23-116 418-513 (558)
396 PRK10309 galactitol-1-phosphat 75.1 27 0.00057 27.2 8.1 95 19-120 158-262 (347)
397 PF07101 DUF1363: Protein of u 75.0 3.2 6.9E-05 26.0 2.3 28 26-53 7-35 (124)
398 PF03807 F420_oxidored: NADP o 74.8 2.3 4.9E-05 26.3 1.7 79 31-115 6-91 (96)
399 PRK13243 glyoxylate reductase; 74.7 11 0.00024 29.6 5.8 87 21-116 149-238 (333)
400 PF10017 Methyltransf_33: Hist 74.5 6.8 0.00015 26.0 4.0 28 148-175 93-120 (127)
401 PF11899 DUF3419: Protein of u 74.4 6.4 0.00014 31.5 4.5 45 12-59 27-72 (380)
402 PRK05476 S-adenosyl-L-homocyst 74.3 29 0.00062 28.3 8.2 87 21-119 211-300 (425)
403 cd08285 NADP_ADH NADP(H)-depen 74.2 32 0.0007 26.7 8.4 93 19-119 164-267 (351)
404 PF02502 LacAB_rpiB: Ribose/Ga 74.0 3 6.4E-05 28.4 2.2 42 28-69 62-103 (140)
405 PRK15438 erythronate-4-phospha 73.9 8.6 0.00019 30.8 5.1 88 21-115 115-204 (378)
406 PRK15409 bifunctional glyoxyla 73.8 4.8 0.00011 31.4 3.6 86 22-115 145-233 (323)
407 PRK12615 galactose-6-phosphate 73.4 5.1 0.00011 28.2 3.3 40 30-69 65-104 (171)
408 PF01210 NAD_Gly3P_dh_N: NAD-d 73.3 5.1 0.00011 27.5 3.3 88 25-117 2-102 (157)
409 PRK11154 fadJ multifunctional 73.2 14 0.0003 32.2 6.6 147 22-174 309-492 (708)
410 PF05050 Methyltransf_21: Meth 73.0 6.7 0.00014 26.6 3.9 31 27-57 1-36 (167)
411 TIGR00006 S-adenosyl-methyltra 72.9 5.5 0.00012 30.9 3.7 25 96-120 218-242 (305)
412 TIGR03201 dearomat_had 6-hydro 72.9 41 0.0009 26.2 8.7 92 19-120 164-274 (349)
413 COG0275 Predicted S-adenosylme 72.6 6.4 0.00014 30.4 3.9 25 96-120 222-246 (314)
414 COG4353 Uncharacterized conser 72.5 16 0.00034 25.4 5.3 60 98-174 73-132 (192)
415 PLN00203 glutamyl-tRNA reducta 72.1 59 0.0013 27.4 10.1 98 22-124 266-373 (519)
416 COG1748 LYS9 Saccharopine dehy 71.8 15 0.00033 29.5 6.0 68 23-90 2-79 (389)
417 COG0270 Dcm Site-specific DNA 71.6 42 0.00091 26.2 8.4 120 22-166 3-141 (328)
418 PF12242 Eno-Rase_NADH_b: NAD( 71.6 16 0.00034 22.1 4.6 35 19-53 36-72 (78)
419 KOG1197 Predicted quinone oxid 71.3 21 0.00045 27.2 6.2 97 12-119 138-246 (336)
420 PRK08622 galactose-6-phosphate 71.2 5.7 0.00012 27.9 3.1 40 30-69 65-104 (171)
421 PF06016 Reovirus_L2: Reovirus 71.2 11 0.00023 34.8 5.4 93 19-113 820-920 (1289)
422 cd08239 THR_DH_like L-threonin 71.2 45 0.00098 25.7 9.2 95 14-119 157-263 (339)
423 TIGR02825 B4_12hDH leukotriene 71.1 27 0.00059 26.8 7.3 90 19-119 136-238 (325)
424 PF01358 PARP_regulatory: Poly 71.0 17 0.00038 27.8 5.8 80 20-123 57-140 (294)
425 PRK12490 6-phosphogluconate de 70.9 25 0.00055 26.9 7.0 84 25-116 3-92 (299)
426 TIGR02437 FadB fatty oxidation 70.8 15 0.00033 32.0 6.3 149 21-174 312-495 (714)
427 TIGR01119 lacB galactose-6-pho 70.4 6.2 0.00013 27.8 3.2 39 30-68 65-103 (171)
428 PRK00050 16S rRNA m(4)C1402 me 70.4 6.8 0.00015 30.2 3.7 25 96-120 214-238 (296)
429 TIGR00518 alaDH alanine dehydr 70.4 11 0.00023 30.1 4.9 93 21-116 166-265 (370)
430 PF01488 Shikimate_DH: Shikima 69.8 13 0.00028 24.9 4.6 70 21-91 11-87 (135)
431 PRK10867 signal recognition pa 69.4 61 0.0013 26.6 9.0 99 22-120 100-224 (433)
432 PTZ00215 ribose 5-phosphate is 69.1 7 0.00015 26.9 3.2 8 23-30 31-38 (151)
433 KOG2782 Putative SAM dependent 68.9 4.8 0.0001 29.6 2.4 52 9-61 32-84 (303)
434 PLN02494 adenosylhomocysteinas 68.8 21 0.00046 29.5 6.3 101 8-119 240-342 (477)
435 PLN02827 Alcohol dehydrogenase 68.3 58 0.0013 25.8 9.1 92 19-119 191-296 (378)
436 TIGR01470 cysG_Nterm siroheme 68.1 19 0.00041 26.1 5.5 62 22-86 9-76 (205)
437 KOG2666 UDP-glucose/GDP-mannos 68.0 10 0.00023 29.6 4.2 31 23-53 2-34 (481)
438 PRK09496 trkA potassium transp 68.0 64 0.0014 26.2 10.1 86 24-116 2-97 (453)
439 PRK13581 D-3-phosphoglycerate 67.8 14 0.0003 31.0 5.3 87 22-116 140-228 (526)
440 KOG2811 Uncharacterized conser 67.8 12 0.00026 29.7 4.5 32 19-50 179-211 (420)
441 PRK08293 3-hydroxybutyryl-CoA 67.6 48 0.001 25.2 7.9 90 23-116 4-118 (287)
442 PRK14806 bifunctional cyclohex 67.5 37 0.00081 29.7 8.0 87 22-113 3-92 (735)
443 PRK06436 glycerate dehydrogena 67.4 18 0.00038 28.0 5.4 84 21-115 121-206 (303)
444 TIGR02818 adh_III_F_hyde S-(hy 67.1 60 0.0013 25.5 8.8 92 19-119 183-288 (368)
445 PRK11790 D-3-phosphoglycerate 67.0 29 0.00062 28.1 6.8 85 21-115 150-236 (409)
446 COG3129 Predicted SAM-dependen 66.6 4.7 0.0001 30.0 2.0 85 7-91 63-165 (292)
447 TIGR01118 lacA galactose-6-pho 66.6 6.2 0.00013 26.8 2.5 20 9-30 15-34 (141)
448 PRK08410 2-hydroxyacid dehydro 66.5 23 0.00051 27.4 6.0 84 21-115 144-229 (311)
449 PRK12613 galactose-6-phosphate 66.3 6.4 0.00014 26.8 2.5 57 10-68 16-80 (141)
450 cd08242 MDR_like Medium chain 66.2 56 0.0012 24.9 9.3 89 19-118 153-245 (319)
451 PLN02712 arogenate dehydrogena 66.1 42 0.00091 29.2 7.9 82 22-112 52-137 (667)
452 PLN02819 lysine-ketoglutarate 65.7 13 0.00028 33.9 4.9 68 21-88 568-657 (1042)
453 COG2084 MmsB 3-hydroxyisobutyr 65.6 20 0.00044 27.5 5.3 82 31-118 7-95 (286)
454 PRK06153 hypothetical protein; 65.6 14 0.00031 29.6 4.7 38 11-52 169-207 (393)
455 PRK00045 hemA glutamyl-tRNA re 65.3 74 0.0016 25.9 10.6 100 20-124 180-284 (423)
456 PLN02688 pyrroline-5-carboxyla 64.7 49 0.0011 24.7 7.4 85 24-115 2-92 (266)
457 COG0240 GpsA Glycerol-3-phosph 64.7 48 0.001 26.1 7.2 96 23-123 2-110 (329)
458 TIGR01035 hemA glutamyl-tRNA r 64.6 76 0.0016 25.8 10.0 100 19-124 177-281 (417)
459 PRK07680 late competence prote 64.5 42 0.00091 25.3 7.0 86 24-115 2-93 (273)
460 COG1052 LdhA Lactate dehydroge 64.5 17 0.00036 28.5 4.8 84 22-115 146-233 (324)
461 PRK10458 DNA cytosine methylas 64.4 83 0.0018 26.1 9.3 36 22-58 88-124 (467)
462 PRK09599 6-phosphogluconate de 64.2 40 0.00086 25.9 6.9 84 24-115 2-91 (301)
463 TIGR01692 HIBADH 3-hydroxyisob 64.1 39 0.00084 25.7 6.8 79 31-115 3-87 (288)
464 KOG1227 Putative methyltransfe 64.1 2 4.3E-05 33.0 -0.3 94 22-121 195-300 (351)
465 PF06690 DUF1188: Protein of u 63.6 60 0.0013 24.3 7.2 97 9-121 30-129 (252)
466 PF01555 N6_N4_Mtase: DNA meth 63.3 3.5 7.6E-05 29.7 0.9 20 98-117 36-55 (231)
467 PRK08621 galactose-6-phosphate 62.5 7.4 0.00016 26.5 2.3 59 8-68 14-81 (142)
468 PRK05562 precorrin-2 dehydroge 61.9 38 0.00083 25.0 6.0 65 21-86 24-92 (223)
469 PLN03154 putative allyl alcoho 61.3 77 0.0017 24.8 10.2 91 19-119 156-259 (348)
470 PRK06932 glycerate dehydrogena 61.1 22 0.00048 27.6 5.0 82 22-115 147-230 (314)
471 PRK06223 malate dehydrogenase; 60.8 74 0.0016 24.4 8.3 94 23-118 3-119 (307)
472 PTZ00075 Adenosylhomocysteinas 60.7 28 0.00061 28.8 5.6 96 10-118 242-341 (476)
473 PF14258 DUF4350: Domain of un 60.7 15 0.00033 21.2 3.2 18 100-117 52-69 (70)
474 PRK07679 pyrroline-5-carboxyla 60.3 61 0.0013 24.5 7.2 88 23-116 4-97 (279)
475 COG4017 Uncharacterized protei 60.3 53 0.0011 23.9 6.2 70 19-94 42-114 (254)
476 PF01795 Methyltransf_5: MraW 60.2 6.1 0.00013 30.7 1.7 25 96-120 219-243 (310)
477 PRK07340 ornithine cyclodeamin 60.1 41 0.0009 26.0 6.3 101 13-124 117-223 (304)
478 PRK09496 trkA potassium transp 60.1 25 0.00055 28.5 5.4 52 22-75 231-286 (453)
479 TIGR00872 gnd_rel 6-phosphoglu 59.8 77 0.0017 24.3 8.9 82 24-114 2-89 (298)
480 PF03721 UDPG_MGDP_dh_N: UDP-g 59.6 25 0.00054 25.0 4.7 93 24-116 2-118 (185)
481 cd08296 CAD_like Cinnamyl alco 59.5 79 0.0017 24.3 8.0 94 15-119 158-260 (333)
482 PLN02586 probable cinnamyl alc 59.2 86 0.0019 24.6 10.5 91 19-119 181-279 (360)
483 PRK06718 precorrin-2 dehydroge 58.9 34 0.00073 24.7 5.3 63 21-86 9-77 (202)
484 KOG2078 tRNA modification enzy 58.6 5.2 0.00011 32.4 1.1 43 19-63 247-290 (495)
485 PF08484 Methyltransf_14: C-me 58.0 60 0.0013 22.5 7.0 89 20-116 66-157 (160)
486 cd08301 alcohol_DH_plants Plan 57.7 91 0.002 24.5 8.9 94 19-120 185-291 (369)
487 PRK12439 NAD(P)H-dependent gly 57.7 68 0.0015 25.2 7.2 37 79-120 77-113 (341)
488 cd08278 benzyl_alcohol_DH Benz 57.3 93 0.002 24.4 9.2 92 19-119 184-286 (365)
489 PRK11199 tyrA bifunctional cho 57.1 53 0.0012 26.2 6.6 72 22-114 98-171 (374)
490 PRK10537 voltage-gated potassi 56.9 43 0.00093 27.0 6.0 87 22-117 240-335 (393)
491 KOG0780 Signal recognition par 56.8 71 0.0015 26.0 7.0 101 21-121 100-225 (483)
492 PRK10083 putative oxidoreducta 56.8 72 0.0016 24.5 7.3 92 19-119 158-260 (339)
493 PF01206 TusA: Sulfurtransfera 56.3 37 0.0008 19.5 6.3 51 98-177 14-64 (70)
494 COG1568 Predicted methyltransf 56.0 33 0.00071 26.4 4.9 89 22-118 153-260 (354)
495 COG0059 IlvC Ketol-acid reduct 55.9 70 0.0015 25.0 6.6 90 21-118 17-109 (338)
496 TIGR02441 fa_ox_alpha_mit fatt 55.6 45 0.00097 29.4 6.4 95 21-120 334-452 (737)
497 cd05285 sorbitol_DH Sorbitol d 55.1 96 0.0021 23.9 10.2 92 19-118 160-265 (343)
498 COG1893 ApbA Ketopantoate redu 54.4 1E+02 0.0022 24.0 8.4 89 23-119 1-102 (307)
499 PRK15182 Vi polysaccharide bio 54.2 99 0.0021 25.3 7.8 38 22-61 6-45 (425)
500 TIGR02133 RPI_actino ribose 5- 53.8 7.9 0.00017 26.6 1.3 58 9-68 15-84 (148)
No 1
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.95 E-value=6.6e-27 Score=175.72 Aligned_cols=181 Identities=54% Similarity=0.916 Sum_probs=160.0
Q ss_pred ccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-CCceEEEcccCccCCCCCE
Q 030025 4 HTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-PGVKHVGGDMFQSVPNGDA 82 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-~~i~~~~~d~~~~~~~~D~ 82 (184)
.+..+..++++.+..|+.....+|+|+|+|..+..++..+|+++++.+|++..++.+... ++|+.+-+|+++..|.+|+
T Consensus 160 l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~da 239 (342)
T KOG3178|consen 160 LSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDA 239 (342)
T ss_pred HHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCcCe
Confidence 445566677777777888999999999999999999999999999999999999999888 9999999999998888899
Q ss_pred EEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC-CCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHH
Q 030025 83 ILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE-LPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLAT 161 (184)
Q Consensus 83 i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (184)
|++-+++|||+|++..++|+++++.|+|||++++.|...+. ..............++.++....++..++.++++.++.
T Consensus 240 I~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~ 319 (342)
T KOG3178|consen 240 IWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLP 319 (342)
T ss_pred EEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcch
Confidence 99999999999999999999999999999999999998775 22222234555677777877777799999999999999
Q ss_pred HcCCceeEEEeecCceEEEEEeC
Q 030025 162 EAGFSGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 162 ~aGf~~i~~~~~~~~~~~~~~~~ 184 (184)
++||...++......+++|+++|
T Consensus 320 ~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 320 EEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred hhcCceeEEEeccCccchheeCC
Confidence 99999999999999999999987
No 2
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.94 E-value=4.2e-26 Score=169.09 Aligned_cols=150 Identities=37% Similarity=0.734 Sum_probs=126.3
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCccCCCCCEEEechhh
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWIL 89 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l 89 (184)
..+...+. +++..+|||||+|+|.++..+++++|+++++.+|+|.+++.+++.++++++.+|+++++|.+|++++.+++
T Consensus 90 ~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D~~~l~~vL 168 (241)
T PF00891_consen 90 DILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVADVYLLRHVL 168 (241)
T ss_dssp HHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSESEEEEESSG
T ss_pred hhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhccccceeeehhh
Confidence 56666766 99999999999999999999999999999999999999988888889999999999888879999999999
Q ss_pred hcCChHHHHHHHHHHHhhCCCC--cEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHH
Q 030025 90 HDWSDEHCLKLLKNCHKSIPEG--GKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLAT 161 (184)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~L~pg--G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (184)
|+|++++...+|+++++.|+|| |+|+|.|...++....+.........++.++... +++.||.++|.++|+
T Consensus 169 h~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~G~~rt~~e~~~ll~ 241 (241)
T PF00891_consen 169 HDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLT-GGKERTEEEWEALLK 241 (241)
T ss_dssp GGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHH-SSS-EEHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhc-CCCCcCHHHHHHHhC
Confidence 9999999999999999999999 9999999998876544332212246777777765 589999999999985
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.93 E-value=8e-25 Score=167.46 Aligned_cols=160 Identities=19% Similarity=0.428 Sum_probs=123.4
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-------CCceEEEcccCc-cCC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-------PGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-------~~i~~~~~d~~~-~~~ 78 (184)
...+.+++.+. +++..+|||||||+|.++..+++++|+++++++|.+.+++.++++ ++++++.+|+.+ +++
T Consensus 136 ~~~~~l~~~~~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~ 214 (306)
T TIGR02716 136 FAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP 214 (306)
T ss_pred hHHHHHHHHcC-CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC
Confidence 34566777776 888899999999999999999999999999999998888777543 579999999986 666
Q ss_pred CCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhh--CCCccccCHHHH
Q 030025 79 NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQ--YPGGKERTKHEF 156 (184)
Q Consensus 79 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 156 (184)
.+|+|++.+++|++++++...+|+++++.|+|||++++.|...++... +... .......... .......+.++|
T Consensus 215 ~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~e~ 290 (306)
T TIGR02716 215 EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPEN-PNFD---YLSHYILGAGMPFSVLGFKEQARY 290 (306)
T ss_pred CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC-chhh---HHHHHHHHcccccccccCCCHHHH
Confidence 669999999999998887789999999999999999999987755321 1111 1111110000 001123458999
Q ss_pred HHHHHHcCCceeEEE
Q 030025 157 TTLATEAGFSGIRFV 171 (184)
Q Consensus 157 ~~~l~~aGf~~i~~~ 171 (184)
.++|+++||+.++++
T Consensus 291 ~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 291 KEILESLGYKDVTMV 305 (306)
T ss_pred HHHHHHcCCCeeEec
Confidence 999999999988765
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.93 E-value=2.5e-24 Score=156.71 Aligned_cols=175 Identities=19% Similarity=0.262 Sum_probs=133.0
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-c
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-S 76 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~ 76 (184)
...+.+.+.+.+. ..++.+|||||||||..+..+++..+..+++++|. +.|++.++++ .+++|+.+|+++ |
T Consensus 36 ~~~Wr~~~i~~~~-~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP 114 (238)
T COG2226 36 HRLWRRALISLLG-IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP 114 (238)
T ss_pred hHHHHHHHHHhhC-CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC
Confidence 4567788888887 66899999999999999999999998999999999 9999999876 238999999999 9
Q ss_pred CCCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhh-hHhhhh---------
Q 030025 77 VPNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLAD-VLVMTQ--------- 144 (184)
Q Consensus 77 ~~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------- 144 (184)
+++. |++++++.++++++.+ ++|++++|+|||||++++.|...+........... .... ......
T Consensus 115 f~D~sFD~vt~~fglrnv~d~~--~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~-~~~~~v~P~~g~~~~~~~~~ 191 (238)
T COG2226 115 FPDNSFDAVTISFGLRNVTDID--KALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYIL-YYFKYVLPLIGKLVAKDAEA 191 (238)
T ss_pred CCCCccCEEEeeehhhcCCCHH--HHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHH-HHHHhHhhhhceeeecChHH
Confidence 9876 9999999999999776 78999999999999999999887654221110000 0001 111000
Q ss_pred -----CCCccccCHHHHHHHHHHcCCceeEEEeec-CceEEEEEe
Q 030025 145 -----YPGGKERTKHEFTTLATEAGFSGIRFVCFF-HNLWVMEFY 183 (184)
Q Consensus 145 -----~~~~~~~~~~~~~~~l~~aGf~~i~~~~~~-~~~~~~~~~ 183 (184)
...-+..+.+++.+.++++||+.+...... +...+....
T Consensus 192 y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~ 236 (238)
T COG2226 192 YEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGY 236 (238)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEe
Confidence 001123489999999999999999866554 444444443
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.91 E-value=7.3e-25 Score=160.72 Aligned_cols=169 Identities=18% Similarity=0.310 Sum_probs=87.9
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SV 77 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~ 77 (184)
.+.+.+++... ..++.+|||+|||||..+..+++.. +..+++++|. +.|++.|+++ .+++++++|+++ ++
T Consensus 34 ~wr~~~~~~~~-~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~ 112 (233)
T PF01209_consen 34 RWRRKLIKLLG-LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPF 112 (233)
T ss_dssp ---SHHHHHHT---S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S
T ss_pred HHHHHHHhccC-CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcC
Confidence 34556667666 7788899999999999999999884 6789999999 9999999864 589999999998 88
Q ss_pred CCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhh-----------
Q 030025 78 PNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQ----------- 144 (184)
Q Consensus 78 ~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 144 (184)
++. |+|++++.++++++.+ +.+++++|+|||||++++.|...+... .....+.++....
T Consensus 113 ~d~sfD~v~~~fglrn~~d~~--~~l~E~~RVLkPGG~l~ile~~~p~~~------~~~~~~~~y~~~ilP~~g~l~~~~ 184 (233)
T PF01209_consen 113 PDNSFDAVTCSFGLRNFPDRE--RALREMYRVLKPGGRLVILEFSKPRNP------LLRALYKFYFKYILPLIGRLLSGD 184 (233)
T ss_dssp -TT-EEEEEEES-GGG-SSHH--HHHHHHHHHEEEEEEEEEEEEEB-SSH------HHHHHHHH----------------
T ss_pred CCCceeEEEHHhhHHhhCCHH--HHHHHHHHHcCCCeEEEEeeccCCCCc------hhhceeeeeecccccccccccccc
Confidence 765 9999999999998765 689999999999999999999877641 1111111111000
Q ss_pred --------CCCccccCHHHHHHHHHHcCCceeEEEeec-CceEEEEEeC
Q 030025 145 --------YPGGKERTKHEFTTLATEAGFSGIRFVCFF-HNLWVMEFYK 184 (184)
Q Consensus 145 --------~~~~~~~~~~~~~~~l~~aGf~~i~~~~~~-~~~~~~~~~~ 184 (184)
..-.++.+.+++.++++++||+.++.+... +...+..++|
T Consensus 185 ~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 185 REAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp -------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 001134588999999999999999887765 4444555544
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.91 E-value=6.4e-23 Score=153.40 Aligned_cols=166 Identities=16% Similarity=0.162 Sum_probs=119.8
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC---------CCceEEEcccCc-cC
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY---------PGVKHVGGDMFQ-SV 77 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~---------~~i~~~~~d~~~-~~ 77 (184)
..+++.+. ..+..+|||+|||+|.++..+++.. +..+++++|+ +.|++.|+++ ++++++.+|+.+ ++
T Consensus 63 ~~~~~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~ 141 (261)
T PLN02233 63 RMAVSWSG-AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF 141 (261)
T ss_pred HHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC
Confidence 34445555 7778899999999999999998874 5679999999 9999988643 478999999988 77
Q ss_pred CCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCcc-ccchhh-----------hhhHhhh
Q 030025 78 PNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTH-SKINSL-----------ADVLVMT 143 (184)
Q Consensus 78 ~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~~ 143 (184)
++. |+|++..++||+++++ .++++++|+|||||++++.|...+........ .+.... ...+...
T Consensus 142 ~~~sfD~V~~~~~l~~~~d~~--~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l 219 (261)
T PLN02233 142 DDCYFDAITMGYGLRNVVDRL--KAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYL 219 (261)
T ss_pred CCCCEeEEEEecccccCCCHH--HHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHH
Confidence 654 9999999999998764 78999999999999999999876542110000 000000 0000000
Q ss_pred hCCCccccCHHHHHHHHHHcCCceeEEEeecCceE
Q 030025 144 QYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLW 178 (184)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~~~~~~ 178 (184)
...-.++++.+++.++++++||+.++......+..
T Consensus 220 ~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~ 254 (261)
T PLN02233 220 KSSINEYLTGEELEKLALEAGFSSAKHYEISGGLM 254 (261)
T ss_pred HHHHHhcCCHHHHHHHHHHCCCCEEEEEEcCCCee
Confidence 00012356999999999999999998887654433
No 7
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.90 E-value=2.7e-22 Score=150.21 Aligned_cols=158 Identities=16% Similarity=0.233 Sum_probs=122.4
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEcccCc-cCCCC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQ-SVPNG 80 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~-~~~~~ 80 (184)
...+.+++.+. +.+..+|||||||+|..+..+++.+ .++++++|+ +.+++.++++ +++.++..|+.+ +++..
T Consensus 39 ~~~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~ 116 (263)
T PTZ00098 39 EATTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPEN 116 (263)
T ss_pred HHHHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCC
Confidence 34678888887 8899999999999999999998765 579999999 8888887753 579999999987 66643
Q ss_pred --CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHH
Q 030025 81 --DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTT 158 (184)
Q Consensus 81 --D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
|+|++..+++|++..+...++++++++|||||++++.+.......... ...... .. .......+..++.+
T Consensus 117 ~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~-----~~~~~~--~~-~~~~~~~~~~~~~~ 188 (263)
T PTZ00098 117 TFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWD-----EEFKAY--IK-KRKYTLIPIQEYGD 188 (263)
T ss_pred CeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcH-----HHHHHH--HH-hcCCCCCCHHHHHH
Confidence 999999999998865667999999999999999999987654321110 011110 00 11123458999999
Q ss_pred HHHHcCCceeEEEeec
Q 030025 159 LATEAGFSGIRFVCFF 174 (184)
Q Consensus 159 ~l~~aGf~~i~~~~~~ 174 (184)
+++++||+.+++....
T Consensus 189 ~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 189 LIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHHCCCCeeeEEeCc
Confidence 9999999999887653
No 8
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.90 E-value=2.1e-23 Score=154.46 Aligned_cols=152 Identities=16% Similarity=0.180 Sum_probs=115.3
Q ss_pred CCCCeEEEecCCcChHHHHHHhhC--CCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cCCCCCEEEechh
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKY--PHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SVPNGDAILIKWI 88 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~~~~D~i~~~~~ 88 (184)
++..+|||+|||+|..+..+++++ |+++++++|+ +.|++.|+++ .+++++.+|+.+ +++..|+|++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 567899999999999999999874 7899999999 9999888653 368999999987 6665699999999
Q ss_pred hhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhh-----------------hCCCcccc
Q 030025 89 LHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMT-----------------QYPGGKER 151 (184)
Q Consensus 89 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 151 (184)
+||+++++...+++++++.|+|||.+++.|.......... . ......... .......+
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~--~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 206 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKIN--H---LLIDLHHQFKRANGYSELEISQKRTALENVMRTD 206 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHH--H---HHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCC
Confidence 9999887778999999999999999999997654322111 0 011110000 00012356
Q ss_pred CHHHHHHHHHHcCCceeEEEeecCc
Q 030025 152 TKHEFTTLATEAGFSGIRFVCFFHN 176 (184)
Q Consensus 152 ~~~~~~~~l~~aGf~~i~~~~~~~~ 176 (184)
+.+++.++++++||+.++.......
T Consensus 207 s~~~~~~~l~~aGF~~~~~~~~~~~ 231 (239)
T TIGR00740 207 SIETHKARLKNVGFSHVELWFQCFN 231 (239)
T ss_pred CHHHHHHHHHHcCCchHHHHHHHHh
Confidence 9999999999999998776544333
No 9
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.89 E-value=3.1e-23 Score=154.09 Aligned_cols=152 Identities=18% Similarity=0.212 Sum_probs=113.1
Q ss_pred CCCCeEEEecCCcChHHHHHHhh--CCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cCCCCCEEEechh
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSK--YPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SVPNGDAILIKWI 88 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~--~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~~~~D~i~~~~~ 88 (184)
++..+|||||||+|..+..+++. .|.++++++|. +.|++.|+++ .+++++.+|+.+ +.+..|+|++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 56789999999999999998884 58899999999 9999998764 379999999987 5555699999999
Q ss_pred hhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhh-h-----------hHhh--hhCCCccccCHH
Q 030025 89 LHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLA-D-----------VLVM--TQYPGGKERTKH 154 (184)
Q Consensus 89 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~-~-----------~~~~--~~~~~~~~~~~~ 154 (184)
+||+++++...+++++++.|||||.+++.|........... ...... . +... .........+.+
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~--~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~ 212 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGE--LLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVE 212 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHH
Confidence 99998777789999999999999999999976543211110 000000 0 0000 000011235899
Q ss_pred HHHHHHHHcCCceeEEEee
Q 030025 155 EFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 155 ~~~~~l~~aGf~~i~~~~~ 173 (184)
+..++|+++||+.++....
T Consensus 213 ~~~~~L~~aGF~~v~~~~~ 231 (247)
T PRK15451 213 THKARLHKAGFEHSELWFQ 231 (247)
T ss_pred HHHHHHHHcCchhHHHHHH
Confidence 9999999999998765543
No 10
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.89 E-value=5e-22 Score=146.41 Aligned_cols=173 Identities=16% Similarity=0.191 Sum_probs=126.1
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SV 77 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~ 77 (184)
...+.+++.+. +++..+|||+|||+|.++..+++.. +..+++++|+ +.+++.+++. ++++++.+|+.+ ++
T Consensus 32 ~~~~~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 110 (231)
T TIGR02752 32 KWRKDTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPF 110 (231)
T ss_pred HHHHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCC
Confidence 34567888887 8888999999999999999999885 6789999999 8898877653 578999999987 55
Q ss_pred CCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhh----h-----------hH
Q 030025 78 PNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLA----D-----------VL 140 (184)
Q Consensus 78 ~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~----~-----------~~ 140 (184)
+.. |+|++..++|++++.. .+++++.++|+|||++++.+...+.... ......... . ..
T Consensus 111 ~~~~fD~V~~~~~l~~~~~~~--~~l~~~~~~Lk~gG~l~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~ 186 (231)
T TIGR02752 111 DDNSFDYVTIGFGLRNVPDYM--QVLREMYRVVKPGGKVVCLETSQPTIPG--FKQLYFFYFKYIMPLFGKLFAKSYKEY 186 (231)
T ss_pred CCCCccEEEEecccccCCCHH--HHHHHHHHHcCcCeEEEEEECCCCCChH--HHHHHHHHHcChhHHhhHHhcCCHHHH
Confidence 543 9999999999988664 7899999999999999998765433210 000000000 0 00
Q ss_pred hhhhCCCccccCHHHHHHHHHHcCCceeEEEeec-CceEEEEEeC
Q 030025 141 VMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFF-HNLWVMEFYK 184 (184)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~~-~~~~~~~~~~ 184 (184)
..........++.+++.++++++||+.++++... +...+..++|
T Consensus 187 ~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 187 SWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 0000001234588999999999999999988765 6666777765
No 11
>PLN02244 tocopherol O-methyltransferase
Probab=99.89 E-value=9e-22 Score=152.35 Aligned_cols=163 Identities=18% Similarity=0.260 Sum_probs=119.2
Q ss_pred HHhHHHHHHHhcCC-----CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcc
Q 030025 6 TLVLQKILEAYKGF-----EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGD 72 (184)
Q Consensus 6 ~~~~~~l~~~~~~~-----~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d 72 (184)
..+...+++.+. + .+..+|||||||+|.++..+++++ +.+++++|+ +.|++.+++. +++.++.+|
T Consensus 99 ~~~~~~~l~~~~-~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D 176 (340)
T PLN02244 99 IRMIEESLAWAG-VPDDDEKRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVAD 176 (340)
T ss_pred HHHHHHHHHhcC-CCcccCCCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcC
Confidence 345667777776 5 567899999999999999999987 679999999 8888877652 479999999
Q ss_pred cCc-cCCCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCc--cccchhhhhhHhhhhCCC
Q 030025 73 MFQ-SVPNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGT--HSKINSLADVLVMTQYPG 147 (184)
Q Consensus 73 ~~~-~~~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 147 (184)
+.+ +++.. |+|++..++||+++.. .++++++++|||||++++.+........... .............. ...
T Consensus 177 ~~~~~~~~~~FD~V~s~~~~~h~~d~~--~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~ 253 (340)
T PLN02244 177 ALNQPFEDGQFDLVWSMESGEHMPDKR--KFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAA-YYL 253 (340)
T ss_pred cccCCCCCCCccEEEECCchhccCCHH--HHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhh-ccC
Confidence 987 66644 9999999999998764 7899999999999999998875433211110 00000011111100 111
Q ss_pred ccccCHHHHHHHHHHcCCceeEEEee
Q 030025 148 GKERTKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 148 ~~~~~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
....+.+++.++++++||..+++...
T Consensus 254 p~~~s~~~~~~~l~~aGf~~v~~~d~ 279 (340)
T PLN02244 254 PAWCSTSDYVKLAESLGLQDIKTEDW 279 (340)
T ss_pred CCCCCHHHHHHHHHHCCCCeeEeeeC
Confidence 22358999999999999999987654
No 12
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.89 E-value=4.2e-22 Score=148.83 Aligned_cols=156 Identities=20% Similarity=0.247 Sum_probs=113.7
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCC-CC-CEE
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVP-NG-DAI 83 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~-~~-D~i 83 (184)
.....+++.++ ..+..+|||||||+|.++..+++++|..+++++|+ +.|++.+++. +++++.+|+.+..+ .. |+|
T Consensus 16 ~~~~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~fD~v 93 (255)
T PRK14103 16 RPFYDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-GVDARTGDVRDWKPKPDTDVV 93 (255)
T ss_pred CHHHHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-CCcEEEcChhhCCCCCCceEE
Confidence 34577888887 77889999999999999999999998899999999 9999988764 68999999876322 23 999
Q ss_pred EechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchh------hhhhH-hhhhCCCccccCHHHH
Q 030025 84 LIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINS------LADVL-VMTQYPGGKERTKHEF 156 (184)
Q Consensus 84 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~ 156 (184)
+++.++||+++++ .+++++++.|||||++++..+.... ......... +.... ...........+.+++
T Consensus 94 ~~~~~l~~~~d~~--~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 168 (255)
T PRK14103 94 VSNAALQWVPEHA--DLLVRWVDELAPGSWIAVQVPGNFD---APSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGY 168 (255)
T ss_pred EEehhhhhCCCHH--HHHHHHHHhCCCCcEEEEEcCCCcC---ChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHH
Confidence 9999999998764 7899999999999999986432111 000000000 00000 0000111234589999
Q ss_pred HHHHHHcCCceeE
Q 030025 157 TTLATEAGFSGIR 169 (184)
Q Consensus 157 ~~~l~~aGf~~i~ 169 (184)
.++|+++||++..
T Consensus 169 ~~~l~~aGf~v~~ 181 (255)
T PRK14103 169 AELLTDAGCKVDA 181 (255)
T ss_pred HHHHHhCCCeEEE
Confidence 9999999998543
No 13
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.88 E-value=1.3e-21 Score=144.92 Aligned_cols=161 Identities=19% Similarity=0.218 Sum_probs=132.0
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS 76 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~ 76 (184)
+..-.+.+++++. ++++++|||||||+|.++..+++++ +++++|+++ +++.+.++++ .++++...|..+.
T Consensus 57 Q~~k~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~ 134 (283)
T COG2230 57 QRAKLDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF 134 (283)
T ss_pred HHHHHHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc
Confidence 4455778889998 9999999999999999999999999 899999999 7788877763 4788998988874
Q ss_pred CCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHH
Q 030025 77 VPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEF 156 (184)
Q Consensus 77 ~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
.+..|-|++..+++|+..+....+|+++++.|+|||++++.....++.... ....+.....++++..++..++
T Consensus 135 ~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-------~~~~~i~~yiFPgG~lPs~~~i 207 (283)
T COG2230 135 EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-------RFPDFIDKYIFPGGELPSISEI 207 (283)
T ss_pred ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-------cchHHHHHhCCCCCcCCCHHHH
Confidence 444699999999999998877899999999999999999988877654221 1222233333678888899999
Q ss_pred HHHHHHcCCceeEEEeec
Q 030025 157 TTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 157 ~~~l~~aGf~~i~~~~~~ 174 (184)
.+..+++||.+.......
T Consensus 208 ~~~~~~~~~~v~~~~~~~ 225 (283)
T COG2230 208 LELASEAGFVVLDVESLR 225 (283)
T ss_pred HHHHHhcCcEEehHhhhc
Confidence 999999999988766543
No 14
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.87 E-value=1.3e-20 Score=144.43 Aligned_cols=154 Identities=23% Similarity=0.298 Sum_probs=117.7
Q ss_pred cHHhHHHHHHHhcCC-CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---CCceEEEcccCc-cCC
Q 030025 5 TTLVLQKILEAYKGF-EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---PGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~-~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~i~~~~~d~~~-~~~ 78 (184)
...+.+.+++.+. + .+..+|||||||+|..+..+++..+..+++++|. +.|++.++++ .+++++.+|+.+ +++
T Consensus 97 ~e~~r~~~l~~~~-l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~ 175 (340)
T PLN02490 97 TEDMRDDALEPAD-LSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFP 175 (340)
T ss_pred hHHHHHHHHhhcc-cCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCC
Confidence 3445556666665 4 3567999999999999999999887789999999 8999888764 578999999987 655
Q ss_pred CC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHH
Q 030025 79 NG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEF 156 (184)
Q Consensus 79 ~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
.. |+|++..++|++++++ .++++++++|+|||++++.+...+.... .....+.. ....+.+++
T Consensus 176 ~~sFDvVIs~~~L~~~~d~~--~~L~e~~rvLkPGG~LvIi~~~~p~~~~------~r~~~~~~-------~~~~t~eEl 240 (340)
T PLN02490 176 TDYADRYVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACLIGPVHPTFWL------SRFFADVW-------MLFPKEEEY 240 (340)
T ss_pred CCceeEEEEcChhhhCCCHH--HHHHHHHHhcCCCcEEEEEEecCcchhH------HHHhhhhh-------ccCCCHHHH
Confidence 43 9999999999998775 6899999999999999987754432100 00001110 112478999
Q ss_pred HHHHHHcCCceeEEEeec
Q 030025 157 TTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 157 ~~~l~~aGf~~i~~~~~~ 174 (184)
.++++++||+.+++....
T Consensus 241 ~~lL~~aGF~~V~i~~i~ 258 (340)
T PLN02490 241 IEWFTKAGFKDVKLKRIG 258 (340)
T ss_pred HHHHHHCCCeEEEEEEcC
Confidence 999999999999887654
No 15
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.86 E-value=4.8e-21 Score=143.53 Aligned_cols=165 Identities=15% Similarity=0.153 Sum_probs=116.0
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS 76 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~ 76 (184)
+..-.+.+++++. ++++.+|||||||+|.++..+++++ +++++++.+ ++..+.++++ +++++...|+.+.
T Consensus 47 Q~~k~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~ 124 (273)
T PF02353_consen 47 QERKLDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL 124 (273)
T ss_dssp HHHHHHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-
T ss_pred HHHHHHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc
Confidence 4455778888998 9999999999999999999999998 789999999 7777766542 5689999998763
Q ss_pred CCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHH
Q 030025 77 VPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEF 156 (184)
Q Consensus 77 ~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
-+..|.|++..+++|++.+....+|+++.++|||||++++............... ...+.......+++...+..++
T Consensus 125 ~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~---~~~~~i~kyiFPgg~lps~~~~ 201 (273)
T PF02353_consen 125 PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERR---SSSDFIRKYIFPGGYLPSLSEI 201 (273)
T ss_dssp --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTT---CCCHHHHHHTSTTS---BHHHH
T ss_pred CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcC---CCceEEEEeeCCCCCCCCHHHH
Confidence 3345999999999999887778999999999999999999877765431110000 0012333333577888899999
Q ss_pred HHHHHHcCCceeEEEeec
Q 030025 157 TTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 157 ~~~l~~aGf~~i~~~~~~ 174 (184)
...++++||++..+....
T Consensus 202 ~~~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 202 LRAAEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHHHHTT-EEEEEEE-H
T ss_pred HHHHhcCCEEEEEEEEcC
Confidence 999999999988877654
No 16
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.86 E-value=3.8e-21 Score=135.32 Aligned_cols=169 Identities=15% Similarity=0.219 Sum_probs=125.1
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-CCceEEEcccCccCCC--CCEEE
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQSVPN--GDAIL 84 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~~~~~--~D~i~ 84 (184)
+.+++.+.+ ..+..+|.|+|||+|..+..+++++|...++|+|. ++|++.|+++ ++++|..+|+.+..|. .|+++
T Consensus 19 a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllf 97 (257)
T COG4106 19 ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLF 97 (257)
T ss_pred HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhh
Confidence 567888888 89999999999999999999999999999999999 9999999776 9999999999884443 39999
Q ss_pred echhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhh---hH-hhhhC--CCccccCHHHHHH
Q 030025 85 IKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLAD---VL-VMTQY--PGGKERTKHEFTT 158 (184)
Q Consensus 85 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~--~~~~~~~~~~~~~ 158 (184)
++.+||++++. .++|.++...|.|||.|-+.-+.. ...+.........+ .. .+... ......++..+.+
T Consensus 98 aNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQmPdN---~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~ 172 (257)
T COG4106 98 ANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQMPDN---LDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYE 172 (257)
T ss_pred hhhhhhhcccc--HHHHHHHHHhhCCCceEEEECCCc---cCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHH
Confidence 99999999865 489999999999999999855432 22222111111111 00 00000 0122348899999
Q ss_pred HHHHcCCceeEEEee------cCceEEEEEeC
Q 030025 159 LATEAGFSGIRFVCF------FHNLWVMEFYK 184 (184)
Q Consensus 159 ~l~~aGf~~i~~~~~------~~~~~~~~~~~ 184 (184)
+|...+ ..+.++.. .+...|++|.|
T Consensus 173 lLa~~~-~rvDiW~T~Y~h~l~~a~aIvdWvk 203 (257)
T COG4106 173 LLAPLA-CRVDIWHTTYYHQLPGADAIVDWVK 203 (257)
T ss_pred HhCccc-ceeeeeeeeccccCCCccchhhhee
Confidence 999887 44555543 26667777765
No 17
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.86 E-value=2.2e-20 Score=150.87 Aligned_cols=153 Identities=16% Similarity=0.264 Sum_probs=118.9
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-cCCCC
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-SVPNG 80 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~~~~~ 80 (184)
....+++.+. +++..+|||||||+|..+..+++.+ +++++++|+ +.+++.|+++ .++.++.+|+.+ +++..
T Consensus 254 ~te~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~ 331 (475)
T PLN02336 254 TTKEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDN 331 (475)
T ss_pred HHHHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCC
Confidence 4566778877 7788899999999999999998876 679999999 8898887653 468999999987 55543
Q ss_pred --CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHH
Q 030025 81 --DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTT 158 (184)
Q Consensus 81 --D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
|+|++..+++|+++++ .++++++++|||||++++.+.......... . ...... ..+...++..++.+
T Consensus 332 ~fD~I~s~~~l~h~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~---~---~~~~~~---~~g~~~~~~~~~~~ 400 (475)
T PLN02336 332 SFDVIYSRDTILHIQDKP--ALFRSFFKWLKPGGKVLISDYCRSPGTPSP---E---FAEYIK---QRGYDLHDVQAYGQ 400 (475)
T ss_pred CEEEEEECCcccccCCHH--HHHHHHHHHcCCCeEEEEEEeccCCCCCcH---H---HHHHHH---hcCCCCCCHHHHHH
Confidence 9999999999998765 789999999999999999987654321111 0 111111 11334668999999
Q ss_pred HHHHcCCceeEEEee
Q 030025 159 LATEAGFSGIRFVCF 173 (184)
Q Consensus 159 ~l~~aGf~~i~~~~~ 173 (184)
+++++||+.+++...
T Consensus 401 ~l~~aGF~~i~~~d~ 415 (475)
T PLN02336 401 MLKDAGFDDVIAEDR 415 (475)
T ss_pred HHHHCCCeeeeeecc
Confidence 999999999876543
No 18
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.85 E-value=4.8e-20 Score=140.29 Aligned_cols=155 Identities=12% Similarity=0.043 Sum_probs=110.3
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCC-------CCCCceEEEcccCc-cCCC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSP-------EYPGVKHVGGDMFQ-SVPN 79 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~-------~~~~i~~~~~d~~~-~~~~ 79 (184)
...++.++. ..++++|||||||+|.++..++...+ ..++|+|. +.|+..++ ...++.+...++.+ +...
T Consensus 110 ~~~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~ 187 (314)
T TIGR00452 110 WDRVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELY 187 (314)
T ss_pred HHHHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCC
Confidence 355677766 56678999999999999999988765 37999998 66765321 12567888888776 3333
Q ss_pred C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHH
Q 030025 80 G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTT 158 (184)
Q Consensus 80 ~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
. |+|++..+++|+.++. .+|+++++.|+|||.|++.+...+.......... +.+..... ....++.+++..
T Consensus 188 ~FD~V~s~gvL~H~~dp~--~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~-----~ry~k~~n-v~flpS~~~L~~ 259 (314)
T TIGR00452 188 AFDTVFSMGVLYHRKSPL--EHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPK-----DRYAKMKN-VYFIPSVSALKN 259 (314)
T ss_pred CcCEEEEcchhhccCCHH--HHHHHHHHhcCCCCEEEEEEEEecCccccccCch-----HHHHhccc-cccCCCHHHHHH
Confidence 4 9999999999998774 7899999999999999998876544321110000 00000000 112358999999
Q ss_pred HHHHcCCceeEEEee
Q 030025 159 LATEAGFSGIRFVCF 173 (184)
Q Consensus 159 ~l~~aGf~~i~~~~~ 173 (184)
+++++||+.+++...
T Consensus 260 ~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 260 WLEKVGFENFRILDV 274 (314)
T ss_pred HHHHCCCeEEEEEec
Confidence 999999999987654
No 19
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.85 E-value=1.6e-20 Score=130.74 Aligned_cols=136 Identities=19% Similarity=0.268 Sum_probs=98.4
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-cCC-CC-CEEEechhhhcCCh
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-SVP-NG-DAILIKWILHDWSD 94 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~-~~-D~i~~~~~l~~~~~ 94 (184)
..+.++|||||||+|.++..+.+.. .+++++|. +.+++. .++.....+... +.+ +. |+|+++.++||+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 5688999999999999999997763 39999999 888877 334444443333 222 23 99999999999997
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhh-CCCccccCHHHHHHHHHHcCCceeE
Q 030025 95 EHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQ-YPGGKERTKHEFTTLATEAGFSGIR 169 (184)
Q Consensus 95 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~aGf~~i~ 169 (184)
+. .+++++.+.|||||++++.++...... ............ ......++.++|.++++++||++++
T Consensus 94 ~~--~~l~~l~~~LkpgG~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 PE--EFLKELSRLLKPGGYLVISDPNRDDPS-------PRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HH--HHHHHHHHCEEEEEEEEEEEEBTTSHH-------HHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HH--HHHHHHHHhcCCCCEEEEEEcCCcchh-------hhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 54 899999999999999999998764310 000111000000 0234678999999999999999875
No 20
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.85 E-value=2.9e-20 Score=142.70 Aligned_cols=155 Identities=13% Similarity=0.088 Sum_probs=111.3
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCC-------CCCCceEEEcccCc-cCCC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSP-------EYPGVKHVGGDMFQ-SVPN 79 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~-------~~~~i~~~~~d~~~-~~~~ 79 (184)
.+.++.+++ .-++++|||||||+|.++..+++..+. .++|+|. +.++..++ ...++.++..|+.+ +.+.
T Consensus 111 ~~~l~~~l~-~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~ 188 (322)
T PRK15068 111 WDRVLPHLS-PLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALK 188 (322)
T ss_pred HHHHHHhhC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcC
Confidence 345566776 345689999999999999999998654 6999998 66664322 12579999999987 5544
Q ss_pred C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHH
Q 030025 80 G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTT 158 (184)
Q Consensus 80 ~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
. |+|++..++||+.++. .+|+++++.|+|||.+++.+...+......... .+.+... ......++.+++.+
T Consensus 189 ~FD~V~s~~vl~H~~dp~--~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p-----~~~y~~~-~~~~~lps~~~l~~ 260 (322)
T PRK15068 189 AFDTVFSMGVLYHRRSPL--DHLKQLKDQLVPGGELVLETLVIDGDENTVLVP-----GDRYAKM-RNVYFIPSVPALKN 260 (322)
T ss_pred CcCEEEECChhhccCCHH--HHHHHHHHhcCCCcEEEEEEEEecCCCccccCc-----hhHHhcC-ccceeCCCHHHHHH
Confidence 4 9999999999988764 789999999999999999876654432211100 0000000 00011348999999
Q ss_pred HHHHcCCceeEEEee
Q 030025 159 LATEAGFSGIRFVCF 173 (184)
Q Consensus 159 ~l~~aGf~~i~~~~~ 173 (184)
+++++||+.+++...
T Consensus 261 ~L~~aGF~~i~~~~~ 275 (322)
T PRK15068 261 WLERAGFKDVRIVDV 275 (322)
T ss_pred HHHHcCCceEEEEeC
Confidence 999999999988754
No 21
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.85 E-value=5.8e-21 Score=145.87 Aligned_cols=149 Identities=10% Similarity=0.017 Sum_probs=106.1
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cCCC-C-CEEEechhh
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SVPN-G-DAILIKWIL 89 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~~~-~-D~i~~~~~l 89 (184)
+..+|||||||+|.++..+++. +.+++++|. +.+++.|+++ .++.++++|+.+ +.+. . |+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 4569999999999999988864 679999999 8999888753 368999999876 4443 3 999999999
Q ss_pred hcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeE
Q 030025 90 HDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIR 169 (184)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~ 169 (184)
||+++++ .++++++++|||||.+++.+................................++++++.++++++||+.++
T Consensus 209 eHv~d~~--~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~ 286 (322)
T PLN02396 209 EHVANPA--EFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKE 286 (322)
T ss_pred HhcCCHH--HHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEE
Confidence 9999875 79999999999999999987653211000000000000000000000012467999999999999999988
Q ss_pred EEee
Q 030025 170 FVCF 173 (184)
Q Consensus 170 ~~~~ 173 (184)
+...
T Consensus 287 ~~G~ 290 (322)
T PLN02396 287 MAGF 290 (322)
T ss_pred Eeee
Confidence 7543
No 22
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.84 E-value=2.1e-19 Score=132.77 Aligned_cols=172 Identities=19% Similarity=0.225 Sum_probs=123.5
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-c
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-S 76 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~ 76 (184)
.....++..+. ..+..+|||+|||+|..+..+++..+ ..+++++|. +.+++.++++ +++.+...|+.+ +
T Consensus 38 ~~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 116 (239)
T PRK00216 38 VWRRKTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP 116 (239)
T ss_pred HHHHHHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC
Confidence 34455666666 56778999999999999999999886 689999999 8888777653 468899999887 4
Q ss_pred CCC--CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhh--h---HhhhhCC---
Q 030025 77 VPN--GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLAD--V---LVMTQYP--- 146 (184)
Q Consensus 77 ~~~--~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~--- 146 (184)
.+. .|+|++..++|++++.. .+++++.+.|+|||++++.+...+..... ........ . .......
T Consensus 117 ~~~~~~D~I~~~~~l~~~~~~~--~~l~~~~~~L~~gG~li~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 191 (239)
T PRK00216 117 FPDNSFDAVTIAFGLRNVPDID--KALREMYRVLKPGGRLVILEFSKPTNPPL---KKAYDFYLFKVLPLIGKLISKNAE 191 (239)
T ss_pred CCCCCccEEEEecccccCCCHH--HHHHHHHHhccCCcEEEEEEecCCCchHH---HHHHHHHHHhhhHHHHHHHcCCcH
Confidence 433 39999999999988664 78999999999999999988765432110 00000000 0 0000000
Q ss_pred --------CccccCHHHHHHHHHHcCCceeEEEeec-CceEEEEEeC
Q 030025 147 --------GGKERTKHEFTTLATEAGFSGIRFVCFF-HNLWVMEFYK 184 (184)
Q Consensus 147 --------~~~~~~~~~~~~~l~~aGf~~i~~~~~~-~~~~~~~~~~ 184 (184)
-...++.++|.++++++||+.+++.... +...++.++|
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 192 AYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 0123578999999999999999998865 5666776665
No 23
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.84 E-value=7.1e-20 Score=134.35 Aligned_cols=136 Identities=17% Similarity=0.292 Sum_probs=107.1
Q ss_pred CeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cCCCC-CEEEechhhhcC
Q 030025 23 KQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SVPNG-DAILIKWILHDW 92 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~~~~-D~i~~~~~l~~~ 92 (184)
++|||||||+|..+..+++.++.++++++|+ +.+++.++++ ++++++..|+.+ +.+.. |+|++..++||+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 4799999999999999999998899999999 8888877653 468999999866 55544 999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEe
Q 030025 93 SDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVC 172 (184)
Q Consensus 93 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~ 172 (184)
++. ..+|++++++|+|||++++.++.......... . .......+..+|.++++++||+.++...
T Consensus 81 ~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~--------~------~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 81 KDK--MDLFSNISRHLKDGGHLVLADFIANLLSAIEH--------E------ETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred CCH--HHHHHHHHHHcCCCCEEEEEEcccccCccccc--------c------ccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 875 47999999999999999999875432110000 0 0011235789999999999999998876
Q ss_pred ec
Q 030025 173 FF 174 (184)
Q Consensus 173 ~~ 174 (184)
..
T Consensus 145 ~~ 146 (224)
T smart00828 145 AS 146 (224)
T ss_pred Cc
Confidence 54
No 24
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.84 E-value=1.6e-19 Score=129.88 Aligned_cols=142 Identities=15% Similarity=0.144 Sum_probs=108.3
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cCCCC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SVPNG 80 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~~~~ 80 (184)
.+.+++.++ ..+..+|||+|||+|..+..++++ ..+++++|+ +.+++.+++. .++++...|+.+ +++..
T Consensus 19 ~~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 95 (197)
T PRK11207 19 HSEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGE 95 (197)
T ss_pred hHHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCC
Confidence 456777777 667799999999999999999986 469999999 8888877653 458888899876 55544
Q ss_pred -CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHH
Q 030025 81 -DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTL 159 (184)
Q Consensus 81 -D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
|+|++..++||+++++...++++++++|+|||++++.+.......... ......++.+++.++
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~----------------~~~~~~~~~~el~~~ 159 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT----------------VGFPFAFKEGELRRY 159 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC----------------CCCCCccCHHHHHHH
Confidence 999999999998877778999999999999999776554332211000 000123578899999
Q ss_pred HHHcCCceeEEE
Q 030025 160 ATEAGFSGIRFV 171 (184)
Q Consensus 160 l~~aGf~~i~~~ 171 (184)
++ ||+.++..
T Consensus 160 ~~--~~~~~~~~ 169 (197)
T PRK11207 160 YE--GWEMVKYN 169 (197)
T ss_pred hC--CCeEEEee
Confidence 87 89887763
No 25
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.84 E-value=1.4e-19 Score=135.45 Aligned_cols=108 Identities=20% Similarity=0.328 Sum_probs=94.1
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-CCceEEEcccCccCC-CC-CEE
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQSVP-NG-DAI 83 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~~~~-~~-D~i 83 (184)
....++..++ ..+..+|||||||+|.++..+++.+|..+++++|+ +.|++.++++ +++.++.+|+.+..+ .. |+|
T Consensus 19 ~~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 97 (258)
T PRK01683 19 PARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI 97 (258)
T ss_pred HHHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence 5677888887 78889999999999999999999998899999999 8999988776 789999999876322 33 999
Q ss_pred EechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 84 LIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 84 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+++.++||+++.. .+++++.++|||||.+++..
T Consensus 98 ~~~~~l~~~~d~~--~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 98 FANASLQWLPDHL--ELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred EEccChhhCCCHH--HHHHHHHHhcCCCcEEEEEC
Confidence 9999999998654 78999999999999999863
No 26
>PRK08317 hypothetical protein; Provisional
Probab=99.84 E-value=3e-19 Score=131.91 Aligned_cols=162 Identities=20% Similarity=0.289 Sum_probs=117.9
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-cC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-SV 77 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~~ 77 (184)
....+.++..+. +.+..+|||+|||+|.++..+++.+ |..+++++|. +.+++.++++ +++.+...|+.+ ++
T Consensus 5 ~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~ 83 (241)
T PRK08317 5 RRYRARTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPF 83 (241)
T ss_pred HHHHHHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCC
Confidence 445566777777 8889999999999999999999987 7789999999 8888777653 578999999876 55
Q ss_pred CCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHH
Q 030025 78 PNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHE 155 (184)
Q Consensus 78 ~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
+.. |+|++..+++|++++. .+++++.++|+|||.+++.++............ .................++..+
T Consensus 84 ~~~~~D~v~~~~~~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 159 (241)
T PRK08317 84 PDGSFDAVRSDRVLQHLEDPA--RALAEIARVLRPGGRVVVLDTDWDTLVWHSGDR--ALMRKILNFWSDHFADPWLGRR 159 (241)
T ss_pred CCCCceEEEEechhhccCCHH--HHHHHHHHHhcCCcEEEEEecCCCceeecCCCh--HHHHHHHHHHHhcCCCCcHHHH
Confidence 433 9999999999998764 789999999999999999886532211110000 0111111111111223456788
Q ss_pred HHHHHHHcCCceeEEEe
Q 030025 156 FTTLATEAGFSGIRFVC 172 (184)
Q Consensus 156 ~~~~l~~aGf~~i~~~~ 172 (184)
+.++++++||+.+++..
T Consensus 160 ~~~~l~~aGf~~~~~~~ 176 (241)
T PRK08317 160 LPGLFREAGLTDIEVEP 176 (241)
T ss_pred HHHHHHHcCCCceeEEE
Confidence 99999999999876643
No 27
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.84 E-value=7.7e-20 Score=131.73 Aligned_cols=157 Identities=20% Similarity=0.239 Sum_probs=118.8
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCC------CeEEEeec-hhHhhhCCCC---------CCceEEE
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPH------IKGINFDL-PHVIQHSPEY---------PGVKHVG 70 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~------~~~~~~D~-~~~~~~a~~~---------~~i~~~~ 70 (184)
.+-+.+..++. ..+..++||++||||.++..+++..+. .+++++|+ ++|+..++++ .++.++.
T Consensus 87 lWKd~~v~~L~-p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~ 165 (296)
T KOG1540|consen 87 LWKDMFVSKLG-PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVE 165 (296)
T ss_pred HHHHHhhhccC-CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEe
Confidence 34556667776 666799999999999999999998766 79999999 9999877654 3489999
Q ss_pred cccCc-cCCCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhh--H-h---
Q 030025 71 GDMFQ-SVPNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADV--L-V--- 141 (184)
Q Consensus 71 ~d~~~-~~~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~--~-~--- 141 (184)
+|+++ |+++. |..++.+.+.++++++ +.+++++|+|||||++.+.|....+.. ...+....+.+ . .
T Consensus 166 ~dAE~LpFdd~s~D~yTiafGIRN~th~~--k~l~EAYRVLKpGGrf~cLeFskv~~~---~l~~fy~~ysf~VlpvlG~ 240 (296)
T KOG1540|consen 166 GDAEDLPFDDDSFDAYTIAFGIRNVTHIQ--KALREAYRVLKPGGRFSCLEFSKVENE---PLKWFYDQYSFDVLPVLGE 240 (296)
T ss_pred CCcccCCCCCCcceeEEEecceecCCCHH--HHHHHHHHhcCCCcEEEEEEccccccH---HHHHHHHhhhhhhhchhhH
Confidence 99999 88876 9999999999999886 789999999999999999887654421 00010000000 0 0
Q ss_pred ----------hhhCCCccccCHHHHHHHHHHcCCceeE
Q 030025 142 ----------MTQYPGGKERTKHEFTTLATEAGFSGIR 169 (184)
Q Consensus 142 ----------~~~~~~~~~~~~~~~~~~l~~aGf~~i~ 169 (184)
.....=.++.+.+++.++.++|||+...
T Consensus 241 ~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 241 IIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 0000012345889999999999999887
No 28
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.83 E-value=8.3e-20 Score=136.45 Aligned_cols=158 Identities=15% Similarity=0.152 Sum_probs=109.3
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc--cCC-
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ--SVP- 78 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~--~~~- 78 (184)
..+++.++ ++..+|||+|||+|.++..+++. ..+++++|+ +.|++.|+++ ++++++++|+.+ +.+
T Consensus 35 ~~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~ 110 (255)
T PRK11036 35 DRLLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLE 110 (255)
T ss_pred HHHHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcC
Confidence 35666655 45689999999999999999987 468999999 8999888763 468899999876 233
Q ss_pred CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCC-ccccchhh-hhhHh--hhhCCCccccCH
Q 030025 79 NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENG-THSKINSL-ADVLV--MTQYPGGKERTK 153 (184)
Q Consensus 79 ~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~-~~~~~~~~-~~~~~--~~~~~~~~~~~~ 153 (184)
.. |+|++..++||++++. .+++++.++|||||++++............ ........ ..... ..........++
T Consensus 111 ~~fD~V~~~~vl~~~~~~~--~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 188 (255)
T PRK11036 111 TPVDLILFHAVLEWVADPK--SVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDP 188 (255)
T ss_pred CCCCEEEehhHHHhhCCHH--HHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCH
Confidence 33 9999999999998765 789999999999999998765432110000 00000000 00000 000001234689
Q ss_pred HHHHHHHHHcCCceeEEEee
Q 030025 154 HEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 154 ~~~~~~l~~aGf~~i~~~~~ 173 (184)
+++.++++++||++++..-.
T Consensus 189 ~~l~~~l~~aGf~~~~~~gi 208 (255)
T PRK11036 189 EQVYQWLEEAGWQIMGKTGV 208 (255)
T ss_pred HHHHHHHHHCCCeEeeeeeE
Confidence 99999999999998866543
No 29
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.82 E-value=7.7e-19 Score=128.52 Aligned_cols=169 Identities=15% Similarity=0.217 Sum_probs=122.5
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCC-CeEEEeec-hhHhhhCCCC----CCceEEEcccCc-cCCC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPH-IKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQ-SVPN 79 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~-~~~~ 79 (184)
.....+++.+. ..+..+|||+|||+|..+..+++..+. .+++++|. +.+++.++++ .++.+..+|+.+ +.+.
T Consensus 26 ~~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (223)
T TIGR01934 26 LWRRRAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFED 104 (223)
T ss_pred HHHHHHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCC
Confidence 34556666666 667899999999999999999999876 79999999 8888777653 468999999987 4443
Q ss_pred -C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhh--------hh--CC-
Q 030025 80 -G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVM--------TQ--YP- 146 (184)
Q Consensus 80 -~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--~~- 146 (184)
. |+|++..++|+.++.. .+++++.+.|+|||++++.+...+.... . ......... .. ..
T Consensus 105 ~~~D~i~~~~~~~~~~~~~--~~l~~~~~~L~~gG~l~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~ 176 (223)
T TIGR01934 105 NSFDAVTIAFGLRNVTDIQ--KALREMYRVLKPGGRLVILEFSKPANAL--L----KKFYKFYLKNVLPSIGGLISKNAE 176 (223)
T ss_pred CcEEEEEEeeeeCCcccHH--HHHHHHHHHcCCCcEEEEEEecCCCchh--h----HHHHHHHHHHhhhhhhhhhcCCch
Confidence 3 9999999999987654 7899999999999999998875443210 0 000000000 00 00
Q ss_pred --------CccccCHHHHHHHHHHcCCceeEEEeecCc-eEEEEEeC
Q 030025 147 --------GGKERTKHEFTTLATEAGFSGIRFVCFFHN-LWVMEFYK 184 (184)
Q Consensus 147 --------~~~~~~~~~~~~~l~~aGf~~i~~~~~~~~-~~~~~~~~ 184 (184)
.....+.++|.++|+++||+.+++...... ..++.++|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 177 AYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 012347899999999999999998887655 34555554
No 30
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.82 E-value=5.3e-19 Score=133.32 Aligned_cols=145 Identities=18% Similarity=0.267 Sum_probs=109.4
Q ss_pred CCCCCeEEEecCCcChHHHHHHhh-CCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cCCCC--CEEEech
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSK-YPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SVPNG--DAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~~~~--D~i~~~~ 87 (184)
+++..+|||+|||+|..+..+++. .+..+++++|. +.+++.|+++ ++++++.+|+.+ ++++. |+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 567889999999999988877776 45568999999 8999988763 578999999987 65543 9999999
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCce
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSG 167 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 167 (184)
++|++++.. .++++++++|||||++++.+........ .. .......+. ......++..++.++++++||..
T Consensus 155 v~~~~~d~~--~~l~~~~r~LkpGG~l~i~~~~~~~~~~----~~--~~~~~~~~~-~~~~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 155 VINLSPDKE--RVFKEAFRVLKPGGRFAISDVVLRGELP----EE--IRNDAELYA-GCVAGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred cccCCCCHH--HHHHHHHHHcCCCcEEEEEEeeccCCCC----HH--HHHhHHHHh-ccccCCCCHHHHHHHHHHCCCCc
Confidence 999987654 7899999999999999999876533210 00 111111111 11234568899999999999999
Q ss_pred eEEEe
Q 030025 168 IRFVC 172 (184)
Q Consensus 168 i~~~~ 172 (184)
+++..
T Consensus 226 v~i~~ 230 (272)
T PRK11873 226 ITIQP 230 (272)
T ss_pred eEEEe
Confidence 87644
No 31
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.82 E-value=5.5e-20 Score=120.69 Aligned_cols=98 Identities=18% Similarity=0.339 Sum_probs=83.1
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEccc-Cc-cCCC-CCEEEech-h
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDM-FQ-SVPN-GDAILIKW-I 88 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~-~~-~~~~-~D~i~~~~-~ 88 (184)
|+.+|||||||+|.++..++++++..+++++|. +.+++.++++ ++++++++|+ .. .... .|+|++.. +
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 468999999999999999999889999999999 8999888664 7899999999 33 3333 49999998 6
Q ss_pred hhcCC-hHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 89 LHDWS-DEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 89 l~~~~-~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
++++. .++..++++++++.|+|||++++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 66543 3566789999999999999999975
No 32
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.81 E-value=1.2e-18 Score=128.71 Aligned_cols=151 Identities=16% Similarity=0.214 Sum_probs=112.9
Q ss_pred HHhHHHHHHHhcCC--CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--CCceEEEcccCc-cCCC
Q 030025 6 TLVLQKILEAYKGF--EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--PGVKHVGGDMFQ-SVPN 79 (184)
Q Consensus 6 ~~~~~~l~~~~~~~--~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--~~i~~~~~d~~~-~~~~ 79 (184)
..+...+++.+... .+..+|||+|||+|.++..+++..+..+++++|. +.++..+++. +++.++.+|+.+ +++.
T Consensus 17 ~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 96 (240)
T TIGR02072 17 REMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLED 96 (240)
T ss_pred HHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCC
Confidence 34555666665521 3457999999999999999999999899999999 8888777654 578999999987 5444
Q ss_pred C--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHH
Q 030025 80 G--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFT 157 (184)
Q Consensus 80 ~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
. |+|++..++||..+.. .++++++++|+|||.+++.++..... .............+.+..+|.
T Consensus 97 ~~fD~vi~~~~l~~~~~~~--~~l~~~~~~L~~~G~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~ 162 (240)
T TIGR02072 97 SSFDLIVSNLALQWCDDLS--QALSELARVLKPGGLLAFSTFGPGTL------------HELRQSFGQHGLRYLSLDELK 162 (240)
T ss_pred CceeEEEEhhhhhhccCHH--HHHHHHHHHcCCCcEEEEEeCCccCH------------HHHHHHHHHhccCCCCHHHHH
Confidence 3 9999999999987654 78999999999999999987544321 011100010134456889999
Q ss_pred HHHHHcCCceeEEE
Q 030025 158 TLATEAGFSGIRFV 171 (184)
Q Consensus 158 ~~l~~aGf~~i~~~ 171 (184)
++++++ |+.+.+.
T Consensus 163 ~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 163 ALLKNS-FELLTLE 175 (240)
T ss_pred HHHHHh-cCCcEEE
Confidence 999998 8877654
No 33
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.81 E-value=1.9e-20 Score=129.48 Aligned_cols=99 Identities=24% Similarity=0.429 Sum_probs=86.6
Q ss_pred CCCCeEEEecCCcChHHHHHHh-hCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-c--CCCC-CEEEech
Q 030025 20 EHIKQLVDVGGSLGNTLKAITS-KYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-S--VPNG-DAILIKW 87 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~-~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~--~~~~-D~i~~~~ 87 (184)
.+..+|||+|||+|.++..+++ .++..+++++|+ +.|++.|++. ++++|.++|+.+ + ++.. |+|++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 4578999999999999999994 578899999999 9999998773 689999999998 4 3333 9999999
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
++||+++++ .+++++.+.|+|||.+++.+..
T Consensus 82 ~l~~~~~~~--~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFPDPE--KVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTSHHH--HHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhccCHH--HHHHHHHHHcCCCcEEEEEECC
Confidence 999998775 7899999999999999999987
No 34
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.80 E-value=2.3e-18 Score=123.66 Aligned_cols=142 Identities=13% Similarity=0.108 Sum_probs=105.4
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---C--CceEEEcccCc-cCCCC-
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---P--GVKHVGGDMFQ-SVPNG- 80 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~--~i~~~~~d~~~-~~~~~- 80 (184)
...+++.+. ..+..+|||+|||+|..+..++++ ..+++++|. +.|++.+++. . ++.+...|+.. +++..
T Consensus 19 ~~~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 95 (195)
T TIGR00477 19 HSAVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDY 95 (195)
T ss_pred hHHHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCC
Confidence 456777777 566789999999999999999986 468999999 8888876543 2 36677777765 44444
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHH
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLA 160 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (184)
|+|++..++||++.++...+++++++.|+|||++++.+.......... .+....++.+++.++|
T Consensus 96 D~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~----------------~~~~~~~~~~el~~~f 159 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCH----------------MPFSFTFKEDELRQYY 159 (195)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCC----------------CCcCccCCHHHHHHHh
Confidence 999999999999877777999999999999999777654332210000 0012245899999998
Q ss_pred HHcCCceeEEE
Q 030025 161 TEAGFSGIRFV 171 (184)
Q Consensus 161 ~~aGf~~i~~~ 171 (184)
+ +|+++...
T Consensus 160 ~--~~~~~~~~ 168 (195)
T TIGR00477 160 A--DWELLKYN 168 (195)
T ss_pred C--CCeEEEee
Confidence 7 58877665
No 35
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.80 E-value=3.6e-18 Score=127.37 Aligned_cols=152 Identities=12% Similarity=0.126 Sum_probs=112.4
Q ss_pred ccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-CCceEEEcccCc-cCCCC
Q 030025 4 HTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQ-SVPNG 80 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~-~~~~~ 80 (184)
.+...++.+++.++ ..+..+|||+|||+|.++..+++. ..+++++|+ +.|++.++++ +...++.+|+.+ +++..
T Consensus 26 ~q~~~a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~ 102 (251)
T PRK10258 26 LQRQSADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATA 102 (251)
T ss_pred HHHHHHHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCC
Confidence 34556777888887 556789999999999999988775 479999999 9999988876 456889999987 66543
Q ss_pred --CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHH
Q 030025 81 --DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTT 158 (184)
Q Consensus 81 --D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
|+|+++.++|+.++.. .+++++.++|+|||.++++.+...... +....+.... .......+.+.+++.+
T Consensus 103 ~fD~V~s~~~l~~~~d~~--~~l~~~~~~Lk~gG~l~~~~~~~~~~~-----el~~~~~~~~--~~~~~~~~~~~~~l~~ 173 (251)
T PRK10258 103 TFDLAWSNLAVQWCGNLS--TALRELYRVVRPGGVVAFTTLVQGSLP-----ELHQAWQAVD--ERPHANRFLPPDAIEQ 173 (251)
T ss_pred cEEEEEECchhhhcCCHH--HHHHHHHHHcCCCeEEEEEeCCCCchH-----HHHHHHHHhc--cCCccccCCCHHHHHH
Confidence 9999999999987764 789999999999999999876543211 0000000000 0011234568999999
Q ss_pred HHHHcCCce
Q 030025 159 LATEAGFSG 167 (184)
Q Consensus 159 ~l~~aGf~~ 167 (184)
+++..|++.
T Consensus 174 ~l~~~~~~~ 182 (251)
T PRK10258 174 ALNGWRYQH 182 (251)
T ss_pred HHHhCCcee
Confidence 999888764
No 36
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.78 E-value=6e-19 Score=127.80 Aligned_cols=155 Identities=13% Similarity=0.075 Sum_probs=111.6
Q ss_pred HHHHHHHhcCCCC------CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------C-----CceEE
Q 030025 9 LQKILEAYKGFEH------IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------P-----GVKHV 69 (184)
Q Consensus 9 ~~~l~~~~~~~~~------~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~-----~i~~~ 69 (184)
.+.+++..+...+ +++|||+|||+|-++..|++.. ..++|+|. .+|++.|+++ + ++++.
T Consensus 71 ~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~ 148 (282)
T KOG1270|consen 71 RDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYE 148 (282)
T ss_pred HHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehh
Confidence 4455555532233 3789999999999999999984 78999999 9999999875 1 36677
Q ss_pred EcccCccCCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhC----
Q 030025 70 GGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQY---- 145 (184)
Q Consensus 70 ~~d~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 145 (184)
+.|.+..-+.+|+|+|..+++|+.+++ ++++.+.+.|||||.|++++....-.... .....+.+.+...
T Consensus 149 ~~~~E~~~~~fDaVvcsevleHV~dp~--~~l~~l~~~lkP~G~lfittinrt~lS~~-----~~i~~~E~vl~ivp~Gt 221 (282)
T KOG1270|consen 149 DTDVEGLTGKFDAVVCSEVLEHVKDPQ--EFLNCLSALLKPNGRLFITTINRTILSFA-----GTIFLAEIVLRIVPKGT 221 (282)
T ss_pred hcchhhcccccceeeeHHHHHHHhCHH--HHHHHHHHHhCCCCceEeeehhhhHHHhh-----ccccHHHHHHHhcCCCC
Confidence 777776445579999999999998774 89999999999999999998765432110 0011111111111
Q ss_pred -CCccccCHHHHHHHHHHcCCceeEEEe
Q 030025 146 -PGGKERTKHEFTTLATEAGFSGIRFVC 172 (184)
Q Consensus 146 -~~~~~~~~~~~~~~l~~aGf~~i~~~~ 172 (184)
....+.+++++..+++.+|+....+.-
T Consensus 222 h~~ekfi~p~e~~~~l~~~~~~v~~v~G 249 (282)
T KOG1270|consen 222 HTWEKFINPEELTSILNANGAQVNDVVG 249 (282)
T ss_pred cCHHHcCCHHHHHHHHHhcCcchhhhhc
Confidence 112356999999999999998776543
No 37
>PRK06202 hypothetical protein; Provisional
Probab=99.78 E-value=1.5e-17 Score=122.73 Aligned_cols=146 Identities=17% Similarity=0.178 Sum_probs=102.5
Q ss_pred CCCCCeEEEecCCcChHHHHHHhh----CCCCeEEEeec-hhHhhhCCCC---CCceEEEcccCc-cCCC-C-CEEEech
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSK----YPHIKGINFDL-PHVIQHSPEY---PGVKHVGGDMFQ-SVPN-G-DAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~----~~~~~~~~~D~-~~~~~~a~~~---~~i~~~~~d~~~-~~~~-~-D~i~~~~ 87 (184)
..+..+|||+|||+|.++..+++. .++.+++++|+ +.|++.|++. +++.+...+... +.++ . |+|+++.
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence 456789999999999999888764 35679999999 9999988775 567777766544 3333 3 9999999
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhh----hCC-----CccccCHHHHHH
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMT----QYP-----GGKERTKHEFTT 158 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~ 158 (184)
++||+++++...++++++++++ |.+++.+...+... ............ ... -.+.++.+++.+
T Consensus 138 ~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~------~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ 209 (232)
T PRK06202 138 FLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLA------YALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAA 209 (232)
T ss_pred eeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHH------HHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHH
Confidence 9999998877789999999998 66777665543210 000000000000 000 124679999999
Q ss_pred HHHHcCCceeEEEee
Q 030025 159 LATEAGFSGIRFVCF 173 (184)
Q Consensus 159 ~l~~aGf~~i~~~~~ 173 (184)
++++ ||++...+..
T Consensus 210 ll~~-Gf~~~~~~~~ 223 (232)
T PRK06202 210 LAPQ-GWRVERQWPF 223 (232)
T ss_pred HhhC-CCeEEeccce
Confidence 9999 9997765543
No 38
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.78 E-value=4.5e-19 Score=112.64 Aligned_cols=88 Identities=19% Similarity=0.410 Sum_probs=76.3
Q ss_pred EEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---CCceEEEcccCc-cCCCC--CEEEechhhhcCChHHHH
Q 030025 26 VDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---PGVKHVGGDMFQ-SVPNG--DAILIKWILHDWSDEHCL 98 (184)
Q Consensus 26 lDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~i~~~~~d~~~-~~~~~--D~i~~~~~l~~~~~~~~~ 98 (184)
||+|||+|..+..++++ +..+++++|. +.+++.+++. .++.++..|+.+ ++++. |+|++.+++||+++. .
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~--~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDP--E 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHH--H
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCH--H
Confidence 89999999999999998 7889999999 8888888774 456799999998 77754 999999999999544 5
Q ss_pred HHHHHHHhhCCCCcEEEE
Q 030025 99 KLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 99 ~~l~~~~~~L~pgG~l~i 116 (184)
.++++++|+|||||++++
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 899999999999999986
No 39
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.78 E-value=1.1e-17 Score=131.19 Aligned_cols=155 Identities=11% Similarity=0.097 Sum_probs=114.5
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---CCceEEEcccCccCCCCCEE
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---PGVKHVGGDMFQSVPNGDAI 83 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~i~~~~~d~~~~~~~~D~i 83 (184)
-...+++.+. +++..+|||||||+|.++..+++.+ +++++++|+ +.+++.++++ .++++...|+.+..+..|.|
T Consensus 155 k~~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~I 232 (383)
T PRK11705 155 KLDLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRI 232 (383)
T ss_pred HHHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEE
Confidence 3556778887 8889999999999999999998876 579999999 8899888764 24777777776532233999
Q ss_pred EechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHc
Q 030025 84 LIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEA 163 (184)
Q Consensus 84 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 163 (184)
++..+++|++.+....+++++.++|||||++++.+...+...... .. +.. ....+++...+..++.+.++ .
T Consensus 233 vs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~-~~----~i~---~yifp~g~lps~~~i~~~~~-~ 303 (383)
T PRK11705 233 VSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNV-DP----WIN---KYIFPNGCLPSVRQIAQASE-G 303 (383)
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCC-CC----Cce---eeecCCCcCCCHHHHHHHHH-C
Confidence 999999999877667899999999999999999876544321111 00 111 01134556668888888766 5
Q ss_pred CCceeEEEee
Q 030025 164 GFSGIRFVCF 173 (184)
Q Consensus 164 Gf~~i~~~~~ 173 (184)
||.+.++...
T Consensus 304 ~~~v~d~~~~ 313 (383)
T PRK11705 304 LFVMEDWHNF 313 (383)
T ss_pred CcEEEEEecC
Confidence 8887776544
No 40
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.78 E-value=1.1e-17 Score=119.43 Aligned_cols=131 Identities=18% Similarity=0.277 Sum_probs=102.0
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCccCCC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSVPN 79 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~~~ 79 (184)
.+...+++.+. ..+..+|||+|||+|.++..+++++|+.+++++|. +.+++.++++ ++++++.+|.....+.
T Consensus 18 ~~r~~~~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~ 96 (187)
T PRK08287 18 EVRALALSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPG 96 (187)
T ss_pred HHHHHHHHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCc
Confidence 34445566776 77889999999999999999999999899999999 8888887653 4688888887654444
Q ss_pred C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHH
Q 030025 80 G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTT 158 (184)
Q Consensus 80 ~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
. |+|++....+++ ..+++.+.+.|+|||++++..... .+.+++.+
T Consensus 97 ~~D~v~~~~~~~~~-----~~~l~~~~~~Lk~gG~lv~~~~~~-----------------------------~~~~~~~~ 142 (187)
T PRK08287 97 KADAIFIGGSGGNL-----TAIIDWSLAHLHPGGRLVLTFILL-----------------------------ENLHSALA 142 (187)
T ss_pred CCCEEEECCCccCH-----HHHHHHHHHhcCCCeEEEEEEecH-----------------------------hhHHHHHH
Confidence 4 999997765543 357999999999999998854321 13567788
Q ss_pred HHHHcCCceeEEEe
Q 030025 159 LATEAGFSGIRFVC 172 (184)
Q Consensus 159 ~l~~aGf~~i~~~~ 172 (184)
++++.||+.++++.
T Consensus 143 ~l~~~g~~~~~~~~ 156 (187)
T PRK08287 143 HLEKCGVSELDCVQ 156 (187)
T ss_pred HHHHCCCCcceEEE
Confidence 99999998776543
No 41
>PRK05785 hypothetical protein; Provisional
Probab=99.77 E-value=1.6e-17 Score=121.76 Aligned_cols=163 Identities=9% Similarity=0.032 Sum_probs=110.0
Q ss_pred hHHHHHHHhcC-CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-cCCCC--CE
Q 030025 8 VLQKILEAYKG-FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-SVPNG--DA 82 (184)
Q Consensus 8 ~~~~l~~~~~~-~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~~~--D~ 82 (184)
+.+.+++.+.. .++..+|||||||||..+..+++.+ ..+++++|. ++|++.|++. ..++++|+.+ ++++. |+
T Consensus 37 wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~ 113 (226)
T PRK05785 37 WRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDV 113 (226)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEE
Confidence 33444444421 1346899999999999999999887 579999999 9999998865 3467888887 77654 99
Q ss_pred EEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHh--------hhhCCC-------
Q 030025 83 ILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLV--------MTQYPG------- 147 (184)
Q Consensus 83 i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~------- 147 (184)
|++.+++||+++++ .++++++|+|||. +++.+...++... .......+. ......
T Consensus 114 v~~~~~l~~~~d~~--~~l~e~~RvLkp~--~~ile~~~p~~~~------~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl 183 (226)
T PRK05785 114 VMSSFALHASDNIE--KVIAEFTRVSRKQ--VGFIAMGKPDNVI------KRKYLSFYLRYIMPYIACLAGAKCRDYKYI 183 (226)
T ss_pred EEecChhhccCCHH--HHHHHHHHHhcCc--eEEEEeCCCCcHH------HHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 99999999998765 7899999999994 4344544433210 001111110 000000
Q ss_pred ----ccccCHHHHHHHHHHcCCceeEEEeec-CceEEEEEeC
Q 030025 148 ----GKERTKHEFTTLATEAGFSGIRFVCFF-HNLWVMEFYK 184 (184)
Q Consensus 148 ----~~~~~~~~~~~~l~~aGf~~i~~~~~~-~~~~~~~~~~ 184 (184)
....+.+++.++++++| ..++.+... +...+..++|
T Consensus 184 ~~si~~f~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 184 YYIYERLPTNSFHREIFEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHHHCCCHHHHHHHHHHHh-CceEEEEccccEEEEEEEee
Confidence 12348899999999984 667777765 4444555544
No 42
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.77 E-value=1.3e-17 Score=121.90 Aligned_cols=159 Identities=11% Similarity=0.061 Sum_probs=110.8
Q ss_pred hHHHHHHHhcC-CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCC
Q 030025 8 VLQKILEAYKG-FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVP 78 (184)
Q Consensus 8 ~~~~l~~~~~~-~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~ 78 (184)
+...+++.+.. ..+..+|||+|||+|.++..+++. ..+++++|+ +.|++.|+++ .++.+...|+.+...
T Consensus 41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 118 (219)
T TIGR02021 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCG 118 (219)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCC
Confidence 44556666652 456789999999999999999886 458999999 8999888764 378999999877333
Q ss_pred CCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhh-hhCCCccccCHHHHH
Q 030025 79 NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVM-TQYPGGKERTKHEFT 157 (184)
Q Consensus 79 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 157 (184)
..|+|++..+++|++.++...+++++.+++++++.+.+... .. .............. ........++.+++.
T Consensus 119 ~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
T TIGR02021 119 EFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPK---TA----WLAFLKMIGELFPGSSRATSAYLHPMTDLE 191 (219)
T ss_pred CcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCC---ch----HHHHHHHHHhhCcCcccccceEEecHHHHH
Confidence 34999999999999877777899999999987765554211 10 00000000000000 001122456899999
Q ss_pred HHHHHcCCceeEEEeecC
Q 030025 158 TLATEAGFSGIRFVCFFH 175 (184)
Q Consensus 158 ~~l~~aGf~~i~~~~~~~ 175 (184)
++++++||+++.......
T Consensus 192 ~~l~~~Gf~v~~~~~~~~ 209 (219)
T TIGR02021 192 RALGELGWKIVREGLVST 209 (219)
T ss_pred HHHHHcCceeeeeecccc
Confidence 999999999998876543
No 43
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.76 E-value=5.7e-19 Score=126.93 Aligned_cols=143 Identities=15% Similarity=0.108 Sum_probs=105.6
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---CC--ceEEEcccCc-cCC--CCCEEEechhhhc
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---PG--VKHVGGDMFQ-SVP--NGDAILIKWILHD 91 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~--i~~~~~d~~~-~~~--~~D~i~~~~~l~~ 91 (184)
+..+|||||||-|.++..|++.. ..++++|. +.+++.|+.+ .. +++.+...++ ... ..|+|+|..+++|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 57899999999999999999984 89999999 9999999865 33 4577777766 222 3399999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhh-HhhhhCCC-----ccccCHHHHHHHHHHcCC
Q 030025 92 WSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADV-LVMTQYPG-----GKERTKHEFTTLATEAGF 165 (184)
Q Consensus 92 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~l~~aGf 165 (184)
+++++ .+++.+.+++||||.++++++...-. .+....... +.+...+. .++.-++++..++.++|+
T Consensus 137 v~dp~--~~~~~c~~lvkP~G~lf~STinrt~k------a~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~ 208 (243)
T COG2227 137 VPDPE--SFLRACAKLVKPGGILFLSTINRTLK------AYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANL 208 (243)
T ss_pred cCCHH--HHHHHHHHHcCCCcEEEEeccccCHH------HHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCc
Confidence 99987 69999999999999999998874321 011111111 11111111 234578999999999999
Q ss_pred ceeEEEee
Q 030025 166 SGIRFVCF 173 (184)
Q Consensus 166 ~~i~~~~~ 173 (184)
..+.....
T Consensus 209 ~~~~~~g~ 216 (243)
T COG2227 209 KIIDRKGL 216 (243)
T ss_pred eEEeecce
Confidence 98876543
No 44
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.76 E-value=1.4e-17 Score=134.59 Aligned_cols=147 Identities=20% Similarity=0.243 Sum_probs=113.6
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEcccCc---cC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQ---SV 77 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~---~~ 77 (184)
......+++.++ ..+..+|||||||+|.++..+++.. .+++++|. +.|++.+++. +++.++.+|+.+ ++
T Consensus 23 ~~~~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~ 99 (475)
T PLN02336 23 KEERPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNI 99 (475)
T ss_pred chhhhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCC
Confidence 344567777777 6667899999999999999999874 48899999 8888776532 578999999964 44
Q ss_pred CCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHH
Q 030025 78 PNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHE 155 (184)
Q Consensus 78 ~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
+.. |+|++..++||+++++...++++++++|||||++++.|........... . .....+++...
T Consensus 100 ~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~------~--------~~~~~~~~~~~ 165 (475)
T PLN02336 100 SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKR------K--------NNPTHYREPRF 165 (475)
T ss_pred CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccc------c--------CCCCeecChHH
Confidence 433 9999999999999887789999999999999999998875433211000 0 11233457889
Q ss_pred HHHHHHHcCCceeE
Q 030025 156 FTTLATEAGFSGIR 169 (184)
Q Consensus 156 ~~~~l~~aGf~~i~ 169 (184)
|.++|.++||....
T Consensus 166 ~~~~f~~~~~~~~~ 179 (475)
T PLN02336 166 YTKVFKECHTRDED 179 (475)
T ss_pred HHHHHHHheeccCC
Confidence 99999999988763
No 45
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.76 E-value=1.8e-17 Score=119.62 Aligned_cols=104 Identities=15% Similarity=0.353 Sum_probs=90.2
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-CCceEEEcccCccCCCC--CEEEechhhhcCCh
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQSVPNG--DAILIKWILHDWSD 94 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~~~~~~--D~i~~~~~l~~~~~ 94 (184)
.++..+|||||||+|..+..+++..+..+++++|+ +.|++.|+++ +++.+..+|+.++++.. |+|++..+++|+++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 45678999999999999999999888899999999 9999999874 78899999988765543 99999999999987
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEeeecCCC
Q 030025 95 EHCLKLLKNCHKSIPEGGKVIVVESVLPEL 124 (184)
Q Consensus 95 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 124 (184)
++..++++++.+++ ++.+++.+...++.
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e~~~~~~ 148 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAEYYNPSP 148 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEEeeCCCc
Confidence 77789999999997 67899988876553
No 46
>PRK04266 fibrillarin; Provisional
Probab=99.76 E-value=1e-16 Score=117.22 Aligned_cols=135 Identities=13% Similarity=0.133 Sum_probs=95.9
Q ss_pred HhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhh----hCCCCCCceEEEcccCcc-----CCCC-CEE
Q 030025 15 AYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQ----HSPEYPGVKHVGGDMFQS-----VPNG-DAI 83 (184)
Q Consensus 15 ~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~----~a~~~~~i~~~~~d~~~~-----~~~~-D~i 83 (184)
.++ +.+..+|||+|||+|.++..+++..+..+++++|. +.|++ .+++.+|+.++.+|...+ ++.. |+|
T Consensus 67 ~l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i 145 (226)
T PRK04266 67 NFP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVI 145 (226)
T ss_pred hCC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEE
Confidence 466 78899999999999999999999876679999999 76666 445557899999998752 2233 888
Q ss_pred EechhhhcCChH-HHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHH
Q 030025 84 LIKWILHDWSDE-HCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATE 162 (184)
Q Consensus 84 ~~~~~l~~~~~~-~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (184)
++. ++++ ....+++++++.|||||+++++-+..+-+.. . ... +..++..+++++
T Consensus 146 ~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~------------------~-~~~-~~~~~~~~~l~~ 200 (226)
T PRK04266 146 YQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVT------------------K-DPK-EIFKEEIRKLEE 200 (226)
T ss_pred EEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCc------------------C-CHH-HHHHHHHHHHHH
Confidence 753 3333 2235789999999999999995222110000 0 000 112445699999
Q ss_pred cCCceeEEEeecC
Q 030025 163 AGFSGIRFVCFFH 175 (184)
Q Consensus 163 aGf~~i~~~~~~~ 175 (184)
+||+.++.....+
T Consensus 201 aGF~~i~~~~l~p 213 (226)
T PRK04266 201 GGFEILEVVDLEP 213 (226)
T ss_pred cCCeEEEEEcCCC
Confidence 9999999887653
No 47
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.75 E-value=6.8e-19 Score=113.11 Aligned_cols=87 Identities=23% Similarity=0.414 Sum_probs=59.3
Q ss_pred EEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CC---ceEEEcccCccCC--CCCEEEechhhhcCC
Q 030025 26 VDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PG---VKHVGGDMFQSVP--NGDAILIKWILHDWS 93 (184)
Q Consensus 26 lDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~---i~~~~~d~~~~~~--~~D~i~~~~~l~~~~ 93 (184)
||||||+|..+..+++.+|..+++++|+ +.|++.++++ .+ +.+...|..+..+ ..|+|++.+++||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999999 9999888876 22 2333333333222 339999999999995
Q ss_pred hHHHHHHHHHHHhhCCCCcEE
Q 030025 94 DEHCLKLLKNCHKSIPEGGKV 114 (184)
Q Consensus 94 ~~~~~~~l~~~~~~L~pgG~l 114 (184)
+. ..+++++++.|+|||+|
T Consensus 81 ~~--~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DI--EAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -H--HHHHHHHTTT-TSS-EE
T ss_pred hH--HHHHHHHHHHcCCCCCC
Confidence 44 48999999999999986
No 48
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.75 E-value=5.7e-17 Score=123.08 Aligned_cols=141 Identities=16% Similarity=0.155 Sum_probs=104.6
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-cCCCC-C
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-SVPNG-D 81 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~~~~~-D 81 (184)
+.++..+. ..+.++|||+|||+|..+..+++. +.+++++|. +.+++.+++. .++++...|+.. .++.. |
T Consensus 110 ~~~~~~~~-~~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD 186 (287)
T PRK12335 110 SEVLEAVQ-TVKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYD 186 (287)
T ss_pred HHHHHHhh-ccCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCcc
Confidence 34555555 445679999999999999999886 579999999 8888877553 367888888876 44444 9
Q ss_pred EEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHH
Q 030025 82 AILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLAT 161 (184)
Q Consensus 82 ~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (184)
+|++..++||+++++...+++++.+.|+|||++++...........+ .+....++.+++.++++
T Consensus 187 ~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~----------------~p~~~~~~~~el~~~~~ 250 (287)
T PRK12335 187 FILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP----------------MPFSFTFKEGELKDYYQ 250 (287)
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC----------------CCCCcccCHHHHHHHhC
Confidence 99999999999877778999999999999999877554332211000 01122457899999997
Q ss_pred HcCCceeEEE
Q 030025 162 EAGFSGIRFV 171 (184)
Q Consensus 162 ~aGf~~i~~~ 171 (184)
+|++++..
T Consensus 251 --~~~i~~~~ 258 (287)
T PRK12335 251 --DWEIVKYN 258 (287)
T ss_pred --CCEEEEEe
Confidence 48888764
No 49
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.74 E-value=1.1e-16 Score=113.55 Aligned_cols=141 Identities=18% Similarity=0.174 Sum_probs=105.4
Q ss_pred HHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCccCCCC-CEEE
Q 030025 12 ILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQSVPNG-DAIL 84 (184)
Q Consensus 12 l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~~~~~~-D~i~ 84 (184)
+.+.+. ..+..+|||+|||+|.++..+++..+ +++++|+ +.+++.++++ .+++++.+|..+..+.. |+|+
T Consensus 11 l~~~l~-~~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi 87 (179)
T TIGR00537 11 LEANLR-ELKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVIL 87 (179)
T ss_pred HHHHHH-hcCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEE
Confidence 344444 44567899999999999999999865 8999999 9998887764 35788889987633334 9999
Q ss_pred echhhhcCChHH-------------------HHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhC
Q 030025 85 IKWILHDWSDEH-------------------CLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQY 145 (184)
Q Consensus 85 ~~~~l~~~~~~~-------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (184)
++..+++.+++. ...+++++.++|+|||++++.+....
T Consensus 88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~----------------------- 144 (179)
T TIGR00537 88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN----------------------- 144 (179)
T ss_pred ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------------------
Confidence 998887765321 24689999999999999999764221
Q ss_pred CCccccCHHHHHHHHHHcCCceeEEEeecCceEEEEEeC
Q 030025 146 PGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 146 ~~~~~~~~~~~~~~l~~aGf~~i~~~~~~~~~~~~~~~~ 184 (184)
...++.+.+++.||+...+....-.+--+.++|
T Consensus 145 ------~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 145 ------GEPDTFDKLDERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred ------ChHHHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence 256778899999999887776654544444443
No 50
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.74 E-value=1.6e-16 Score=112.63 Aligned_cols=162 Identities=15% Similarity=0.134 Sum_probs=117.9
Q ss_pred CCCC-eEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhC----C--CCCCc-eEEEcccCc---cCC-------CC
Q 030025 20 EHIK-QLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHS----P--EYPGV-KHVGGDMFQ---SVP-------NG 80 (184)
Q Consensus 20 ~~~~-~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a----~--~~~~i-~~~~~d~~~---~~~-------~~ 80 (184)
+... +|||||||||..+..+++.+|+++..-.|. +..+..- . ..+|+ ..+..|+.+ +++ ..
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCC
Confidence 3444 599999999999999999999999988886 4332111 1 12333 345666665 222 13
Q ss_pred -CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHH
Q 030025 81 -DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTL 159 (184)
Q Consensus 81 -D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
|+|++.+++|..+......+|+.+.++|+|||.|++..+...+....... ...++.......+....++.+++.++
T Consensus 103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~S---N~~FD~sLr~rdp~~GiRD~e~v~~l 179 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSES---NAAFDASLRSRDPEWGIRDIEDVEAL 179 (204)
T ss_pred cceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcH---HHHHHHHHhcCCCCcCccCHHHHHHH
Confidence 99999999999999999999999999999999999999887665332221 12333333333345567899999999
Q ss_pred HHHcCCceeEEEeecCceEEEEEeC
Q 030025 160 ATEAGFSGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 160 l~~aGf~~i~~~~~~~~~~~~~~~~ 184 (184)
.+++||+.++.+..+.+--++.+.|
T Consensus 180 A~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 180 AAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred HHHCCCccCcccccCCCCeEEEEeC
Confidence 9999999999998885555555544
No 51
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.74 E-value=3.8e-17 Score=122.37 Aligned_cols=101 Identities=18% Similarity=0.271 Sum_probs=82.7
Q ss_pred CCCCCeEEEecCCcCh----HHHHHHhhCC-----CCeEEEeec-hhHhhhCCCC-------------------------
Q 030025 19 FEHIKQLVDVGGSLGN----TLKAITSKYP-----HIKGINFDL-PHVIQHSPEY------------------------- 63 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~----~~~~l~~~~~-----~~~~~~~D~-~~~~~~a~~~------------------------- 63 (184)
..+..+|+|+|||||. ++..+++..+ +.+++++|+ +.|++.|++.
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 4456799999999996 4445555543 579999999 9999988763
Q ss_pred --------CCceEEEcccCc-cCCC-C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 64 --------PGVKHVGGDMFQ-SVPN-G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 64 --------~~i~~~~~d~~~-~~~~-~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.++.|.+.|+.+ +.+. . |+|+|.++++|+++++..++++++++.|+|||+|++...
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 268999999988 4333 3 999999999999988878999999999999999999653
No 52
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.73 E-value=3.6e-18 Score=110.15 Aligned_cols=88 Identities=24% Similarity=0.452 Sum_probs=74.7
Q ss_pred EEEecCCcChHHHHHHhhC---CCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-cCCC--CCEEEe-chhhhc
Q 030025 25 LVDVGGSLGNTLKAITSKY---PHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-SVPN--GDAILI-KWILHD 91 (184)
Q Consensus 25 ilDiG~G~G~~~~~l~~~~---~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~~~~--~D~i~~-~~~l~~ 91 (184)
|||+|||+|..+..+++.+ |..+++++|+ +.|++.++++ .+++++++|+.+ +... .|+|++ ..+++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999986 5589999999 9999988764 589999999988 5433 399999 456999
Q ss_pred CChHHHHHHHHHHHhhCCCCc
Q 030025 92 WSDEHCLKLLKNCHKSIPEGG 112 (184)
Q Consensus 92 ~~~~~~~~~l~~~~~~L~pgG 112 (184)
+++++...+++++.++|+|||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999998
No 53
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.73 E-value=8e-17 Score=119.87 Aligned_cols=152 Identities=16% Similarity=0.171 Sum_probs=103.5
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhh---CCCC----CCceEEEcccCc-cCCCC
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQH---SPEY----PGVKHVGGDMFQ-SVPNG 80 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~---a~~~----~~i~~~~~d~~~-~~~~~ 80 (184)
+.+..+++ -=.+++|||||||.|+++..|+.+.+ ..++|+|. +..... +++. ..+.....-+++ +..+.
T Consensus 105 ~rl~p~l~-~L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~ 182 (315)
T PF08003_consen 105 DRLLPHLP-DLKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGA 182 (315)
T ss_pred HHHHhhhC-CcCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCC
Confidence 45666765 33678999999999999999999865 37999996 322211 1111 223333233333 33333
Q ss_pred -CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccc--cchhhhhhHhhhhCCCccccCHHHHH
Q 030025 81 -DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHS--KINSLADVLVMTQYPGGKERTKHEFT 157 (184)
Q Consensus 81 -D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
|+|+|.+|++|..+| ...|++++..|+|||.|++-+...+........+ +...+-+. ....|...+.
T Consensus 183 FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv--------~FiPs~~~L~ 252 (315)
T PF08003_consen 183 FDTVFSMGVLYHRRSP--LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNV--------WFIPSVAALK 252 (315)
T ss_pred cCEEEEeeehhccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCce--------EEeCCHHHHH
Confidence 999999999999877 4789999999999999999888776643221111 11111110 1124899999
Q ss_pred HHHHHcCCceeEEEee
Q 030025 158 TLATEAGFSGIRFVCF 173 (184)
Q Consensus 158 ~~l~~aGf~~i~~~~~ 173 (184)
.|++++||+.+++...
T Consensus 253 ~wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 253 NWLERAGFKDVRCVDV 268 (315)
T ss_pred HHHHHcCCceEEEecC
Confidence 9999999999998754
No 54
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.72 E-value=1e-16 Score=122.41 Aligned_cols=106 Identities=15% Similarity=0.272 Sum_probs=83.0
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC-----CC--ceEEEcccCc--cC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY-----PG--VKHVGGDMFQ--SV 77 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-----~~--i~~~~~d~~~--~~ 77 (184)
+..|++.++ +..+|||+|||+|..+..+++..+ ..+++++|+ +.|++.++++ ++ +.++++|+.+ ++
T Consensus 54 ~~~ia~~~~---~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~ 130 (301)
T TIGR03438 54 ADEIAAATG---AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLAL 130 (301)
T ss_pred HHHHHHhhC---CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhh
Confidence 444555443 557899999999999999999876 589999999 8898777553 44 5668999976 22
Q ss_pred CC-----C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 78 PN-----G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 78 ~~-----~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
+. . .++++.++++++++++...+|+++++.|+|||.+++.
T Consensus 131 ~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 131 PPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred hcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 21 1 3445567899999888899999999999999999973
No 55
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.72 E-value=3.2e-17 Score=117.43 Aligned_cols=145 Identities=21% Similarity=0.285 Sum_probs=107.1
Q ss_pred eEEEecCCcChHHHHHHhhCCC--CeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-----cCCCC--CEEEechh
Q 030025 24 QLVDVGGSLGNTLKAITSKYPH--IKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-----SVPNG--DAILIKWI 88 (184)
Q Consensus 24 ~ilDiG~G~G~~~~~l~~~~~~--~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-----~~~~~--D~i~~~~~ 88 (184)
+|||||||.|.+...+++..++ ..+.++|. |.+++..+++ .++.....|+.. +.+.+ |.|++.++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 8999999999999999999877 89999999 8999888775 356666677764 22333 99999999
Q ss_pred hhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCc--cccCHHHHHHHHHHcCCc
Q 030025 89 LHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGG--KERTKHEFTTLATEAGFS 166 (184)
Q Consensus 89 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~aGf~ 166 (184)
|..++++....++++++++|||||.|++-|...-+.....-... ...+........+. .+++.+++.++|++|||.
T Consensus 154 LSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~--~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~ 231 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKG--QCISENFYVRGDGTRAYFFTEEELDELFTKAGFE 231 (264)
T ss_pred EeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCC--ceeecceEEccCCceeeeccHHHHHHHHHhcccc
Confidence 99999998899999999999999999998865433210000000 01111111111223 356999999999999999
Q ss_pred eeEE
Q 030025 167 GIRF 170 (184)
Q Consensus 167 ~i~~ 170 (184)
.++.
T Consensus 232 ~~~~ 235 (264)
T KOG2361|consen 232 EVQL 235 (264)
T ss_pred hhcc
Confidence 8764
No 56
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.72 E-value=1.9e-16 Score=116.54 Aligned_cols=157 Identities=12% Similarity=0.123 Sum_probs=104.8
Q ss_pred HHHHHHHhcC--CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCC
Q 030025 9 LQKILEAYKG--FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVP 78 (184)
Q Consensus 9 ~~~l~~~~~~--~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~ 78 (184)
.+.+++.++. ..+..+|||||||+|.++..+++.. ..++++|. +.|++.|+++ .++.+..+|+....+
T Consensus 49 ~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 126 (230)
T PRK07580 49 RDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLG 126 (230)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccC
Confidence 3445555542 3567899999999999999999874 56999999 8898888764 368899998543322
Q ss_pred CCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHh-hhhCCCccccCHHHHH
Q 030025 79 NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLV-MTQYPGGKERTKHEFT 157 (184)
Q Consensus 79 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 157 (184)
..|+|++..++||+++++...+++++.+.+++++.+.+ ....+. ............ ..........+..+|.
T Consensus 127 ~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~-~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 199 (230)
T PRK07580 127 RFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF-APYTPL------LALLHWIGGLFPGPSRTTRIYPHREKGIR 199 (230)
T ss_pred CcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE-CCccHH------HHHHHHhccccCCccCCCCccccCHHHHH
Confidence 34999999999999988888999999998754443332 111000 000000000000 0001123356889999
Q ss_pred HHHHHcCCceeEEEeec
Q 030025 158 TLATEAGFSGIRFVCFF 174 (184)
Q Consensus 158 ~~l~~aGf~~i~~~~~~ 174 (184)
++++++||+..+.....
T Consensus 200 ~~l~~~Gf~~~~~~~~~ 216 (230)
T PRK07580 200 RALAAAGFKVVRTERIS 216 (230)
T ss_pred HHHHHCCCceEeeeecc
Confidence 99999999998877653
No 57
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.71 E-value=4.5e-17 Score=114.10 Aligned_cols=146 Identities=20% Similarity=0.198 Sum_probs=104.5
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCce-EEEcccCc-c-CCCC--CEEEech
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVK-HVGGDMFQ-S-VPNG--DAILIKW 87 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~-~~~~d~~~-~-~~~~--D~i~~~~ 87 (184)
.....|||||||||..-.. ....|.++++++|. +.|-+.+.+. .++. |+.++.++ + ++++ |+|++..
T Consensus 75 ~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred cCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE
Confidence 3456789999999988753 33347899999998 8888776553 5666 99999988 4 5554 9999999
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhH--hhhh-CCCccccCHHHHHHHHHHcC
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVL--VMTQ-YPGGKERTKHEFTTLATEAG 164 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~l~~aG 164 (184)
+++...++ .+.|+++.|+|+|||++++.|+........ ..+.+.. ..++ ...|-..+.+.+ +.|++|-
T Consensus 154 vLCSve~~--~k~L~e~~rlLRpgG~iifiEHva~~y~~~------n~i~q~v~ep~~~~~~dGC~ltrd~~-e~Leda~ 224 (252)
T KOG4300|consen 154 VLCSVEDP--VKQLNEVRRLLRPGGRIIFIEHVAGEYGFW------NRILQQVAEPLWHLESDGCVLTRDTG-ELLEDAE 224 (252)
T ss_pred EEeccCCH--HHHHHHHHHhcCCCcEEEEEecccccchHH------HHHHHHHhchhhheeccceEEehhHH-HHhhhcc
Confidence 99987766 488999999999999999999876543221 1111111 1111 123444566555 6779999
Q ss_pred CceeEEEeecC
Q 030025 165 FSGIRFVCFFH 175 (184)
Q Consensus 165 f~~i~~~~~~~ 175 (184)
|+.++.++...
T Consensus 225 f~~~~~kr~~~ 235 (252)
T KOG4300|consen 225 FSIDSCKRFNF 235 (252)
T ss_pred cccchhhcccC
Confidence 99998877653
No 58
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.71 E-value=1.3e-15 Score=108.33 Aligned_cols=118 Identities=17% Similarity=0.192 Sum_probs=91.8
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cCCCC-CEEEechhh
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SVPNG-DAILIKWIL 89 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~~~~-D~i~~~~~l 89 (184)
+++..+|||+|||+|..+..++...+..+++++|. +.|++.++++ ++++++.+|+.+ +.... |+|++...
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~- 121 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV- 121 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc-
Confidence 45578999999999999999999889999999999 8899888763 469999999987 33323 99998652
Q ss_pred hcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeE
Q 030025 90 HDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIR 169 (184)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~ 169 (184)
.+. ..+++.+++.|+|||++++..... ...++.++.++.|+...+
T Consensus 122 ---~~~--~~~l~~~~~~LkpGG~lv~~~~~~------------------------------~~~~l~~~~~~~~~~~~~ 166 (187)
T PRK00107 122 ---ASL--SDLVELCLPLLKPGGRFLALKGRD------------------------------PEEEIAELPKALGGKVEE 166 (187)
T ss_pred ---cCH--HHHHHHHHHhcCCCeEEEEEeCCC------------------------------hHHHHHHHHHhcCceEee
Confidence 222 368999999999999999864211 245566677777988666
Q ss_pred EEe
Q 030025 170 FVC 172 (184)
Q Consensus 170 ~~~ 172 (184)
.+.
T Consensus 167 ~~~ 169 (187)
T PRK00107 167 VIE 169 (187)
T ss_pred eEE
Confidence 554
No 59
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.70 E-value=2.9e-16 Score=111.29 Aligned_cols=91 Identities=19% Similarity=0.169 Sum_probs=73.6
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cCCC-CCEEEechhhhc
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SVPN-GDAILIKWILHD 91 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~~~-~D~i~~~~~l~~ 91 (184)
++.+|||+|||+|..+..++...+..+++++|. +.|++.+++. ++++++.+|+.+ .... .|+|++.. +++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~ 120 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LAS 120 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhC
Confidence 378999999999999999998888899999999 7777766542 579999999987 3222 39999876 443
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 92 WSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 92 ~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
+ ..+++.++++|+|||.+++.
T Consensus 121 ~-----~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 121 L-----NVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred H-----HHHHHHHHHhcCCCCEEEEE
Confidence 3 25788999999999999985
No 60
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.70 E-value=2.5e-16 Score=116.26 Aligned_cols=157 Identities=15% Similarity=0.037 Sum_probs=104.1
Q ss_pred HHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-c--CCCC-
Q 030025 11 KILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-S--VPNG- 80 (184)
Q Consensus 11 ~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~--~~~~- 80 (184)
.+..... ..+..+|||||||+|.++..+++. ..+++++|. +.+++.++++ .++.+...|+.+ + .+..
T Consensus 39 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 115 (233)
T PRK05134 39 YIREHAG-GLFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQF 115 (233)
T ss_pred HHHHhcc-CCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCc
Confidence 3444443 456789999999999999988876 468999999 7888777643 346777777765 2 2233
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHH
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLA 160 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (184)
|+|++..+++|.++.. .+++.+.+.|+|||.+++..+................................+.++|.+++
T Consensus 116 D~Ii~~~~l~~~~~~~--~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 193 (233)
T PRK05134 116 DVVTCMEMLEHVPDPA--SFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWL 193 (233)
T ss_pred cEEEEhhHhhccCCHH--HHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHH
Confidence 9999999999988764 68999999999999999876532110000000000000000000000113356899999999
Q ss_pred HHcCCceeEEEe
Q 030025 161 TEAGFSGIRFVC 172 (184)
Q Consensus 161 ~~aGf~~i~~~~ 172 (184)
+++||+.++...
T Consensus 194 ~~~Gf~~v~~~~ 205 (233)
T PRK05134 194 RQAGLEVQDITG 205 (233)
T ss_pred HHCCCeEeeeee
Confidence 999999997754
No 61
>PRK06922 hypothetical protein; Provisional
Probab=99.70 E-value=2.1e-16 Score=128.70 Aligned_cols=104 Identities=23% Similarity=0.342 Sum_probs=87.2
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-c--CCCC--CEEEech
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-S--VPNG--DAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~--~~~~--D~i~~~~ 87 (184)
+.+..+|||+|||+|..+..+++.+|+.+++++|+ +.|++.|+++ .++.++++|+.+ + ++.. |+|+++.
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~ 495 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSS 495 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEch
Confidence 55678999999999999999999999999999999 8899888653 357788899876 3 4433 9999999
Q ss_pred hhhcCC-----------hHHHHHHHHHHHhhCCCCcEEEEEeeecC
Q 030025 88 ILHDWS-----------DEHCLKLLKNCHKSIPEGGKVIVVESVLP 122 (184)
Q Consensus 88 ~l~~~~-----------~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 122 (184)
++|++. .++...++++++++|||||.+++.|...+
T Consensus 496 vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 496 ILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred HHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 999762 34567899999999999999999986544
No 62
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.69 E-value=8e-16 Score=119.77 Aligned_cols=109 Identities=16% Similarity=0.224 Sum_probs=89.1
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---------CCceEEEcccCccCC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---------PGVKHVGGDMFQSVP 78 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---------~~i~~~~~d~~~~~~ 78 (184)
.+.+++.++ ....++|||+|||+|.++..+++++|..+++++|. +.+++.+++. .++++...|..+..+
T Consensus 217 trllL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~ 295 (378)
T PRK15001 217 ARFFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 295 (378)
T ss_pred HHHHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence 456788887 55557999999999999999999999999999999 7888888753 257888899877443
Q ss_pred C-C-CEEEechhhhc---CChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 79 N-G-DAILIKWILHD---WSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 79 ~-~-D~i~~~~~l~~---~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
. . |+|+|+-.+|. +.+....++|+.+++.|+|||.+++.-
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3 3 99999877764 344555689999999999999999964
No 63
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.68 E-value=3.3e-15 Score=108.44 Aligned_cols=140 Identities=11% Similarity=0.027 Sum_probs=102.8
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC------------------CCCceEEE
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE------------------YPGVKHVG 70 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------------------~~~i~~~~ 70 (184)
...++.+. .++.++|||+|||.|..+..|+++ +..++++|+ +.+++.+.+ ..++++.+
T Consensus 24 ~~~~~~l~-~~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 100 (213)
T TIGR03840 24 VKHWPALG-LPAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFC 100 (213)
T ss_pred HHHHHhhC-CCCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEE
Confidence 33444444 456789999999999999999986 679999999 887776411 14688999
Q ss_pred cccCc-cC---CCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCC
Q 030025 71 GDMFQ-SV---PNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYP 146 (184)
Q Consensus 71 ~d~~~-~~---~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (184)
+|+++ +. +..|.|+-..+++|++++.....++.+.++|||||++++.....+..... .
T Consensus 101 ~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~-----------------g- 162 (213)
T TIGR03840 101 GDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA-----------------G- 162 (213)
T ss_pred ccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC-----------------C-
Confidence 99987 32 22399999999999998888899999999999999988876654322100 0
Q ss_pred CccccCHHHHHHHHHHcCCceeEEE
Q 030025 147 GGKERTKHEFTTLATEAGFSGIRFV 171 (184)
Q Consensus 147 ~~~~~~~~~~~~~l~~aGf~~i~~~ 171 (184)
.....+.+++.++|.. +|.+..+.
T Consensus 163 pp~~~~~~eL~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 163 PPFSVSPAEVEALYGG-HYEIELLE 186 (213)
T ss_pred cCCCCCHHHHHHHhcC-CceEEEEe
Confidence 1123588999998864 45544443
No 64
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.68 E-value=7.6e-16 Score=117.54 Aligned_cols=156 Identities=11% Similarity=0.022 Sum_probs=101.8
Q ss_pred HhHHHHHHHhcCC--CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----------CCceEEEcc
Q 030025 7 LVLQKILEAYKGF--EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----------PGVKHVGGD 72 (184)
Q Consensus 7 ~~~~~l~~~~~~~--~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----------~~i~~~~~d 72 (184)
.+++.+++.+... .+..+|||+|||+|.++..+++. +.+++++|+ +.|++.++++ .++.|...|
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~D 205 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAND 205 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcc
Confidence 3445666666511 24679999999999999999986 568999999 8899887664 246788888
Q ss_pred cCccCCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhh-HhhhhCCC----
Q 030025 73 MFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADV-LVMTQYPG---- 147 (184)
Q Consensus 73 ~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---- 147 (184)
+.+.....|+|++..+++|++++....+++.+.++ .+||. ++.. .+.. ........ ......+.
T Consensus 206 l~~l~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~l-~~g~l-iIs~--~p~~-------~~~~~l~~~g~~~~g~~~~~r 274 (315)
T PLN02585 206 LESLSGKYDTVTCLDVLIHYPQDKADGMIAHLASL-AEKRL-IISF--APKT-------LYYDILKRIGELFPGPSKATR 274 (315)
T ss_pred hhhcCCCcCEEEEcCEEEecCHHHHHHHHHHHHhh-cCCEE-EEEe--CCcc-------hHHHHHHHHHhhcCCCCcCce
Confidence 75432233999999999999887666788888764 45554 4422 1111 00000000 00000000
Q ss_pred ccccCHHHHHHHHHHcCCceeEEEeecC
Q 030025 148 GKERTKHEFTTLATEAGFSGIRFVCFFH 175 (184)
Q Consensus 148 ~~~~~~~~~~~~l~~aGf~~i~~~~~~~ 175 (184)
...++.+++.++++++||++.+......
T Consensus 275 ~y~~s~eel~~lL~~AGf~v~~~~~~~~ 302 (315)
T PLN02585 275 AYLHAEADVERALKKAGWKVARREMTAT 302 (315)
T ss_pred eeeCCHHHHHHHHHHCCCEEEEEEEeec
Confidence 1134799999999999999886654443
No 65
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.68 E-value=1.2e-16 Score=112.11 Aligned_cols=136 Identities=18% Similarity=0.268 Sum_probs=100.5
Q ss_pred HHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEcccCccCCCC--CEEEec
Q 030025 14 EAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQSVPNG--DAILIK 86 (184)
Q Consensus 14 ~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~~~~~~--D~i~~~ 86 (184)
..++ -++..+++|+|||.|.++..|+.++ -+++++|. +.+++.|+++ ++|++++.|+.+.+|.. |+|+++
T Consensus 37 aaLp-~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~S 113 (201)
T PF05401_consen 37 AALP-RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLS 113 (201)
T ss_dssp HHHT-TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEE
T ss_pred HhcC-ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEe
Confidence 3577 7788999999999999999999996 48899999 8888888764 89999999998855554 999999
Q ss_pred hhhhcCCh-HHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCC
Q 030025 87 WILHDWSD-EHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGF 165 (184)
Q Consensus 87 ~~l~~~~~-~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 165 (184)
.++|++.+ ++...+++++.+.|+|||.|++....- ..... -++....+.+.++|++. |
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd---------------~~c~~-----wgh~~ga~tv~~~~~~~-~ 172 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARD---------------ANCRR-----WGHAAGAETVLEMLQEH-L 172 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H---------------HHHHH-----TT-S--HHHHHHHHHHH-S
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC---------------Ccccc-----cCcccchHHHHHHHHHH-h
Confidence 99999985 567789999999999999999977521 01111 23445788889998875 5
Q ss_pred ceeEEEee
Q 030025 166 SGIRFVCF 173 (184)
Q Consensus 166 ~~i~~~~~ 173 (184)
..++...+
T Consensus 173 ~~~~~~~~ 180 (201)
T PF05401_consen 173 TEVERVEC 180 (201)
T ss_dssp EEEEEEEE
T ss_pred hheeEEEE
Confidence 55555444
No 66
>PTZ00146 fibrillarin; Provisional
Probab=99.67 E-value=1.8e-14 Score=107.86 Aligned_cols=146 Identities=12% Similarity=0.115 Sum_probs=100.5
Q ss_pred ccHHhHHHHHH---HhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hh----HhhhCCCCCCceEEEcccC
Q 030025 4 HTTLVLQKILE---AYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PH----VIQHSPEYPGVKHVGGDMF 74 (184)
Q Consensus 4 ~~~~~~~~l~~---~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~----~~~~a~~~~~i~~~~~d~~ 74 (184)
+-+.++..|+. .++ +++..+|||+|||+|.++..+++.. +.-+++++|+ +. +++.+++++|+.++..|+.
T Consensus 113 ~rSKlaa~i~~g~~~l~-IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~ 191 (293)
T PTZ00146 113 FRSKLAAAIIGGVANIP-IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDAR 191 (293)
T ss_pred cccHHHHHHHCCcceec-cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCcc
Confidence 34455555644 334 6788999999999999999999985 4568999998 53 6677777789999999986
Q ss_pred cc------CCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCc
Q 030025 75 QS------VPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGG 148 (184)
Q Consensus 75 ~~------~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (184)
.+ .+..|+|++..+ + ++ +...++.++.+.|||||.++|.......... + +..
T Consensus 192 ~p~~y~~~~~~vDvV~~Dva-~--pd-q~~il~~na~r~LKpGG~~vI~ika~~id~g-~-----------------~pe 249 (293)
T PTZ00146 192 YPQKYRMLVPMVDVIFADVA-Q--PD-QARIVALNAQYFLKNGGHFIISIKANCIDST-A-----------------KPE 249 (293)
T ss_pred ChhhhhcccCCCCEEEEeCC-C--cc-hHHHHHHHHHHhccCCCEEEEEEeccccccC-C-----------------CHH
Confidence 53 122399988764 1 22 3345677899999999999994322111100 0 000
Q ss_pred cccCHHHHHHHHHHcCCceeEEEeec
Q 030025 149 KERTKHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 149 ~~~~~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
..+. +++ ++|+++||+.++.+.+.
T Consensus 250 ~~f~-~ev-~~L~~~GF~~~e~v~L~ 273 (293)
T PTZ00146 250 VVFA-SEV-QKLKKEGLKPKEQLTLE 273 (293)
T ss_pred HHHH-HHH-HHHHHcCCceEEEEecC
Confidence 1112 444 88999999999888764
No 67
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.67 E-value=1.7e-15 Score=100.82 Aligned_cols=106 Identities=15% Similarity=0.178 Sum_probs=85.1
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc---
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ--- 75 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~--- 75 (184)
..+...+++.+. ..+..+|||+|||+|..+..++++.|..+++++|. +.+++.+++. +++.++..|+..
T Consensus 5 ~~~~~~~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 83 (124)
T TIGR02469 5 REVRALTLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE 83 (124)
T ss_pred HHHHHHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh
Confidence 445666788887 77788999999999999999999988899999999 8888877642 578888888764
Q ss_pred cCCCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 76 SVPNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 76 ~~~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
..+.. |+|++....++ ...+++++++.|+|||++++.
T Consensus 84 ~~~~~~D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 84 DSLPEPDRVFIGGSGGL-----LQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred hhcCCCCEEEECCcchh-----HHHHHHHHHHHcCCCCEEEEE
Confidence 12233 99998765543 237899999999999999985
No 68
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.66 E-value=8.2e-15 Score=113.33 Aligned_cols=110 Identities=18% Similarity=0.257 Sum_probs=87.7
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCccCCCC-C
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQSVPNG-D 81 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~~~~~~-D 81 (184)
...+++.++ ....++|||+|||+|.++..+++++|..+++++|+ +.+++.+++. ...+++..|..+..+.. |
T Consensus 185 t~lLl~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fD 263 (342)
T PRK09489 185 SQLLLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFD 263 (342)
T ss_pred HHHHHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCcc
Confidence 356677776 44557899999999999999999999999999999 8899888753 23567777877644444 9
Q ss_pred EEEechhhhcC---ChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 82 AILIKWILHDW---SDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 82 ~i~~~~~l~~~---~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+|+++..+|+. .......+++++.+.|+|||.|++.-.
T Consensus 264 lIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 264 MIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred EEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 99999998863 234556899999999999999998654
No 69
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.65 E-value=1.2e-15 Score=108.07 Aligned_cols=142 Identities=14% Similarity=0.163 Sum_probs=98.4
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-cCCCC-
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-SVPNG- 80 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~~~~~- 80 (184)
...++++++ .-+.+++||+|||.|..+..|+++ +..|+++|. +..++.+++. -.++....|+.+ .++..
T Consensus 19 hs~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~y 95 (192)
T PF03848_consen 19 HSEVLEAVP-LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEY 95 (192)
T ss_dssp -HHHHHHCT-TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTE
T ss_pred cHHHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCc
Confidence 455677777 667899999999999999999998 678999998 6666654332 348889999987 55555
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHH
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLA 160 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (184)
|+|++..++++++.+....+++++.+.++|||++++......... ... . +....+.+.++.+.+
T Consensus 96 D~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~-p~~-------~--------~~~f~~~~~EL~~~y 159 (192)
T PF03848_consen 96 DFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDY-PCP-------S--------PFPFLLKPGELREYY 159 (192)
T ss_dssp EEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS---S-------S----------S--B-TTHHHHHT
T ss_pred CEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCC-CCC-------C--------CCCcccCHHHHHHHh
Confidence 999999999999988878999999999999999998665432211 000 0 011224678888888
Q ss_pred HHcCCceeEEE
Q 030025 161 TEAGFSGIRFV 171 (184)
Q Consensus 161 ~~aGf~~i~~~ 171 (184)
. |+++++..
T Consensus 160 ~--dW~il~y~ 168 (192)
T PF03848_consen 160 A--DWEILKYN 168 (192)
T ss_dssp T--TSEEEEEE
T ss_pred C--CCeEEEEE
Confidence 7 68877653
No 70
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.65 E-value=1.8e-15 Score=110.91 Aligned_cols=143 Identities=12% Similarity=0.080 Sum_probs=100.8
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----C-CceEEEcccCc-cCC--CC-CEEEechhh
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----P-GVKHVGGDMFQ-SVP--NG-DAILIKWIL 89 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~-~i~~~~~d~~~-~~~--~~-D~i~~~~~l 89 (184)
...+|||+|||+|.++..+++.. .+++++|. +.+++.++++ . ++.+...|+.+ +.. .. |+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 47799999999999999888764 46999999 7888777653 2 58888888875 322 33 999999999
Q ss_pred hcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhh--hHhhh----hCCCccccCHHHHHHHHHHc
Q 030025 90 HDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLAD--VLVMT----QYPGGKERTKHEFTTLATEA 163 (184)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~l~~a 163 (184)
+|+.+++ .+++++.+.|+|||.+++.+....... ....... ..... ........+..++.++++++
T Consensus 123 ~~~~~~~--~~l~~~~~~L~~gG~l~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 194 (224)
T TIGR01983 123 EHVPDPQ--AFIRACAQLLKPGGILFFSTINRTPKS------YLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESA 194 (224)
T ss_pred HhCCCHH--HHHHHHHHhcCCCcEEEEEecCCCchH------HHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHc
Confidence 9998765 789999999999999998765322100 0000000 00000 00012345889999999999
Q ss_pred CCceeEEEee
Q 030025 164 GFSGIRFVCF 173 (184)
Q Consensus 164 Gf~~i~~~~~ 173 (184)
||+.++....
T Consensus 195 G~~i~~~~~~ 204 (224)
T TIGR01983 195 GLRVKDVKGL 204 (224)
T ss_pred CCeeeeeeeE
Confidence 9999887643
No 71
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.64 E-value=5.7e-15 Score=110.02 Aligned_cols=137 Identities=17% Similarity=0.254 Sum_probs=101.5
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCccCC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSVP 78 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~~ 78 (184)
..+...+++.+. ....+|||+|||+|..+..+++.++..+++++|. +.+++.+++. +++.++.+|+.+.++
T Consensus 74 ~~l~~~~l~~~~--~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~ 151 (251)
T TIGR03534 74 EELVEAALERLK--KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP 151 (251)
T ss_pred HHHHHHHHHhcc--cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc
Confidence 345556666654 3456999999999999999999999999999999 8888887653 468999999987554
Q ss_pred C-C-CEEEechhhh------cCChH------------------HHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCcccc
Q 030025 79 N-G-DAILIKWILH------DWSDE------------------HCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSK 132 (184)
Q Consensus 79 ~-~-D~i~~~~~l~------~~~~~------------------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~ 132 (184)
. . |+|+++-.++ .+... ....+++++.+.|+|||++++...
T Consensus 152 ~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~------------- 218 (251)
T TIGR03534 152 GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG------------- 218 (251)
T ss_pred CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC-------------
Confidence 3 3 9999854322 12111 113678999999999999988320
Q ss_pred chhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEeec
Q 030025 133 INSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
....+++.++++++||+.++++.-.
T Consensus 219 -----------------~~~~~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 219 -----------------YDQGEAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred -----------------ccHHHHHHHHHHhCCCCceEEEeCC
Confidence 0135678899999999988877643
No 72
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.63 E-value=1e-15 Score=110.51 Aligned_cols=98 Identities=14% Similarity=0.179 Sum_probs=77.4
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEccc-Cc-c--CCC-C-CEEEech
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDM-FQ-S--VPN-G-DAILIKW 87 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~-~~-~--~~~-~-D~i~~~~ 87 (184)
+..+|||+|||+|..+..+++.+|..+++++|. +.+++.+++. +++.++++|+ .. + ++. . |+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 568999999999999999999999899999999 8899877652 5799999998 43 3 433 3 9998876
Q ss_pred hhhcCCh------HHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 88 ILHDWSD------EHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 88 ~l~~~~~------~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
...+... .....+++++.+.|||||.+++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 5432211 012468999999999999999955
No 73
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.63 E-value=1.9e-15 Score=107.73 Aligned_cols=150 Identities=19% Similarity=0.260 Sum_probs=103.8
Q ss_pred HHHHHHhcC-----CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CC-ceEEEcccCc--
Q 030025 10 QKILEAYKG-----FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PG-VKHVGGDMFQ-- 75 (184)
Q Consensus 10 ~~l~~~~~~-----~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~-i~~~~~d~~~-- 75 (184)
+.++..+.. ..+..+.||.|+|.|..++.++... --++-.+|. +.+++.|+++ ++ .++.+.-+.+
T Consensus 39 ~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~ 117 (218)
T PF05891_consen 39 RNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFT 117 (218)
T ss_dssp HHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG--
T ss_pred HHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhcc
Confidence 445555542 1256899999999999999887654 237777887 8888888742 23 3555555555
Q ss_pred cCCC-CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHH
Q 030025 76 SVPN-GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKH 154 (184)
Q Consensus 76 ~~~~-~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
|.+. +|+|++-+++.|+.|++..++|+++++.|+|+|.+++-|....+.. ..++. ..++--|+.+
T Consensus 118 P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D~-----~DsSvTRs~~ 183 (218)
T PF05891_consen 118 PEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFDE-----EDSSVTRSDE 183 (218)
T ss_dssp --TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEET-----TTTEEEEEHH
T ss_pred CCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccCC-----ccCeeecCHH
Confidence 3322 3999999999999999999999999999999999999998876531 01111 1234457899
Q ss_pred HHHHHHHHcCCceeEEEeec
Q 030025 155 EFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 155 ~~~~~l~~aGf~~i~~~~~~ 174 (184)
.+.++|++||+++++...-.
T Consensus 184 ~~~~lF~~AGl~~v~~~~Q~ 203 (218)
T PF05891_consen 184 HFRELFKQAGLRLVKEEKQK 203 (218)
T ss_dssp HHHHHHHHCT-EEEEEEE-T
T ss_pred HHHHHHHHcCCEEEEecccc
Confidence 99999999999999876543
No 74
>PLN03075 nicotianamine synthase; Provisional
Probab=99.63 E-value=3.4e-15 Score=112.12 Aligned_cols=105 Identities=14% Similarity=0.173 Sum_probs=82.8
Q ss_pred HHHHhcCCCCCCeEEEecCCcChHHHHHH--hhCCCCeEEEeec-hhHhhhCCCC--------CCceEEEcccCccC---
Q 030025 12 ILEAYKGFEHIKQLVDVGGSLGNTLKAIT--SKYPHIKGINFDL-PHVIQHSPEY--------PGVKHVGGDMFQSV--- 77 (184)
Q Consensus 12 l~~~~~~~~~~~~ilDiG~G~G~~~~~l~--~~~~~~~~~~~D~-~~~~~~a~~~--------~~i~~~~~d~~~~~--- 77 (184)
++..+. ..++++|+|||||.|.++..++ ..+|+.+++++|. +.+++.|++. ++++|..+|+.+..
T Consensus 115 ~L~~~~-~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l 193 (296)
T PLN03075 115 LLSQHV-NGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESL 193 (296)
T ss_pred HHHHhh-cCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccccc
Confidence 344444 4478999999999875544433 4579999999999 8888888763 56999999998732
Q ss_pred CCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 78 PNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 78 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
...|+|++. +++++..++..++++++.+.|+|||.+++-.
T Consensus 194 ~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 194 KEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred CCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 233999999 9999965666799999999999999999954
No 75
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.63 E-value=3.3e-14 Score=102.12 Aligned_cols=154 Identities=15% Similarity=0.196 Sum_probs=98.6
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc---cCCC-C-CEE
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ---SVPN-G-DAI 83 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~~~~-~-D~i 83 (184)
+.+.+.+ ++..+|||+|||+|.++..+++.. ...++++|. +.+++.+++ .+++++.+|+.+ +++. . |+|
T Consensus 5 ~~i~~~i---~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 5 ESILNLI---PPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred HHHHHhc---CCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEE
Confidence 3444443 356799999999999999887764 567899999 888887754 468888888865 2333 3 999
Q ss_pred EechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCc-c-ccchhhhh-h-HhhhhCCCccccCHHHHHHH
Q 030025 84 LIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGT-H-SKINSLAD-V-LVMTQYPGGKERTKHEFTTL 159 (184)
Q Consensus 84 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~-~-~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 159 (184)
+++.++||+++++ .+++++.+.+++ .++.-+.......... . ........ . ......+..+.++.+++.++
T Consensus 80 i~~~~l~~~~d~~--~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l 154 (194)
T TIGR02081 80 ILSQTLQATRNPE--EILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDL 154 (194)
T ss_pred EEhhHhHcCcCHH--HHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHH
Confidence 9999999998764 678888887654 4443221111000000 0 00000000 0 00000112346799999999
Q ss_pred HHHcCCceeEEEee
Q 030025 160 ATEAGFSGIRFVCF 173 (184)
Q Consensus 160 l~~aGf~~i~~~~~ 173 (184)
++++||++++....
T Consensus 155 l~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 155 CGELNLRILDRAAF 168 (194)
T ss_pred HHHCCCEEEEEEEe
Confidence 99999999987654
No 76
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.62 E-value=5e-14 Score=102.61 Aligned_cols=133 Identities=11% Similarity=0.048 Sum_probs=98.8
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC------------------CCCceEEEcccCcc-CC
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE------------------YPGVKHVGGDMFQS-VP 78 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------------------~~~i~~~~~d~~~~-~~ 78 (184)
+++..+|||+|||.|..+..|+++ +.+|+++|+ +.+++.+.+ ..++++.++|+.+. ..
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 556789999999999999999986 679999999 777775421 14688899999873 21
Q ss_pred --CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHH
Q 030025 79 --NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHE 155 (184)
Q Consensus 79 --~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
.. |.|+-..+++|++++...+.++.+.++|+|||++++.....+..... . .....+.++
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~-----------------g-Pp~~~~~~e 174 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELA-----------------G-PPFSVSDEE 174 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCC-----------------C-CCCCCCHHH
Confidence 23 99999999999998888899999999999999866655444322100 0 112358899
Q ss_pred HHHHHHHcCCceeEEEe
Q 030025 156 FTTLATEAGFSGIRFVC 172 (184)
Q Consensus 156 ~~~~l~~aGf~~i~~~~ 172 (184)
+.++|.. +|.+..+..
T Consensus 175 l~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 175 VEALYAG-CFEIELLER 190 (218)
T ss_pred HHHHhcC-CceEEEeee
Confidence 9999863 366655543
No 77
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.60 E-value=6.1e-15 Score=111.20 Aligned_cols=92 Identities=21% Similarity=0.306 Sum_probs=75.3
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCC---CeEEEeec-hhHhhhCCCC-CCceEEEcccCc-cCCCC--CEEEechhhhc
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPH---IKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQ-SVPNG--DAILIKWILHD 91 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~---~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~-~~~~~--D~i~~~~~l~~ 91 (184)
.+..+|||+|||+|.++..+++..+. ..++++|+ +.+++.|++. +++.+..+|..+ +++.. |+|++..+-
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~-- 161 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAP-- 161 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCC--
Confidence 35578999999999999999988764 37899999 8899888765 889999999987 66654 999886531
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 92 WSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 92 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
..+++++|+|||||++++..+.
T Consensus 162 -------~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 162 -------CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred -------CCHHHHHhhccCCCEEEEEeCC
Confidence 2368899999999999997643
No 78
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.60 E-value=9.7e-15 Score=105.69 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=82.8
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS 76 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~ 76 (184)
..+...+++.+. ..+..+|||+|||+|..+..+++..+ ..+++++|. +.+++.++++ ++++++.+|..+.
T Consensus 58 p~~~~~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~ 136 (205)
T PRK13944 58 PHMVAMMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG 136 (205)
T ss_pred HHHHHHHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC
Confidence 345677788887 77889999999999999999998763 569999999 8888877653 3588999999873
Q ss_pred CC---CCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 77 VP---NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 77 ~~---~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
++ ..|+|++..++++++ +++.+.|+|||+|++..
T Consensus 137 ~~~~~~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 137 LEKHAPFDAIIVTAAASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred CccCCCccEEEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence 32 239999998887654 35778999999998843
No 79
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.60 E-value=3.8e-15 Score=104.78 Aligned_cols=110 Identities=19% Similarity=0.329 Sum_probs=86.0
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCccCC-C
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSVP-N 79 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~~-~ 79 (184)
-...|++.+. ..+.++|||+|||+|.++..++++.|..+++++|+ +.+++.+++. .+++++..|..+..+ .
T Consensus 19 ~t~lL~~~l~-~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~ 97 (170)
T PF05175_consen 19 GTRLLLDNLP-KHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDG 97 (170)
T ss_dssp HHHHHHHHHH-HHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTT
T ss_pred HHHHHHHHHh-hccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccccc
Confidence 3445666666 44788999999999999999999999989999999 8898888663 348899999988555 3
Q ss_pred C-CEEEechhhhcCCh---HHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 80 G-DAILIKWILHDWSD---EHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 80 ~-D~i~~~~~l~~~~~---~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
. |+|+++-.++.-.+ .-..++++.+.+.|+|||.+++.-
T Consensus 98 ~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 98 KFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp CEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 3 99999888765433 234689999999999999998744
No 80
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.2e-13 Score=103.07 Aligned_cols=110 Identities=15% Similarity=0.238 Sum_probs=89.8
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---C---CceEEEcccCccCCCC-
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---P---GVKHVGGDMFQSVPNG- 80 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~---~i~~~~~d~~~~~~~~- 80 (184)
.+.+++.++ .....+|||+|||.|.++..+++.+|..+++-+|. ..+++.|++. + +..+...|..++.+..
T Consensus 147 S~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf 225 (300)
T COG2813 147 SRLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF 225 (300)
T ss_pred HHHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence 467888888 66667999999999999999999999999999999 7888888875 2 3356777777755544
Q ss_pred CEEEechhhhcC---ChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 81 DAILIKWILHDW---SDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 81 D~i~~~~~l~~~---~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
|+|+|+=.||.= .+.-..+++..+++.|++||.|.|.-.
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 999999998862 233345899999999999999999654
No 81
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.59 E-value=7.6e-14 Score=97.28 Aligned_cols=131 Identities=16% Similarity=0.165 Sum_probs=103.0
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCcc--
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQS-- 76 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~-- 76 (184)
..+.-..++++. +.++.+++|||||||+.+..++...|..+++++|. +++++..+++ +|+..+.+|+.+.
T Consensus 20 ~EIRal~ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~ 98 (187)
T COG2242 20 EEIRALTLSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP 98 (187)
T ss_pred HHHHHHHHHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc
Confidence 445566778888 88999999999999999999998899999999998 7777766553 8999999999873
Q ss_pred -CCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHH
Q 030025 77 -VPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHE 155 (184)
Q Consensus 77 -~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
.+..|.|++... ..+ ..+|+.+...|||||+++..-...+ +...
T Consensus 99 ~~~~~daiFIGGg-~~i-----~~ile~~~~~l~~ggrlV~naitlE-----------------------------~~~~ 143 (187)
T COG2242 99 DLPSPDAIFIGGG-GNI-----EEILEAAWERLKPGGRLVANAITLE-----------------------------TLAK 143 (187)
T ss_pred CCCCCCEEEECCC-CCH-----HHHHHHHHHHcCcCCeEEEEeecHH-----------------------------HHHH
Confidence 333499999888 432 3789999999999999998432221 3455
Q ss_pred HHHHHHHcCC-ceeEEEe
Q 030025 156 FTTLATEAGF-SGIRFVC 172 (184)
Q Consensus 156 ~~~~l~~aGf-~~i~~~~ 172 (184)
..+++++.|+ +++++..
T Consensus 144 a~~~~~~~g~~ei~~v~i 161 (187)
T COG2242 144 ALEALEQLGGREIVQVQI 161 (187)
T ss_pred HHHHHHHcCCceEEEEEe
Confidence 6788899999 5555543
No 82
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.59 E-value=6.8e-14 Score=101.45 Aligned_cols=106 Identities=18% Similarity=0.217 Sum_probs=80.5
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeechhHhhhCCCCCCceEEEcccCcc---------CCC
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQS---------VPN 79 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~---------~~~ 79 (184)
.++.+.+..+++..+|||||||+|.++..++++. +..+++++|+..| ...+++.++++|+.+. .+.
T Consensus 40 ~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----~~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 40 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----DPIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred HHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----cCCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 3445555535778899999999999999999986 4579999999443 2346899999999872 333
Q ss_pred -C-CEEEechhhhcCChHH---------HHHHHHHHHhhCCCCcEEEEEee
Q 030025 80 -G-DAILIKWILHDWSDEH---------CLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 80 -~-D~i~~~~~l~~~~~~~---------~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
. |+|++..+.++.+.+. ...+|+.+.+.|+|||.+++...
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 3 9999987766654321 13589999999999999999654
No 83
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.58 E-value=1.5e-13 Score=103.73 Aligned_cols=136 Identities=17% Similarity=0.266 Sum_probs=100.2
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCccCC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSVP 78 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~~ 78 (184)
..+++.++.... ..+..+|||+|||+|..+..++...|..+++++|+ +.+++.++++ .++.++.+|+.++.+
T Consensus 94 e~l~~~~~~~~~-~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~ 172 (275)
T PRK09328 94 EELVEWALEALL-LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP 172 (275)
T ss_pred HHHHHHHHHhcc-ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC
Confidence 445555555555 56778999999999999999999999999999999 8888877653 479999999987544
Q ss_pred -CC-CEEEechhhh------cCCh------------------HHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCcccc
Q 030025 79 -NG-DAILIKWILH------DWSD------------------EHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSK 132 (184)
Q Consensus 79 -~~-D~i~~~~~l~------~~~~------------------~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~ 132 (184)
.. |+|+++-... .+.+ +....+++++.+.|+|||++++.- . .
T Consensus 173 ~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g--~--------- 240 (275)
T PRK09328 173 GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-G--Y--------- 240 (275)
T ss_pred CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-C--c---------
Confidence 33 9998853221 1111 122468889999999999998821 0 0
Q ss_pred chhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEe
Q 030025 133 INSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVC 172 (184)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~ 172 (184)
...+++.+++++.||..++++.
T Consensus 241 ------------------~~~~~~~~~l~~~gf~~v~~~~ 262 (275)
T PRK09328 241 ------------------DQGEAVRALLAAAGFADVETRK 262 (275)
T ss_pred ------------------hHHHHHHHHHHhCCCceeEEec
Confidence 1245688899999999877754
No 84
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.58 E-value=2.2e-13 Score=98.17 Aligned_cols=105 Identities=14% Similarity=0.180 Sum_probs=80.6
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS 76 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~ 76 (184)
..+....+..+. +.+..+|||+|||+|.++..+++.. +..+++++|. +.+++.++++ +++.++.+|+.+.
T Consensus 26 ~~~r~~~l~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~ 104 (198)
T PRK00377 26 EEIRALALSKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI 104 (198)
T ss_pred HHHHHHHHHHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh
Confidence 344445567777 8889999999999999999998764 5679999999 8898877543 4688888888762
Q ss_pred ---CCC-CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 77 ---VPN-GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 77 ---~~~-~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
.+. .|.|++.... .+...+++.+.+.|+|||++++
T Consensus 105 l~~~~~~~D~V~~~~~~-----~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 105 LFTINEKFDRIFIGGGS-----EKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred HhhcCCCCCEEEECCCc-----ccHHHHHHHHHHHcCCCcEEEE
Confidence 223 3999885422 2234789999999999999987
No 85
>PRK14968 putative methyltransferase; Provisional
Probab=99.57 E-value=2.1e-13 Score=97.26 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=95.9
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CC--ceEEEcccCccCCC-
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PG--VKHVGGDMFQSVPN- 79 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~--i~~~~~d~~~~~~~- 79 (184)
..+++.+. ..+..+|||+|||+|.++..++++ ..+++++|. +.+++.+++. .+ +.++..|+.++++.
T Consensus 13 ~~l~~~~~-~~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 89 (188)
T PRK14968 13 FLLAENAV-DKKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGD 89 (188)
T ss_pred HHHHHhhh-ccCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccccc
Confidence 34455554 456789999999999999999987 579999999 8888877543 22 88899998875443
Q ss_pred C-CEEEechhhhcCC-------------------hHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhh
Q 030025 80 G-DAILIKWILHDWS-------------------DEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADV 139 (184)
Q Consensus 80 ~-D~i~~~~~l~~~~-------------------~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 139 (184)
. |+|+++..+.... ......+++++.+.|+|||.+++.....
T Consensus 90 ~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~------------------ 151 (188)
T PRK14968 90 KFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL------------------ 151 (188)
T ss_pred CceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc------------------
Confidence 3 9999865543311 1123468999999999999998854211
Q ss_pred HhhhhCCCccccCHHHHHHHHHHcCCceeEEEee
Q 030025 140 LVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
...+++.++++++||+.......
T Consensus 152 -----------~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 152 -----------TGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred -----------CCHHHHHHHHHHCCCeeeeeeec
Confidence 13467788999999987766543
No 86
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.57 E-value=1.3e-13 Score=102.81 Aligned_cols=122 Identities=21% Similarity=0.215 Sum_probs=88.3
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---CCc----eEEEcccCccCCCCCEEEechhhhc
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---PGV----KHVGGDMFQSVPNGDAILIKWILHD 91 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~i----~~~~~d~~~~~~~~D~i~~~~~l~~ 91 (184)
.+..+|||+|||+|.++..+++..+ .+++++|+ +.+++.|+++ +++ .+..+| ...|+|+++...+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-----~~fD~Vvani~~~- 190 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-----LKADVIVANILAN- 190 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-----CCcCEEEEcCcHH-
Confidence 4678999999999999987766543 46999999 8999888764 333 111111 1249998864432
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEE
Q 030025 92 WSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFV 171 (184)
Q Consensus 92 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~ 171 (184)
....+++++.+.|||||++++++.... ..+++.+.+++.||+.++..
T Consensus 191 ----~~~~l~~~~~~~LkpgG~lilsgi~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 191 ----PLLELAPDLARLLKPGGRLILSGILEE-----------------------------QADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred ----HHHHHHHHHHHhcCCCcEEEEEECcHh-----------------------------hHHHHHHHHHHCCCEEEEEE
Confidence 234789999999999999999654321 35678889999999999888
Q ss_pred eecCceEEEE
Q 030025 172 CFFHNLWVME 181 (184)
Q Consensus 172 ~~~~~~~~~~ 181 (184)
.......++-
T Consensus 238 ~~~~W~~~~~ 247 (250)
T PRK00517 238 ERGEWVALVG 247 (250)
T ss_pred EeCCEEEEEE
Confidence 7766555543
No 87
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.57 E-value=2.9e-14 Score=103.65 Aligned_cols=105 Identities=14% Similarity=0.192 Sum_probs=84.2
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC------CCceEEEcccCcc
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQS 76 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~ 76 (184)
+-.+...+++.+. +.+..+|||||||+|+.+..+++.. +..+++++|. +.+++.++++ .+++++.+|....
T Consensus 61 ~p~~~~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~ 139 (212)
T PRK13942 61 AIHMVAIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLG 139 (212)
T ss_pred cHHHHHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC
Confidence 4456778888887 8899999999999999999888875 4579999999 8999888764 5799999998763
Q ss_pred C-CC--CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 77 V-PN--GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 77 ~-~~--~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+ +. .|+|++...+++++ +.+.+.|||||++++..
T Consensus 140 ~~~~~~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 140 YEENAPYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCcCCCcCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 2 22 39999988776543 35667899999999853
No 88
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.57 E-value=8.9e-14 Score=101.72 Aligned_cols=142 Identities=14% Similarity=0.184 Sum_probs=107.1
Q ss_pred HHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc---cCCC--
Q 030025 13 LEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ---SVPN-- 79 (184)
Q Consensus 13 ~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~---~~~~-- 79 (184)
+.++...+..++|||+|||+|..+..++++.+.+++++|++ +.+.+.|++. ++++++++|+.+ ..+.
T Consensus 36 L~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~ 115 (248)
T COG4123 36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFAS 115 (248)
T ss_pred HHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccc
Confidence 33333366789999999999999999999988899999999 8888888764 689999999987 2222
Q ss_pred CCEEEechhhhcCChH----------------HHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhh
Q 030025 80 GDAILIKWILHDWSDE----------------HCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMT 143 (184)
Q Consensus 80 ~D~i~~~~~l~~~~~~----------------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (184)
.|+|+|+=.++-.... ....+++.+.++|||||++.+.-+.
T Consensus 116 fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~----------------------- 172 (248)
T COG4123 116 FDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP----------------------- 172 (248)
T ss_pred cCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH-----------------------
Confidence 3999996554432211 2347899999999999999984421
Q ss_pred hCCCccccCHHHHHHHHHHcCCceeEEEeec------CceEEEEEeC
Q 030025 144 QYPGGKERTKHEFTTLATEAGFSGIRFVCFF------HNLWVMEFYK 184 (184)
Q Consensus 144 ~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~~------~~~~~~~~~~ 184 (184)
....++.+++++.+|...++.... ....++++.|
T Consensus 173 -------erl~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k 212 (248)
T COG4123 173 -------ERLAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIK 212 (248)
T ss_pred -------HHHHHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEec
Confidence 135788899999999988877664 3455666654
No 89
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.56 E-value=2.1e-13 Score=103.32 Aligned_cols=127 Identities=17% Similarity=0.245 Sum_probs=93.9
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCCC-C-CEEEechh-
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVPN-G-DAILIKWI- 88 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~~-~-D~i~~~~~- 88 (184)
.+..+|||+|||+|.++..+++..|+.+++++|+ +.+++.|+++ .++.++.+|+.+..+. . |+|+++-.
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence 3457999999999999999999999999999999 8999888764 3689999999775543 3 99998521
Q ss_pred ------------hhcCCh----------HHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCC
Q 030025 89 ------------LHDWSD----------EHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYP 146 (184)
Q Consensus 89 ------------l~~~~~----------~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (184)
++|-+. .....+++.+.+.|+|||++++.- .
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~-g-------------------------- 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV-G-------------------------- 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE-C--------------------------
Confidence 111110 123578999999999999988722 1
Q ss_pred CccccCHHHHHHHHHHcCCceeEEEeecCce
Q 030025 147 GGKERTKHEFTTLATEAGFSGIRFVCFFHNL 177 (184)
Q Consensus 147 ~~~~~~~~~~~~~l~~aGf~~i~~~~~~~~~ 177 (184)
.+.+.+.+.+.+.||...........+
T Consensus 253 ----~~~~~v~~~~~~~~~~~~~~~~~~~~~ 279 (284)
T TIGR03533 253 ----NSMEALEEAYPDVPFTWLEFENGGDGV 279 (284)
T ss_pred ----cCHHHHHHHHHhCCCceeeecCCCcEE
Confidence 134567888888998877665544433
No 90
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.56 E-value=1.1e-14 Score=101.48 Aligned_cols=125 Identities=18% Similarity=0.228 Sum_probs=85.9
Q ss_pred EEeec-hhHhhhCCCC---------CCceEEEcccCc-cCCCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEE
Q 030025 49 INFDL-PHVIQHSPEY---------PGVKHVGGDMFQ-SVPNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVI 115 (184)
Q Consensus 49 ~~~D~-~~~~~~a~~~---------~~i~~~~~d~~~-~~~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~ 115 (184)
+|+|. +.|++.|+++ ++++++++|+.+ ++++. |+|++.+++|++++.. .++++++|+|||||.++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~--~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRL--RAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHH--HHHHHHHHHcCcCeEEE
Confidence 47899 9999988542 368999999988 66653 9999999999998664 78999999999999999
Q ss_pred EEeeecCCCCCCCcccc-ch-----------hhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEeecC
Q 030025 116 VVESVLPELPENGTHSK-IN-----------SLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFH 175 (184)
Q Consensus 116 i~~~~~~~~~~~~~~~~-~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~~~ 175 (184)
+.|...++......... .. .....+......-..+.+.+++.++++++||+.++......
T Consensus 79 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~ 150 (160)
T PLN02232 79 ILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISG 150 (160)
T ss_pred EEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcc
Confidence 99987544211000000 00 00000000000001345899999999999999998877653
No 91
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.55 E-value=1.6e-13 Score=98.72 Aligned_cols=107 Identities=16% Similarity=0.199 Sum_probs=82.6
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc---
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ--- 75 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~--- 75 (184)
..+...+++.+. ..+..+|||+|||+|.++..+++..+..+++++|. +.+++.++++ ++++++.+|+.+
T Consensus 26 ~~v~~~l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~ 104 (196)
T PRK07402 26 REVRLLLISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLA 104 (196)
T ss_pred HHHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHh
Confidence 344455777777 78889999999999999999998888899999999 8898887653 578999998865
Q ss_pred cCCC-CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 76 SVPN-GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 76 ~~~~-~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.... .|.+++... .....+++++.+.|+|||++++...
T Consensus 105 ~~~~~~d~v~~~~~------~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 105 QLAPAPDRVCIEGG------RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred hCCCCCCEEEEECC------cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 2222 276655321 1224789999999999999999764
No 92
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.55 E-value=1.7e-13 Score=96.15 Aligned_cols=144 Identities=17% Similarity=0.251 Sum_probs=103.2
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc---cCCCC--CEEEechhhhcC
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ---SVPNG--DAILIKWILHDW 92 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~~~~~--D~i~~~~~l~~~ 92 (184)
.++..+|||+|||.|.+...|.+. +++++.|+++ ++.+..+.+ .++..+++|+.+ .+++. |.|+++.+++++
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~-rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~ 88 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA-RGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAV 88 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH-cCCCEEECCHHHhHhhCCCCCccEEehHhHHHhH
Confidence 457899999999999999888875 6899999998 665544432 468899999987 35554 999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCC---------CCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHc
Q 030025 93 SDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPE---------NGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEA 163 (184)
Q Consensus 93 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 163 (184)
..++ .+|+++.|+ |...+++=+++..+.. -+..... -+.+..+++-+..|..++.++.++.
T Consensus 89 ~~P~--~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~l-----Py~WYdTPNih~~Ti~DFe~lc~~~ 158 (193)
T PF07021_consen 89 RRPD--EVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKAL-----PYEWYDTPNIHLCTIKDFEDLCREL 158 (193)
T ss_pred hHHH--HHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCC-----CCcccCCCCcccccHHHHHHHHHHC
Confidence 8775 678888776 5566765443332210 0000000 0112225566788999999999999
Q ss_pred CCceeEEEeec
Q 030025 164 GFSGIRFVCFF 174 (184)
Q Consensus 164 Gf~~i~~~~~~ 174 (184)
|+++++.....
T Consensus 159 ~i~I~~~~~~~ 169 (193)
T PF07021_consen 159 GIRIEERVFLD 169 (193)
T ss_pred CCEEEEEEEEc
Confidence 99998877654
No 93
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.54 E-value=6.2e-14 Score=102.28 Aligned_cols=102 Identities=13% Similarity=0.137 Sum_probs=82.1
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC------CCceEEEcccCccCC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSVP 78 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~~ 78 (184)
.+...+++.+. ..+..+|||||||+|..+..+++..+ ..+++++|. +.+++.|+++ .+++++.+|..+..+
T Consensus 64 ~~~~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~ 142 (215)
T TIGR00080 64 HMVAMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE 142 (215)
T ss_pred HHHHHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc
Confidence 45678888887 88899999999999999999998864 467999999 8899888754 579999999976322
Q ss_pred ---CCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 79 ---NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 79 ---~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
..|+|++.....++ .+.+.+.|+|||++++.
T Consensus 143 ~~~~fD~Ii~~~~~~~~--------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 143 PLAPYDRIYVTAAGPKI--------PEALIDQLKEGGILVMP 176 (215)
T ss_pred ccCCCCEEEEcCCcccc--------cHHHHHhcCcCcEEEEE
Confidence 23999987766543 44578899999999984
No 94
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.54 E-value=2.6e-14 Score=102.66 Aligned_cols=99 Identities=12% Similarity=0.227 Sum_probs=77.5
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-c---CCC-C-CEEEech
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-S---VPN-G-DAILIKW 87 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~---~~~-~-D~i~~~~ 87 (184)
...+|||||||+|.++..+++++|+..++++|. +.+++.|+++ .++.++.+|+.+ + ++. . |.|++.+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 457999999999999999999999999999999 8888877543 589999999975 2 333 3 8888866
Q ss_pred hhhcCChHH------HHHHHHHHHhhCCCCcEEEEEee
Q 030025 88 ILHDWSDEH------CLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 88 ~l~~~~~~~------~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
...+..... ...+++++.++|||||.+++...
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 543322110 13689999999999999998653
No 95
>PHA03411 putative methyltransferase; Provisional
Probab=99.53 E-value=2.1e-13 Score=101.20 Aligned_cols=124 Identities=10% Similarity=0.118 Sum_probs=93.7
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-CCceEEEcccCcc-CCCC-CEEEechhhhcCChHH
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQS-VPNG-DAILIKWILHDWSDEH 96 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~~-~~~~-D~i~~~~~l~~~~~~~ 96 (184)
...+|||+|||+|.++..++.+.+..+++++|+ +.|++.+++. +++.++.+|+.+. .... |+|+++-.+++.+..+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchh
Confidence 457999999999999999988876789999999 9999988775 7899999999873 2333 9999999998865332
Q ss_pred H------------------HHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHH
Q 030025 97 C------------------LKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTT 158 (184)
Q Consensus 97 ~------------------~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (184)
. ..+++.....|+|+|.+++. +...+ . .....+++++.+
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~--yss~~-----------~----------y~~sl~~~~y~~ 200 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA--YSGRP-----------Y----------YDGTMKSNKYLK 200 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE--Eeccc-----------c----------ccccCCHHHHHH
Confidence 2 24566777888888877664 11110 0 012347899999
Q ss_pred HHHHcCCce
Q 030025 159 LATEAGFSG 167 (184)
Q Consensus 159 ~l~~aGf~~ 167 (184)
+++++||..
T Consensus 201 ~l~~~g~~~ 209 (279)
T PHA03411 201 WSKQTGLVT 209 (279)
T ss_pred HHHhcCcEe
Confidence 999999874
No 96
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.52 E-value=4.2e-13 Score=101.81 Aligned_cols=138 Identities=13% Similarity=0.188 Sum_probs=97.4
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSV 77 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~ 77 (184)
..++..+++.+....+..+|||+|||+|.++..++..+++.+++++|+ +.+++.|+++ .++.++.+|+.+++
T Consensus 99 e~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~ 178 (284)
T TIGR00536 99 EELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL 178 (284)
T ss_pred HHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC
Confidence 345555555543122336999999999999999999999899999999 8898888764 34899999998865
Q ss_pred CC-C-CEEEech-------------hhhcCCh----------HHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCcccc
Q 030025 78 PN-G-DAILIKW-------------ILHDWSD----------EHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSK 132 (184)
Q Consensus 78 ~~-~-D~i~~~~-------------~l~~~~~----------~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~ 132 (184)
+. . |+|+++- +++|-+. .....+++++.+.|+|||++++... .
T Consensus 179 ~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g-~----------- 246 (284)
T TIGR00536 179 AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG-N----------- 246 (284)
T ss_pred cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC-c-----------
Confidence 54 3 9999851 2222111 1345789999999999999877321 0
Q ss_pred chhhhhhHhhhhCCCccccCHHHHHHHHH-HcCCceeEEEee
Q 030025 133 INSLADVLVMTQYPGGKERTKHEFTTLAT-EAGFSGIRFVCF 173 (184)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~aGf~~i~~~~~ 173 (184)
.....+.++++ +.||..+++.+-
T Consensus 247 ------------------~q~~~~~~~~~~~~~~~~~~~~~D 270 (284)
T TIGR00536 247 ------------------WQQKSLKELLRIKFTWYDVENGRD 270 (284)
T ss_pred ------------------cHHHHHHHHHHhcCCCceeEEecC
Confidence 02345666777 468887777653
No 97
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.52 E-value=7.7e-13 Score=101.15 Aligned_cols=95 Identities=17% Similarity=0.297 Sum_probs=75.1
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCCC-C-CEEEechh---
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVPN-G-DAILIKWI--- 88 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~~-~-D~i~~~~~--- 88 (184)
..+|||+|||+|.++..+++.+|..+++++|+ +.+++.|+++ ++++++.+|+.+.++. . |+|+++-.
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 36899999999999999999999999999999 8999888764 3589999998775443 3 99998521
Q ss_pred ----------hhcCCh----------HHHHHHHHHHHhhCCCCcEEEE
Q 030025 89 ----------LHDWSD----------EHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 89 ----------l~~~~~----------~~~~~~l~~~~~~L~pgG~l~i 116 (184)
++|-+. +-...+++++.+.|+|||++++
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 111111 2235789999999999999987
No 98
>PRK14967 putative methyltransferase; Provisional
Probab=99.52 E-value=8e-13 Score=96.95 Aligned_cols=112 Identities=16% Similarity=0.119 Sum_probs=80.0
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCccCCC-C
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQSVPN-G 80 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~~~~~-~ 80 (184)
+.-..+..+. ..+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.++++ .++.++.+|+.+..+. .
T Consensus 24 ~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~ 101 (223)
T PRK14967 24 LLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRP 101 (223)
T ss_pred HHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCC
Confidence 3444455555 6677899999999999999888763 358999999 8888877653 3477888888764433 3
Q ss_pred -CEEEechhhhcCCh-------------------HHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 81 -DAILIKWILHDWSD-------------------EHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 81 -D~i~~~~~l~~~~~-------------------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
|+|+++-..+.-+. .....+++++.+.|||||++++.....
T Consensus 102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 99998744322111 013468899999999999999865433
No 99
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.51 E-value=1.5e-13 Score=106.93 Aligned_cols=108 Identities=14% Similarity=0.179 Sum_probs=82.3
Q ss_pred HHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc---cCCCC
Q 030025 11 KILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ---SVPNG 80 (184)
Q Consensus 11 ~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~---~~~~~ 80 (184)
.+++.+. ......+||||||+|.++..+++++|+..++|+|+ +.+++.+.+. .|+.++.+|+.. .+++.
T Consensus 113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 4566665 44567999999999999999999999999999999 7787766442 689999999864 34543
Q ss_pred --CEEEechhhhcCChH----HHHHHHHHHHhhCCCCcEEEEEee
Q 030025 81 --DAILIKWILHDWSDE----HCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 81 --D~i~~~~~l~~~~~~----~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
|.|++.+..-+.... ....+++++.|+|+|||.+.+.+-
T Consensus 192 s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 192 SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 999886543321111 013789999999999999999653
No 100
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.50 E-value=7.6e-13 Score=100.54 Aligned_cols=118 Identities=14% Similarity=0.130 Sum_probs=84.5
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCCCC-CEEEechhhh
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVPNG-DAILIKWILH 90 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~~~-D~i~~~~~l~ 90 (184)
.+..+|||+|||+|.++..+++. ...+++++|+ +.+++.++++ .++.+...+........ |+|+++...+
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE 236 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH
Confidence 35689999999999999887765 3468999999 8899888764 23455555533322333 9999876543
Q ss_pred cCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEE
Q 030025 91 DWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRF 170 (184)
Q Consensus 91 ~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~ 170 (184)
. ...++.++.+.|+|||+++++..... ..+++.+.+++. |+.+++
T Consensus 237 ~-----l~~ll~~~~~~LkpgG~li~sgi~~~-----------------------------~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 237 V-----IKELYPQFSRLVKPGGWLILSGILET-----------------------------QAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred H-----HHHHHHHHHHHcCCCcEEEEEeCcHh-----------------------------HHHHHHHHHHcc-CceeeE
Confidence 2 34789999999999999999664321 246667777765 887776
Q ss_pred Eee
Q 030025 171 VCF 173 (184)
Q Consensus 171 ~~~ 173 (184)
...
T Consensus 282 ~~~ 284 (288)
T TIGR00406 282 RQR 284 (288)
T ss_pred ecc
Confidence 544
No 101
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.48 E-value=1.1e-12 Score=102.80 Aligned_cols=136 Identities=17% Similarity=0.249 Sum_probs=97.5
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc-cCC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~-~~~ 78 (184)
..+++.+++.+ ++..+|||+|||+|.++..+++..|..+++++|+ +.+++.++++ .++.++.+|+.+ ..+
T Consensus 239 E~LVe~aL~~l---~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~ 315 (423)
T PRK14966 239 EHLVEAVLARL---PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMP 315 (423)
T ss_pred HHHHHHhhhcc---CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccc
Confidence 34455555543 3456999999999999999999889999999999 9999988764 368999999876 332
Q ss_pred --CC-CEEEechhhhcCC-----------------------hHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCcccc
Q 030025 79 --NG-DAILIKWILHDWS-----------------------DEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSK 132 (184)
Q Consensus 79 --~~-D~i~~~~~l~~~~-----------------------~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~ 132 (184)
.. |+|+++-....-. -+-...+++.+.+.|+|||.+++ |...
T Consensus 316 ~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil-EiG~----------- 383 (423)
T PRK14966 316 SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL-EHGF----------- 383 (423)
T ss_pred cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE-EECc-----------
Confidence 23 9999954321100 01123677778889999999876 2211
Q ss_pred chhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEeec
Q 030025 133 INSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
...+.+.+++++.||..+++.+-.
T Consensus 384 ------------------~Q~e~V~~ll~~~Gf~~v~v~kDl 407 (423)
T PRK14966 384 ------------------DQGAAVRGVLAENGFSGVETLPDL 407 (423)
T ss_pred ------------------cHHHHHHHHHHHCCCcEEEEEEcC
Confidence 025678889999999988776543
No 102
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.47 E-value=2.1e-13 Score=97.36 Aligned_cols=147 Identities=14% Similarity=0.140 Sum_probs=105.0
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCc-eEEEcccC---c--cCCCC
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGV-KHVGGDMF---Q--SVPNG 80 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i-~~~~~d~~---~--~~~~~ 80 (184)
...+++.... ..+..++||+|||||-....+..+. .+.+|+|+ .+|++.|.++.-. ...++|.. . .....
T Consensus 113 ~l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~ 189 (287)
T COG4976 113 LLAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERF 189 (287)
T ss_pred HHHHHHHhcc-CCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcc
Confidence 3455666666 6678999999999999999998885 47799999 8999999876321 11222222 1 11223
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCcc-ccCHHHHHHH
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGK-ERTKHEFTTL 159 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 159 (184)
|+|+...|+-++..-+ .+|--+...|+|||.+.++.-..+++.. +.. .++.+ .++...+..+
T Consensus 190 DLi~AaDVl~YlG~Le--~~~~~aa~~L~~gGlfaFSvE~l~~~~~--------f~l-------~ps~RyAH~~~YVr~~ 252 (287)
T COG4976 190 DLIVAADVLPYLGALE--GLFAGAAGLLAPGGLFAFSVETLPDDGG--------FVL-------GPSQRYAHSESYVRAL 252 (287)
T ss_pred cchhhhhHHHhhcchh--hHHHHHHHhcCCCceEEEEecccCCCCC--------eec-------chhhhhccchHHHHHH
Confidence 9999999999998654 7899999999999999997655544310 111 01111 2367888999
Q ss_pred HHHcCCceeEEEeec
Q 030025 160 ATEAGFSGIRFVCFF 174 (184)
Q Consensus 160 l~~aGf~~i~~~~~~ 174 (184)
++..||+++++...+
T Consensus 253 l~~~Gl~~i~~~~tt 267 (287)
T COG4976 253 LAASGLEVIAIEDTT 267 (287)
T ss_pred HHhcCceEEEeeccc
Confidence 999999999987654
No 103
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.47 E-value=1.1e-12 Score=101.42 Aligned_cols=110 Identities=13% Similarity=0.074 Sum_probs=83.0
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SV 77 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~ 77 (184)
..++..+++... .++..+|||+|||+|.++..++.. ..+++++|+ +.|++.++++ .++.+..+|+.+ +.
T Consensus 168 ~~la~~~~~l~~-~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~ 244 (329)
T TIGR01177 168 PKLARAMVNLAR-VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPL 244 (329)
T ss_pred HHHHHHHHHHhC-CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCc
Confidence 345666777666 788889999999999999876654 578999999 8888877653 457899999987 55
Q ss_pred CC-C-CEEEechhhhcC-------ChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 78 PN-G-DAILIKWILHDW-------SDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 78 ~~-~-D~i~~~~~l~~~-------~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+. . |+|++.-.+... ..+-...+++++.+.|+|||++++..
T Consensus 245 ~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 245 SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 43 3 999996433211 11224589999999999999999854
No 104
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.47 E-value=3.3e-12 Score=91.27 Aligned_cols=104 Identities=14% Similarity=0.177 Sum_probs=75.7
Q ss_pred HHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeechhHhhhCCCCCCceEEEcccCcc---------CCC-
Q 030025 11 KILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQS---------VPN- 79 (184)
Q Consensus 11 ~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~---------~~~- 79 (184)
++.+.++.+.+..+|||+|||+|.++..+++++ +..+++++|++.+. ..+++.++.+|+.++ .+.
T Consensus 22 ~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 22 QLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred HHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 445555556788999999999999999999886 56789999993332 346788998998752 233
Q ss_pred C-CEEEechhhh--------cCC-hHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 80 G-DAILIKWILH--------DWS-DEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 80 ~-D~i~~~~~l~--------~~~-~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
. |+|++..+.+ |.. .+....+++.+.+.|+|||++++..
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 3 9999864322 111 1122478999999999999999853
No 105
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=3.8e-12 Score=95.59 Aligned_cols=125 Identities=18% Similarity=0.207 Sum_probs=92.0
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---CCce----EEEcccCc-cCC-CCCEEEechhh
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---PGVK----HVGGDMFQ-SVP-NGDAILIKWIL 89 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~i~----~~~~d~~~-~~~-~~D~i~~~~~l 89 (184)
.++.+|||+|||+|-++.+.++.. ..+++++|+ |.+++.|+++ +++. ....+... +.. ..|+|+++-.-
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA 239 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA 239 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH
Confidence 488999999999999999888874 457999999 9999988875 5555 22222222 221 23999986533
Q ss_pred hcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeE
Q 030025 90 HDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIR 169 (184)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~ 169 (184)
+ -...+..++++.+||||+++++..... -.+.+.+.++++||..++
T Consensus 240 ~-----vl~~La~~~~~~lkpgg~lIlSGIl~~-----------------------------q~~~V~~a~~~~gf~v~~ 285 (300)
T COG2264 240 E-----VLVELAPDIKRLLKPGGRLILSGILED-----------------------------QAESVAEAYEQAGFEVVE 285 (300)
T ss_pred H-----HHHHHHHHHHHHcCCCceEEEEeehHh-----------------------------HHHHHHHHHHhCCCeEeE
Confidence 2 234889999999999999999774321 156778889999999998
Q ss_pred EEeecCceEE
Q 030025 170 FVCFFHNLWV 179 (184)
Q Consensus 170 ~~~~~~~~~~ 179 (184)
+........+
T Consensus 286 ~~~~~eW~~i 295 (300)
T COG2264 286 VLEREEWVAI 295 (300)
T ss_pred EEecCCEEEE
Confidence 8877544433
No 106
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.45 E-value=1.1e-12 Score=95.54 Aligned_cols=104 Identities=13% Similarity=0.189 Sum_probs=81.0
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCccC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSV 77 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~ 77 (184)
+-.+...++..+. ..+..+|||+|||+|..+..+++.. .+++++|. +.+++.++++ .++++..+|..+.+
T Consensus 63 ~p~~~~~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 139 (212)
T PRK00312 63 QPYMVARMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW 139 (212)
T ss_pred cHHHHHHHHHhcC-CCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC
Confidence 3445667777777 8888999999999999998877765 37999998 8888877653 46899999987633
Q ss_pred C---CCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 78 P---NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 78 ~---~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+ ..|+|++...++++ .+.+.+.|+|||++++.-.
T Consensus 140 ~~~~~fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 140 PAYAPFDRILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CcCCCcCEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 2 23999998876654 3457789999999998543
No 107
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.45 E-value=2.8e-12 Score=104.19 Aligned_cols=122 Identities=13% Similarity=0.196 Sum_probs=90.8
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCCC--CCEEEechhhh-
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVPN--GDAILIKWILH- 90 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~~--~D~i~~~~~l~- 90 (184)
..+|||+|||+|.++..+++.+|..+++++|+ +.+++.|+++ +++.++.+|+.+..+. .|+|+++-...
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 46899999999999999999999999999999 8899888764 3688999998774433 39999843211
Q ss_pred -------------cCC------h----HHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCC
Q 030025 91 -------------DWS------D----EHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPG 147 (184)
Q Consensus 91 -------------~~~------~----~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
|-+ . +-...+++.+.+.|+|||.+++ +...
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig~-------------------------- 271 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIGF-------------------------- 271 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE-EECC--------------------------
Confidence 100 0 1223577888999999999887 3211
Q ss_pred ccccCHHHHHHHHHHcCCceeEEEee
Q 030025 148 GKERTKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 148 ~~~~~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
...+.+.+++++.||..+++..-
T Consensus 272 ---~q~~~v~~~~~~~g~~~~~~~~D 294 (506)
T PRK01544 272 ---KQEEAVTQIFLDHGYNIESVYKD 294 (506)
T ss_pred ---chHHHHHHHHHhcCCCceEEEec
Confidence 03567788889999998877653
No 108
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.44 E-value=5.2e-12 Score=94.07 Aligned_cols=136 Identities=14% Similarity=0.133 Sum_probs=95.6
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---CCceEEEcccCccCC---
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---PGVKHVGGDMFQSVP--- 78 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~i~~~~~d~~~~~~--- 78 (184)
..+++.++..+...++..+|||+|||+|.++..+++..+..+++++|+ +.+++.++++ .+++++.+|+.+..+
T Consensus 71 e~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~ 150 (251)
T TIGR03704 71 EFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTAL 150 (251)
T ss_pred HHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhc
Confidence 445555555543123346899999999999999999988889999999 8999988765 457889999876332
Q ss_pred -CC-CEEEechhhh------cCChH------------------HHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCcccc
Q 030025 79 -NG-DAILIKWILH------DWSDE------------------HCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSK 132 (184)
Q Consensus 79 -~~-D~i~~~~~l~------~~~~~------------------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~ 132 (184)
.. |+|+++-... ..+++ -...+++.+.+.|+|||++++.-. . +
T Consensus 151 ~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~-~-~--------- 219 (251)
T TIGR03704 151 RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS-E-R--------- 219 (251)
T ss_pred CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-c-c---------
Confidence 23 9998864321 11111 123788888899999999987421 0 0
Q ss_pred chhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEE
Q 030025 133 INSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFV 171 (184)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~ 171 (184)
...++.+++++.||+..-..
T Consensus 220 -------------------~~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 220 -------------------QAPLAVEAFARAGLIARVAS 239 (251)
T ss_pred -------------------hHHHHHHHHHHCCCCceeeE
Confidence 24567888888998865443
No 109
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.44 E-value=3.7e-12 Score=90.28 Aligned_cols=136 Identities=18% Similarity=0.193 Sum_probs=89.6
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-cCCCC--CE
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-SVPNG--DA 82 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~~~--D~ 82 (184)
.=++.+++.+...++...|.|+|||.+.++..+.. ..++..+|+ +. .+ .+...|+.+ |+++. |+
T Consensus 58 nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~-------n~--~Vtacdia~vPL~~~svDv 125 (219)
T PF05148_consen 58 NPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP-------NP--RVTACDIANVPLEDESVDV 125 (219)
T ss_dssp -HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S-------ST--TEEES-TTS-S--TT-EEE
T ss_pred CcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC-------CC--CEEEecCccCcCCCCceeE
Confidence 33567788887455567999999999999966543 357899996 21 12 466788877 88766 99
Q ss_pred EEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHH
Q 030025 83 ILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATE 162 (184)
Q Consensus 83 i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (184)
++++.+|.-- +...+++++.|+|||||.|.|+|... +.-+.+++.+.++.
T Consensus 126 ~VfcLSLMGT---n~~~fi~EA~RvLK~~G~L~IAEV~S---------------------------Rf~~~~~F~~~~~~ 175 (219)
T PF05148_consen 126 AVFCLSLMGT---NWPDFIREANRVLKPGGILKIAEVKS---------------------------RFENVKQFIKALKK 175 (219)
T ss_dssp EEEES---SS----HHHHHHHHHHHEEEEEEEEEEEEGG---------------------------G-S-HHHHHHHHHC
T ss_pred EEEEhhhhCC---CcHHHHHHHHheeccCcEEEEEEecc---------------------------cCcCHHHHHHHHHH
Confidence 9998888743 33579999999999999999988531 22257889999999
Q ss_pred cCCceeEEEeecCceEEEEEeC
Q 030025 163 AGFSGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 163 aGf~~i~~~~~~~~~~~~~~~~ 184 (184)
.||+..........+.+.++.|
T Consensus 176 ~GF~~~~~d~~n~~F~~f~F~K 197 (219)
T PF05148_consen 176 LGFKLKSKDESNKHFVLFEFKK 197 (219)
T ss_dssp TTEEEEEEE--STTEEEEEEEE
T ss_pred CCCeEEecccCCCeEEEEEEEE
Confidence 9999988766667777777664
No 110
>PRK04457 spermidine synthase; Provisional
Probab=99.44 E-value=8.5e-13 Score=98.84 Aligned_cols=108 Identities=15% Similarity=0.225 Sum_probs=81.2
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc---cC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ---SV 77 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~---~~ 77 (184)
.+.|...+.-.+++.+|||||||+|.++..+++.+|..+++++|+ +.+++.|+++ ++++++.+|..+ ..
T Consensus 54 ~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~ 133 (262)
T PRK04457 54 TRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH 133 (262)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC
Confidence 344444333134678999999999999999999999999999999 9999988763 578999999865 22
Q ss_pred CC-CCEEEechhhhc--CCh-HHHHHHHHHHHhhCCCCcEEEEE
Q 030025 78 PN-GDAILIKWILHD--WSD-EHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 78 ~~-~D~i~~~~~l~~--~~~-~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
+. +|+|++.. ++. .+. -...++++++++.|+|||++++.
T Consensus 134 ~~~yD~I~~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 134 RHSTDVILVDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCCCEEEEeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 33 39998753 221 111 11248999999999999999984
No 111
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.43 E-value=1.9e-11 Score=90.59 Aligned_cols=156 Identities=15% Similarity=0.223 Sum_probs=109.3
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCC--CeEEEeec-hhHhhhCCC------CCCc-eEEEcccCc--cC---CCC-CE
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPH--IKGINFDL-PHVIQHSPE------YPGV-KHVGGDMFQ--SV---PNG-DA 82 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~--~~~~~~D~-~~~~~~a~~------~~~i-~~~~~d~~~--~~---~~~-D~ 82 (184)
-..+-+||||+||.|.+....+..+|. ..+...|. +.-++..++ ..++ +|.++|+++ .+ ... ++
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 457789999999999999999999886 78888998 666555544 2555 999999997 22 223 99
Q ss_pred EEechhhhcCChHHHH-HHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCC---c-cccCHHHHH
Q 030025 83 ILIKWILHDWSDEHCL-KLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPG---G-KERTKHEFT 157 (184)
Q Consensus 83 i~~~~~l~~~~~~~~~-~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~ 157 (184)
++++..++.|+|.+.+ ..++.+.+++.|||+|+.+..-+.. ... +..-....|..+ . +.+|..|+.
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHP--------Qle-~IAr~LtsHr~g~~WvMRrRsq~EmD 283 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHP--------QLE-MIARVLTSHRDGKAWVMRRRSQAEMD 283 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCc--------chH-HHHHHHhcccCCCceEEEecCHHHHH
Confidence 9999999999986644 4799999999999999986532211 110 111111111111 1 356999999
Q ss_pred HHHHHcCCceeEEEee-cCceEEEEEe
Q 030025 158 TLATEAGFSGIRFVCF-FHNLWVMEFY 183 (184)
Q Consensus 158 ~~l~~aGf~~i~~~~~-~~~~~~~~~~ 183 (184)
+++++|||+.++.+.- .+.+.+--|.
T Consensus 284 ~Lv~~aGF~K~~q~ID~~GIFTVSlA~ 310 (311)
T PF12147_consen 284 QLVEAAGFEKIDQRIDEWGIFTVSLAR 310 (311)
T ss_pred HHHHHcCCchhhheeccCCceEEEeec
Confidence 9999999997765543 3455554443
No 112
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.43 E-value=1.1e-11 Score=90.62 Aligned_cols=160 Identities=18% Similarity=0.185 Sum_probs=102.3
Q ss_pred CCcccHHhHHHHHHHhc----CCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc
Q 030025 1 MYNHTTLVLQKILEAYK----GFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ 75 (184)
Q Consensus 1 ~~~~~~~~~~~l~~~~~----~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~ 75 (184)
|.-+|..-.++++..-. .-.+..++||||+|.|..+..++..+.. +.+.+. +.|..+.+++ +.+.+..|-+.
T Consensus 70 MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~k-g~~vl~~~~w~ 146 (265)
T PF05219_consen 70 MFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSKK-GFTVLDIDDWQ 146 (265)
T ss_pred EEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHhC-CCeEEehhhhh
Confidence 33455666666666441 0225678999999999999999999875 455566 6787666553 45555444443
Q ss_pred cCCC-CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec--CCCCC-----CCccccchhhhhhHhhhhCCC
Q 030025 76 SVPN-GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL--PELPE-----NGTHSKINSLADVLVMTQYPG 147 (184)
Q Consensus 76 ~~~~-~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 147 (184)
.-+. .|+|.|.+++..-..| ..+|+++++.|+|+|+++++--.. +.... .++.+. .++ ...
T Consensus 147 ~~~~~fDvIscLNvLDRc~~P--~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~----l~~-----~g~ 215 (265)
T PF05219_consen 147 QTDFKFDVISCLNVLDRCDRP--LTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSEL----LPV-----KGA 215 (265)
T ss_pred ccCCceEEEeehhhhhccCCH--HHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhh----cCC-----CCC
Confidence 2222 3999999999987666 479999999999999999864321 21111 111111 110 000
Q ss_pred ccccCHHHHHHHHHHcCCceeEEEeec
Q 030025 148 GKERTKHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 148 ~~~~~~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
.-.-....+.+.|+.+||+++..-+.+
T Consensus 216 ~~E~~v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 216 TFEEQVSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred cHHHHHHHHHHHHHhcCCEEEEEeccC
Confidence 111134555589999999999886654
No 113
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.9e-12 Score=92.15 Aligned_cols=103 Identities=11% Similarity=0.235 Sum_probs=86.0
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCccCC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSVP 78 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~~ 78 (184)
-.+...|++.+. +++..+|||||||+|+.+--|++... +++.++. +...+.|+++ .|+.+.++|-..-++
T Consensus 58 P~~vA~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~ 134 (209)
T COG2518 58 PHMVARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP 134 (209)
T ss_pred cHHHHHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC
Confidence 356788999998 99999999999999999999988854 8899998 8888888774 679999999998544
Q ss_pred C---CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 79 N---GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 79 ~---~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
. +|.|++..+.-.+|.. +.+.|+|||++++-.-
T Consensus 135 ~~aPyD~I~Vtaaa~~vP~~--------Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 135 EEAPYDRIIVTAAAPEVPEA--------LLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCcCEEEEeeccCCCCHH--------HHHhcccCCEEEEEEc
Confidence 3 3999999888876643 5678999999999554
No 114
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.38 E-value=3.3e-12 Score=91.97 Aligned_cols=108 Identities=19% Similarity=0.239 Sum_probs=78.7
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEc-------ccCccC-
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGG-------DMFQSV- 77 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~-------d~~~~~- 77 (184)
.+.+.+...-. ..+.++|+|||+|..++-+++.+. +++++|+ +.|++.+++.+++.+... ++.+-.
T Consensus 22 dw~~~ia~~~~---~h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g 96 (261)
T KOG3010|consen 22 DWFKKIASRTE---GHRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG 96 (261)
T ss_pred HHHHHHHhhCC---CcceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccC
Confidence 34444444432 334899999999988888888765 6799999 999999999865544322 122212
Q ss_pred -CCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecC
Q 030025 78 -PNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLP 122 (184)
Q Consensus 78 -~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 122 (184)
++. |+|++..++|++.-+ ++++.++|+||+.|.++.......
T Consensus 97 ~e~SVDlI~~Aqa~HWFdle---~fy~~~~rvLRk~Gg~iavW~Y~d 140 (261)
T KOG3010|consen 97 GEESVDLITAAQAVHWFDLE---RFYKEAYRVLRKDGGLIAVWNYND 140 (261)
T ss_pred CCcceeeehhhhhHHhhchH---HHHHHHHHHcCCCCCEEEEEEccC
Confidence 234 999999999999765 689999999999997776655543
No 115
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=9.6e-12 Score=90.57 Aligned_cols=105 Identities=16% Similarity=0.255 Sum_probs=87.1
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhh-CCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cCC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSK-YPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~~ 78 (184)
+..|+..++ +.+..+|+|.|.|+|.++..|+.. .|..+++.+|. ++..+.|+++ +++.+..+|+.+ ..+
T Consensus 83 ~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 83 AGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 345677777 999999999999999999999975 68799999999 9999999875 459999999988 344
Q ss_pred CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 79 NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 79 ~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
+. |+|+. .+++| .+++..+.+.|+|||.+++..+..
T Consensus 162 ~~vDav~L-----Dmp~P--W~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 162 EDVDAVFL-----DLPDP--WNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred cccCEEEE-----cCCCh--HHHHHHHHHHhCCCcEEEEEcCCH
Confidence 44 99988 44555 488999999999999999966544
No 116
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.38 E-value=3.3e-12 Score=88.24 Aligned_cols=125 Identities=16% Similarity=0.163 Sum_probs=91.5
Q ss_pred CCCC-eEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------C-CceEEEcccCcc-C-CCC-CEEEech
Q 030025 20 EHIK-QLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------P-GVKHVGGDMFQS-V-PNG-DAILIKW 87 (184)
Q Consensus 20 ~~~~-~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~-~i~~~~~d~~~~-~-~~~-D~i~~~~ 87 (184)
++.. +|||+|||.|.++..|++.--....+|+|. +.+++.|+.. + .|+|++.|+.++ + +.. |+|.=-.
T Consensus 65 ~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKG 144 (227)
T KOG1271|consen 65 SKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKG 144 (227)
T ss_pred cccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecC
Confidence 3444 999999999999999999843456899999 7888877542 3 499999999983 3 222 7774433
Q ss_pred hhhcC------ChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHH
Q 030025 88 ILHDW------SDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLAT 161 (184)
Q Consensus 88 ~l~~~------~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (184)
++..+ +......-+..+.+.|+|||.++|..= -+|..++.+.++
T Consensus 145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC------------------------------N~T~dELv~~f~ 194 (227)
T KOG1271|consen 145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC------------------------------NFTKDELVEEFE 194 (227)
T ss_pred ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec------------------------------CccHHHHHHHHh
Confidence 33322 111223457888999999999999542 247899999999
Q ss_pred HcCCceeEEEeec
Q 030025 162 EAGFSGIRFVCFF 174 (184)
Q Consensus 162 ~aGf~~i~~~~~~ 174 (184)
.-||+....++.+
T Consensus 195 ~~~f~~~~tvp~p 207 (227)
T KOG1271|consen 195 NFNFEYLSTVPTP 207 (227)
T ss_pred cCCeEEEEeeccc
Confidence 9999988877764
No 117
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.37 E-value=1.2e-11 Score=93.46 Aligned_cols=128 Identities=16% Similarity=0.088 Sum_probs=89.1
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---CCc--eEEEcccCc-cCCCCCEEEechhhhcC
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---PGV--KHVGGDMFQ-SVPNGDAILIKWILHDW 92 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~i--~~~~~d~~~-~~~~~D~i~~~~~l~~~ 92 (184)
.+..+|||+|||||-++...++.. ..+++++|+ +.+++.|+++ +++ .+......+ ....+|+|+++-...
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~~~~dlvvANI~~~-- 236 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVEGKFDLVVANILAD-- 236 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCCS-EEEEEEES-HH--
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecccccccCCEEEECCCHH--
Confidence 456799999999999999877764 458999999 9999888775 221 222222122 112239998855443
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEe
Q 030025 93 SDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVC 172 (184)
Q Consensus 93 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~ 172 (184)
....+...+.+.|+|||+|+++...... .+++.+.+++ ||+.++...
T Consensus 237 ---vL~~l~~~~~~~l~~~G~lIlSGIl~~~-----------------------------~~~v~~a~~~-g~~~~~~~~ 283 (295)
T PF06325_consen 237 ---VLLELAPDIASLLKPGGYLILSGILEEQ-----------------------------EDEVIEAYKQ-GFELVEERE 283 (295)
T ss_dssp ---HHHHHHHHCHHHEEEEEEEEEEEEEGGG-----------------------------HHHHHHHHHT-TEEEEEEEE
T ss_pred ---HHHHHHHHHHHhhCCCCEEEEccccHHH-----------------------------HHHHHHHHHC-CCEEEEEEE
Confidence 3357889999999999999997765422 5677788877 999988887
Q ss_pred ecCceEEEEEe
Q 030025 173 FFHNLWVMEFY 183 (184)
Q Consensus 173 ~~~~~~~~~~~ 183 (184)
......+..-+
T Consensus 284 ~~~W~~l~~~K 294 (295)
T PF06325_consen 284 EGEWVALVFKK 294 (295)
T ss_dssp ETTEEEEEEEE
T ss_pred ECCEEEEEEEe
Confidence 76666655433
No 118
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.37 E-value=1.1e-12 Score=94.83 Aligned_cols=105 Identities=15% Similarity=0.278 Sum_probs=79.8
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC------CCceEEEcccCcc
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQS 76 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~ 76 (184)
+-.+...+++.+. +.+..+|||||||+|+.+..++... +..+++++|. +.+.+.|+++ .++.++.+|....
T Consensus 57 ~P~~~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g 135 (209)
T PF01135_consen 57 APSMVARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEG 135 (209)
T ss_dssp -HHHHHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGT
T ss_pred HHHHHHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhc
Confidence 3456788999998 9999999999999999999999884 4457899998 8888888764 5899999998874
Q ss_pred CCC---CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 77 VPN---GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 77 ~~~---~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
++. +|.|++......++ ..+.+.|++||+|++.-
T Consensus 136 ~~~~apfD~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 136 WPEEAPFDRIIVTAAVPEIP--------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp TGGG-SEEEEEESSBBSS----------HHHHHTEEEEEEEEEEE
T ss_pred cccCCCcCEEEEeeccchHH--------HHHHHhcCCCcEEEEEE
Confidence 432 39999988886543 23667789999999843
No 119
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.37 E-value=1.1e-11 Score=89.34 Aligned_cols=143 Identities=17% Similarity=0.244 Sum_probs=91.7
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----------C----------------------
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----------P---------------------- 64 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----------~---------------------- 64 (184)
+-....+|||||.+|.++..+++.+....++|+|+ +..++.|+++ .
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 44668999999999999999999998889999999 8899998774 1
Q ss_pred --------CceE-------EEcccCc-cCCCCCEEEechh----hhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCC
Q 030025 65 --------GVKH-------VGGDMFQ-SVPNGDAILIKWI----LHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPEL 124 (184)
Q Consensus 65 --------~i~~-------~~~d~~~-~~~~~D~i~~~~~----l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 124 (184)
++.| ...|+.+ ..+..|+|+|..+ --+|.|+-...+|+++.++|.|||+|++.-.-+..
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWks- 214 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKS- 214 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHH-
Confidence 1111 2222222 1233489977543 33367888889999999999999999882111111
Q ss_pred CCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHc--CCceeE
Q 030025 125 PENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEA--GFSGIR 169 (184)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a--Gf~~i~ 169 (184)
......... ........-...++.+..++.+. ||+..+
T Consensus 215 -----Y~kaar~~e--~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 215 -----YKKAARRSE--KLAANYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred -----HHHHHHHHH--HhhcCccceecCHHHHHhhhhhhhhheeeec
Confidence 000000110 11111122345788899998887 555443
No 120
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=3.5e-11 Score=90.84 Aligned_cols=121 Identities=20% Similarity=0.277 Sum_probs=89.2
Q ss_pred eEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCccCCCC-CEEEechhh-----h
Q 030025 24 QLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSVPNG-DAILIKWIL-----H 90 (184)
Q Consensus 24 ~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~~~~-D~i~~~~~l-----~ 90 (184)
+|||+|||+|..+..++...|.++++++|+ +.+++.|+++ .++.++..|.+++.... |+|+++=.. .
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999999 9999988765 33566677888755544 999874211 0
Q ss_pred cCC------------------hHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccC
Q 030025 91 DWS------------------DEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERT 152 (184)
Q Consensus 91 ~~~------------------~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
+.. -+-...+++++.+.|+|||.+++..- . -.
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g-~-----------------------------~q 242 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG-L-----------------------------TQ 242 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC-C-----------------------------Cc
Confidence 000 12345788889999999888887321 0 13
Q ss_pred HHHHHHHHHHcC-CceeEEEeec
Q 030025 153 KHEFTTLATEAG-FSGIRFVCFF 174 (184)
Q Consensus 153 ~~~~~~~l~~aG-f~~i~~~~~~ 174 (184)
.+.+.++|++.| |..+...+-.
T Consensus 243 ~~~v~~~~~~~~~~~~v~~~~d~ 265 (280)
T COG2890 243 GEAVKALFEDTGFFEIVETLKDL 265 (280)
T ss_pred HHHHHHHHHhcCCceEEEEEecC
Confidence 677889999999 6666666543
No 121
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.36 E-value=9e-12 Score=95.52 Aligned_cols=104 Identities=17% Similarity=0.265 Sum_probs=80.1
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCC-CeEEEeec-hhHhhhCCCC------CCceEEEcccCccC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPH-IKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSV 77 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~ 77 (184)
..+...+++.+. .++..+|||+|||+|.++..+++..+. ..++++|. +.+++.|++. .++.++.+|..+..
T Consensus 66 p~l~a~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~ 144 (322)
T PRK13943 66 PSLMALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcc
Confidence 445667777777 778899999999999999999988753 57999999 8888877652 57899999987632
Q ss_pred C---CCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 78 P---NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 78 ~---~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+ ..|+|++...+.++ ...+.+.|+|||++++..
T Consensus 145 ~~~~~fD~Ii~~~g~~~i--------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 145 PEFAPYDVIFVTVGVDEV--------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cccCCccEEEECCchHHh--------HHHHHHhcCCCCEEEEEe
Confidence 2 23999997666543 234677899999998854
No 122
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.36 E-value=1.7e-12 Score=85.61 Aligned_cols=96 Identities=19% Similarity=0.305 Sum_probs=76.4
Q ss_pred CeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-c--CCCC--CEEEechhh
Q 030025 23 KQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-S--VPNG--DAILIKWIL 89 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~--~~~~--D~i~~~~~l 89 (184)
.+|||+|||+|.++..+++.. ..+++++|+ +..++.++.. .+++++.+|+.+ . .+.. |+|+++-.+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 789999999 8888877653 568999999987 3 4333 999998777
Q ss_pred hcCC------hHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 90 HDWS------DEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 90 ~~~~------~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.... .+....+++++.++|+|||.+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 6432 11345889999999999999998653
No 123
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.35 E-value=4e-11 Score=87.31 Aligned_cols=101 Identities=9% Similarity=-0.035 Sum_probs=84.7
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC------------------CCCceEEEcccCc-cCC
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE------------------YPGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------------------~~~i~~~~~d~~~-~~~ 78 (184)
.++.++||+.|||.|.-+..|++. +.+++|+|+ +..++.+.+ ..+++++++|+++ +.+
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~ 118 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI 118 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc
Confidence 445689999999999999999997 568999999 777776422 1478999999998 321
Q ss_pred -----CCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 79 -----NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 79 -----~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
..|+|+-..++++++++...+..+.+.++|+|||.+++.....
T Consensus 119 ~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 2399999999999999988999999999999999999987644
No 124
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.35 E-value=1.1e-11 Score=79.08 Aligned_cols=92 Identities=21% Similarity=0.320 Sum_probs=74.5
Q ss_pred eEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCC------CCCCceEEEcccCccC---CCC-CEEEechhhhcC
Q 030025 24 QLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSP------EYPGVKHVGGDMFQSV---PNG-DAILIKWILHDW 92 (184)
Q Consensus 24 ~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~------~~~~i~~~~~d~~~~~---~~~-D~i~~~~~l~~~ 92 (184)
+|+|+|||+|..+..+++ .+..+++++|. +.+.+.++ ...++.++..|..+.. +.. |+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999988 56789999998 76766554 1267899999998732 233 999999999874
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 93 SDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 93 ~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
.+....+++.+.+.++|||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 345568999999999999999885
No 125
>PRK00811 spermidine synthase; Provisional
Probab=99.34 E-value=6.2e-12 Score=95.24 Aligned_cols=109 Identities=21% Similarity=0.296 Sum_probs=80.2
Q ss_pred HHHHHHHhcC--CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----------CCceEEEcccC
Q 030025 9 LQKILEAYKG--FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----------PGVKHVGGDMF 74 (184)
Q Consensus 9 ~~~l~~~~~~--~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----------~~i~~~~~d~~ 74 (184)
..+++.+.+. -+.+++||+||||+|..+..+++..+..+++++|+ +.+++.|+++ ++++++.+|..
T Consensus 62 Y~e~l~h~~~~~~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~ 141 (283)
T PRK00811 62 YHEMMTHVPLFAHPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGI 141 (283)
T ss_pred HHHHhhhHHHhhCCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchH
Confidence 4445554442 24678999999999999999998655678999999 9999888763 57899999987
Q ss_pred ccC---CC-CCEEEechhhhcCChH--HHHHHHHHHHhhCCCCcEEEEE
Q 030025 75 QSV---PN-GDAILIKWILHDWSDE--HCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 75 ~~~---~~-~D~i~~~~~l~~~~~~--~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
+.. +. .|+|++...-..-+.. -..++++.+++.|+|||.+++.
T Consensus 142 ~~l~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 142 KFVAETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred HHHhhCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 622 22 3999986543322211 1247899999999999998873
No 126
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.33 E-value=1.2e-11 Score=89.98 Aligned_cols=142 Identities=17% Similarity=0.170 Sum_probs=102.5
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC--C----------------CCceEE
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE--Y----------------PGVKHV 69 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~--~----------------~~i~~~ 69 (184)
..+.++.+. .++..+||..|||.|.-...|+++ +.+++|+|+ +.+++.+.+ . .+|++.
T Consensus 26 L~~~~~~l~-~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~ 102 (218)
T PF05724_consen 26 LVEYLDSLA-LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIY 102 (218)
T ss_dssp HHHHHHHHT-TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEE
T ss_pred HHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEE
Confidence 444555555 777889999999999999999997 569999999 778877511 1 357899
Q ss_pred EcccCc-cCCC---CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhC
Q 030025 70 GGDMFQ-SVPN---GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQY 145 (184)
Q Consensus 70 ~~d~~~-~~~~---~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (184)
++|+++ +... .|+|+=..+++-++++.+.+-.+.+.++|+|||.+++.....+.... .
T Consensus 103 ~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~------------------~ 164 (218)
T PF05724_consen 103 CGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM------------------E 164 (218)
T ss_dssp ES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS------------------S
T ss_pred EcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC------------------C
Confidence 999998 3222 29999999999999888889999999999999996665554432210 0
Q ss_pred CCccccCHHHHHHHHHHcCCceeEEEe
Q 030025 146 PGGKERTKHEFTTLATEAGFSGIRFVC 172 (184)
Q Consensus 146 ~~~~~~~~~~~~~~l~~aGf~~i~~~~ 172 (184)
......+.+++.++|. .+|++..+..
T Consensus 165 GPPf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 165 GPPFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp SSS----HHHHHHHHT-TTEEEEEEEE
T ss_pred CcCCCCCHHHHHHHhc-CCcEEEEEec
Confidence 0111237899999999 7888776553
No 127
>PLN02366 spermidine synthase
Probab=99.33 E-value=1.9e-11 Score=93.33 Aligned_cols=112 Identities=19% Similarity=0.202 Sum_probs=82.5
Q ss_pred HHhHHHHHHHhcC--CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEcc
Q 030025 6 TLVLQKILEAYKG--FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGD 72 (184)
Q Consensus 6 ~~~~~~l~~~~~~--~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d 72 (184)
.....+++.+++. .+++++||+||||.|..++.+++..+..+++.+|+ +.+++.++++ ++++++.+|
T Consensus 74 e~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~D 153 (308)
T PLN02366 74 ECAYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGD 153 (308)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEECh
Confidence 3456677777651 26789999999999999999987644468999999 8888888763 579999999
Q ss_pred cCc---cC-CC-CCEEEechhhhcCChH--HHHHHHHHHHhhCCCCcEEEEE
Q 030025 73 MFQ---SV-PN-GDAILIKWILHDWSDE--HCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 73 ~~~---~~-~~-~D~i~~~~~l~~~~~~--~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
... .. +. .|+|++...-.+-+.. -..++++.+++.|+|||.++..
T Consensus 154 a~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 154 GVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred HHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 864 22 22 3999986543322211 1347899999999999999763
No 128
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.31 E-value=3.8e-11 Score=81.84 Aligned_cols=116 Identities=20% Similarity=0.352 Sum_probs=99.4
Q ss_pred ccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhh-CCCCeEEEeec-hhHhhhCCC-CCCceEEEcccCc-c--C
Q 030025 4 HTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSK-YPHIKGINFDL-PHVIQHSPE-YPGVKHVGGDMFQ-S--V 77 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~--~ 77 (184)
+|..++++|.+... +.....|||+|.|||-++++++++ .+....+.++. +++....++ ++.++++.+|+.+ . .
T Consensus 32 sSs~lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l 110 (194)
T COG3963 32 SSSILARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTL 110 (194)
T ss_pred CcHHHHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHH
Confidence 57888999999998 888899999999999999999998 56778889988 777766554 5999999999986 2 2
Q ss_pred ---CCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 78 ---PNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 78 ---~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
... |.|+|...+-.++.....++++++...|++||.++.....
T Consensus 111 ~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 111 GEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred hhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 222 9999999999999888899999999999999999986654
No 129
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.30 E-value=1e-10 Score=85.13 Aligned_cols=133 Identities=19% Similarity=0.203 Sum_probs=98.7
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCc-cCCCC--CEEEe
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQ-SVPNG--DAILI 85 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~~~~~--D~i~~ 85 (184)
++.|+..+..-+....|.|+|||-+.++. .. .-.+..+|+-. .+=+++..|+.+ |+++. |++++
T Consensus 168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~a--------~~~~V~~cDm~~vPl~d~svDvaV~ 234 (325)
T KOG3045|consen 168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS---SE--RHKVHSFDLVA--------VNERVIACDMRNVPLEDESVDVAVF 234 (325)
T ss_pred HHHHHHHHHhCcCceEEEecccchhhhhh---cc--ccceeeeeeec--------CCCceeeccccCCcCccCcccEEEe
Confidence 55677777755677899999999998875 11 23678888611 244567788888 76654 99988
Q ss_pred chhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCC
Q 030025 86 KWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGF 165 (184)
Q Consensus 86 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 165 (184)
+.++.- . +...++++++|+|+|||.|+|+|.. +++-+...+.+.|...||
T Consensus 235 CLSLMg--t-n~~df~kEa~RiLk~gG~l~IAEv~---------------------------SRf~dv~~f~r~l~~lGF 284 (325)
T KOG3045|consen 235 CLSLMG--T-NLADFIKEANRILKPGGLLYIAEVK---------------------------SRFSDVKGFVRALTKLGF 284 (325)
T ss_pred eHhhhc--c-cHHHHHHHHHHHhccCceEEEEehh---------------------------hhcccHHHHHHHHHHcCC
Confidence 777763 2 3358999999999999999998842 222356778999999999
Q ss_pred ceeEEEeecCceEEEEEeC
Q 030025 166 SGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 166 ~~i~~~~~~~~~~~~~~~~ 184 (184)
......-...++.+.++.|
T Consensus 285 ~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 285 DVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred eeeehhhhcceEEEEEEec
Confidence 9887777777887777654
No 130
>PRK03612 spermidine synthase; Provisional
Probab=99.29 E-value=6.5e-11 Score=96.70 Aligned_cols=99 Identities=16% Similarity=0.229 Sum_probs=75.5
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------------CCceEEEcccCcc---CCCC-C
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------------PGVKHVGGDMFQS---VPNG-D 81 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------------~~i~~~~~d~~~~---~~~~-D 81 (184)
+++++|||||||+|..++.+++..+..+++.+|+ +++++.++++ ++++++.+|..+. .++. |
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4678999999999999999987433379999999 9999998872 5789999998862 2333 9
Q ss_pred EEEechhhhcCChH---HHHHHHHHHHhhCCCCcEEEEEe
Q 030025 82 AILIKWILHDWSDE---HCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 82 ~i~~~~~l~~~~~~---~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+|++...-...+.. -..++++.+++.|+|||.+++..
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 99997543221111 12368999999999999998853
No 131
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.27 E-value=2.3e-11 Score=85.48 Aligned_cols=102 Identities=13% Similarity=0.232 Sum_probs=75.8
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEcccCc-cCCC--C
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQ-SVPN--G 80 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~-~~~~--~ 80 (184)
.+.+++.+. ..+..+|||+|||+|.++..++++ ..+++++|. +.+++.++++ ++++++.+|+.+ +.+. .
T Consensus 2 ~~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 2 IDKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCC
Confidence 567888887 788889999999999999999998 468999999 8888877654 579999999988 5554 2
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhh--CCCCcEEEEEe
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKS--IPEGGKVIVVE 118 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~--L~pgG~l~i~~ 118 (184)
|.|+++..+ ++..+ ++.++.+. +.++|.+++..
T Consensus 79 d~vi~n~Py-~~~~~----~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 79 YKVVGNLPY-NISTP----ILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred CEEEECCCc-ccHHH----HHHHHHhcCCCcceEEEEEEH
Confidence 888876554 44433 34444332 34777776643
No 132
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.27 E-value=3.5e-11 Score=90.65 Aligned_cols=110 Identities=19% Similarity=0.235 Sum_probs=79.5
Q ss_pred hHHHHHHHhcC--CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEcccC
Q 030025 8 VLQKILEAYKG--FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGDMF 74 (184)
Q Consensus 8 ~~~~l~~~~~~--~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d~~ 74 (184)
...+++.+++. -+.+++||+||||+|..+..+++..+..+++.+|+ +.+++.++++ ++++++..|..
T Consensus 57 ~y~e~l~~~~l~~~~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~ 136 (270)
T TIGR00417 57 IYHEMIAHVPLFTHPNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGF 136 (270)
T ss_pred HHHHHhhhhHhhcCCCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchH
Confidence 34555555441 24567999999999999999988765678999999 8888877653 46888888876
Q ss_pred cc---CCC-CCEEEechhhhcCChHH--HHHHHHHHHhhCCCCcEEEEE
Q 030025 75 QS---VPN-GDAILIKWILHDWSDEH--CLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 75 ~~---~~~-~D~i~~~~~l~~~~~~~--~~~~l~~~~~~L~pgG~l~i~ 117 (184)
+. .+. .|+|++......-+... ..++++.+++.|+|||.+++.
T Consensus 137 ~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 137 KFLADTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred HHHHhCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 51 122 39999865532212211 347899999999999999985
No 133
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=99.26 E-value=2.7e-11 Score=89.47 Aligned_cols=157 Identities=17% Similarity=0.317 Sum_probs=94.9
Q ss_pred ccHHhHHHHHHHhcCCC-CCCeEEEecCC--cChHHHHHHhh-CCCCeEEEeec-hhHhhhCCCC----CC--ceEEEcc
Q 030025 4 HTTLVLQKILEAYKGFE-HIKQLVDVGGS--LGNTLKAITSK-YPHIKGINFDL-PHVIQHSPEY----PG--VKHVGGD 72 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~-~~~~ilDiG~G--~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~~----~~--i~~~~~d 72 (184)
.++.+.......+. -. .....|||||| |-.++-.++++ .|.++++.+|. |..+..++.. ++ ..++++|
T Consensus 51 ~nR~Fl~RaVr~la-~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD 129 (267)
T PF04672_consen 51 ANRAFLRRAVRYLA-EEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQAD 129 (267)
T ss_dssp HHHHHHHHHHHHHH-CTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--
T ss_pred HHHHHHHHHHHHHH-HhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCC
Confidence 45666777777777 45 78999999999 44566666666 89999999999 8888877653 55 8999999
Q ss_pred cCcc---CC--C--------C-CEEEechhhhcCCh-HHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhh
Q 030025 73 MFQS---VP--N--------G-DAILIKWILHDWSD-EHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLA 137 (184)
Q Consensus 73 ~~~~---~~--~--------~-D~i~~~~~l~~~~~-~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~ 137 (184)
+.++ +. . . =.+++..++||+++ ++...+++.++..|.||++|+|+....+... .......
T Consensus 130 ~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p-----~~~~~~~ 204 (267)
T PF04672_consen 130 LRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP-----ERAEALE 204 (267)
T ss_dssp TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH-----HHHHHHH
T ss_pred CCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH-----HHHHHHH
Confidence 9973 22 1 1 36788899999976 5677999999999999999999887553211 1111122
Q ss_pred hhHhhhhCCCccccCHHHHHHHHHHcCCceeE
Q 030025 138 DVLVMTQYPGGKERTKHEFTTLATEAGFSGIR 169 (184)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~ 169 (184)
..+... ......+|.+++..+|. ||+.++
T Consensus 205 ~~~~~~-~~~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 205 AVYAQA-GSPGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp HHHHHC-CS----B-HHHHHHCCT--TSEE-T
T ss_pred HHHHcC-CCCceecCHHHHHHHcC--CCccCC
Confidence 222222 23456789999999998 888664
No 134
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.25 E-value=6.3e-11 Score=84.33 Aligned_cols=109 Identities=14% Similarity=0.220 Sum_probs=81.9
Q ss_pred cHHhHHHHHHHhcCCCC--CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-CCceEEEcccCc--cCC
Q 030025 5 TTLVLQKILEAYKGFEH--IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQ--SVP 78 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~--~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~--~~~ 78 (184)
+..++...++.+. ++. ..-|||||||+|-.+..+.+. +-..+|+|+ +.|++.|.+. -.-.+...|+=. |+.
T Consensus 33 Q~em~eRaLELLa-lp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~Glpfr 109 (270)
T KOG1541|consen 33 QAEMAERALELLA-LPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFR 109 (270)
T ss_pred hHHHHHHHHHHhh-CCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCC
Confidence 3445556666666 665 788999999999998877665 468899999 9999998763 224677788866 555
Q ss_pred CC--CEEEechhhhcC---------ChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 79 NG--DAILIKWILHDW---------SDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 79 ~~--D~i~~~~~l~~~---------~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
.+ |.+|+..+++++ +......+|..++.+|++|++-++
T Consensus 110 pGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~ 158 (270)
T KOG1541|consen 110 PGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL 158 (270)
T ss_pred CCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE
Confidence 54 988887777654 334445788999999999999888
No 135
>PRK01581 speE spermidine synthase; Validated
Probab=99.25 E-value=4.5e-11 Score=92.09 Aligned_cols=99 Identities=17% Similarity=0.096 Sum_probs=75.9
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC-------------CCCceEEEcccCcc---CCC-C
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE-------------YPGVKHVGGDMFQS---VPN-G 80 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-------------~~~i~~~~~d~~~~---~~~-~ 80 (184)
.+.+++||+||||+|..++.+++..+..+++.+|+ +.+++.|++ .++++++.+|..+. .+. .
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 35678999999999999999998666679999999 999998885 16899999999872 122 3
Q ss_pred CEEEechhhh---cCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 81 DAILIKWILH---DWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 81 D~i~~~~~l~---~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
|+|++...-. ....--..++++.+++.|+|||.+++.
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9999874211 011112247899999999999998885
No 136
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.24 E-value=1.5e-10 Score=92.62 Aligned_cols=112 Identities=14% Similarity=0.147 Sum_probs=82.1
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCcc---CC
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQS---VP 78 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~~---~~ 78 (184)
....+...+. ..+..+|||+|||+|..+..+++..+..+++++|. +.+++.++++ .++.++.+|+.+. .+
T Consensus 232 ~s~~~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~ 310 (427)
T PRK10901 232 AAQLAATLLA-PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWD 310 (427)
T ss_pred HHHHHHHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcc
Confidence 3445555666 67889999999999999999999987689999999 8888887664 2468889998762 22
Q ss_pred -C-CCEEEechh------hhc-------CChH-------HHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 79 -N-GDAILIKWI------LHD-------WSDE-------HCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 79 -~-~D~i~~~~~------l~~-------~~~~-------~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
. .|.|++.-. +.+ .... ....+++.+.+.|||||++++++-.
T Consensus 311 ~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 311 GQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred cCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 2 399985321 111 1111 1237899999999999999987743
No 137
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.23 E-value=8.1e-11 Score=86.86 Aligned_cols=129 Identities=15% Similarity=0.283 Sum_probs=95.1
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhh-CCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cCC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSK-YPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~~ 78 (184)
+..|+..+. +.+..+|||.|.|+|.++..++.. .|..++..+|. ++..+.|+++ .++.+...|+.+ .++
T Consensus 29 ~~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 29 ISYILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFD 107 (247)
T ss_dssp HHHHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--S
T ss_pred HHHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccc
Confidence 456777887 999999999999999999999987 68899999999 8888888764 579999999975 332
Q ss_pred ----CC-CEEEechhhhcCChHHHHHHHHHHHhhC-CCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccC
Q 030025 79 ----NG-DAILIKWILHDWSDEHCLKLLKNCHKSI-PEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERT 152 (184)
Q Consensus 79 ----~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L-~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
.. |.|+. .+++|. ..+..+.+.| +|||++++..+..+.
T Consensus 108 ~~~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~gG~i~~fsP~ieQ----------------------------- 151 (247)
T PF08704_consen 108 EELESDFDAVFL-----DLPDPW--EAIPHAKRALKKPGGRICCFSPCIEQ----------------------------- 151 (247)
T ss_dssp TT-TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EEEEEEEEEESSHHH-----------------------------
T ss_pred ccccCcccEEEE-----eCCCHH--HHHHHHHHHHhcCCceEEEECCCHHH-----------------------------
Confidence 23 88887 445553 6799999999 899999996654322
Q ss_pred HHHHHHHHHHcCCceeEEEeec
Q 030025 153 KHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 153 ~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
.....+.|++.||..+++....
T Consensus 152 v~~~~~~L~~~gf~~i~~~Evl 173 (247)
T PF08704_consen 152 VQKTVEALREHGFTDIETVEVL 173 (247)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHHHCCCeeeEEEEEE
Confidence 2344567788999999887654
No 138
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.21 E-value=3.6e-11 Score=86.00 Aligned_cols=99 Identities=17% Similarity=0.269 Sum_probs=69.9
Q ss_pred CCCCeEEEecCCcCh--HHHHHH--hh----CC-CCeEEEeec-hhHhhhCCCC--------------------------
Q 030025 20 EHIKQLVDVGGSLGN--TLKAIT--SK----YP-HIKGINFDL-PHVIQHSPEY-------------------------- 63 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~--~~~~l~--~~----~~-~~~~~~~D~-~~~~~~a~~~-------------------------- 63 (184)
.+.-+|+-.||+||. ++.+|+ +. .+ ..++++.|+ +.+++.|++-
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 356799999999994 333333 31 12 479999999 8888888541
Q ss_pred --------CCceEEEcccCc-cCC-CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 64 --------PGVKHVGGDMFQ-SVP-NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 64 --------~~i~~~~~d~~~-~~~-~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
.+|.|...|+.+ +.+ .. |+|+|.+++-++.++...++++++.+.|+|||+|++..
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 359999999988 322 33 99999999999999988999999999999999999954
No 139
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.21 E-value=1.7e-10 Score=92.33 Aligned_cols=114 Identities=17% Similarity=0.195 Sum_probs=82.7
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---CC----ceEEEcccCc-cC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---PG----VKHVGGDMFQ-SV 77 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~----i~~~~~d~~~-~~ 77 (184)
.-...+...+. ..++.+|||+|||+|..+..+++..+..+++++|. +.+++.++++ .+ +.+..+|..+ +.
T Consensus 225 ~~s~~~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~ 303 (426)
T TIGR00563 225 ASAQWVATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ 303 (426)
T ss_pred HHHHHHHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc
Confidence 33455566666 77789999999999999999999887789999999 8888877654 22 2335666654 21
Q ss_pred --C-C-CCEEEe------chhhhcCChH--------------HHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 78 --P-N-GDAILI------KWILHDWSDE--------------HCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 78 --~-~-~D~i~~------~~~l~~~~~~--------------~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
+ . .|.|++ .+++++.++- ...++|+++.+.|||||+|+.++-..
T Consensus 304 ~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 304 WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 2 2 299985 2355544321 12479999999999999999987554
No 140
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.20 E-value=2.4e-10 Score=84.29 Aligned_cols=99 Identities=12% Similarity=0.178 Sum_probs=77.2
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc---C------CCC
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS---V------PNG 80 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~---~------~~~ 80 (184)
..+.++|||+|||+|+.+..++... +..+++++|. +.+++.|+++ ++++++.+|+.+. + +..
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 4568999999999999999999875 4689999999 8888888764 5689999999762 1 123
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecC
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLP 122 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 122 (184)
|+|++... .+.....+..+.+.|+|||.+++-+..+.
T Consensus 146 D~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~dn~l~~ 182 (234)
T PLN02781 146 DFAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAFDNTLWF 182 (234)
T ss_pred CEEEECCC-----HHHHHHHHHHHHHhcCCCeEEEEEcCCcC
Confidence 99988432 23445789999999999999887655443
No 141
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=99.20 E-value=4.4e-10 Score=86.00 Aligned_cols=106 Identities=10% Similarity=0.149 Sum_probs=80.2
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC----CCCeEEEeec-hhHhhhCCC------CCCceE--EEcccCc
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY----PHIKGINFDL-PHVIQHSPE------YPGVKH--VGGDMFQ 75 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~----~~~~~~~~D~-~~~~~~a~~------~~~i~~--~~~d~~~ 75 (184)
..+|...++ +...|+|+|||+|.-+..+++.. +.++++.+|+ ..+++.+.+ .|.+.+ +++|+.+
T Consensus 67 ~~~Ia~~i~---~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 67 SSDIAASIP---SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD 143 (319)
T ss_pred HHHHHHhcC---CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence 445555543 55689999999999988887765 3578999999 667765533 366655 8888876
Q ss_pred c---CC-----CC-CEE-EechhhhcCChHHHHHHHHHHHh-hCCCCcEEEEE
Q 030025 76 S---VP-----NG-DAI-LIKWILHDWSDEHCLKLLKNCHK-SIPEGGKVIVV 117 (184)
Q Consensus 76 ~---~~-----~~-D~i-~~~~~l~~~~~~~~~~~l~~~~~-~L~pgG~l~i~ 117 (184)
. ++ .. .++ +..+++.+++++++..+|+++++ .|+|||.|++.
T Consensus 144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 2 22 22 555 55679999999999999999999 99999999884
No 142
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.18 E-value=2.6e-10 Score=91.69 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=80.4
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC------CCceEEEcccCcc---C
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQS---V 77 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~---~ 77 (184)
...+...+. ..+..+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++ .++.++.+|+.+. +
T Consensus 239 s~lv~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~ 317 (444)
T PRK14902 239 SMLVAPALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKF 317 (444)
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchh
Confidence 334445555 6778899999999999999999885 6689999999 8888777653 4589999998762 3
Q ss_pred CCC-CEEEechhh------hcCC-------hHH-------HHHHHHHHHhhCCCCcEEEEEee
Q 030025 78 PNG-DAILIKWIL------HDWS-------DEH-------CLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 78 ~~~-D~i~~~~~l------~~~~-------~~~-------~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+.. |+|++.-.. .+.+ ..+ ...+++.+.+.|||||+++.+.-
T Consensus 318 ~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 318 AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 333 999874321 1111 111 13689999999999999997653
No 143
>PHA03412 putative methyltransferase; Provisional
Probab=99.18 E-value=3.6e-10 Score=82.30 Aligned_cols=94 Identities=13% Similarity=0.151 Sum_probs=72.4
Q ss_pred CCeEEEecCCcChHHHHHHhhC---CCCeEEEeec-hhHhhhCCCC-CCceEEEcccCc-cCCCC-CEEEechhhhcCCh
Q 030025 22 IKQLVDVGGSLGNTLKAITSKY---PHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQ-SVPNG-DAILIKWILHDWSD 94 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~---~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~-~~~~~-D~i~~~~~l~~~~~ 94 (184)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.|++. +++.++..|+.. ++... |+|+++=.++-...
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 6799999999999999998864 4579999999 9999999876 789999999986 44333 99999776663321
Q ss_pred ----------HHHHHHHHHHHhhCCCCcEEEE
Q 030025 95 ----------EHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 95 ----------~~~~~~l~~~~~~L~pgG~l~i 116 (184)
.-...+++++.++++||+ +|+
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~IL 160 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGT-FII 160 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCE-EEe
Confidence 123468899999776666 444
No 144
>PLN02672 methionine S-methyltransferase
Probab=99.18 E-value=4e-10 Score=97.59 Aligned_cols=122 Identities=18% Similarity=0.126 Sum_probs=88.3
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------------------CCceEEEcccCccCC
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------------------PGVKHVGGDMFQSVP 78 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------------------~~i~~~~~d~~~~~~ 78 (184)
..+|||+|||+|.++..++++++..+++++|+ +.+++.|+++ ++++++.+|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999998889999999 8888887432 258999999988443
Q ss_pred C----CCEEEechhh------hcCC--------------------------hH----HHHHHHHHHHhhCCCCcEEEEEe
Q 030025 79 N----GDAILIKWIL------HDWS--------------------------DE----HCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 79 ~----~D~i~~~~~l------~~~~--------------------------~~----~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
. .|+|+++=.. ..++ ++ -..+++.++.+.|+|||.+++ |
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l-E 277 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF-N 277 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE-E
Confidence 2 3999884321 0000 00 114677888889999998876 3
Q ss_pred eecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHH-HHHHHcCCceeEEEee
Q 030025 119 SVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFT-TLATEAGFSGIRFVCF 173 (184)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~aGf~~i~~~~~ 173 (184)
... ...+.+. ++|++.||+.++++..
T Consensus 278 iG~-----------------------------~q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 278 MGG-----------------------------RPGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred ECc-----------------------------cHHHHHHHHHHHHCCCCeeEEeee
Confidence 211 0234566 5888999998887754
No 145
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.18 E-value=3.1e-10 Score=90.98 Aligned_cols=111 Identities=16% Similarity=0.137 Sum_probs=82.4
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-c---
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-S--- 76 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~--- 76 (184)
...+...+. ..++.+|||+|||+|..+..+++.. +..+++++|. +.+++.++++ .++.++.+|+.+ +
T Consensus 241 s~l~~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~ 319 (434)
T PRK14901 241 AQLVAPLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELK 319 (434)
T ss_pred HHHHHHHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccc
Confidence 444455566 6778999999999999999999885 4469999999 8888877653 468999999876 2
Q ss_pred -CC-CC-CEEEec------hhhhcCChH-------H-------HHHHHHHHHhhCCCCcEEEEEeee
Q 030025 77 -VP-NG-DAILIK------WILHDWSDE-------H-------CLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 77 -~~-~~-D~i~~~------~~l~~~~~~-------~-------~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
.. .. |.|++. .++++.++. + ..++|+++.+.|||||+|+.++-.
T Consensus 320 ~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 320 PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 11 23 999863 344443321 1 247899999999999999987643
No 146
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.18 E-value=6.2e-11 Score=91.29 Aligned_cols=98 Identities=20% Similarity=0.261 Sum_probs=69.1
Q ss_pred CCCeEEEecCCcCh-HHHHHHhhCCCCeEEEeec-hhHhhhCCCC------------C----CceEEEcccCc-c----C
Q 030025 21 HIKQLVDVGGSLGN-TLKAITSKYPHIKGINFDL-PHVIQHSPEY------------P----GVKHVGGDMFQ-S----V 77 (184)
Q Consensus 21 ~~~~ilDiG~G~G~-~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------------~----~i~~~~~d~~~-~----~ 77 (184)
+..+|||+|||-|. +.++... ....++|+|+ ...++.|+++ . ...++.+|... . +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 67899999999665 5555443 3569999999 7777777543 1 25667888764 1 1
Q ss_pred -CC--C-CEEEechhhhc-CChH-HHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 78 -PN--G-DAILIKWILHD-WSDE-HCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 78 -~~--~-D~i~~~~~l~~-~~~~-~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
+. . |+|-|.+++|+ +..+ .+..+|+++.+.|+|||+++.+.+.
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 22 3 99999999999 5544 4456999999999999999987663
No 147
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.17 E-value=5.2e-11 Score=85.37 Aligned_cols=96 Identities=17% Similarity=0.279 Sum_probs=69.3
Q ss_pred CeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC------CCCceEEEcccCc----cCC-CC-CEEEechhh
Q 030025 23 KQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE------YPGVKHVGGDMFQ----SVP-NG-DAILIKWIL 89 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~----~~~-~~-D~i~~~~~l 89 (184)
..+||||||.|.++..+++.+|+..++|+|. ...+..+.+ ..|+.++++|+.. -++ .. |-|++.+.=
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 3899999999999999999999999999998 665555433 3899999999987 233 33 777774432
Q ss_pred hcCChH------HHHHHHHHHHhhCCCCcEEEEEe
Q 030025 90 HDWSDE------HCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 90 ~~~~~~------~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
=+.... -...+++.+.+.|+|||.+.+.+
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 111100 01268999999999999998865
No 148
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.16 E-value=3.3e-10 Score=91.10 Aligned_cols=109 Identities=16% Similarity=0.181 Sum_probs=78.8
Q ss_pred HHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC------CCceEEEcccCccCC-C-CC
Q 030025 12 ILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSVP-N-GD 81 (184)
Q Consensus 12 l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~~-~-~D 81 (184)
....+. ..+..+|||+|||+|..+..+++.. ...+++++|. +.+++.++++ .++.++.+|+.+..+ . .|
T Consensus 242 ~~~~l~-~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD 320 (445)
T PRK14904 242 ACLLLN-PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPD 320 (445)
T ss_pred HHHhcC-CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCC
Confidence 334444 5677899999999999999888875 3469999999 8898877654 468899999877322 2 39
Q ss_pred EEEec------hhhh-------cCChH-------HHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 82 AILIK------WILH-------DWSDE-------HCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 82 ~i~~~------~~l~-------~~~~~-------~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
+|++. .++. ++..+ ....+|+++.+.|||||+++.++-..
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 99862 1111 11111 12368999999999999999977544
No 149
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.13 E-value=4.5e-10 Score=84.77 Aligned_cols=98 Identities=13% Similarity=0.118 Sum_probs=76.5
Q ss_pred CCCeEEEecCCcCh--HHHHHH--hhC----CCCeEEEeec-hhHhhhCCCC----------------------------
Q 030025 21 HIKQLVDVGGSLGN--TLKAIT--SKY----PHIKGINFDL-PHVIQHSPEY---------------------------- 63 (184)
Q Consensus 21 ~~~~ilDiG~G~G~--~~~~l~--~~~----~~~~~~~~D~-~~~~~~a~~~---------------------------- 63 (184)
+.-+|+-.||+||. ++.+|+ +.. ..+++++.|+ +.+++.|++-
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 34699999999993 444443 322 1478999999 8888877541
Q ss_pred ---------CCceEEEcccCc-cCC--CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 64 ---------PGVKHVGGDMFQ-SVP--NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 64 ---------~~i~~~~~d~~~-~~~--~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
..|.|...|+.+ +++ .. |+|+|.+++.|++++...++++++.+.|+|||+|++..
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 247888888887 443 33 99999999999998888899999999999999988854
No 150
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.11 E-value=1.7e-09 Score=80.74 Aligned_cols=98 Identities=16% Similarity=0.209 Sum_probs=78.9
Q ss_pred CCCeEEEecCCcCh--HHHH--HHhhCC-----CCeEEEeec-hhHhhhCCCC---------------------------
Q 030025 21 HIKQLVDVGGSLGN--TLKA--ITSKYP-----HIKGINFDL-PHVIQHSPEY--------------------------- 63 (184)
Q Consensus 21 ~~~~ilDiG~G~G~--~~~~--l~~~~~-----~~~~~~~D~-~~~~~~a~~~--------------------------- 63 (184)
+.-+|.-.||+||. ++.+ +.+..+ .+++++.|+ ..+++.|+.-
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 46799999999993 3333 334453 589999999 8888888541
Q ss_pred --------CCceEEEcccCc-c-CCCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 64 --------PGVKHVGGDMFQ-S-VPNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 64 --------~~i~~~~~d~~~-~-~~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
..|.|...|+.. + .+.. |+|+|.+|+-++..+...+++++++..|+|||.|++..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 248888999987 4 4444 99999999999998888899999999999999999954
No 151
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.10 E-value=1.2e-09 Score=87.47 Aligned_cols=111 Identities=18% Similarity=0.212 Sum_probs=80.5
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-c--CC
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-S--VP 78 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~--~~ 78 (184)
..+...+. ..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++ .++.+..+|..+ + ..
T Consensus 227 ~~~~~~l~-~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~ 305 (431)
T PRK14903 227 QIVPLLME-LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQ 305 (431)
T ss_pred HHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhh
Confidence 33444455 6778899999999999999999885 4679999999 8888888664 457889999875 2 22
Q ss_pred CC-CEEEech------hhhcCCh--------------HHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 79 NG-DAILIKW------ILHDWSD--------------EHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 79 ~~-D~i~~~~------~l~~~~~--------------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
.. |.|++.- ++..-++ ....++|+++.+.|||||.++.+.-..
T Consensus 306 ~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 306 DTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred ccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 33 9998622 2221111 012478999999999999998876544
No 152
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.08 E-value=1.3e-09 Score=81.84 Aligned_cols=107 Identities=17% Similarity=0.208 Sum_probs=76.6
Q ss_pred HHhcCCCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cC--CCCCE
Q 030025 14 EAYKGFEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SV--PNGDA 82 (184)
Q Consensus 14 ~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~--~~~D~ 82 (184)
..+. ..+..+|||+|||+|..+..+++... ...++++|. +.+++.++++ .++.+...|... +. +..|.
T Consensus 65 ~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~ 143 (264)
T TIGR00446 65 LALE-PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDA 143 (264)
T ss_pred HHhC-CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCE
Confidence 3444 66788999999999999999998863 468999999 8888777653 468888888765 22 22499
Q ss_pred EEech------hhhc-------CChH-------HHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 83 ILIKW------ILHD-------WSDE-------HCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 83 i~~~~------~l~~-------~~~~-------~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
|++.- ++.+ +.+. ...++|+.+.+.|||||+|+.+.-..
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 98632 1211 1111 12369999999999999998876443
No 153
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.02 E-value=4.5e-09 Score=84.56 Aligned_cols=103 Identities=14% Similarity=0.151 Sum_probs=76.0
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCcc--
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQS-- 76 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~-- 76 (184)
..+++.+++.+. ..+..+|||+|||+|.++..+++.. .+++++|. +.|++.|+++ .+++++.+|+.+.
T Consensus 283 e~l~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~ 359 (443)
T PRK13168 283 QKMVARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhh
Confidence 456677777776 6777899999999999999999875 58999999 8999988764 4699999998752
Q ss_pred ---CC-CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 77 ---VP-NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 77 ---~~-~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
++ .. |+|++.-.-.- ..++++.+.+ ++|++.++++
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~g-----~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRAG-----AAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred hhhhhcCCCCEEEECcCCcC-----hHHHHHHHHh-cCCCeEEEEE
Confidence 22 22 99988433221 1245565555 6888887773
No 154
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.02 E-value=3.6e-09 Score=79.07 Aligned_cols=94 Identities=17% Similarity=0.268 Sum_probs=70.6
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEcccCc-cCC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~-~~~ 78 (184)
+..+++++++.+. ..+..+|||||||+|.++..++++.+ .++++|. +.+++.+++. ++++++.+|+.+ +++
T Consensus 14 d~~i~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 14 DESVIQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP 90 (253)
T ss_pred CHHHHHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh
Confidence 4567889999988 88889999999999999999999875 5889998 8888777653 679999999987 554
Q ss_pred CCC---EEEechhhhcCChHHHHHHHHHHHh
Q 030025 79 NGD---AILIKWILHDWSDEHCLKLLKNCHK 106 (184)
Q Consensus 79 ~~D---~i~~~~~l~~~~~~~~~~~l~~~~~ 106 (184)
..| +|+++.. +|+.. .++.++..
T Consensus 91 ~~d~~~~vvsNlP-y~i~~----~il~~ll~ 116 (253)
T TIGR00755 91 DFPKQLKVVSNLP-YNISS----PLIFKLLE 116 (253)
T ss_pred HcCCcceEEEcCC-hhhHH----HHHHHHhc
Confidence 334 5555444 44433 34555544
No 155
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.02 E-value=1.3e-09 Score=81.88 Aligned_cols=114 Identities=18% Similarity=0.272 Sum_probs=83.2
Q ss_pred cccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--------C----CceEE
Q 030025 3 NHTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--------P----GVKHV 69 (184)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------~----~i~~~ 69 (184)
+++..+-..|+..+. ++...++|+|||-|.=+..--+. ....++++|+ ...++.|+++ . .+.|+
T Consensus 101 nfNNwIKs~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~ 177 (389)
T KOG1975|consen 101 NFNNWIKSVLINLYT--KRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFI 177 (389)
T ss_pred hhhHHHHHHHHHHHh--ccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEE
Confidence 344455555666664 78889999999988655544443 2458999999 7788887764 1 36788
Q ss_pred EcccCc-c----C--CC--CCEEEechhhhc-CC-hHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 70 GGDMFQ-S----V--PN--GDAILIKWILHD-WS-DEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 70 ~~d~~~-~----~--~~--~D~i~~~~~l~~-~~-~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.+|-+. . + ++ .|+|-|-+++|+ |. .+.+..+|+++.+.|+|||+++-+-+
T Consensus 178 ~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 178 AADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred EeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 888765 1 2 22 399999999998 55 44566899999999999999987654
No 156
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.02 E-value=1.6e-09 Score=81.81 Aligned_cols=85 Identities=13% Similarity=0.199 Sum_probs=68.1
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---CCceEEEcccCc-cCCC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---PGVKHVGGDMFQ-SVPN 79 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~~i~~~~~d~~~-~~~~ 79 (184)
+..+++.+++.+. ..+..+|||||||+|.++..++++.+ +++++|+ +.|++.+++. ++++++.+|+.+ +++.
T Consensus 27 ~~~i~~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 27 DENILDKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSE 103 (272)
T ss_pred CHHHHHHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHH
Confidence 4567888999887 88889999999999999999999864 8899999 8999888764 589999999987 5544
Q ss_pred C--CEEEechhhhcCC
Q 030025 80 G--DAILIKWILHDWS 93 (184)
Q Consensus 80 ~--D~i~~~~~l~~~~ 93 (184)
. |.|+++-. +++.
T Consensus 104 ~~~~~vv~NlP-Y~is 118 (272)
T PRK00274 104 LQPLKVVANLP-YNIT 118 (272)
T ss_pred cCcceEEEeCC-ccch
Confidence 3 66666543 4444
No 157
>PLN02476 O-methyltransferase
Probab=99.01 E-value=4.2e-09 Score=79.01 Aligned_cols=100 Identities=12% Similarity=0.097 Sum_probs=78.6
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc---C-----CC-C
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS---V-----PN-G 80 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~---~-----~~-~ 80 (184)
..+.++|||||+++|+.+.+++...+ ..+++.+|. ++..+.|+++ ++++++.+|+.+. + .. .
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 55689999999999999999998754 568999999 8888888664 5799999998762 1 12 3
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
|+|++-.. .......++.+.++|+|||.+++-+..+..
T Consensus 196 D~VFIDa~-----K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G 233 (278)
T PLN02476 196 DFAFVDAD-----KRMYQDYFELLLQLVRVGGVIVMDNVLWHG 233 (278)
T ss_pred CEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEecCccCC
Confidence 99988443 345668899999999999998886655543
No 158
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.01 E-value=1.4e-09 Score=81.56 Aligned_cols=85 Identities=15% Similarity=0.254 Sum_probs=69.8
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----CCceEEEcccCc-cCC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~-~~~ 78 (184)
+..+++.+++.+. ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++. ++++++.+|+.+ +++
T Consensus 14 d~~~~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~ 90 (258)
T PRK14896 14 DDRVVDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLP 90 (258)
T ss_pred CHHHHHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCch
Confidence 5677889999887 8888999999999999999999983 58999999 8888877653 679999999988 665
Q ss_pred CCCEEEechhhhcCC
Q 030025 79 NGDAILIKWILHDWS 93 (184)
Q Consensus 79 ~~D~i~~~~~l~~~~ 93 (184)
..|.|+++... ++.
T Consensus 91 ~~d~Vv~NlPy-~i~ 104 (258)
T PRK14896 91 EFNKVVSNLPY-QIS 104 (258)
T ss_pred hceEEEEcCCc-ccC
Confidence 55888886664 444
No 159
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.01 E-value=1.9e-09 Score=77.99 Aligned_cols=99 Identities=12% Similarity=0.191 Sum_probs=79.1
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC-------CCceEEE-cccCccC-----CCCCEE
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY-------PGVKHVG-GDMFQSV-----PNGDAI 83 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-------~~i~~~~-~d~~~~~-----~~~D~i 83 (184)
..+.++|||||.++|+.+.+|+...| +.+++.+|. +++.+.|+++ +++..+. +|..+.+ +..|+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 56789999999999999999999988 889999999 9999999875 4577777 5877622 223999
Q ss_pred EechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecC
Q 030025 84 LIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLP 122 (184)
Q Consensus 84 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 122 (184)
++-.. .......|+.+.++|+|||.+++-....+
T Consensus 137 FIDad-----K~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 137 FIDAD-----KADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred EEeCC-----hhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 98433 23445789999999999999888655544
No 160
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.00 E-value=2.8e-09 Score=77.83 Aligned_cols=96 Identities=16% Similarity=0.252 Sum_probs=71.4
Q ss_pred CeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC----C--CCceEEEcccCc---c-CCC-C-CEEEechhh
Q 030025 23 KQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE----Y--PGVKHVGGDMFQ---S-VPN-G-DAILIKWIL 89 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~----~--~~i~~~~~d~~~---~-~~~-~-D~i~~~~~l 89 (184)
..+||||||.|.++..+|+++|+..++|+++ ...+..+.+ . +|+.+++.|+.. . .++ . |-|++++.=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 5899999999999999999999999999997 444433322 1 489999999986 2 344 4 888775542
Q ss_pred hcCCh------HHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 90 HDWSD------EHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 90 ~~~~~------~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
=|... --...+++.+.+.|+|||.|.+.+
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 11100 001268999999999999999965
No 161
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.99 E-value=2.7e-08 Score=71.19 Aligned_cols=136 Identities=15% Similarity=0.198 Sum_probs=97.8
Q ss_pred ccHHhHHHHHHHhcCCCC----CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-cC
Q 030025 4 HTTLVLQKILEAYKGFEH----IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-SV 77 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~----~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~ 77 (184)
++..+++.+..... -.+ .-++|||||=+...... .++-..++.+|+ |+ .=.+.+.|+.+ |+
T Consensus 31 SSK~lv~wL~~~~~-~~~~~~~~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~---------~~~I~qqDFm~rpl 97 (219)
T PF11968_consen 31 SSKWLVEWLKELGV-RPKNGRPKLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ---------HPGILQQDFMERPL 97 (219)
T ss_pred hhHHHHHHhhhhcc-ccccccccceEEeecccCCCCccc---ccCceeeEEeecCCC---------CCCceeeccccCCC
Confidence 45556666655544 222 25999999865554432 344567899997 41 22345678887 66
Q ss_pred CC----C-CEEEechhhhcCCh-HHHHHHHHHHHhhCCCCcE-----EEEEeeecCCCCCCCccccchhhhhhHhhhhCC
Q 030025 78 PN----G-DAILIKWILHDWSD-EHCLKLLKNCHKSIPEGGK-----VIVVESVLPELPENGTHSKINSLADVLVMTQYP 146 (184)
Q Consensus 78 ~~----~-D~i~~~~~l~~~~~-~~~~~~l~~~~~~L~pgG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (184)
|. . |+|.++.+|.++|+ .++.++++++.+.|+|+|. |+++-+.. . ..
T Consensus 98 p~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~---C-------------------v~ 155 (219)
T PF11968_consen 98 PKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP---C-------------------VT 155 (219)
T ss_pred CCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch---H-------------------hh
Confidence 52 2 99999999999984 4677999999999999999 87754321 0 12
Q ss_pred CccccCHHHHHHHHHHcCCceeEEEeec
Q 030025 147 GGKERTKHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 147 ~~~~~~~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
++++.+.+.|.++++..||..++.+...
T Consensus 156 NSRy~~~~~l~~im~~LGf~~~~~~~~~ 183 (219)
T PF11968_consen 156 NSRYMTEERLREIMESLGFTRVKYKKSK 183 (219)
T ss_pred cccccCHHHHHHHHHhCCcEEEEEEecC
Confidence 5677899999999999999999887664
No 162
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.99 E-value=1.8e-08 Score=73.77 Aligned_cols=145 Identities=15% Similarity=0.162 Sum_probs=85.5
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhh-hCCCCCCce-EEEcccCc-c---C-CC-
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQ-HSPEYPGVK-HVGGDMFQ-S---V-PN- 79 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~-~a~~~~~i~-~~~~d~~~-~---~-~~- 79 (184)
...+++.++...+..++||+|||||.++..+++. ...+++++|. +.|+. ..++.+++. +...|+.. . + ++
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~ 141 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDF 141 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCc
Confidence 4456666652236679999999999999999987 3468999999 65555 455555543 44444442 1 1 11
Q ss_pred --CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEE-EeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHH
Q 030025 80 --GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIV-VESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEF 156 (184)
Q Consensus 80 --~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
.|+++++.. .++..+.++|+| |.+++ .-|.++-........ ....+. ..+..-.+++
T Consensus 142 ~~~DvsfiS~~----------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~--giv~~~-------~~~~~~~~~~ 201 (228)
T TIGR00478 142 ATFDVSFISLI----------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKK--GVVRDK-------EAIALALHKV 201 (228)
T ss_pred eeeeEEEeehH----------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcC--CeecCH-------HHHHHHHHHH
Confidence 165555333 358889999999 66654 333332211000000 000000 0112245777
Q ss_pred HHHHHHcCCceeEEEeec
Q 030025 157 TTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 157 ~~~l~~aGf~~i~~~~~~ 174 (184)
...+++.||+.+.+.+.+
T Consensus 202 ~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 202 IDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHcCCCeEeeEEECC
Confidence 788889999988877654
No 163
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.97 E-value=7.9e-10 Score=79.74 Aligned_cols=97 Identities=15% Similarity=0.254 Sum_probs=75.5
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc---C------CCCC
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS---V------PNGD 81 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~---~------~~~D 81 (184)
.++++|||||+++|+.+.++++..| +.+++.+|. +...+.|++. .+++++.+|+.+. + +..|
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 3589999999999999999999875 589999999 8888888663 5799999999761 1 1239
Q ss_pred EEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 82 AILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 82 ~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
+|++-.. ..+....++.+.++|+|||.+++-+..+
T Consensus 124 ~VFiDa~-----K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 124 FVFIDAD-----KRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp EEEEEST-----GGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred EEEEccc-----ccchhhHHHHHhhhccCCeEEEEccccc
Confidence 9999553 2344578999999999999988865544
No 164
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.97 E-value=6.2e-09 Score=74.79 Aligned_cols=111 Identities=9% Similarity=0.035 Sum_probs=76.4
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCccC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSV 77 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~ 77 (184)
...+...+++.+....+..+|||+|||+|.++..++.+. ..+++++|. +.+++.++++ .++.++.+|+.+.+
T Consensus 37 ~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l 115 (199)
T PRK10909 37 TDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFL 115 (199)
T ss_pred CHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHH
Confidence 345556667766423456799999999999998766665 368999998 8888777653 46889999987622
Q ss_pred ---CC-CCEEEechhhhcCChHHHHHHHHHHHh--hCCCCcEEEEEee
Q 030025 78 ---PN-GDAILIKWILHDWSDEHCLKLLKNCHK--SIPEGGKVIVVES 119 (184)
Q Consensus 78 ---~~-~D~i~~~~~l~~~~~~~~~~~l~~~~~--~L~pgG~l~i~~~ 119 (184)
.. .|+|++.=.+.. .- ...+++.+.+ +|+|+|.+++...
T Consensus 116 ~~~~~~fDlV~~DPPy~~-g~--~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 116 AQPGTPHNVVFVDPPFRK-GL--LEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred hhcCCCceEEEECCCCCC-Ch--HHHHHHHHHHCCCcCCCcEEEEEec
Confidence 22 399998766432 21 1245565555 4899888777543
No 165
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.94 E-value=1.5e-08 Score=85.78 Aligned_cols=97 Identities=12% Similarity=0.157 Sum_probs=72.5
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--------CCceEEEcccCcc---CCCC-CEEEech
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--------PGVKHVGGDMFQS---VPNG-DAILIKW 87 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------~~i~~~~~d~~~~---~~~~-D~i~~~~ 87 (184)
+.++|||+|||+|.++..+++.. ..+++++|. +.+++.++++ .+++++.+|+.+. .+.. |+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 46899999999999999999863 347999999 8899988764 2588999998762 2333 9999843
Q ss_pred hhh-------c-C-ChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 88 ILH-------D-W-SDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 88 ~l~-------~-~-~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
.-. . + .......+++.+.++|+|||.+++..
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 211 0 0 11234578899999999999988753
No 166
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.94 E-value=1.2e-08 Score=80.75 Aligned_cols=98 Identities=10% Similarity=0.050 Sum_probs=70.4
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--------CCceEEEcccCcc---C---CC-CCEE
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--------PGVKHVGGDMFQS---V---PN-GDAI 83 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------~~i~~~~~d~~~~---~---~~-~D~i 83 (184)
.+..+|||+|||+|.++...+.. ...+++++|. +.+++.++++ .+++++.+|+.+. + .. .|+|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 35689999999999998776543 3458999999 8899888764 2578999999862 1 22 3999
Q ss_pred EechhhhcCCh-------HHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 84 LIKWILHDWSD-------EHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 84 ~~~~~l~~~~~-------~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
++.-....-.. .....+++.+.++|+|||.++...
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 98644211111 123456677889999999999855
No 167
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.93 E-value=4.7e-09 Score=75.64 Aligned_cols=115 Identities=16% Similarity=0.275 Sum_probs=72.7
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC---------------CCCceE
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE---------------YPGVKH 68 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~---------------~~~i~~ 68 (184)
.-.....+++.++ +.+....+|||||.|......+...+--+.+|+++ +...+.|+. ..++++
T Consensus 27 ~~~~~~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l 105 (205)
T PF08123_consen 27 SPEFVSKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVEL 105 (205)
T ss_dssp HHHHHHHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEE
T ss_pred CHHHHHHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccccee
Confidence 3456778888988 99999999999999999988887775555999997 655554432 145788
Q ss_pred EEcccCc-c-----CCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 69 VGGDMFQ-S-----VPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 69 ~~~d~~~-~-----~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
..+|+.+ + +.++|+|++++... ++ +...-+.+....||||-+++-.....+.
T Consensus 106 ~~gdfl~~~~~~~~~s~AdvVf~Nn~~F--~~-~l~~~L~~~~~~lk~G~~IIs~~~~~~~ 163 (205)
T PF08123_consen 106 IHGDFLDPDFVKDIWSDADVVFVNNTCF--DP-DLNLALAELLLELKPGARIISTKPFCPR 163 (205)
T ss_dssp ECS-TTTHHHHHHHGHC-SEEEE--TTT---H-HHHHHHHHHHTTS-TT-EEEESS-SS-T
T ss_pred eccCccccHhHhhhhcCCCEEEEecccc--CH-HHHHHHHHHHhcCCCCCEEEECCCcCCC
Confidence 8999987 3 34569999988754 43 3445567777889999888776555544
No 168
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.92 E-value=1.1e-08 Score=77.21 Aligned_cols=113 Identities=16% Similarity=0.315 Sum_probs=79.2
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC----CCceEE--EcccC-c--c
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY----PGVKHV--GGDMF-Q--S 76 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~----~~i~~~--~~d~~-~--~ 76 (184)
+..++...++ .-.+.+|||+|||.|..+-++.+.++ ..+++.+|. +.|++.++.. ++.... ..+.. + +
T Consensus 21 vl~El~~r~p-~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 99 (274)
T PF09243_consen 21 VLSELRKRLP-DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLP 99 (274)
T ss_pred HHHHHHHhCc-CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccccc
Confidence 4455555555 33567999999999988877777665 357889998 8888876553 211111 11111 1 2
Q ss_pred CCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 77 VPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 77 ~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
++..|+|+++++|..+++.+...+++++.+.+.+ .|+|.|+..+.
T Consensus 100 ~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 100 FPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred CCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 3334999999999999988788999999888876 89998876654
No 169
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.92 E-value=1e-09 Score=78.78 Aligned_cols=140 Identities=21% Similarity=0.213 Sum_probs=95.3
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--CC--ceEEEcccCc-cCCCC--CEEEechhhhcC
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--PG--VKHVGGDMFQ-SVPNG--DAILIKWILHDW 92 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--~~--i~~~~~d~~~-~~~~~--D~i~~~~~l~~~ 92 (184)
....++|||||-|+..+.+..+. --+++-+|. -.|++.++.. |. +.+..+|-+. ++.+. |+|+++..+|+.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 45789999999999999999886 457899998 7899988876 44 4556777665 66554 999999999987
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCc-----ccc-CHHHHHHHHHHcCCc
Q 030025 93 SDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGG-----KER-TKHEFTTLATEAGFS 166 (184)
Q Consensus 93 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~l~~aGf~ 166 (184)
.+- ..-+.+++..|||+|.++-+-...+...+ ......+..+. ..++ .++ -..++-.+|.+|||.
T Consensus 151 NdL--Pg~m~~ck~~lKPDg~FiasmlggdTLyE------LR~slqLAelE-R~GGiSphiSPf~qvrDiG~LL~rAGF~ 221 (325)
T KOG2940|consen 151 NDL--PGSMIQCKLALKPDGLFIASMLGGDTLYE------LRCSLQLAELE-REGGISPHISPFTQVRDIGNLLTRAGFS 221 (325)
T ss_pred ccC--chHHHHHHHhcCCCccchhHHhccccHHH------HHHHhhHHHHH-hccCCCCCcChhhhhhhhhhHHhhcCcc
Confidence 643 25688999999999998763322111100 00000111111 1111 112 357888999999999
Q ss_pred eeEE
Q 030025 167 GIRF 170 (184)
Q Consensus 167 ~i~~ 170 (184)
.+.+
T Consensus 222 m~tv 225 (325)
T KOG2940|consen 222 MLTV 225 (325)
T ss_pred ccee
Confidence 8754
No 170
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.91 E-value=8.5e-09 Score=78.42 Aligned_cols=93 Identities=22% Similarity=0.342 Sum_probs=71.5
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC-------CCCceEEEcccCc-
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE-------YPGVKHVGGDMFQ- 75 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~- 75 (184)
+..+++.+++.+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+
T Consensus 21 d~~i~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~ 97 (294)
T PTZ00338 21 NPLVLDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT 97 (294)
T ss_pred CHHHHHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh
Confidence 4567889999888 8888999999999999999999874 57899999 888887764 2579999999987
Q ss_pred cCCCCCEEEechhhhcCChHHHHHHH
Q 030025 76 SVPNGDAILIKWILHDWSDEHCLKLL 101 (184)
Q Consensus 76 ~~~~~D~i~~~~~l~~~~~~~~~~~l 101 (184)
+++..|.|+++ .-+++..+...+++
T Consensus 98 ~~~~~d~VvaN-lPY~Istpil~~ll 122 (294)
T PTZ00338 98 EFPYFDVCVAN-VPYQISSPLVFKLL 122 (294)
T ss_pred cccccCEEEec-CCcccCcHHHHHHH
Confidence 55545877764 44455554433344
No 171
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.91 E-value=2.9e-08 Score=71.54 Aligned_cols=133 Identities=16% Similarity=0.182 Sum_probs=91.8
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--------CCceEEEcccCc---cCCCC--CEEE
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--------PGVKHVGGDMFQ---SVPNG--DAIL 84 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------~~i~~~~~d~~~---~~~~~--D~i~ 84 (184)
.++..+|||.+.|-|+++...+++. ...++.++. ++.++.|.-+ .+++.+.+|..+ .+++. |+|+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 3467899999999999999988884 238888888 9999988765 358999999987 55554 8886
Q ss_pred echhhhcC-ChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHc
Q 030025 85 IKWILHDW-SDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEA 163 (184)
Q Consensus 85 ~~~~l~~~-~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 163 (184)
-.-.=..+ ..--..++.++++|+|||||.++=..-..... +.+ .--+..+.+.|+++
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r--------------------yrG--~d~~~gVa~RLr~v 268 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR--------------------YRG--LDLPKGVAERLRRV 268 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc--------------------ccc--CChhHHHHHHHHhc
Confidence 41100000 11112379999999999999987533111110 000 11468889999999
Q ss_pred CCceeEEEeec
Q 030025 164 GFSGIRFVCFF 174 (184)
Q Consensus 164 Gf~~i~~~~~~ 174 (184)
||..++.....
T Consensus 269 GF~~v~~~~~~ 279 (287)
T COG2521 269 GFEVVKKVREA 279 (287)
T ss_pred Cceeeeeehhc
Confidence 99988776543
No 172
>PLN02823 spermine synthase
Probab=98.90 E-value=8.2e-09 Score=79.75 Aligned_cols=108 Identities=13% Similarity=0.101 Sum_probs=77.6
Q ss_pred HHHHHHHhcC--CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEcccCc
Q 030025 9 LQKILEAYKG--FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGDMFQ 75 (184)
Q Consensus 9 ~~~l~~~~~~--~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d~~~ 75 (184)
..+++.+.+. .+.+++||.||+|.|..++.+++..+..+++.+|+ +.+++.++++ ++++++.+|..+
T Consensus 89 YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~ 168 (336)
T PLN02823 89 YHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARA 168 (336)
T ss_pred HHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHH
Confidence 4444444331 23568999999999999999998766678999999 9999988763 679999999887
Q ss_pred cC---CC-CCEEEechhhhcC--ChH---HHHHHHH-HHHhhCCCCcEEEEE
Q 030025 76 SV---PN-GDAILIKWILHDW--SDE---HCLKLLK-NCHKSIPEGGKVIVV 117 (184)
Q Consensus 76 ~~---~~-~D~i~~~~~l~~~--~~~---~~~~~l~-~~~~~L~pgG~l~i~ 117 (184)
.+ +. .|+|++-.. ... ... -..++++ .+++.|+|||.+++.
T Consensus 169 ~L~~~~~~yDvIi~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 169 ELEKRDEKFDVIIGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred HHhhCCCCccEEEecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 22 22 399998632 111 000 0236788 899999999998874
No 173
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.87 E-value=2.2e-08 Score=75.42 Aligned_cols=110 Identities=18% Similarity=0.333 Sum_probs=84.3
Q ss_pred HhHHHHHHHhcCC--CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEccc
Q 030025 7 LVLQKILEAYKGF--EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGDM 73 (184)
Q Consensus 7 ~~~~~l~~~~~~~--~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d~ 73 (184)
....+++.+.+.+ +..++||-||.|.|.+++.+++..+..+++.+|+ +.+++.++++ ++++.+..|.
T Consensus 60 ~~yhEml~h~~~~ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg 139 (282)
T COG0421 60 FIYHEMLAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDG 139 (282)
T ss_pred HHHHHHHHhchhhhCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccH
Confidence 3455666665532 2346999999999999999999988889999999 9999999885 6789999998
Q ss_pred Cc---cCCC-CCEEEechhhhcCChH---HHHHHHHHHHhhCCCCcEEEEE
Q 030025 74 FQ---SVPN-GDAILIKWILHDWSDE---HCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 74 ~~---~~~~-~D~i~~~~~l~~~~~~---~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
.+ ..+. .|+|++-..=. ..+. -...+++.+++.|+|+|.++..
T Consensus 140 ~~~v~~~~~~fDvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 140 VEFLRDCEEKFDVIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred HHHHHhCCCcCCEEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 87 2333 39999855433 1110 1137999999999999999986
No 174
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.85 E-value=1.6e-08 Score=74.85 Aligned_cols=99 Identities=13% Similarity=0.119 Sum_probs=76.6
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccC----------CC
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSV----------PN 79 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~----------~~ 79 (184)
..+.++|||||+++|+.+.+++... ++.+++.+|. ++..+.|++. ++|+++.+|+.+.+ +.
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 3458899999999999999999875 5689999998 8777777653 68999999987621 12
Q ss_pred CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecC
Q 030025 80 GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLP 122 (184)
Q Consensus 80 ~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 122 (184)
.|+|++-.- .......++.+.++|+|||.+++-+..+.
T Consensus 157 fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~DNvl~~ 194 (247)
T PLN02589 157 FDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGYDNTLWN 194 (247)
T ss_pred ccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEEcCCCCC
Confidence 399998543 33455788999999999999887554443
No 175
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.84 E-value=4.5e-08 Score=78.59 Aligned_cols=102 Identities=14% Similarity=0.211 Sum_probs=73.7
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCcc---
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQS--- 76 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~--- 76 (184)
.+.+.+.+.+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.|+++ .+++++.+|+.+.
T Consensus 279 ~l~~~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~ 355 (431)
T TIGR00479 279 KLVDRALEALE-LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPK 355 (431)
T ss_pred HHHHHHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHH
Confidence 44556666665 6777899999999999999999874 48999999 8999888764 5799999998651
Q ss_pred --CC-CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 77 --VP-NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 77 --~~-~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
.. .. |+|++.-.-.-+ . ..+++.+.+ ++|++.+++
T Consensus 356 ~~~~~~~~D~vi~dPPr~G~-~---~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 356 QPWAGQIPDVLLLDPPRKGC-A---AEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred HHhcCCCCCEEEECcCCCCC-C---HHHHHHHHh-cCCCEEEEE
Confidence 21 22 999874331111 1 256666554 789887766
No 176
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.5e-08 Score=71.89 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=75.7
Q ss_pred hHHHHHHHhcC-CCCCCeEEEecCCcChHHHHHHhhC--CCCeEEEeec-hhHhhhCCCC----------------CCce
Q 030025 8 VLQKILEAYKG-FEHIKQLVDVGGSLGNTLKAITSKY--PHIKGINFDL-PHVIQHSPEY----------------PGVK 67 (184)
Q Consensus 8 ~~~~l~~~~~~-~~~~~~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~----------------~~i~ 67 (184)
+...+++.+.+ +.+..+.||+|+|+|+++.-++... +....+|+|. ++.++.++++ .++.
T Consensus 68 mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ 147 (237)
T KOG1661|consen 68 MHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS 147 (237)
T ss_pred HHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE
Confidence 34445555442 6688999999999999998888663 3444589998 9999888764 4678
Q ss_pred EEEcccCcc-CC--CCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 68 HVGGDMFQS-VP--NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 68 ~~~~d~~~~-~~--~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
++.+|-..- .+ .+|.|.+..... ++-+++...|+|||++++.
T Consensus 148 ivvGDgr~g~~e~a~YDaIhvGAaa~--------~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 148 IVVGDGRKGYAEQAPYDAIHVGAAAS--------ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred EEeCCccccCCccCCcceEEEccCcc--------ccHHHHHHhhccCCeEEEe
Confidence 889998872 22 339999974432 4577788899999999983
No 177
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.83 E-value=7.9e-09 Score=78.63 Aligned_cols=95 Identities=18% Similarity=0.168 Sum_probs=71.6
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-------CCceEEEcccCc-cCC-CC-CEEEechhh
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-------PGVKHVGGDMFQ-SVP-NG-DAILIKWIL 89 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-------~~i~~~~~d~~~-~~~-~~-D~i~~~~~l 89 (184)
=+++.|||||||||-++...++.. ..+++++|.+.+.+.|++. .-++++++.+++ .+| +. |+|++.+.-
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 367999999999999999888876 5799999987777777653 348899999988 555 34 999998877
Q ss_pred hcCChHH-HHHHHHHHHhhCCCCcEEE
Q 030025 90 HDWSDEH-CLKLLKNCHKSIPEGGKVI 115 (184)
Q Consensus 90 ~~~~~~~-~~~~l~~~~~~L~pgG~l~ 115 (184)
+.+-.+. ...+|-.=-++|+|||.++
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 7654332 1234444457899999875
No 178
>PRK04148 hypothetical protein; Provisional
Probab=98.82 E-value=6.5e-08 Score=64.63 Aligned_cols=104 Identities=16% Similarity=0.211 Sum_probs=75.0
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcCh-HHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCcc-CC---CC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGN-TLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQS-VP---NG 80 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~-~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-~~---~~ 80 (184)
.+.+.+.+.++ -.+..+|+|||||+|. .+..|.+. +..++++|+ +..++.+++. .++++..|++++ .. ++
T Consensus 3 ~i~~~l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-~~~~v~dDlf~p~~~~y~~a 78 (134)
T PRK04148 3 TIAEFIAENYE-KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-GLNAFVDDLFNPNLEIYKNA 78 (134)
T ss_pred HHHHHHHHhcc-cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-CCeEEECcCCCCCHHHHhcC
Confidence 35566777776 5566899999999996 88777765 579999999 8887777543 579999999983 22 23
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
|+|++.. +++|...-+-++.+.+ |.-++|.....
T Consensus 79 ~liysir-----pp~el~~~~~~la~~~--~~~~~i~~l~~ 112 (134)
T PRK04148 79 KLIYSIR-----PPRDLQPFILELAKKI--NVPLIIKPLSG 112 (134)
T ss_pred CEEEEeC-----CCHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 9998843 4556666677777776 44577755443
No 179
>PRK00536 speE spermidine synthase; Provisional
Probab=98.81 E-value=5e-08 Score=72.74 Aligned_cols=102 Identities=13% Similarity=0.135 Sum_probs=77.7
Q ss_pred HHhHHHHHHHhcCC--CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEcc
Q 030025 6 TLVLQKILEAYKGF--EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGD 72 (184)
Q Consensus 6 ~~~~~~l~~~~~~~--~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d 72 (184)
..+..+++.+.+-. +.+++||=||+|.|..++.+++. |. +++.+|+ +.+++.++++ |+++++..
T Consensus 55 EfiYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~- 131 (262)
T PRK00536 55 LHIESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ- 131 (262)
T ss_pred hhhHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-
Confidence 44667777776632 56799999999999999999996 44 8999999 8999999884 67777652
Q ss_pred cCccC-CCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 73 MFQSV-PNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 73 ~~~~~-~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
+.+.. ...|+|++-.. .+ ..+++.+++.|+|||.++..
T Consensus 132 ~~~~~~~~fDVIIvDs~----~~---~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 132 LLDLDIKKYDLIICLQE----PD---IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred hhhccCCcCCEEEEcCC----CC---hHHHHHHHHhcCCCcEEEEC
Confidence 32222 23499999754 22 26899999999999999884
No 180
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.4e-07 Score=66.13 Aligned_cols=116 Identities=13% Similarity=0.118 Sum_probs=80.8
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCccCCCCCEEEechhhhcCC-
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQSVPNGDAILIKWILHDWS- 93 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~- 93 (184)
..++|+|+|||||.++...+...+ .+++++|+ +++++.++++ .++.|+..|+.+.....|.++++-.+.-+-
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~~r 123 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQRR 123 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCccccc
Confidence 457899999999999988777654 59999999 9999999876 469999999987544458888866555431
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEE
Q 030025 94 DEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFV 171 (184)
Q Consensus 94 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~ 171 (184)
..+ ..++..+.+.-+ ++- .+ .+.-+.+-+.+..+++|+++...+
T Consensus 124 haD-r~Fl~~Ale~s~----vVY---------------------si--------H~a~~~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 124 HAD-RPFLLKALEISD----VVY---------------------SI--------HKAGSRDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred cCC-HHHHHHHHHhhh----eEE---------------------Ee--------eccccHHHHHHHHHhcCCeEEEEE
Confidence 122 256666665531 111 00 011167788888999998877554
No 181
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=3.2e-07 Score=63.78 Aligned_cols=122 Identities=15% Similarity=0.200 Sum_probs=84.9
Q ss_pred CCeEEEecCCcChHHHHHHhh-CCCCeEEEeec-hhHhhhCCC-----CCCceEEEcccCccCC-CC-CEEEechhhhc-
Q 030025 22 IKQLVDVGGSLGNTLKAITSK-YPHIKGINFDL-PHVIQHSPE-----YPGVKHVGGDMFQSVP-NG-DAILIKWILHD- 91 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~~-~~-D~i~~~~~l~~- 91 (184)
..-++|||||+|..+..+++. .|++.+...|+ |.+++...+ ..++..++.|+.+... +. |+++.+-..--
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 678999999999999999988 58889999999 877766432 1457888999887332 33 88776432111
Q ss_pred -------------C-----ChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCH
Q 030025 92 -------------W-----SDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTK 153 (184)
Q Consensus 92 -------------~-----~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
| ..+-..+++..+-.+|.|.|.+++.-.... .+
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N-----------------------------~p 174 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN-----------------------------KP 174 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc-----------------------------CH
Confidence 1 111234667777788889999888442211 36
Q ss_pred HHHHHHHHHcCCceeEEEe
Q 030025 154 HEFTTLATEAGFSGIRFVC 172 (184)
Q Consensus 154 ~~~~~~l~~aGf~~i~~~~ 172 (184)
+++.+.++.-||.....+.
T Consensus 175 ~ei~k~l~~~g~~~~~~~~ 193 (209)
T KOG3191|consen 175 KEILKILEKKGYGVRIAMQ 193 (209)
T ss_pred HHHHHHHhhcccceeEEEE
Confidence 7888888999988665543
No 182
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.79 E-value=1.2e-08 Score=81.63 Aligned_cols=109 Identities=17% Similarity=0.195 Sum_probs=70.4
Q ss_pred HHhHHHHHHHhcCCC----CCCeEEEecCCcChHHHHHHhhC----CCCeEEEeec-hhHhhhCC------CC-CCceEE
Q 030025 6 TLVLQKILEAYKGFE----HIKQLVDVGGSLGNTLKAITSKY----PHIKGINFDL-PHVIQHSP------EY-PGVKHV 69 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~----~~~~ilDiG~G~G~~~~~l~~~~----~~~~~~~~D~-~~~~~~a~------~~-~~i~~~ 69 (184)
..+...+.+... -. ++..|+|||||+|-++...++.. ...++.+++. +.+....+ .. ++|+++
T Consensus 168 ~AI~~al~D~~~-~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi 246 (448)
T PF05185_consen 168 RAIEEALKDRVR-KNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVI 246 (448)
T ss_dssp HHHHHHHHHHHT-TS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEE
T ss_pred HHHHHHHHhhhh-hccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEE
Confidence 344555555544 22 25789999999999987766553 3579999997 55443321 11 689999
Q ss_pred EcccCc-cCCCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEE
Q 030025 70 GGDMFQ-SVPNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVI 115 (184)
Q Consensus 70 ~~d~~~-~~~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~ 115 (184)
.+|+++ ..|.. |+||+...-.....+-..++|....|.|||||.++
T Consensus 247 ~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 247 HGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 999998 56655 99999665433233333467899999999998865
No 183
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.79 E-value=2.3e-08 Score=74.09 Aligned_cols=104 Identities=20% Similarity=0.225 Sum_probs=81.5
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-cCCCC--CEEE
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-SVPNG--DAIL 84 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~~~--D~i~ 84 (184)
+..+++..+ ....++|+|||.|.++. .+|.+..++.|+ ...+.-+++.........|+.+ +.+.. |.++
T Consensus 36 v~qfl~~~~---~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~l 108 (293)
T KOG1331|consen 36 VRQFLDSQP---TGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAAL 108 (293)
T ss_pred HHHHHhccC---CcceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccch
Confidence 445555544 47899999999998773 358889999999 7777777765544778899988 66554 9999
Q ss_pred echhhhcCChH-HHHHHHHHHHhhCCCCcEEEEEee
Q 030025 85 IKWILHDWSDE-HCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 85 ~~~~l~~~~~~-~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+..++||+... ....+++++.+.++|||..++.-.
T Consensus 109 siavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 109 SIAVIHHLSTRERRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 99999998744 455899999999999999877543
No 184
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.79 E-value=1.9e-08 Score=76.14 Aligned_cols=94 Identities=17% Similarity=0.160 Sum_probs=75.1
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-------CCceEEEcccCc-cCCCC-CEEEechhhhc
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-------PGVKHVGGDMFQ-SVPNG-DAILIKWILHD 91 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-------~~i~~~~~d~~~-~~~~~-D~i~~~~~l~~ 91 (184)
.++.|||+|||+|-++...++.. ..++..++.++|.+.|++. .+|..+.+-+++ .+|+. |+|++.-.-.-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~m 255 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYM 255 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhh
Confidence 46889999999999998777764 4588999989999998874 678999999998 78876 99998665555
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEE
Q 030025 92 WSDEHCLKLLKNCHKSIPEGGKVI 115 (184)
Q Consensus 92 ~~~~~~~~~l~~~~~~L~pgG~l~ 115 (184)
+-.+...+-.-.++++|+|.|+.+
T Consensus 256 L~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 256 LVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred hhhHHHHHHHHHHHhhcCCCCccc
Confidence 555554555556789999999976
No 185
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.79 E-value=3.2e-08 Score=76.24 Aligned_cols=100 Identities=9% Similarity=-0.004 Sum_probs=67.3
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-c--CC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-S--VP 78 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~--~~ 78 (184)
.+.+.+.+. ..+..+|||+|||+|.++..+++. ..+++++|. +.+++.|++. ++++++.+|+.+ . ..
T Consensus 162 ~~~v~~~l~-~~~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~ 238 (315)
T PRK03522 162 YATARDWVR-ELPPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQG 238 (315)
T ss_pred HHHHHHHHH-hcCCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcC
Confidence 334444444 334689999999999999999985 468999999 8999888754 478999999976 2 22
Q ss_pred CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 79 NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 79 ~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
.. |+|++.-.-.-.. + .+++.+ ..++|++.+++
T Consensus 239 ~~~D~Vv~dPPr~G~~-~---~~~~~l-~~~~~~~ivyv 272 (315)
T PRK03522 239 EVPDLVLVNPPRRGIG-K---ELCDYL-SQMAPRFILYS 272 (315)
T ss_pred CCCeEEEECCCCCCcc-H---HHHHHH-HHcCCCeEEEE
Confidence 23 9999863311111 1 233333 33677766665
No 186
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.79 E-value=2.9e-08 Score=76.11 Aligned_cols=144 Identities=16% Similarity=0.191 Sum_probs=86.8
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---C-----CceEEE-cc---cCccC--CC-C-CEE
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---P-----GVKHVG-GD---MFQSV--PN-G-DAI 83 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~-----~i~~~~-~d---~~~~~--~~-~-D~i 83 (184)
+..++||||||+|.+...++.+.+.++++++|+ +.+++.|++. + ++.+.. .| +.... +. . |+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 568999999999999988888888999999999 9999988764 2 455543 22 22221 22 2 999
Q ss_pred EechhhhcCChHH---HHHHHHHHH----------------hhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhh
Q 030025 84 LIKWILHDWSDEH---CLKLLKNCH----------------KSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQ 144 (184)
Q Consensus 84 ~~~~~l~~~~~~~---~~~~l~~~~----------------~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (184)
+|+=.+|.-..+. ...-.+.+. .++.+||.+-+......... ....-..+..
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~---------~~~~~~gwft 264 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESK---------AFAKQVLWFT 264 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHH---------HHHhhCcEEE
Confidence 9988877532221 112233332 33445666555444332210 0000000000
Q ss_pred CCCccccCHHHHHHHHHHcCCceeEEEee
Q 030025 145 YPGGKERTKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
+--++.-+.+.+.+.|++.|...+.+...
T Consensus 265 smv~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 265 SLVSKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred EEeeccCCHHHHHHHHHHcCCceEEEEEE
Confidence 11133448999999999999977776654
No 187
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.77 E-value=4.5e-08 Score=69.01 Aligned_cols=101 Identities=18% Similarity=0.119 Sum_probs=64.3
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC---------CCceEEEcccCcc-----CC-C-CCE
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY---------PGVKHVGGDMFQS-----VP-N-GDA 82 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~---------~~i~~~~~d~~~~-----~~-~-~D~ 82 (184)
..+..+|||+|||+|..+..++...+..+++..|.++.++..+.+ .++.+...|--++ .+ . .|+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 457789999999999999988888667899999984465544332 4566666654221 22 2 399
Q ss_pred EEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 83 ILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 83 i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
|+.+.+++.- +....+++-+.++|+|+|.+++....+
T Consensus 123 IlasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 9999999963 344589999999999999977766544
No 188
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.77 E-value=2.1e-08 Score=81.79 Aligned_cols=98 Identities=13% Similarity=0.151 Sum_probs=70.7
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhC-CC-----CCCceEEEcccCc---cCCCC--CEEEechh
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHS-PE-----YPGVKHVGGDMFQ---SVPNG--DAILIKWI 88 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a-~~-----~~~i~~~~~d~~~---~~~~~--D~i~~~~~ 88 (184)
....+||||||.|.++..++..+|+..++|+|. ...+..+ ++ ..|+.+...|+.. .+++. |.|++++.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 457899999999999999999999999999997 4433322 21 2678888887743 45544 88887554
Q ss_pred hhcCC------hHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 89 LHDWS------DEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 89 l~~~~------~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
==|.. .--...+++.+.+.|+|||.+.+.+
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 22110 0011268999999999999999855
No 189
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.76 E-value=9e-08 Score=70.61 Aligned_cols=112 Identities=12% Similarity=0.130 Sum_probs=78.1
Q ss_pred HHhHHHHHHHhcC--CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc
Q 030025 6 TLVLQKILEAYKG--FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ 75 (184)
Q Consensus 6 ~~~~~~l~~~~~~--~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~ 75 (184)
..++..+++.+.. ..+...|||+|||+|..+..++.-.|+++++++|. +.++..|.++ .++..+..++..
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~ 210 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES 210 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc
Confidence 4456666666552 23445899999999999999999999999999999 7788877664 567777555543
Q ss_pred ----cC--CCC--CEEEechhhhcC-------------------------ChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 76 ----SV--PNG--DAILIKWILHDW-------------------------SDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 76 ----~~--~~~--D~i~~~~~l~~~-------------------------~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+. ..+ |+++++-.. -. ..+....++.-+.|.|+|||.+.+.-
T Consensus 211 d~~~~~~l~~~~~dllvsNPPY-I~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 211 DASDEHPLLEGKIDLLVSNPPY-IRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred ccccccccccCceeEEecCCCc-ccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 22 122 777774321 00 12234467778889999999988844
No 190
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=1.1e-07 Score=70.44 Aligned_cols=88 Identities=16% Similarity=0.291 Sum_probs=67.1
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC----CCCceEEEcccCc-cCC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE----YPGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~ 78 (184)
+..+++++++... ..+...|+|||+|.|.+|..|+++.. +++++++ +.+++..++ .++++.+.+|+.+ +++
T Consensus 15 d~~v~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 15 DKNVIDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFP 91 (259)
T ss_pred CHHHHHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcch
Confidence 4567899999998 77789999999999999999999965 4666665 666655544 3789999999998 777
Q ss_pred C--C-CEEEechhhhcCChHH
Q 030025 79 N--G-DAILIKWILHDWSDEH 96 (184)
Q Consensus 79 ~--~-D~i~~~~~l~~~~~~~ 96 (184)
. . +.|++ +.-++++.+-
T Consensus 92 ~l~~~~~vVa-NlPY~Isspi 111 (259)
T COG0030 92 SLAQPYKVVA-NLPYNISSPI 111 (259)
T ss_pred hhcCCCEEEE-cCCCcccHHH
Confidence 4 3 66655 4445566553
No 191
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.72 E-value=7.4e-09 Score=82.22 Aligned_cols=109 Identities=19% Similarity=0.255 Sum_probs=71.6
Q ss_pred HHHHHHHhcC---CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEee---c-hhHhhhCCCCCCceEEEccc-Cc--cCC
Q 030025 9 LQKILEAYKG---FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFD---L-PHVIQHSPEYPGVKHVGGDM-FQ--SVP 78 (184)
Q Consensus 9 ~~~l~~~~~~---~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D---~-~~~~~~a~~~~~i~~~~~d~-~~--~~~ 78 (184)
++.|.+-++. -+....+||+|||+|.++.+|+++. +..+.+- . +...+.|-++ ++....+-+ .+ |+|
T Consensus 102 id~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~--V~t~s~a~~d~~~~qvqfaleR-Gvpa~~~~~~s~rLPfp 178 (506)
T PF03141_consen 102 IDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERN--VTTMSFAPNDEHEAQVQFALER-GVPAMIGVLGSQRLPFP 178 (506)
T ss_pred HHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCC--ceEEEcccccCCchhhhhhhhc-CcchhhhhhccccccCC
Confidence 3344455541 2456889999999999999999983 4333332 2 2333333322 233333333 22 777
Q ss_pred CC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 79 NG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 79 ~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
.. |+|.|+.++-.|...+ ..+|-++.|+|+|||+++++.+-.
T Consensus 179 ~~~fDmvHcsrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 179 SNAFDMVHCSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred ccchhhhhcccccccchhcc-cceeehhhhhhccCceEEecCCcc
Confidence 65 9999988888876544 368899999999999999976544
No 192
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.65 E-value=3.4e-08 Score=73.39 Aligned_cols=112 Identities=17% Similarity=0.299 Sum_probs=80.6
Q ss_pred HhHHHHHHHhcC--CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEccc
Q 030025 7 LVLQKILEAYKG--FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGDM 73 (184)
Q Consensus 7 ~~~~~l~~~~~~--~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d~ 73 (184)
....+++.+.+. .+.+++||-||.|.|..++.+++..+..+++.+|+ +.+++.|+++ ++++++..|.
T Consensus 60 ~~y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg 139 (246)
T PF01564_consen 60 FIYHEMLVHPPLLLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDG 139 (246)
T ss_dssp HHHHHHHHHHHHHHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTH
T ss_pred HHHHHHHhhhHhhcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhh
Confidence 344455554441 34689999999999999999998766779999999 8898888763 6899999999
Q ss_pred Cc---cCCC--CCEEEechhhhcCChH--HHHHHHHHHHhhCCCCcEEEEEe
Q 030025 74 FQ---SVPN--GDAILIKWILHDWSDE--HCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 74 ~~---~~~~--~D~i~~~~~l~~~~~~--~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
.. .... +|+|++-..--.-+.. -..++++.+++.|+|||.+++..
T Consensus 140 ~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 140 RKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp HHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 76 2333 4999884332111111 02378999999999999999865
No 193
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=98.63 E-value=3.1e-07 Score=64.49 Aligned_cols=142 Identities=15% Similarity=0.105 Sum_probs=88.9
Q ss_pred HHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeechhH-----------hhhCCC--CCCceEEEcccCc-cC
Q 030025 13 LEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDLPHV-----------IQHSPE--YPGVKHVGGDMFQ-SV 77 (184)
Q Consensus 13 ~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~~~~-----------~~~a~~--~~~i~~~~~d~~~-~~ 77 (184)
+.... +++..+|+|+=.|.|++++-++... |...+.++-..+. -..+++ +.|++.+..+... ..
T Consensus 41 L~FaG-lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~ 119 (238)
T COG4798 41 LAFAG-LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGA 119 (238)
T ss_pred eEEec-cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCC
Confidence 33444 7889999999999999999888773 4444444431111 111111 1455555555554 33
Q ss_pred CCC-CEEEechhhh---c--CChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCcccc
Q 030025 78 PNG-DAILIKWILH---D--WSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKER 151 (184)
Q Consensus 78 ~~~-D~i~~~~~l~---~--~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (184)
++. |++.....-| . +....+.++...+++.|||||.+++.|+........ .+ +...++.
T Consensus 120 pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~---------~d------t~~~~ri 184 (238)
T COG4798 120 PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGL---------SD------TITLHRI 184 (238)
T ss_pred CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCCh---------hh------hhhhccc
Confidence 333 7765533222 2 234455689999999999999999999876432111 11 1123345
Q ss_pred CHHHHHHHHHHcCCceeEE
Q 030025 152 TKHEFTTLATEAGFSGIRF 170 (184)
Q Consensus 152 ~~~~~~~~l~~aGf~~i~~ 170 (184)
+...+.+-.+.+||+..-.
T Consensus 185 ~~a~V~a~veaaGFkl~ae 203 (238)
T COG4798 185 DPAVVIAEVEAAGFKLEAE 203 (238)
T ss_pred ChHHHHHHHHhhcceeeee
Confidence 7888999999999997644
No 194
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.59 E-value=4.9e-07 Score=64.62 Aligned_cols=109 Identities=14% Similarity=0.054 Sum_probs=69.8
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc-
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS- 76 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~- 76 (184)
+.+...+.+.+...-...++||++||+|.++..++++.. ..++++|. +.+++.++++ .+++++.+|+.+.
T Consensus 34 ~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l 112 (189)
T TIGR00095 34 RVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRAL 112 (189)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHH
Confidence 344445555553223568999999999999999999864 38999998 7777766653 3678999999651
Q ss_pred --C--CC-C-CEEEechhhhcCChHHHHHHHHHHH--hhCCCCcEEEEEe
Q 030025 77 --V--PN-G-DAILIKWILHDWSDEHCLKLLKNCH--KSIPEGGKVIVVE 118 (184)
Q Consensus 77 --~--~~-~-D~i~~~~~l~~~~~~~~~~~l~~~~--~~L~pgG~l~i~~ 118 (184)
. .. . |+|+..=.+.. .. ...+++.+. .+|+++|.+++..
T Consensus 113 ~~~~~~~~~~dvv~~DPPy~~-~~--~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 113 KFLAKKPTFDNVIYLDPPFFN-GA--LQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred HHhhccCCCceEEEECcCCCC-Cc--HHHHHHHHHHCCCCCCCeEEEEEe
Confidence 1 12 2 55555333322 11 124455443 4688888766643
No 195
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.57 E-value=8.4e-08 Score=71.19 Aligned_cols=92 Identities=16% Similarity=0.126 Sum_probs=61.5
Q ss_pred eEEEcccCc--cC------CC-CCEEEechhhhcCC--hHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchh
Q 030025 67 KHVGGDMFQ--SV------PN-GDAILIKWILHDWS--DEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINS 135 (184)
Q Consensus 67 ~~~~~d~~~--~~------~~-~D~i~~~~~l~~~~--~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~ 135 (184)
.++..|..+ ++ |. .|+|++.++++... .++....++++.++|||||.|++........ .
T Consensus 137 ~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~----------Y 206 (256)
T PF01234_consen 137 QVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY----------Y 206 (256)
T ss_dssp EEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE----------E
T ss_pred eEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee----------E
Confidence 366788876 33 22 49999999998864 5577799999999999999999988654331 0
Q ss_pred hhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEe
Q 030025 136 LADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVC 172 (184)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~ 172 (184)
..+-. ....-..+.+.+.+.++++||.+++...
T Consensus 207 ~vG~~----~F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 207 MVGGH----KFPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp EETTE----EEE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred EECCE----ecccccCCHHHHHHHHHHcCCEEEeccc
Confidence 10000 0011234899999999999999888875
No 196
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.57 E-value=4.7e-07 Score=71.38 Aligned_cols=91 Identities=8% Similarity=-0.016 Sum_probs=65.7
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCcc---CCC-CCEEEechh
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQS---VPN-GDAILIKWI 88 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~---~~~-~D~i~~~~~ 88 (184)
.+..+|||++||+|.++..++.. ..+++++|. +.+++.|+++ .++++..+|+.+. ... .|+|++.=.
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP 309 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP 309 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC
Confidence 34579999999999999999865 468999999 8888887764 4789999998762 212 399888544
Q ss_pred hhcCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 89 LHDWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 89 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
--.+. ..+++.+. .++|++.++++
T Consensus 310 r~G~~----~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 310 RRGIG----KELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred CCCCc----HHHHHHHH-hcCCCeEEEEE
Confidence 22111 24556554 47898877773
No 197
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.56 E-value=1.6e-06 Score=62.58 Aligned_cols=144 Identities=13% Similarity=0.161 Sum_probs=94.5
Q ss_pred HHhHHHHHHH---hcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-h----hHhhhCCCCCCceEEEcccCcc
Q 030025 6 TLVLQKILEA---YKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-P----HVIQHSPEYPGVKHVGGDMFQS 76 (184)
Q Consensus 6 ~~~~~~l~~~---~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~----~~~~~a~~~~~i~~~~~d~~~~ 76 (184)
+.++..++.- ++ +.++.+||-+|..+|.+...++.-. +...+.+++. + +.+..|++++|+-.+..|+..|
T Consensus 56 SKLaAai~~Gl~~~~-ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P 134 (229)
T PF01269_consen 56 SKLAAAILKGLENIP-IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHP 134 (229)
T ss_dssp -HHHHHHHTT-S--S---TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSG
T ss_pred hHHHHHHHcCccccC-CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCCh
Confidence 4455555443 44 7789999999999999999999884 5778899986 4 6778888899999999999874
Q ss_pred C------CCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccc
Q 030025 77 V------PNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKE 150 (184)
Q Consensus 77 ~------~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (184)
. +..|+|++.-+ + ++++.-+..++...||+||.+++.-....-+..... .
T Consensus 135 ~~Y~~lv~~VDvI~~DVa-Q---p~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p-------~------------- 190 (229)
T PF01269_consen 135 EKYRMLVEMVDVIFQDVA-Q---PDQARIAALNARHFLKPGGHLIISIKARSIDSTADP-------E------------- 190 (229)
T ss_dssp GGGTTTS--EEEEEEE-S-S---TTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSH-------H-------------
T ss_pred HHhhcccccccEEEecCC-C---hHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCH-------H-------------
Confidence 2 22288887544 2 234556788888999999999986433211100000 0
Q ss_pred cCHHHHHHHHHHcCCceeEEEeec
Q 030025 151 RTKHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 151 ~~~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
-.-++-.+.|++.||++++...+.
T Consensus 191 ~vf~~e~~~L~~~~~~~~e~i~Le 214 (229)
T PF01269_consen 191 EVFAEEVKKLKEEGFKPLEQITLE 214 (229)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEE-T
T ss_pred HHHHHHHHHHHHcCCChheEeccC
Confidence 011233466788899999888774
No 198
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.55 E-value=5.4e-07 Score=63.88 Aligned_cols=112 Identities=13% Similarity=0.135 Sum_probs=76.4
Q ss_pred ccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCe---------EEEeec-hhHhhhCCCC-------CCc
Q 030025 4 HTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIK---------GINFDL-PHVIQHSPEY-------PGV 66 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~---------~~~~D~-~~~~~~a~~~-------~~i 66 (184)
....++..|+.... +.+...|+|-=||+|.+....+.....+. ++|.|+ +.+++.|+++ ..+
T Consensus 12 L~~~lA~~ll~la~-~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i 90 (179)
T PF01170_consen 12 LRPTLAAALLNLAG-WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI 90 (179)
T ss_dssp S-HHHHHHHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred CCHHHHHHHHHHhC-CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence 44567777887776 88889999999999999998887766666 899999 8898888764 357
Q ss_pred eEEEcccCc-cCCC-C-CEEEechhhhcC-ChH-----HHHHHHHHHHhhCCCCcEEEE
Q 030025 67 KHVGGDMFQ-SVPN-G-DAILIKWILHDW-SDE-----HCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 67 ~~~~~d~~~-~~~~-~-D~i~~~~~l~~~-~~~-----~~~~~l~~~~~~L~pgG~l~i 116 (184)
.+..+|+.+ +... . |+|++.-....- ... -...+++++.+.++|...+++
T Consensus 91 ~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 91 DFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp EEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred EEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 899999998 5333 3 999997766652 221 123567888999999434333
No 199
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=9.4e-06 Score=57.56 Aligned_cols=144 Identities=13% Similarity=0.147 Sum_probs=100.6
Q ss_pred HHhHHHHHHH---hcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-----hhHhhhCCCCCCceEEEcccCccC
Q 030025 6 TLVLQKILEA---YKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-----PHVIQHSPEYPGVKHVGGDMFQSV 77 (184)
Q Consensus 6 ~~~~~~l~~~---~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-----~~~~~~a~~~~~i~~~~~d~~~~~ 77 (184)
+.++..+++- ++ ++++.+||=+|..+|.+...++.-.++..+.+++. .+.+..|++++|+-.+..|+..|.
T Consensus 59 SKLaAaIl~Gl~~~p-i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~ 137 (231)
T COG1889 59 SKLAAAILKGLKNFP-IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPE 137 (231)
T ss_pred hHHHHHHHcCcccCC-cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcH
Confidence 3455555553 44 78999999999999999999999988778888874 467788899999999999998753
Q ss_pred ------CCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCcccc
Q 030025 78 ------PNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKER 151 (184)
Q Consensus 78 ------~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (184)
+.-|+|+.--+ .+.++.-+..++...||+||.++++--...-..+.... .
T Consensus 138 ~Y~~~Ve~VDviy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~-------~------------- 193 (231)
T COG1889 138 KYRHLVEKVDVIYQDVA----QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPE-------E------------- 193 (231)
T ss_pred HhhhhcccccEEEEecC----CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHH-------H-------------
Confidence 22388877322 23445567778899999999888755433221111000 0
Q ss_pred CHHHHHHHHHHcCCceeEEEeec
Q 030025 152 TKHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 152 ~~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
.-++-.+.|++.||++++...+.
T Consensus 194 vf~~ev~kL~~~~f~i~e~~~Le 216 (231)
T COG1889 194 VFKDEVEKLEEGGFEILEVVDLE 216 (231)
T ss_pred HHHHHHHHHHhcCceeeEEeccC
Confidence 11223456788999999888764
No 200
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.52 E-value=3.8e-07 Score=67.28 Aligned_cols=80 Identities=18% Similarity=0.316 Sum_probs=64.8
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-c
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-S 76 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~ 76 (184)
..+++.|++..+ +.++..|||||.|||.++..|+++. .++++++. +.|+....++ ...++.++|+.+ +
T Consensus 44 p~v~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 44 PLVIDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD 120 (315)
T ss_pred HHHHHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC
Confidence 356778888887 9999999999999999999999984 57788887 8888776654 468999999998 6
Q ss_pred CCCCCEEEechh
Q 030025 77 VPNGDAILIKWI 88 (184)
Q Consensus 77 ~~~~D~i~~~~~ 88 (184)
+|-.|.++++..
T Consensus 121 ~P~fd~cVsNlP 132 (315)
T KOG0820|consen 121 LPRFDGCVSNLP 132 (315)
T ss_pred CcccceeeccCC
Confidence 666687776433
No 201
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.48 E-value=2.2e-06 Score=61.92 Aligned_cols=123 Identities=17% Similarity=0.168 Sum_probs=86.7
Q ss_pred EEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCCC---CCEEEechhhhcCC
Q 030025 25 LVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVPN---GDAILIKWILHDWS 93 (184)
Q Consensus 25 ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~~---~D~i~~~~~l~~~~ 93 (184)
|.||||-.|++...|++.....+++++|+ +.-++.|++. .++++..+|=.+.++. .|+|++.++-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG--- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG--- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-H---
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCH---
Confidence 68999999999999999988788999999 8888877653 6799999997774433 38888877644
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEee
Q 030025 94 DEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 94 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
.-..++|++....+++...|++.-. .....++++|.+.||..++..-.
T Consensus 78 -~lI~~ILe~~~~~~~~~~~lILqP~-------------------------------~~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 78 -ELIIEILEAGPEKLSSAKRLILQPN-------------------------------THAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp -HHHHHHHHHTGGGGTT--EEEEEES-------------------------------S-HHHHHHHHHHTTEEEEEEEEE
T ss_pred -HHHHHHHHhhHHHhccCCeEEEeCC-------------------------------CChHHHHHHHHHCCCEEEEeEEE
Confidence 4456788888887776667776221 14688899999999999876654
Q ss_pred c---CceEEEEE
Q 030025 174 F---HNLWVMEF 182 (184)
Q Consensus 174 ~---~~~~~~~~ 182 (184)
. ..+.++.+
T Consensus 126 ~e~~~~YeIi~~ 137 (205)
T PF04816_consen 126 EENGRFYEIIVA 137 (205)
T ss_dssp EETTEEEEEEEE
T ss_pred eECCEEEEEEEE
Confidence 3 34445544
No 202
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.48 E-value=4.5e-07 Score=68.86 Aligned_cols=80 Identities=20% Similarity=0.246 Sum_probs=65.5
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC----CCceEEEcccCc---cC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY----PGVKHVGGDMFQ---SV 77 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~----~~i~~~~~d~~~---~~ 77 (184)
-+.+++++.+. ..+...++|.+||.|..+..+++..+ +.+++++|. +.+++.+++. .++.++++|+.+ ..
T Consensus 6 Vll~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 6 VLLDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred ccHHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHH
Confidence 35788899987 77888999999999999999999985 789999999 9999888764 479999999876 12
Q ss_pred CC---C-CEEEech
Q 030025 78 PN---G-DAILIKW 87 (184)
Q Consensus 78 ~~---~-D~i~~~~ 87 (184)
+. . |.|++..
T Consensus 85 ~~~~~~vDgIl~DL 98 (296)
T PRK00050 85 AEGLGKVDGILLDL 98 (296)
T ss_pred HcCCCccCEEEECC
Confidence 22 3 8887744
No 203
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.47 E-value=4.4e-07 Score=64.40 Aligned_cols=107 Identities=21% Similarity=0.249 Sum_probs=65.4
Q ss_pred HHHHHHHhcCCC--CCCeEEEecCCcChHHHHHHhhC-CCCeEEEeechhHhhhCCCCCCceEEEcccCcc---------
Q 030025 9 LQKILEAYKGFE--HIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQS--------- 76 (184)
Q Consensus 9 ~~~l~~~~~~~~--~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~--------- 76 (184)
..++.+.++-++ +..++||+||++|.++..++++. +..+++++|+..+ ...+++.+.++|+.++
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----~~~~~~~~i~~d~~~~~~~~~i~~~ 84 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----DPLQNVSFIQGDITNPENIKDIRKL 84 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----GS-TTEEBTTGGGEEEEHSHHGGGS
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc----ccccceeeeecccchhhHHHhhhhh
Confidence 445666665343 45899999999999999999986 6789999998333 1124555555665431
Q ss_pred CC---CC-CEEEechhhhcC---------ChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 77 VP---NG-DAILIKWILHDW---------SDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 77 ~~---~~-D~i~~~~~l~~~---------~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.+ .. |+|++-.+...- .-+-....+.-+.+.|+|||.+++.-.
T Consensus 85 ~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 85 LPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp HGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred ccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 12 23 999886622111 112223445556677999999988543
No 204
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.47 E-value=1.7e-07 Score=73.05 Aligned_cols=101 Identities=17% Similarity=0.188 Sum_probs=81.5
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cCCCC--CEEEech
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SVPNG--DAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~~~~--D~i~~~~ 87 (184)
..+...++|+|||.|.....+.. +..+..+|+|. +..+.++... +...++..|+.+ ++++. |.+.+..
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred CcccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 44556899999999999998776 45678899998 6555555432 456668899988 77765 9999999
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecC
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLP 122 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 122 (184)
+.+|.++.+ .++++++++++|||.++..+....
T Consensus 187 ~~~~~~~~~--~~y~Ei~rv~kpGG~~i~~e~i~~ 219 (364)
T KOG1269|consen 187 VVCHAPDLE--KVYAEIYRVLKPGGLFIVKEWIKT 219 (364)
T ss_pred ecccCCcHH--HHHHHHhcccCCCceEEeHHHHHh
Confidence 999998775 789999999999999999887654
No 205
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.46 E-value=1.1e-06 Score=69.41 Aligned_cols=107 Identities=15% Similarity=0.093 Sum_probs=78.6
Q ss_pred cHHhHHHHHHHhcCCC-CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCcc
Q 030025 5 TTLVLQKILEAYKGFE-HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQS 76 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~-~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~ 76 (184)
.+.+...+++.+. .. +..+|||++||+|..+..++...+...++++|+ +.+++.++++ .++.+...|+...
T Consensus 41 nrdl~~~v~~~~~-~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~ 119 (382)
T PRK04338 41 NRDISVLVLRAFG-PKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL 119 (382)
T ss_pred hhhHHHHHHHHHH-hhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH
Confidence 4455556666654 22 346899999999999999998876568999999 8888888764 3466888888652
Q ss_pred C--CC-CCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 77 V--PN-GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 77 ~--~~-~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
. .. .|+|++.- + ..+ ..+++.+.+.++|||.+.++-
T Consensus 120 l~~~~~fD~V~lDP-~---Gs~--~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 120 LHEERKFDVVDIDP-F---GSP--APFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred HhhcCCCCEEEECC-C---CCc--HHHHHHHHHHhcCCCEEEEEe
Confidence 2 22 39998843 2 222 257888788899999999983
No 206
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=7.2e-06 Score=58.70 Aligned_cols=109 Identities=20% Similarity=0.218 Sum_probs=77.5
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeechhHhhhCCCCCCceEEEcccCc-c--------CC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQ-S--------VP 78 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~--------~~ 78 (184)
..+|.+.+.-+.+...|+|+|+-.|.++..+++.. +...++++|+..|- ..+++.++++|++. + ++
T Consensus 33 L~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----~~~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 33 LLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----PIPGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred HHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----cCCCceEEeeeccCccHHHHHHHHcC
Confidence 45566666657888999999999999999998885 45669999984442 23679999999987 2 13
Q ss_pred CC--CEEEechhh--------hcCC-hHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 79 NG--DAILIKWIL--------HDWS-DEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 79 ~~--D~i~~~~~l--------~~~~-~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
.. |+|++-.+- +|.- -.-....++-+...|+|||.+++-....
T Consensus 109 ~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred CCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 32 888864332 3321 1122355677778999999999976544
No 207
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.42 E-value=8.9e-07 Score=62.85 Aligned_cols=93 Identities=13% Similarity=0.222 Sum_probs=69.0
Q ss_pred CCCCC-eEEEecCCcChHHHHHHhhCCCCeEEEeec-h---hHhhhCCC---CCCceEEEcccCc-cCCCC-CEEEechh
Q 030025 19 FEHIK-QLVDVGGSLGNTLKAITSKYPHIKGINFDL-P---HVIQHSPE---YPGVKHVGGDMFQ-SVPNG-DAILIKWI 88 (184)
Q Consensus 19 ~~~~~-~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~---~~~~~a~~---~~~i~~~~~d~~~-~~~~~-D~i~~~~~ 88 (184)
++... +++|||+|.|--+..++=.+|+.+++.+|. . .+++.+.. .+|++++...+++ ..... |+|++..+
T Consensus 45 ~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 45 LPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAV 124 (184)
T ss_dssp S-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESS
T ss_pred hccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehh
Confidence 34444 899999999999999999999999999995 3 23333322 2789999999988 33333 99999776
Q ss_pred hhcCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 89 LHDWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 89 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
-. - ..+++-+.+.++|||.+++.
T Consensus 125 ~~----l--~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 125 AP----L--DKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp SS----H--HHHHHHHGGGEEEEEEEEEE
T ss_pred cC----H--HHHHHHHHHhcCCCCEEEEE
Confidence 42 2 36899999999999999984
No 208
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.41 E-value=4.8e-07 Score=70.78 Aligned_cols=65 Identities=11% Similarity=0.075 Sum_probs=50.1
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ 75 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~ 75 (184)
.+...+++.+. ..+ .+|||++||+|.++..+++.. .+++++|. +.+++.++++ .+++++.+|+.+
T Consensus 185 ~l~~~v~~~~~-~~~-~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 185 KMLEWACEVTQ-GSK-GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred HHHHHHHHHhh-cCC-CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 34445555544 323 479999999999999888876 38999999 8999888764 468899999875
No 209
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.41 E-value=1.5e-05 Score=61.24 Aligned_cols=110 Identities=13% Similarity=0.124 Sum_probs=80.7
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEc-ccCc-cC
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGG-DMFQ-SV 77 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~-d~~~-~~ 77 (184)
.+++.+.+... ..++..|||-=||||.++....-. +++++|.|+ ..|++-++.+ ....+... |+.+ ++
T Consensus 184 ~lAR~mVNLa~-v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl 260 (347)
T COG1041 184 RLARAMVNLAR-VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPL 260 (347)
T ss_pred HHHHHHHHHhc-cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCC
Confidence 34555555555 778889999999999999877665 789999999 8899888875 34444444 8887 77
Q ss_pred CCC--CEEEechhhhc------CC-hHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 78 PNG--DAILIKWILHD------WS-DEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 78 ~~~--D~i~~~~~l~~------~~-~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
++. |.|++--...- -. ++-..++|+.+.++|++||++++..+
T Consensus 261 ~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 261 RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 764 99887322211 11 23355889999999999999999554
No 210
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.39 E-value=1.5e-06 Score=62.84 Aligned_cols=89 Identities=17% Similarity=0.243 Sum_probs=70.1
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-h---hHhhhCCCC---CCceEEEcccCc-c-CCC-CCEEEechhhhc
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-P---HVIQHSPEY---PGVKHVGGDMFQ-S-VPN-GDAILIKWILHD 91 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~---~~~~~a~~~---~~i~~~~~d~~~-~-~~~-~D~i~~~~~l~~ 91 (184)
..+++|||+|.|--+..++=.+|+.+++-+|. . .+++.+.+. +|++++++.+++ . ... +|+|++..+-.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 68999999999999999998899999999994 2 344444332 789999999987 2 234 79999977642
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 92 WSDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 92 ~~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
...+++-+..++++||.++.
T Consensus 147 -----L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 147 -----LNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred -----hHHHHHHHHHhcccCCcchh
Confidence 23678888999999998765
No 211
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.36 E-value=7.2e-07 Score=63.39 Aligned_cols=159 Identities=16% Similarity=0.187 Sum_probs=91.9
Q ss_pred cccHHhHHHHHHHh-cCCC-CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCC
Q 030025 3 NHTTLVLQKILEAY-KGFE-HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPN 79 (184)
Q Consensus 3 ~~~~~~~~~l~~~~-~~~~-~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~ 79 (184)
-++..-.++++..= +.++ .+.++||+|+|.|.++..++..+.+ +.+.++ ..|..+.++.. .... ...+....
T Consensus 92 ifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~kk~-ynVl--~~~ew~~t 166 (288)
T KOG3987|consen 92 IFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKKKN-YNVL--TEIEWLQT 166 (288)
T ss_pred EecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhhcC-Ccee--eehhhhhc
Confidence 34445555555543 2222 4589999999999999999988754 455555 67877765542 1111 11111122
Q ss_pred ---CCEEEechhhhcCChHHHHHHHHHHHhhCCC-CcEEEEEeeec--CCCCCCCccccchhhhhhHhhhhCCCcccc--
Q 030025 80 ---GDAILIKWILHDWSDEHCLKLLKNCHKSIPE-GGKVIVVESVL--PELPENGTHSKINSLADVLVMTQYPGGKER-- 151 (184)
Q Consensus 80 ---~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~p-gG~l~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 151 (184)
.|+|.|.+.+..--++ .++|+.+..+|+| +|+++++-... +............ -.++.. -.|+.+
T Consensus 167 ~~k~dli~clNlLDRc~~p--~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~r-Pdn~Le----~~Gr~~ee 239 (288)
T KOG3987|consen 167 DVKLDLILCLNLLDRCFDP--FKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLR-PDNLLE----NNGRSFEE 239 (288)
T ss_pred CceeehHHHHHHHHhhcCh--HHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCC-chHHHH----hcCccHHH
Confidence 2999999998864444 4899999999999 89988753211 1111110000000 000000 022222
Q ss_pred CHHHHHHHHHHcCCceeEEEee
Q 030025 152 TKHEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 152 ~~~~~~~~l~~aGf~~i~~~~~ 173 (184)
..+.+.++|+++||.+.-.-+.
T Consensus 240 ~v~~~~e~lr~~g~~veawTrl 261 (288)
T KOG3987|consen 240 EVARFMELLRNCGYRVEAWTRL 261 (288)
T ss_pred HHHHHHHHHHhcCchhhhhhcC
Confidence 4567889999999997654443
No 212
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.36 E-value=2e-06 Score=64.68 Aligned_cols=98 Identities=15% Similarity=0.271 Sum_probs=72.1
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC----CCCceEEEcccCc-cCC
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE----YPGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~~ 78 (184)
+..+++++++.+. ..+...|+|||+|+|.+|..+++.. .++++++. +.+.+..++ .++++++.+|+.+ +.+
T Consensus 15 ~~~~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 15 DPNIADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGG
T ss_pred CHHHHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccH
Confidence 5678999999998 8899999999999999999999987 68888887 766665554 4789999999998 444
Q ss_pred C----C-CEEEechhhhcCChHHHHHHHHHHHhhCCC
Q 030025 79 N----G-DAILIKWILHDWSDEHCLKLLKNCHKSIPE 110 (184)
Q Consensus 79 ~----~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~p 110 (184)
. . ..|+.+.. ++++. .++.++...-+.
T Consensus 92 ~~~~~~~~~vv~NlP-y~is~----~il~~ll~~~~~ 123 (262)
T PF00398_consen 92 DLLKNQPLLVVGNLP-YNISS----PILRKLLELYRF 123 (262)
T ss_dssp GHCSSSEEEEEEEET-GTGHH----HHHHHHHHHGGG
T ss_pred HhhcCCceEEEEEec-ccchH----HHHHHHhhcccc
Confidence 3 3 45555433 34432 466666664444
No 213
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.35 E-value=5.9e-06 Score=66.77 Aligned_cols=100 Identities=16% Similarity=0.226 Sum_probs=70.1
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC------CCceEEEcccCc---cCCCC-CEEEe-
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ---SVPNG-DAILI- 85 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~---~~~~~-D~i~~- 85 (184)
.++..+|||+++|.|.-+..+++... ...+++.|+ +.-++..+++ .++.+...|... .++.. |.|++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 56789999999999999999999863 468999998 6555554432 567777777764 23344 88874
Q ss_pred ---ch--hhhc-------CChH-------HHHHHHHHHHhhCCCCcEEEEEe
Q 030025 86 ---KW--ILHD-------WSDE-------HCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 86 ---~~--~l~~-------~~~~-------~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+. ++.. +..+ -..++|+.+.+.|||||+|+-++
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 22 2221 1111 11578999999999999997653
No 214
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.31 E-value=3.9e-05 Score=57.50 Aligned_cols=147 Identities=13% Similarity=0.201 Sum_probs=91.4
Q ss_pred hHHHHHHHhcC---CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHh-------hhC---CCC----------
Q 030025 8 VLQKILEAYKG---FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVI-------QHS---PEY---------- 63 (184)
Q Consensus 8 ~~~~l~~~~~~---~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~-------~~a---~~~---------- 63 (184)
+.+.|.+.++. -....+||--|||.|.++-.++.+ +..+.+.+. -.|+ ... ++.
T Consensus 40 I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~s 117 (270)
T PF07942_consen 40 ILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFS 117 (270)
T ss_pred HHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceeccc
Confidence 34445555541 123578999999999999999998 345566653 2221 111 110
Q ss_pred --------------------------CCceEEEcccCc--cCC---CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCC
Q 030025 64 --------------------------PGVKHVGGDMFQ--SVP---NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEG 111 (184)
Q Consensus 64 --------------------------~~i~~~~~d~~~--~~~---~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pg 111 (184)
.++....+|+.+ ..+ .. |+|+.++.+. ..+...+.++.+.++||||
T Consensus 118 n~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID--TA~Ni~~Yi~tI~~lLkpg 195 (270)
T PF07942_consen 118 NQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID--TAENIIEYIETIEHLLKPG 195 (270)
T ss_pred CCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee--chHHHHHHHHHHHHHhccC
Confidence 247777888877 222 23 9998875554 3345668899999999999
Q ss_pred cEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEe
Q 030025 112 GKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVC 172 (184)
Q Consensus 112 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~ 172 (184)
|.+|=..|..=..... . ......-..+.+|+.++.++.||+.++...
T Consensus 196 G~WIN~GPLlyh~~~~----------~----~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 196 GYWINFGPLLYHFEPM----------S----IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CEEEecCCccccCCCC----------C----CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 9665444332111000 0 000012345899999999999999987665
No 215
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.31 E-value=1.2e-06 Score=68.75 Aligned_cols=64 Identities=14% Similarity=0.115 Sum_probs=49.2
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ 75 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~ 75 (184)
+.+.+.+.+. .. ..+|||++||+|.++..+++.. .+++++|. +.+++.++++ .+++++.+|+.+
T Consensus 195 l~~~v~~~~~-~~-~~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 195 MLEWALDATK-GS-KGDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred HHHHHHHHhh-cC-CCeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 4444555444 22 3579999999999999888875 38999999 8899888764 478899999865
No 216
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.28 E-value=3.5e-06 Score=59.03 Aligned_cols=94 Identities=14% Similarity=0.148 Sum_probs=73.5
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc-cCCCCCEEEechhhhcCC
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ-SVPNGDAILIKWILHDWS 93 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~-~~~~~D~i~~~~~l~~~~ 93 (184)
.....|+|.|+|-++.-.++. .-++++++. |...+.|.++ .|++.+.+|+.+ .++++|+|+|...=--+-
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi 110 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALI 110 (252)
T ss_pred hhceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhh
Confidence 378999999999999876666 458899988 8888888775 679999999998 787779998854322222
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 94 DEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 94 ~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
+++.+.+++.+-..|+.+++++=.
T Consensus 111 ~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 111 EEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred cccccHHHHHHHHHhhcCCccccH
Confidence 344468899999999999998743
No 217
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.26 E-value=7e-06 Score=55.90 Aligned_cols=91 Identities=18% Similarity=0.305 Sum_probs=61.7
Q ss_pred CCCCCeEEEecCCcChHHHHHHhh----CCCCeEEEeec-hhHhhhCCCC---------CCceEEEcccCc-cCCCC-CE
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSK----YPHIKGINFDL-PHVIQHSPEY---------PGVKHVGGDMFQ-SVPNG-DA 82 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~----~~~~~~~~~D~-~~~~~~a~~~---------~~i~~~~~d~~~-~~~~~-D~ 82 (184)
..+..+|+|+|||.|+++..++.. .++.+++++|. +...+.++++ .++.+...+..+ ..... ++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 467889999999999999999982 27889999998 6666666543 345555555544 22333 77
Q ss_pred EEechhhhcCChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 83 ILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 83 i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
++..++-..+.+ .+++.+.+ |+-..++
T Consensus 103 ~vgLHaCG~Ls~----~~l~~~~~---~~~~~l~ 129 (141)
T PF13679_consen 103 LVGLHACGDLSD----RALRLFIR---PNARFLV 129 (141)
T ss_pred EEEeecccchHH----HHHHHHHH---cCCCEEE
Confidence 777666655443 45666666 5554444
No 218
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.22 E-value=1.2e-05 Score=61.83 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=67.6
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCccC--CCC-CEEEechhhhcCChH
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQSV--PNG-DAILIKWILHDWSDE 95 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~--~~~-D~i~~~~~l~~~~~~ 95 (184)
+.+..++|||||++|.++..++++ +.+++++|...|.......++|.+...|..... +.. |.++|--+-. |
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~----P 282 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK----P 282 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC----H
Confidence 357789999999999999999998 469999998667666677799999999998733 333 9999966633 3
Q ss_pred HHHHHHHHHHhhCCCC
Q 030025 96 HCLKLLKNCHKSIPEG 111 (184)
Q Consensus 96 ~~~~~l~~~~~~L~pg 111 (184)
. ++.+-+.++|..|
T Consensus 283 ~--rva~lm~~Wl~~g 296 (357)
T PRK11760 283 A--RVAELMAQWLVNG 296 (357)
T ss_pred H--HHHHHHHHHHhcC
Confidence 3 6788888898766
No 219
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.21 E-value=3e-06 Score=60.93 Aligned_cols=90 Identities=18% Similarity=0.272 Sum_probs=64.4
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCCC-C-CEEEechh
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVPN-G-DAILIKWI 88 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~~-~-D~i~~~~~ 88 (184)
..++..|+|.-||.|.++..+++..+..+++++|+ |.+.+..++. .++....+|..+-.+. . |-|++...
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 56789999999999999999999777789999999 8888776553 5688899998873323 3 98888654
Q ss_pred hhcCChHHHHHHHHHHHhhCCCCcEE
Q 030025 89 LHDWSDEHCLKLLKNCHKSIPEGGKV 114 (184)
Q Consensus 89 l~~~~~~~~~~~l~~~~~~L~pgG~l 114 (184)
-+ ...++..+.+++++||.+
T Consensus 179 ~~------~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 179 ES------SLEFLDAALSLLKEGGII 198 (200)
T ss_dssp SS------GGGGHHHHHHHEEEEEEE
T ss_pred HH------HHHHHHHHHHHhcCCcEE
Confidence 22 125788899999999876
No 220
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=6.3e-05 Score=54.82 Aligned_cols=151 Identities=16% Similarity=0.132 Sum_probs=93.6
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hh-HhhhCCCCCCceE-EEcccCc----cCCCC-
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PH-VIQHSPEYPGVKH-VGGDMFQ----SVPNG- 80 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~-~~~~a~~~~~i~~-~~~d~~~----~~~~~- 80 (184)
...+++.+.-..++..+||||+.||.++.-++++. ...+.++|. .. +.-..|+.+++.. ...++.. .+.+.
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~ 145 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKP 145 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCC
Confidence 34556666634478899999999999999988874 358899997 43 3334455566433 3444433 22223
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEE-eeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHH
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVV-ESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTL 159 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (184)
|++++--++-. ...+|-.+..+++|+|-++.. -|.++-.... ...-....-+..+..-...+.++
T Consensus 146 d~~v~DvSFIS-----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~---------v~kkGvv~d~~~~~~v~~~i~~~ 211 (245)
T COG1189 146 DLIVIDVSFIS-----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQ---------VGKKGVVRDPKLHAEVLSKIENF 211 (245)
T ss_pred CeEEEEeehhh-----HHHHHHHHHHhcCCCceEEEEecchhhhhhhh---------cCcCceecCcchHHHHHHHHHHH
Confidence 88888666652 237899999999999887762 2222221110 00000000111233456888899
Q ss_pred HHHcCCceeEEEeec
Q 030025 160 ATEAGFSGIRFVCFF 174 (184)
Q Consensus 160 l~~aGf~~i~~~~~~ 174 (184)
+++.||+...+...+
T Consensus 212 ~~~~g~~~~gl~~Sp 226 (245)
T COG1189 212 AKELGFQVKGLIKSP 226 (245)
T ss_pred HhhcCcEEeeeEccC
Confidence 999999998887653
No 221
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=4.5e-05 Score=56.57 Aligned_cols=128 Identities=15% Similarity=0.193 Sum_probs=87.9
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhh-CCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cCC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSK-YPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SVP 78 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~~ 78 (184)
...|+..+. ..+..+|+|-|.|+|.++.++++. .|..++..+|. ..-.+.|++. .++++.+.|+.. -+.
T Consensus 94 ia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 94 IAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 456777887 899999999999999999999998 58889999997 5444444432 689999999986 333
Q ss_pred C----CCEEEechhhhcCChHHHHHHHHHHHhhCCCCc-EEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCH
Q 030025 79 N----GDAILIKWILHDWSDEHCLKLLKNCHKSIPEGG-KVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTK 153 (184)
Q Consensus 79 ~----~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG-~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
. +|+|+.. ++.|. ..+--+++.||.+| +++--.+..+. .
T Consensus 173 ~ks~~aDaVFLD-----lPaPw--~AiPha~~~lk~~g~r~csFSPCIEQ-----------------------------v 216 (314)
T KOG2915|consen 173 IKSLKADAVFLD-----LPAPW--EAIPHAAKILKDEGGRLCSFSPCIEQ-----------------------------V 216 (314)
T ss_pred ccccccceEEEc-----CCChh--hhhhhhHHHhhhcCceEEeccHHHHH-----------------------------H
Confidence 2 2888873 33232 34666666888777 54443332211 1
Q ss_pred HHHHHHHHHcCCceeEEEee
Q 030025 154 HEFTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 154 ~~~~~~l~~aGf~~i~~~~~ 173 (184)
..-.+.+.+.||..++....
T Consensus 217 qrtce~l~~~gf~~i~~vEv 236 (314)
T KOG2915|consen 217 QRTCEALRSLGFIEIETVEV 236 (314)
T ss_pred HHHHHHHHhCCCceEEEEEe
Confidence 12246677888888877654
No 222
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=98.14 E-value=4.6e-05 Score=57.21 Aligned_cols=148 Identities=16% Similarity=0.097 Sum_probs=94.4
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCC---------CCCceEEEcccCccC----------CCC
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPE---------YPGVKHVGGDMFQSV----------PNG 80 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~---------~~~i~~~~~d~~~~~----------~~~ 80 (184)
.+...|+.+|||.-.....+... +++++..+|.|++++.-++ .++..++..|+...+ ++.
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 34668999999999888776432 3588999998776654322 256788888886321 122
Q ss_pred -CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHh-hhhCCCccccCHHHHHH
Q 030025 81 -DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLV-MTQYPGGKERTKHEFTT 158 (184)
Q Consensus 81 -D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 158 (184)
-++++.+++.+++.++...+|+.+.+...||+.+++.- ..+.... .............. ....+-....++.++.+
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDY-VRPLDGE-WRAGMRAPVYHAARGVDGSGLVFGIDRADVAE 236 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEe-ccccchh-HHHHHHHHHHHhhhcccccccccCCChhhHHH
Confidence 57888999999999998999999999998998887733 2221100 00000000000000 00000011347899999
Q ss_pred HHHHcCCceeEE
Q 030025 159 LATEAGFSGIRF 170 (184)
Q Consensus 159 ~l~~aGf~~i~~ 170 (184)
+|++.||+..+.
T Consensus 237 ~l~~~Gw~~~~~ 248 (260)
T TIGR00027 237 WLAERGWRASEH 248 (260)
T ss_pred HHHHCCCeeecC
Confidence 999999997754
No 223
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.14 E-value=3.9e-05 Score=52.28 Aligned_cols=95 Identities=18% Similarity=0.308 Sum_probs=65.1
Q ss_pred EEEecCCcChHHHHHHhhCCC-CeEEEeec-hhHhhhCCCCC---C---ceEEEcccCc---cCCC--C-CEEEechhhh
Q 030025 25 LVDVGGSLGNTLKAITSKYPH-IKGINFDL-PHVIQHSPEYP---G---VKHVGGDMFQ---SVPN--G-DAILIKWILH 90 (184)
Q Consensus 25 ilDiG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~~~---~---i~~~~~d~~~---~~~~--~-D~i~~~~~l~ 90 (184)
++|+|||+|... .+....+. ..++++|. +.++..++... . +.+...|... ++.. . |++.+....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999977 34444333 47888998 76666643321 1 5777777654 4443 3 8884444444
Q ss_pred cCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 91 DWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 91 ~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
+.. ....++++.+.++|+|.+++.......
T Consensus 131 ~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 131 LLP---PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred cCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 444 347899999999999999998776543
No 224
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=3.4e-06 Score=56.67 Aligned_cols=70 Identities=20% Similarity=0.225 Sum_probs=53.0
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCcc-CCCC--CEEEechhhhc
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQS-VPNG--DAILIKWILHD 91 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~~-~~~~--D~i~~~~~l~~ 91 (184)
.++.++|+|||.|.++.. ...+..-.++|+|+ +++++.++.+ -++++.+.|+.++ +... |.++++-.+.-
T Consensus 48 Egkkl~DLgcgcGmLs~a-~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIA-FSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPFGT 126 (185)
T ss_pred cCcchhhhcCchhhhHHH-hhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCCCc
Confidence 568999999999999943 33455668999999 9999998876 3578888888873 2223 88888766653
No 225
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.06 E-value=1.1e-05 Score=62.06 Aligned_cols=113 Identities=12% Similarity=0.188 Sum_probs=75.6
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhh-------CCCCeEEEeec-hhHhhhCCCC--------CCceE
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSK-------YPHIKGINFDL-PHVIQHSPEY--------PGVKH 68 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~-------~~~~~~~~~D~-~~~~~~a~~~--------~~i~~ 68 (184)
...+++.|.+.+. ..+..+|+|-+||+|.++..+.+. .+...+.|+|+ +.+...++-+ .+..+
T Consensus 31 P~~i~~l~~~~~~-~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i 109 (311)
T PF02384_consen 31 PREIVDLMVKLLN-PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINI 109 (311)
T ss_dssp -HHHHHHHHHHHT-T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEE
T ss_pred HHHHHHHHHhhhh-ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccc
Confidence 3456777777776 677789999999999999888874 36789999998 7777665421 33568
Q ss_pred EEcccCc-c-CC--CC-CEEEechhhhcC--------------------ChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 69 VGGDMFQ-S-VP--NG-DAILIKWILHDW--------------------SDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 69 ~~~d~~~-~-~~--~~-D~i~~~~~l~~~--------------------~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
..+|... + .. .. |+|+++-.+-.. ...+ ..++..+.+.|++||++.+.-+
T Consensus 110 ~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 110 IQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAE-YAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp EES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHH-HHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccccccccccccccccCCCCccccccccccccccccccccCCCccchh-hhhHHHHHhhcccccceeEEec
Confidence 8888875 3 22 22 999885443322 0112 3588999999999999877544
No 226
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.00 E-value=8e-05 Score=58.78 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=73.7
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--------CCceEEEcccCccC----C---CCCEEEe
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--------PGVKHVGGDMFQSV----P---NGDAILI 85 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------~~i~~~~~d~~~~~----~---~~D~i~~ 85 (184)
.++|||+=|=||.++...+... -.+++.||. ...++.|+++ ..+.++++|+++.+ . .+|+|++
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 8999999999999998877763 238999999 8899998875 34789999998732 1 2399987
Q ss_pred chh------hhcCC-hHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 86 KWI------LHDWS-DEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 86 ~~~------l~~~~-~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
-=. -..+. ..+...++..+.++|+|||.+++...
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 211 11111 34556899999999999999999664
No 227
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=98.00 E-value=0.00026 Score=55.77 Aligned_cols=103 Identities=22% Similarity=0.261 Sum_probs=62.5
Q ss_pred CCCeEEEecCCcChHHHHHHh--------h-------CCCCeEEEeech--hHhhhCCCCC------------------C
Q 030025 21 HIKQLVDVGGSLGNTLKAITS--------K-------YPHIKGINFDLP--HVIQHSPEYP------------------G 65 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~--------~-------~~~~~~~~~D~~--~~~~~a~~~~------------------~ 65 (184)
+..+|+|+|||+|.++..+.. + .|+.++..-|+| ++-...+..+ +
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 467899999999987755532 1 145777777752 1111111110 1
Q ss_pred ---ceEEEcccCc-cCCCC--CEEEechhhhcCCh--HH----------------------------------HHHHHHH
Q 030025 66 ---VKHVGGDMFQ-SVPNG--DAILIKWILHDWSD--EH----------------------------------CLKLLKN 103 (184)
Q Consensus 66 ---i~~~~~d~~~-~~~~~--D~i~~~~~l~~~~~--~~----------------------------------~~~~l~~ 103 (184)
+.-+.+.+.. -+|.. +++++++++|+++. ++ -..+|+-
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1223456665 56765 99999999999862 11 1123333
Q ss_pred HHhhCCCCcEEEEEeeecCC
Q 030025 104 CHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 104 ~~~~L~pgG~l~i~~~~~~~ 123 (184)
=.+-|.|||++++.-...++
T Consensus 223 Ra~ELvpGG~mvl~~~Gr~~ 242 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGRTS 242 (386)
T ss_pred HHHHhccCcEEEEEEecCCC
Confidence 34458999999998776643
No 228
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.95 E-value=6.3e-05 Score=58.13 Aligned_cols=96 Identities=21% Similarity=0.364 Sum_probs=73.6
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC-------------CCceEEEcccCccCCC---C
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY-------------PGVKHVGGDMFQSVPN---G 80 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-------------~~i~~~~~d~~~~~~~---~ 80 (184)
.++..++|-+|+|.|-.++.+.+ +| .-+++-+|+ |.|++.+++. ++++.+..|+.+.... .
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~ 365 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADM 365 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccc
Confidence 34668999999999999999887 55 568999999 9999999842 7899999999884322 2
Q ss_pred -CEEEech------hhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 81 -DAILIKW------ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 81 -D~i~~~~------~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
|+||... ++..+ -..++..-+++.|+++|.+++..
T Consensus 366 fD~vIVDl~DP~tps~~rl---YS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 366 FDVVIVDLPDPSTPSIGRL---YSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred ccEEEEeCCCCCCcchhhh---hhHHHHHHHHHhcCcCceEEEec
Confidence 8887732 12111 12368888999999999999843
No 229
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.94 E-value=8.6e-06 Score=55.29 Aligned_cols=80 Identities=21% Similarity=0.297 Sum_probs=56.8
Q ss_pred EEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCc-cCCCC--CEEEechhhhcCChHHHHHHH
Q 030025 25 LVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQ-SVPNG--DAILIKWILHDWSDEHCLKLL 101 (184)
Q Consensus 25 ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~~~~~--D~i~~~~~l~~~~~~~~~~~l 101 (184)
.+-||||.=. -+|++..+.+. +++.+.+++.-... .+.+. |+|++.++++|+.-++-...+
T Consensus 6 kv~ig~G~~r-------~npgWi~~d~e---------d~~~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~al 69 (185)
T COG4627 6 KVKIGAGGKR-------VNPGWIITDVE---------DRPEVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSAL 69 (185)
T ss_pred EEEEeccccc-------cCCCceeeehh---------cccccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHH
Confidence 4667887532 24666555443 22344444433333 55544 999999999999988889999
Q ss_pred HHHHhhCCCCcEEEEEeee
Q 030025 102 KNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 102 ~~~~~~L~pgG~l~i~~~~ 120 (184)
+++.+.|||||+|-++-+.
T Consensus 70 kechr~Lrp~G~LriAvPd 88 (185)
T COG4627 70 KECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred HHHHHHhCcCcEEEEEcCC
Confidence 9999999999999997654
No 230
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.90 E-value=0.00013 Score=62.16 Aligned_cols=115 Identities=15% Similarity=0.081 Sum_probs=78.9
Q ss_pred ccHHhHHHHHHHhcCC-CCCCeEEEecCCcChHHHHHHhhC---------------------------------------
Q 030025 4 HTTLVLQKILEAYKGF-EHIKQLVDVGGSLGNTLKAITSKY--------------------------------------- 43 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~-~~~~~ilDiG~G~G~~~~~l~~~~--------------------------------------- 43 (184)
....++..|+.... + ++...++|..||+|.+....+...
T Consensus 173 l~etlAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~ 251 (702)
T PRK11783 173 LKENLAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG 251 (702)
T ss_pred CcHHHHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 34567777887766 7 567899999999999998876531
Q ss_pred ---CCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-cCC---C-CCEEEechhhhc-CC-hHHHHHHHHHHH
Q 030025 44 ---PHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-SVP---N-GDAILIKWILHD-WS-DEHCLKLLKNCH 105 (184)
Q Consensus 44 ---~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~~~---~-~D~i~~~~~l~~-~~-~~~~~~~l~~~~ 105 (184)
...+++|+|+ +.+++.|+++ ..+.+..+|+.+ +.+ . .|+|+++-.... +. .++...+++++-
T Consensus 252 ~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg 331 (702)
T PRK11783 252 LAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLG 331 (702)
T ss_pred ccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHH
Confidence 1236899999 9999988875 347899999977 322 2 399999766544 22 223334444444
Q ss_pred hhC---CCCcEEEEEee
Q 030025 106 KSI---PEGGKVIVVES 119 (184)
Q Consensus 106 ~~L---~pgG~l~i~~~ 119 (184)
+.+ .||+.+++...
T Consensus 332 ~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 332 RRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHhCCCCeEEEEeC
Confidence 443 48988877554
No 231
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=8.7e-06 Score=55.70 Aligned_cols=97 Identities=16% Similarity=0.179 Sum_probs=64.8
Q ss_pred CCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---------CCceEEEcccCcc---CCC-C-CEEE
Q 030025 21 HIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---------PGVKHVGGDMFQS---VPN-G-DAIL 84 (184)
Q Consensus 21 ~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---------~~i~~~~~d~~~~---~~~-~-D~i~ 84 (184)
...+|||+|.| +|..+..++...|...+...|- ...++..++- .++....++.+.. ..+ . |.|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 45889999999 5555555556677778888886 5555544331 2344455555441 222 2 9999
Q ss_pred echhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 85 IKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 85 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+..++.. ++-...+.+.++..|+|.|.-++..|
T Consensus 109 aADClFf--dE~h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 109 AADCLFF--DEHHESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred eccchhH--HHHHHHHHHHHHHHhCcccceeEecC
Confidence 9887753 34445889999999999999777443
No 232
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.87 E-value=2.3e-05 Score=55.67 Aligned_cols=96 Identities=20% Similarity=0.305 Sum_probs=60.4
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhh-------hCCC------CCCceEEEcccCccCCC----C---
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQ-------HSPE------YPGVKHVGGDMFQSVPN----G--- 80 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~-------~a~~------~~~i~~~~~d~~~~~~~----~--- 80 (184)
.-.+.|||||-|.++..++..+|+.-++|.++ -.+-+ .++. ++|+.....+...-.|+ +
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 35689999999999999999999999999986 33322 2222 25666666666553332 1
Q ss_pred -CEEEechhhhcCCh-----HHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 81 -DAILIKWILHDWSD-----EHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 81 -D~i~~~~~l~~~~~-----~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+.+.. ---|.... --...++.+..=+|++||.++...
T Consensus 141 kmff~f-pdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 141 KMFFLF-PDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cceeec-CChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 22211 11111110 011257888888999999998754
No 233
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.84 E-value=1.1e-05 Score=52.03 Aligned_cols=90 Identities=24% Similarity=0.305 Sum_probs=39.8
Q ss_pred EEecCCcChHHHHHHhhCCCC---eEEEeec-h---hHhhhCCC---CCCceEEEcccCc---cCC-CC-CEEEechhhh
Q 030025 26 VDVGGSLGNTLKAITSKYPHI---KGINFDL-P---HVIQHSPE---YPGVKHVGGDMFQ---SVP-NG-DAILIKWILH 90 (184)
Q Consensus 26 lDiG~G~G~~~~~l~~~~~~~---~~~~~D~-~---~~~~~a~~---~~~i~~~~~d~~~---~~~-~~-D~i~~~~~l~ 90 (184)
||||+..|..+..+++..+.. +++++|. + ...+..++ ..+++++.++..+ .++ .. |++++-.. |
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-H 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-C
Confidence 699999999999999876444 6899998 6 33333333 2579999999875 233 33 99988553 2
Q ss_pred cCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 91 DWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 91 ~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
..+....-++.+.+.|+|||.+++-|
T Consensus 80 --~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 --SYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred --CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 12344577999999999999998854
No 234
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.82 E-value=0.00017 Score=52.34 Aligned_cols=107 Identities=14% Similarity=0.254 Sum_probs=77.6
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCC-------CCCceEEEcccCccC-
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPE-------YPGVKHVGGDMFQSV- 77 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~- 77 (184)
+.+.+++.+. +++++|||.=||+.+..++...| ..+++.+|+ ++..+.+.. ...+++++++..+.+
T Consensus 64 fl~~li~~~~----ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd 139 (237)
T KOG1663|consen 64 FLQMLIRLLN----AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLD 139 (237)
T ss_pred HHHHHHHHhC----CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHH
Confidence 3444555554 89999999999999999998864 479999997 655555432 367999999887621
Q ss_pred ---C----CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 78 ---P----NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 78 ---~----~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
+ +. |+++. .++. +.....+.++.+++|+||.+++-...++.
T Consensus 140 ~l~~~~~~~tfDfaFv----DadK-~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 140 ELLADGESGTFDFAFV----DADK-DNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred HHHhcCCCCceeEEEE----ccch-HHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 1 12 88887 3433 34558899999999999999886655544
No 235
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.81 E-value=0.002 Score=46.62 Aligned_cols=119 Identities=10% Similarity=0.099 Sum_probs=87.1
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCccCC-C-C-CEEEechhh
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQSVP-N-G-DAILIKWIL 89 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~~~-~-~-D~i~~~~~l 89 (184)
...++.||||-.+++..++.+.++..+++..|+ +.-++.|.++ ++++...+|-..++. + . |++++.++-
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMG 95 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMG 95 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCc
Confidence 445599999999999999999999999999998 7777776543 567888888876443 2 3 888887764
Q ss_pred hcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeE
Q 030025 90 HDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIR 169 (184)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~ 169 (184)
. .-...++++-...|+.=-++++.- . -...++++||.+.+|..+.
T Consensus 96 G----~lI~~ILee~~~~l~~~~rlILQP----n---------------------------~~~~~LR~~L~~~~~~I~~ 140 (226)
T COG2384 96 G----TLIREILEEGKEKLKGVERLILQP----N---------------------------IHTYELREWLSANSYEIKA 140 (226)
T ss_pred H----HHHHHHHHHhhhhhcCcceEEECC----C---------------------------CCHHHHHHHHHhCCceeee
Confidence 3 344578888888886444555511 0 1367788999999999876
Q ss_pred EEeec
Q 030025 170 FVCFF 174 (184)
Q Consensus 170 ~~~~~ 174 (184)
..-..
T Consensus 141 E~ile 145 (226)
T COG2384 141 ETILE 145 (226)
T ss_pred eeeec
Confidence 65443
No 236
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.81 E-value=0.00058 Score=53.19 Aligned_cols=150 Identities=20% Similarity=0.160 Sum_probs=77.1
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhC----------------CCCeEEEeech--hHhhhCCC----------CCC--ceE
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKY----------------PHIKGINFDLP--HVIQHSPE----------YPG--VKH 68 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~----------------~~~~~~~~D~~--~~~~~a~~----------~~~--i~~ 68 (184)
.++.-+|+|+||.+|..+..+.+.. |...+..-|+| ++=...+. .++ +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 5677899999999999988776432 33577778852 11111111 123 344
Q ss_pred EEcccCc-cCCCC--CEEEechhhhcCCh-------------------------HH------------HHHHHHHHHhhC
Q 030025 69 VGGDMFQ-SVPNG--DAILIKWILHDWSD-------------------------EH------------CLKLLKNCHKSI 108 (184)
Q Consensus 69 ~~~d~~~-~~~~~--D~i~~~~~l~~~~~-------------------------~~------------~~~~l~~~~~~L 108 (184)
+.+.+.. -+|.. |++++++++||++. ++ ...+|+.=.+-|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 6688877 56765 99999999999841 11 112222223458
Q ss_pred CCCcEEEEEeeecCCCCCCCc--cccchhhhhh-Hhhhh------------CCCccccCHHHHHHHHHHcC-Ccee
Q 030025 109 PEGGKVIVVESVLPELPENGT--HSKINSLADV-LVMTQ------------YPGGKERTKHEFTTLATEAG-FSGI 168 (184)
Q Consensus 109 ~pgG~l~i~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~------------~~~~~~~~~~~~~~~l~~aG-f~~i 168 (184)
+|||++++.-...++...... ......+... .-+.. ......++.+|+.+.+++.| |++.
T Consensus 174 v~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~ 249 (334)
T PF03492_consen 174 VPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIE 249 (334)
T ss_dssp EEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEE
T ss_pred ccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEE
Confidence 999999998877665211110 0001111111 11110 01123459999999999988 5443
No 237
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.78 E-value=3.2e-05 Score=52.53 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=41.8
Q ss_pred eEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc
Q 030025 24 QLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ 75 (184)
Q Consensus 24 ~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~ 75 (184)
+++|+|||+|.++..+++..+..+++++|. +.+.+.+++. +++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999998889999998 8888766553 346666655543
No 238
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.77 E-value=3.4e-05 Score=54.84 Aligned_cols=112 Identities=14% Similarity=0.100 Sum_probs=75.5
Q ss_pred ccHHhHHHHHHHhcCC-CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccC
Q 030025 4 HTTLVLQKILEAYKGF-EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMF 74 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~-~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~ 74 (184)
.+..+...+.+.+... -.+.++||+=||||.++...+++. ..+++.+|. +..+...+++ +++..+..|..
T Consensus 24 T~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~ 102 (183)
T PF03602_consen 24 TTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAF 102 (183)
T ss_dssp SSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHH
T ss_pred CcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHH
Confidence 3456667777777622 368999999999999999999986 348899998 7777666654 35888888976
Q ss_pred cc---C---CCC-CEEEechhhhcCChHHHHHHHHHHH--hhCCCCcEEEEEe
Q 030025 75 QS---V---PNG-DAILIKWILHDWSDEHCLKLLKNCH--KSIPEGGKVIVVE 118 (184)
Q Consensus 75 ~~---~---~~~-D~i~~~~~l~~~~~~~~~~~l~~~~--~~L~pgG~l~i~~ 118 (184)
.. . ... |+|++.=.... ... ...+++.+. .+|+++|.+++-.
T Consensus 103 ~~l~~~~~~~~~fDiIflDPPY~~-~~~-~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 103 KFLLKLAKKGEKFDIIFLDPPYAK-GLY-YEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp HHHHHHHHCTS-EEEEEE--STTS-CHH-HHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred HHHHhhcccCCCceEEEECCCccc-chH-HHHHHHHHHHCCCCCCCEEEEEEe
Confidence 51 1 223 99988654443 221 246777776 7899998877744
No 239
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.76 E-value=0.00036 Score=50.16 Aligned_cols=108 Identities=19% Similarity=0.237 Sum_probs=62.3
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHh---hC-CCCeEEEeec--hhHhhhCCCC----CCceEEEcccCcc-
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITS---KY-PHIKGINFDL--PHVIQHSPEY----PGVKHVGGDMFQS- 76 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~---~~-~~~~~~~~D~--~~~~~~a~~~----~~i~~~~~d~~~~- 76 (184)
..++++-.+. +..|+|+|.-.|..+...++ .+ +..+++++|+ +..-..+.+. ++|+++++|..++
T Consensus 23 ~~qeli~~~k----Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~ 98 (206)
T PF04989_consen 23 AYQELIWELK----PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPE 98 (206)
T ss_dssp HHHHHHHHH------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTH
T ss_pred HHHHHHHHhC----CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHH
Confidence 4667777776 89999999988877776654 33 7789999997 2222222222 7999999998862
Q ss_pred ----CC----CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 77 ----VP----NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 77 ----~~----~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
.. .. -++++..+=|...+- ...|+....+++||+++++.|...
T Consensus 99 ~~~~v~~~~~~~~~vlVilDs~H~~~hv--l~eL~~y~plv~~G~Y~IVeDt~~ 150 (206)
T PF04989_consen 99 IVDQVRELASPPHPVLVILDSSHTHEHV--LAELEAYAPLVSPGSYLIVEDTII 150 (206)
T ss_dssp HHHTSGSS----SSEEEEESS----SSH--HHHHHHHHHT--TT-EEEETSHHH
T ss_pred HHHHHHHhhccCCceEEEECCCccHHHH--HHHHHHhCccCCCCCEEEEEeccc
Confidence 11 12 345555555544433 467888999999999999977654
No 240
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.76 E-value=9.8e-05 Score=55.98 Aligned_cols=97 Identities=16% Similarity=0.236 Sum_probs=69.3
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--------CCceEEEcccCccC------CCCCEEEe
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--------PGVKHVGGDMFQSV------PNGDAILI 85 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------~~i~~~~~d~~~~~------~~~D~i~~ 85 (184)
+.++|||+=|=||.++...+.. ...+++.+|. ..+++.++++ .+++++..|+++.+ ...|+||+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4789999999999999977654 3458999999 7888888764 46889999998722 12399987
Q ss_pred ch---hhhcCC-hHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 86 KW---ILHDWS-DEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 86 ~~---~l~~~~-~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
-= +=..+. ..+..++++.+.++|+|||.|++..
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 21 111111 2355689999999999999998755
No 241
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.75 E-value=0.00032 Score=49.39 Aligned_cols=103 Identities=18% Similarity=0.254 Sum_probs=66.0
Q ss_pred HHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeechhHhhhCCCCCCceEEEc-ccCcc---------CCCC--
Q 030025 14 EAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDLPHVIQHSPEYPGVKHVGG-DMFQS---------VPNG-- 80 (184)
Q Consensus 14 ~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~a~~~~~i~~~~~-d~~~~---------~~~~-- 80 (184)
+++.-+.+..+|||+||..|+++.-..++. |+.-+.|+|+.... ..+++.++++ |+.++ +|+.
T Consensus 62 dKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~----p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~V 137 (232)
T KOG4589|consen 62 DKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE----PPEGATIIQGNDVTDPETYRKIFEALPNRPV 137 (232)
T ss_pred hhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc----CCCCcccccccccCCHHHHHHHHHhCCCCcc
Confidence 455556788999999999999999888885 99999999973221 1246666666 66663 2443
Q ss_pred CEEEechhh--------hcCC-hHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 81 DAILIKWIL--------HDWS-DEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 81 D~i~~~~~l--------~~~~-~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
|+|++-..- .|.. -+-+..++.-....++|+|.++.--+.
T Consensus 138 dvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~ 186 (232)
T KOG4589|consen 138 DVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWD 186 (232)
T ss_pred cEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEec
Confidence 888773321 1110 111122333344567899999985543
No 242
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.74 E-value=0.00034 Score=50.32 Aligned_cols=110 Identities=16% Similarity=0.164 Sum_probs=74.8
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-----CCceEEEcccCc---c
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-----PGVKHVGGDMFQ---S 76 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-----~~i~~~~~d~~~---~ 76 (184)
-+.+.....+.+ ..+.++||+||=|-|-....+-++-|.-+++.--.++++++.+.. .||....+--.+ .
T Consensus 87 EtpiMha~A~ai--~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~ 164 (271)
T KOG1709|consen 87 ETPIMHALAEAI--STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNT 164 (271)
T ss_pred hhHHHHHHHHHH--hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhcc
Confidence 334444455554 377899999999999988888777766555544338888877664 667666553333 3
Q ss_pred CCCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 77 VPNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 77 ~~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+++. |-|+.-.--.+ .++...+.+.+.++|||+|++-.-.
T Consensus 165 L~d~~FDGI~yDTy~e~--yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 165 LPDKHFDGIYYDTYSEL--YEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred ccccCcceeEeechhhH--HHHHHHHHHHHhhhcCCCceEEEec
Confidence 4443 88876433232 2466789999999999999986643
No 243
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.00022 Score=52.35 Aligned_cols=99 Identities=17% Similarity=0.368 Sum_probs=75.9
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCC----CeEEEeec-hhHhhh-----CCCCCCc--eEEEcccCc---cCCCC---
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPH----IKGINFDL-PHVIQH-----SPEYPGV--KHVGGDMFQ---SVPNG--- 80 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~----~~~~~~D~-~~~~~~-----a~~~~~i--~~~~~d~~~---~~~~~--- 80 (184)
.-+..+.+|+|+|+..-++.+...+.. .+++.+|+ ...++. +++++.+ .-+++|+.. ..|..
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~R 155 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRR 155 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeE
Confidence 334789999999999999988887655 79999998 444432 2345654 446778765 33443
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
=.++...++.++.+.++..+|..+...|+||-.+++.
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 3446788999999999999999999999999999885
No 244
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.72 E-value=0.00023 Score=58.86 Aligned_cols=84 Identities=7% Similarity=0.067 Sum_probs=53.3
Q ss_pred cHHhHHHHHHHhcCC-C-----CCCeEEEecCCcChHHHHHHhhCC--------CCeEEEeec-hhHhhhCCCC----C-
Q 030025 5 TTLVLQKILEAYKGF-E-----HIKQLVDVGGSLGNTLKAITSKYP--------HIKGINFDL-PHVIQHSPEY----P- 64 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~-~-----~~~~ilDiG~G~G~~~~~l~~~~~--------~~~~~~~D~-~~~~~~a~~~----~- 64 (184)
...+++.|++.+... . ...+|||.|||+|.++..++.+.+ ...+.++|+ +.++..++.. .
T Consensus 9 P~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~ 88 (524)
T TIGR02987 9 PPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL 88 (524)
T ss_pred cHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC
Confidence 345666666655211 1 446999999999999999987753 257899998 7777766542 2
Q ss_pred -CceEEEcccCc-c-------CCCCCEEEechh
Q 030025 65 -GVKHVGGDMFQ-S-------VPNGDAILIKWI 88 (184)
Q Consensus 65 -~i~~~~~d~~~-~-------~~~~D~i~~~~~ 88 (184)
.+.....|... . .+..|+|+.+=.
T Consensus 89 ~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPP 121 (524)
T TIGR02987 89 LEINVINFNSLSYVLLNIESYLDLFDIVITNPP 121 (524)
T ss_pred CCceeeecccccccccccccccCcccEEEeCCC
Confidence 34455555432 1 112399988543
No 245
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.72 E-value=0.0013 Score=49.90 Aligned_cols=151 Identities=12% Similarity=0.207 Sum_probs=90.6
Q ss_pred HhHHHHHHHhcC---CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEee----c-h-hHhhhCCCC--------------
Q 030025 7 LVLQKILEAYKG---FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFD----L-P-HVIQHSPEY-------------- 63 (184)
Q Consensus 7 ~~~~~l~~~~~~---~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D----~-~-~~~~~a~~~-------------- 63 (184)
.++..+-+.+++ -....+||--|||.|.++..++...+.+++--+. + + -++...+..
T Consensus 133 pii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn 212 (369)
T KOG2798|consen 133 PIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSN 212 (369)
T ss_pred hHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecccc
Confidence 445555555552 1134689999999999999999887666554333 1 1 111111110
Q ss_pred -------------------------CCceEEEcccCc--cCCC---C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCc
Q 030025 64 -------------------------PGVKHVGGDMFQ--SVPN---G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGG 112 (184)
Q Consensus 64 -------------------------~~i~~~~~d~~~--~~~~---~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG 112 (184)
.....-.+|+.+ .-++ . |+|+.++.+. ......+.++.+.+.|||||
T Consensus 213 ~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~GG 290 (369)
T KOG2798|consen 213 SLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKPGG 290 (369)
T ss_pred ccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccCCc
Confidence 123334577776 2222 2 8887765444 23455678999999999999
Q ss_pred EEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEe
Q 030025 113 KVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVC 172 (184)
Q Consensus 113 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~ 172 (184)
+++=..+..=+.......+ ...+-..+.+++..+.+..||++++...
T Consensus 291 vWiNlGPLlYHF~d~~g~~-------------~~~siEls~edl~~v~~~~GF~~~ke~~ 337 (369)
T KOG2798|consen 291 VWINLGPLLYHFEDTHGVE-------------NEMSIELSLEDLKRVASHRGFEVEKERG 337 (369)
T ss_pred EEEeccceeeeccCCCCCc-------------ccccccccHHHHHHHHHhcCcEEEEeee
Confidence 9886655432111100000 0112345889999999999999987653
No 246
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.69 E-value=0.00028 Score=49.98 Aligned_cols=102 Identities=17% Similarity=0.127 Sum_probs=69.1
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCccCCCCCEEEechhhhcC
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQSVPNGDAILIKWILHDW 92 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~~~~~~D~i~~~~~l~~~ 92 (184)
.=+.++|||+|+|+|-.+...++.. ...++..|+ +......+-+ -++.+...|..-+-+..|+++...+++.-
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH 155 (218)
T ss_pred ccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc
Confidence 4467999999999999998777664 346666776 5555544433 24677777766532333999999998854
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 93 SDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 93 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
....+++.-..++...|-.+++.++..+.
T Consensus 156 --~~a~~l~~~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 156 --TEADRLIPWKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred --hHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 34457788555555666677777766554
No 247
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.67 E-value=0.00022 Score=54.48 Aligned_cols=151 Identities=17% Similarity=0.119 Sum_probs=97.7
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC---------CCceEEEcccCc-cCCC----------
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY---------PGVKHVGGDMFQ-SVPN---------- 79 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~---------~~i~~~~~d~~~-~~~~---------- 79 (184)
.....|+-+|||--.-...+-.. +.+++..+|.|+.++.-++. .+.+++..|+.+ +++.
T Consensus 91 ~g~~qvViLgaGLDTRayRl~~~-~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 91 AGIRQVVILGAGLDTRAYRLDWP-KGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred hcccEEEEeccccccceeecCCC-CCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 34789999999988776554332 25899999998887654432 268999999994 4421
Q ss_pred C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCc-cccchhhhhhHhhhhCCCccccCHHHHH
Q 030025 80 G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGT-HSKINSLADVLVMTQYPGGKERTKHEFT 157 (184)
Q Consensus 80 ~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (184)
. -++++.+++.+++.++..++|+.+...+.||..++.............. .........................++.
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~ 249 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEIE 249 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHHH
Confidence 1 5889999999999999899999999999999888875531111110000 0000011100000000011123589999
Q ss_pred HHHHHcCCceeEEE
Q 030025 158 TLATEAGFSGIRFV 171 (184)
Q Consensus 158 ~~l~~aGf~~i~~~ 171 (184)
.++.+.||......
T Consensus 250 ~~l~~~g~~~~~~~ 263 (297)
T COG3315 250 TWLAERGWRSTLNR 263 (297)
T ss_pred HHHHhcCEEEEecC
Confidence 99999999877653
No 248
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.66 E-value=0.00022 Score=53.67 Aligned_cols=95 Identities=14% Similarity=0.231 Sum_probs=58.4
Q ss_pred CCCeEEEecCCcChHHHHHHhh--CCCCeEEEeec-hhHhhhCCCC--------CCceEEEcccCc---cCCCCCEEEec
Q 030025 21 HIKQLVDVGGSLGNTLKAITSK--YPHIKGINFDL-PHVIQHSPEY--------PGVKHVGGDMFQ---SVPNGDAILIK 86 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~--~~~~~~~~~D~-~~~~~~a~~~--------~~i~~~~~d~~~---~~~~~D~i~~~ 86 (184)
.+++|+=||||.=-+|..+... .+.+.++++|. +.+.+.+++. .++.|+.+|..+ +...+|+|+..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 3469999999977665555543 36788999999 8888887652 579999999876 23444999886
Q ss_pred hhhhcCChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 87 WILHDWSDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 87 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
....- ..++..++|+.+.+.++||..+++
T Consensus 200 alVg~-~~e~K~~Il~~l~~~m~~ga~l~~ 228 (276)
T PF03059_consen 200 ALVGM-DAEPKEEILEHLAKHMAPGARLVV 228 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-TTSEEEE
T ss_pred hhccc-ccchHHHHHHHHHhhCCCCcEEEE
Confidence 66653 223446899999999999998887
No 249
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.65 E-value=3.7e-05 Score=53.32 Aligned_cols=61 Identities=15% Similarity=0.350 Sum_probs=46.3
Q ss_pred CeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCcc---CC--C-CCEEEe
Q 030025 23 KQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQS---VP--N-GDAILI 85 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~~---~~--~-~D~i~~ 85 (184)
..|+|+.||.|..+..+++.+ .+++++|+ +..++.++.+ .++.++.+|+.+. +. . .|+|++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred CEEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 369999999999999999986 47899998 8888888764 5899999999872 22 2 388876
No 250
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.65 E-value=0.0006 Score=53.38 Aligned_cols=114 Identities=10% Similarity=0.046 Sum_probs=83.3
Q ss_pred ccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCC--------------------------------C-----
Q 030025 4 HTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPH--------------------------------I----- 46 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~--------------------------------~----- 46 (184)
....++..|+..-. +.++..++|-=||+|.++...+...++ .
T Consensus 175 LketLAaAil~lag-w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~ 253 (381)
T COG0116 175 LKETLAAAILLLAG-WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKE 253 (381)
T ss_pred chHHHHHHHHHHcC-CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCc
Confidence 44567777777766 888899999999999999998877642 1
Q ss_pred --eEEEeec-hhHhhhCCCC-------CCceEEEcccCc-c--CCCCCEEEechhhhc-CChHHHH-----HHHHHHHhh
Q 030025 47 --KGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-S--VPNGDAILIKWILHD-WSDEHCL-----KLLKNCHKS 107 (184)
Q Consensus 47 --~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~--~~~~D~i~~~~~l~~-~~~~~~~-----~~l~~~~~~ 107 (184)
.++|+|+ +.+++.|+.+ ..|+|.++|+.+ . +...|+|||+-.... +++++.. .+.+.+++.
T Consensus 254 ~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~ 333 (381)
T COG0116 254 LPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRL 333 (381)
T ss_pred cceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHH
Confidence 2779999 9999998875 469999999987 2 223399999766554 4443222 344566677
Q ss_pred CCCCcEEEEEe
Q 030025 108 IPEGGKVIVVE 118 (184)
Q Consensus 108 L~pgG~l~i~~ 118 (184)
++--+.++++.
T Consensus 334 ~~~ws~~v~tt 344 (381)
T COG0116 334 LAGWSRYVFTT 344 (381)
T ss_pred hcCCceEEEEc
Confidence 77777777754
No 251
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.64 E-value=0.00027 Score=55.73 Aligned_cols=91 Identities=11% Similarity=0.098 Sum_probs=70.2
Q ss_pred CeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC------CCceEEEcccCccC---CC-CCEEEechhhh
Q 030025 23 KQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQSV---PN-GDAILIKWILH 90 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~~---~~-~D~i~~~~~l~ 90 (184)
.+|||.-||+|..+..++++.+ ...++.+|+ +.+++.++++ .++.+...|+.... .. .|+|.+.- +.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-fG 124 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-FG 124 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-CC
Confidence 5899999999999999999853 358999999 8888877664 35778888887622 22 39998843 32
Q ss_pred cCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 91 DWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 91 ~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.+ ..+++.+.+.+++||.|.++-.
T Consensus 125 ---s~--~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 125 ---TP--APFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred ---Cc--HHHHHHHHHhcccCCEEEEEec
Confidence 22 2589999999999999999743
No 252
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=7.6e-05 Score=57.37 Aligned_cols=114 Identities=18% Similarity=0.362 Sum_probs=64.2
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCe-EEEeechhHhhhC----CCC---CCceEEEcccCc---cC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIK-GINFDLPHVIQHS----PEY---PGVKHVGGDMFQ---SV 77 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~-~~~~D~~~~~~~a----~~~---~~i~~~~~d~~~---~~ 77 (184)
.+++...-+++. +++|||+|.|.|.-..++-.-+|..+ ++.+..+.++... ..+ ........|+.. ++
T Consensus 102 L~~L~~~~~dfa-pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~l 180 (484)
T COG5459 102 LDELQKRVPDFA-PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSL 180 (484)
T ss_pred HHHHHHhCCCcC-cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCC
Confidence 334444444343 45699999998877766666666542 3333332222111 111 111222223321 45
Q ss_pred CCCCEEEechhhhcCC----hHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 78 PNGDAILIKWILHDWS----DEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 78 ~~~D~i~~~~~l~~~~----~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
|..|.+.+..+++.+- ..+....++.+..++.|||.|+|.|...+.
T Consensus 181 p~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 181 PAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred CccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 5557666666666542 223345899999999999999999975543
No 253
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.55 E-value=0.00011 Score=54.19 Aligned_cols=100 Identities=14% Similarity=0.153 Sum_probs=64.7
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCccCCCC--CEEEechhhh
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQSVPNG--DAILIKWILH 90 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~~~~~~--D~i~~~~~l~ 90 (184)
.+.+.+|+|||||.=-++.......+..+|++.|+ +.+.+..+.. .+.++...|.....+.. |+..+.=+++
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLP 182 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HH
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHH
Confidence 44689999999999999998888888899999999 8777766543 67788888998844433 9999988888
Q ss_pred cCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 91 DWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 91 ~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
.+.......-++ +.+.++ .=.++++-+.
T Consensus 183 ~le~q~~g~g~~-ll~~~~-~~~~vVSfPt 210 (251)
T PF07091_consen 183 CLERQRRGAGLE-LLDALR-SPHVVVSFPT 210 (251)
T ss_dssp HHHHHSTTHHHH-HHHHSC-ESEEEEEEES
T ss_pred HHHHHhcchHHH-HHHHhC-CCeEEEeccc
Confidence 776544322233 333332 2235554443
No 254
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.00079 Score=54.10 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=72.5
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc--c
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ--S 76 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~--~ 76 (184)
..++...++++. ..+..+++|+=||.|.++..++++ ..+++|+++ +.+++.|+++ .|++|+.+|.++ +
T Consensus 279 ekl~~~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~ 355 (432)
T COG2265 279 EKLYETALEWLE-LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTP 355 (432)
T ss_pred HHHHHHHHHHHh-hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhh
Confidence 345666677776 777889999999999999999976 468999999 8898888764 569999999987 2
Q ss_pred -CC--CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 77 -VP--NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 77 -~~--~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
+. .. |+|+..=.=--.. + .+++.+.+ ++|...+++
T Consensus 356 ~~~~~~~~d~VvvDPPR~G~~-~---~~lk~l~~-~~p~~IvYV 394 (432)
T COG2265 356 AWWEGYKPDVVVVDPPRAGAD-R---EVLKQLAK-LKPKRIVYV 394 (432)
T ss_pred hccccCCCCEEEECCCCCCCC-H---HHHHHHHh-cCCCcEEEE
Confidence 21 12 9998832211111 1 34555544 456666666
No 255
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00018 Score=57.82 Aligned_cols=66 Identities=17% Similarity=0.195 Sum_probs=54.2
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ 75 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~ 75 (184)
-++.-+-+++. ++.+..++|+-||||.++..+++.. .+++|+++ ++.++.|++. .|++|+++.+++
T Consensus 370 vLys~i~e~~~-l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 370 VLYSTIGEWAG-LPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred HHHHHHHHHhC-CCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 34555566666 8899999999999999999888875 58899998 8899888875 579999996666
No 256
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.45 E-value=0.00013 Score=57.31 Aligned_cols=65 Identities=17% Similarity=0.237 Sum_probs=48.5
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMF 74 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~ 74 (184)
..+++.+++.++ ..+. +|||+=||+|.++..+++.. .+++|++. +.+++.|+++ .|++|..++..
T Consensus 183 ~~l~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~ 254 (352)
T PF05958_consen 183 EKLYEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAE 254 (352)
T ss_dssp HHHHHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SH
T ss_pred HHHHHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeecc
Confidence 455667777777 5544 89999999999999999886 48999999 8999888764 67899877653
No 257
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.44 E-value=0.0022 Score=45.48 Aligned_cols=114 Identities=11% Similarity=0.057 Sum_probs=76.8
Q ss_pred ccHHhHHHHHHHhcC-CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccC
Q 030025 4 HTTLVLQKILEAYKG-FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMF 74 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~-~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~ 74 (184)
..+.+...+.+.+.. .=...++||+=+|+|.++...+++.- .+++.+|. .......+++ .++..+..|+.
T Consensus 25 T~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~ 103 (187)
T COG0742 25 TTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL 103 (187)
T ss_pred CchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH
Confidence 345666777777763 24678999999999999999999963 47888886 5555555443 67888888887
Q ss_pred c---cCC-C--CCEEEechhhhc-CChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 75 Q---SVP-N--GDAILIKWILHD-WSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 75 ~---~~~-~--~D~i~~~~~l~~-~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
. ..+ . .|+|++-=.++. +.+.+..-..-.-..+|+|+|.+++-.
T Consensus 104 ~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 104 RALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred HHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 4 111 2 399998666652 222222222223567899999988844
No 258
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=97.22 E-value=0.003 Score=46.36 Aligned_cols=97 Identities=11% Similarity=0.148 Sum_probs=71.2
Q ss_pred CCCCCeEEEecCCcChHHHHHHhh-CCCCeEEEeec-----hhHhhhCCCCCCceEEEcccCccCC------CCCEEEec
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSK-YPHIKGINFDL-----PHVIQHSPEYPGVKHVGGDMFQSVP------NGDAILIK 86 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~-~~~~~~~~~D~-----~~~~~~a~~~~~i~~~~~d~~~~~~------~~D~i~~~ 86 (184)
+++..+||=+|+++|.....+..- -|+-.+.+++. .+.+..|++++|+-.+.-|+..|.. --|+|++.
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFaD 233 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFAD 233 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEecc
Confidence 678899999999999998888776 46767777763 3677888999999999999987532 12777663
Q ss_pred hhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 87 WILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 87 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
-+ +++++.-+.=++...||+||.++++-.
T Consensus 234 va----qpdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 234 VA----QPDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred CC----CchhhhhhhhhhhhhhccCCeEEEEEe
Confidence 22 223333444567778999999998543
No 259
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.0072 Score=47.54 Aligned_cols=105 Identities=16% Similarity=0.203 Sum_probs=69.2
Q ss_pred HHhcCCCCCCeEEEecCCcChHHHHHHhhCCC--CeEEEeec-hhHhhhCCCC------CCceEEEcccCc---cCCC--
Q 030025 14 EAYKGFEHIKQLVDVGGSLGNTLKAITSKYPH--IKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ---SVPN-- 79 (184)
Q Consensus 14 ~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~--~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~---~~~~-- 79 (184)
..+. ..+..+|||..++-|.=|..+++.-++ ..++++|. +.-++..+++ .++.....|... ..+.
T Consensus 150 ~~L~-p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~ 228 (355)
T COG0144 150 LVLD-PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGE 228 (355)
T ss_pred HHcC-CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccC
Confidence 3444 678899999999999999999998654 56689997 5444444332 446667766543 1111
Q ss_pred -CCEEEe------chhhhc-------CChH-------HHHHHHHHHHhhCCCCcEEEEEee
Q 030025 80 -GDAILI------KWILHD-------WSDE-------HCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 80 -~D~i~~------~~~l~~-------~~~~-------~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.|.|++ .++++- +... -..++|+.+.+.|||||.|+.++=
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 366654 223311 1111 124789999999999999998663
No 260
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.18 E-value=0.0011 Score=50.73 Aligned_cols=68 Identities=19% Similarity=0.242 Sum_probs=58.3
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ 75 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~ 75 (184)
-+.+++++.+. ..+++.++|.=+|.|..+..+++..++.+++++|. +.+++.+++. .++.++++++.+
T Consensus 7 Vll~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 7 VLLDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred hhHHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 46788899988 77888999999999999999999987799999999 8898887653 478888887765
No 261
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.18 E-value=0.0012 Score=51.16 Aligned_cols=97 Identities=19% Similarity=0.188 Sum_probs=76.2
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc--cC-CCCCEEEechh
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ--SV-PNGDAILIKWI 88 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~--~~-~~~D~i~~~~~ 88 (184)
..+.+|||.=+|.|.++..+++.... +++++|+ |.+++..+++ ..+..+.+|... +. +.+|-|++...
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 35899999999999999999997543 4999999 9888877664 348899999987 22 33599999665
Q ss_pred hhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 89 LHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 89 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
-. +.+++..+.+.+++||.+-..+...++
T Consensus 266 ~~------a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 266 KS------AHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred Cc------chhhHHHHHHHhhcCcEEEEEeccchh
Confidence 32 236788899999999999998766544
No 262
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.16 E-value=0.0013 Score=47.90 Aligned_cols=98 Identities=22% Similarity=0.354 Sum_probs=68.5
Q ss_pred HhcCCCCCCeEEEecCCcChHHHHHHhhC-CCC--------eEEEeechhHhhhCCCCCCceEEEcccCcc---------
Q 030025 15 AYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHI--------KGINFDLPHVIQHSPEYPGVKHVGGDMFQS--------- 76 (184)
Q Consensus 15 ~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~--------~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~--------- 76 (184)
.+..+....+++|+....|.++.-+.++. ..+ .++.+|+..|... ++|.-+++|+.++
T Consensus 35 ef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI----~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 35 EFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI----EGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc----CceEEeecccCCHhHHHHHHHH
Confidence 33335677899999999999999888773 211 2899998555433 7899999999872
Q ss_pred CCC--CCEEEechh-----hhcCC----hHHHHHHHHHHHhhCCCCcEEEE
Q 030025 77 VPN--GDAILIKWI-----LHDWS----DEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 77 ~~~--~D~i~~~~~-----l~~~~----~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
++. +|+|+|-.+ +|.+. .+-....|.-...+|||||.++-
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 333 399999654 55443 11222456666788999999875
No 263
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.15 E-value=0.0014 Score=50.15 Aligned_cols=68 Identities=25% Similarity=0.292 Sum_probs=53.1
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCc
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ 75 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~ 75 (184)
-+.+++++.+. ..+++..+|.=-|.|..+..+++++|+++++++|. +.+++.+++. +++.++..++.+
T Consensus 7 Vll~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 7 VLLKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp TTHHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred ccHHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 46788999998 88899999999999999999999999999999999 9999777654 578888887764
No 264
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.04 E-value=0.0039 Score=44.99 Aligned_cols=113 Identities=14% Similarity=0.162 Sum_probs=69.7
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCC--CeEEEeec-hhHhhhCCCC------------------
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPH--IKGINFDL-PHVIQHSPEY------------------ 63 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~--~~~~~~D~-~~~~~~a~~~------------------ 63 (184)
+..+.+.-++.++ -+.+-++.|-.||.|+++.-+.-.+.. ..+.+.|+ +.+++.|+++
T Consensus 36 AsEi~qR~l~~l~-~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~ 114 (246)
T PF11599_consen 36 ASEIFQRALHYLE-GKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRE 114 (246)
T ss_dssp HHHHHHHHHCTSS-S-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc-CCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHH
Confidence 3444555555555 556779999999999998877766533 46888898 8899888663
Q ss_pred ------------------------------CCceEEEcccCccC-------CCC-CEEEechhhhc---CC----hHHHH
Q 030025 64 ------------------------------PGVKHVGGDMFQSV-------PNG-DAILIKWILHD---WS----DEHCL 98 (184)
Q Consensus 64 ------------------------------~~i~~~~~d~~~~~-------~~~-D~i~~~~~l~~---~~----~~~~~ 98 (184)
......+.|++++. +.. |+|+.-....+ |. ..-..
T Consensus 115 ~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~ 194 (246)
T PF11599_consen 115 LYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVA 194 (246)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHH
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHH
Confidence 12557888888732 223 99988655444 32 23345
Q ss_pred HHHHHHHhhCCCCcEEEEEe
Q 030025 99 KLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 99 ~~l~~~~~~L~pgG~l~i~~ 118 (184)
.+|..+.++|.+++++.+++
T Consensus 195 ~ml~~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 195 QMLNSLAPVLPERSVVAVSD 214 (246)
T ss_dssp HHHHHHHCCS-TT-EEEEEE
T ss_pred HHHHHHHhhCCCCcEEEEec
Confidence 89999999996666666644
No 265
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=97.02 E-value=0.0017 Score=46.14 Aligned_cols=84 Identities=21% Similarity=0.288 Sum_probs=60.1
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC---------CCceEEEcccCc-cC----------CCC
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY---------PGVKHVGGDMFQ-SV----------PNG 80 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~---------~~i~~~~~d~~~-~~----------~~~ 80 (184)
....|+.+|||.-....++....+++++..+|.|++++.-++. .+.+++..|+.+ .+ ++.
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 3459999999999999999888778999999998777654442 236789999986 21 122
Q ss_pred -CEEEechhhhcCChHHHHHHHHHH
Q 030025 81 -DAILIKWILHDWSDEHCLKLLKNC 104 (184)
Q Consensus 81 -D~i~~~~~l~~~~~~~~~~~l~~~ 104 (184)
-++++.+++.+++.++...+|+.+
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHh
Confidence 678889999999988877887765
No 266
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.98 E-value=0.0059 Score=49.14 Aligned_cols=97 Identities=23% Similarity=0.242 Sum_probs=71.6
Q ss_pred CeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhC-----CCCCCceEEEcccCc-cCCCC--CEEEechhhhcCC
Q 030025 23 KQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHS-----PEYPGVKHVGGDMFQ-SVPNG--DAILIKWILHDWS 93 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a-----~~~~~i~~~~~d~~~-~~~~~--D~i~~~~~l~~~~ 93 (184)
-+++.+|||...++..+-+.. .-.++.+|. +..++.. ++++...++..|+.. .++.. |+++--+.++++-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 499999999999998887763 235677776 4333322 344778999999988 67654 9999999998863
Q ss_pred -hHH-------HHHHHHHHHhhCCCCcEEEEEeee
Q 030025 94 -DEH-------CLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 94 -~~~-------~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
+++ ....+.++.++|+|||+++.....
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 222 124678999999999999887763
No 267
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.033 Score=42.48 Aligned_cols=146 Identities=16% Similarity=0.162 Sum_probs=94.8
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhC--CCCeEEEeechhHhhhCCC----C------------------------CCceE
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKY--PHIKGINFDLPHVIQHSPE----Y------------------------PGVKH 68 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~~~~~~~a~~----~------------------------~~i~~ 68 (184)
......|+.+|||.-.....|...+ +.+.++.+|.|..+++--. . ++...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 4577899999999999999999887 7789999997544432110 0 23444
Q ss_pred EEcccCc--cC----CC-----C--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchh
Q 030025 69 VGGDMFQ--SV----PN-----G--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINS 135 (184)
Q Consensus 69 ~~~d~~~--~~----~~-----~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~ 135 (184)
...|+.+ .+ .. . -++++..++.++++++...+++-+.+.. |.+.++..|...+......
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F-~~a~fv~YEQi~~~D~Fg~------- 236 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKF-ENAHFVNYEQINPNDRFGK------- 236 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhC-CcccEEEEeccCCCChHHH-------
Confidence 5555553 11 11 1 3567788999999988889999998887 4566677777765542211
Q ss_pred hhhhHhhhh-C--CCc-cccCHHHHHHHHHHcCCceeEEEe
Q 030025 136 LADVLVMTQ-Y--PGG-KERTKHEFTTLATEAGFSGIRFVC 172 (184)
Q Consensus 136 ~~~~~~~~~-~--~~~-~~~~~~~~~~~l~~aGf~~i~~~~ 172 (184)
.+-...... . .+. ...|.+..++.|.++||+-+....
T Consensus 237 vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~D 277 (335)
T KOG2918|consen 237 VMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVD 277 (335)
T ss_pred HHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhh
Confidence 111000000 0 011 234889999999999999876653
No 268
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.92 E-value=0.0061 Score=46.43 Aligned_cols=105 Identities=16% Similarity=0.169 Sum_probs=71.2
Q ss_pred HHHhcCCCCCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC------CCceEEEcccCcc----CCC-
Q 030025 13 LEAYKGFEHIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQS----VPN- 79 (184)
Q Consensus 13 ~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~~----~~~- 79 (184)
...+. ..+...|||.+++.|.-+..+++... ...+++.|. +.-+...+++ .++.....|..+. .+.
T Consensus 78 ~~~L~-~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~ 156 (283)
T PF01189_consen 78 ALALD-PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESK 156 (283)
T ss_dssp HHHHT-TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTT
T ss_pred ccccc-ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccc
Confidence 34455 66788999999999999999999865 679999997 5544444332 4566666776652 222
Q ss_pred CCEEEe------chhhhcCCh--------------HHHHHHHHHHHhhC----CCCcEEEEEe
Q 030025 80 GDAILI------KWILHDWSD--------------EHCLKLLKNCHKSI----PEGGKVIVVE 118 (184)
Q Consensus 80 ~D~i~~------~~~l~~~~~--------------~~~~~~l~~~~~~L----~pgG~l~i~~ 118 (184)
.|.|++ ..++..-++ .-..++|+.+.+.+ ||||+++.+.
T Consensus 157 fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 157 FDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp EEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred cchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 277755 222222211 11236899999999 9999999865
No 269
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.005 Score=41.81 Aligned_cols=111 Identities=16% Similarity=0.203 Sum_probs=74.1
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-c
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ-S 76 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~-~ 76 (184)
..-++.+++.++ -.+.++.+|+|+|.|.+....++.. -...+|+++ |-.+..++-+ .+..|..-|+++ +
T Consensus 58 teQv~nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~d 135 (199)
T KOG4058|consen 58 TEQVENVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVD 135 (199)
T ss_pred HHHHHHHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcc
Confidence 344566677777 5667899999999999998777754 345688888 7666665542 568888999998 7
Q ss_pred CCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 77 VPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 77 ~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
+.++..++++.+-.-++ .+-.++..-++.|-+++-.-+-.|.
T Consensus 136 l~dy~~vviFgaes~m~-----dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 136 LRDYRNVVIFGAESVMP-----DLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred ccccceEEEeehHHHHh-----hhHHHHHhhCcCCCeEEEEecCCCc
Confidence 76663333333322222 3455666677778787775554444
No 270
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=96.87 E-value=0.0035 Score=43.13 Aligned_cols=100 Identities=11% Similarity=0.071 Sum_probs=62.0
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-CCc-eEEEcccCccC---CCC-CEEEechhhhcCC--
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-PGV-KHVGGDMFQSV---PNG-DAILIKWILHDWS-- 93 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-~~i-~~~~~d~~~~~---~~~-D~i~~~~~l~~~~-- 93 (184)
.++.+-+|+. =.+...++-.+...++..++. ..++.-++. +++ .+...|+.+.+ ... |.+.+.++++|+.
T Consensus 2 ~~~g~V~GS~-~PwvEv~aL~~GA~~iltvey-n~L~i~~~~~dr~ssi~p~df~~~~~~y~~~fD~~as~~siEh~GLG 79 (177)
T PF03269_consen 2 GKSGLVVGSM-QPWVEVMALQHGAAKILTVEY-NKLEIQEEFRDRLSSILPVDFAKNWQKYAGSFDFAASFSSIEHFGLG 79 (177)
T ss_pred CceEEEEecC-CchhhHHHHHcCCceEEEEee-cccccCcccccccccccHHHHHHHHHHhhccchhhheechhcccccc
Confidence 4567777777 344455555565667777775 112222221 333 22334444433 223 9999999998872
Q ss_pred -------hHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 94 -------DEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 94 -------~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
+.-..+.+.+++++|||||.|++.-+..++
T Consensus 80 RYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 80 RYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred ccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence 112236788999999999999998887654
No 271
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=96.86 E-value=0.0027 Score=48.43 Aligned_cols=100 Identities=22% Similarity=0.312 Sum_probs=72.1
Q ss_pred CeEEEecCCcChHHHHHHhhC--------------------CCCeEEEeec-h--hHhhhCCC-----------------
Q 030025 23 KQLVDVGGSLGNTLKAITSKY--------------------PHIKGINFDL-P--HVIQHSPE----------------- 62 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~--------------------~~~~~~~~D~-~--~~~~~a~~----------------- 62 (184)
.+||-||+|.|+-..+++..+ +...++.+|+ + .++.....
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999998877777665 1257888985 2 22222110
Q ss_pred ------CCCceEEEcccCc-cC-------CC-C-CEEEechhhhcC---ChHHHHHHHHHHHhhCCCCcEEEEEeeecC
Q 030025 63 ------YPGVKHVGGDMFQ-SV-------PN-G-DAILIKWILHDW---SDEHCLKLLKNCHKSIPEGGKVIVVESVLP 122 (184)
Q Consensus 63 ------~~~i~~~~~d~~~-~~-------~~-~-D~i~~~~~l~~~---~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 122 (184)
.-++.|.+.|+.. .. .. . ++|...+++..+ .-.+..++|.++...++||-.|+|+|.-..
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGS 246 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGS 246 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCC
Confidence 0258999999986 21 11 3 888888888774 355778999999999999999999986443
No 272
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.74 E-value=0.014 Score=45.43 Aligned_cols=92 Identities=16% Similarity=0.181 Sum_probs=66.5
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcc---cCccCCC-CCEEEechhhhcC
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGD---MFQSVPN-GDAILIKWILHDW 92 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d---~~~~~~~-~D~i~~~~~l~~~ 92 (184)
..+..+|+=+|+| .|..+..+++..- .+++++|. ++-.+.|++...-.++... ..+.... .|+|+..-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 7788999999876 6688888888764 89999999 7778888877444444432 2222222 388877544 2
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 93 SDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 93 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
..+....+.|++||++++....
T Consensus 240 ------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 240 ------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ------hhHHHHHHHHhcCCEEEEECCC
Confidence 3488889999999999998765
No 273
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.71 E-value=0.0031 Score=50.91 Aligned_cols=97 Identities=16% Similarity=0.264 Sum_probs=59.1
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec---hhHhhhCCCCCCceEEEcccCccCCC---C-CEEEechhhhc
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL---PHVIQHSPEYPGVKHVGGDMFQSVPN---G-DAILIKWILHD 91 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~---~~~~~~a~~~~~i~~~~~d~~~~~~~---~-D~i~~~~~l~~ 91 (184)
..+...|+|..+|.|.++.+|.+. | +-+.-+-. +..+..--.+.-+- .--|--+.++. . |+|...++|..
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~-VWVMNVVP~~~~ntL~vIydRGLIG-~yhDWCE~fsTYPRTYDLlHA~~lfs~ 439 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P-VWVMNVVPVSGPNTLPVIYDRGLIG-VYHDWCEAFSTYPRTYDLLHADGLFSL 439 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C-ceEEEecccCCCCcchhhhhcccch-hccchhhccCCCCcchhheehhhhhhh
Confidence 446689999999999999998764 3 22222211 11111111111011 11122223333 2 99999888887
Q ss_pred CChH-HHHHHHHHHHhhCCCCcEEEEEe
Q 030025 92 WSDE-HCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 92 ~~~~-~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+.+. +...++=++-|.|+|||.++|-|
T Consensus 440 ~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 440 YKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hcccccHHHHHHHhHhhcCCCceEEEec
Confidence 6432 45578999999999999999955
No 274
>KOG2730 consensus Methylase [General function prediction only]
Probab=96.64 E-value=0.0035 Score=45.39 Aligned_cols=53 Identities=19% Similarity=0.287 Sum_probs=45.2
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ 75 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~ 75 (184)
....|+|.-||-|..+..++.++| .++++|+ |.-+..|+.+ ++|.|+++|+.+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 467899999999999999988864 6788888 8777888775 689999999987
No 275
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.54 E-value=0.0071 Score=49.20 Aligned_cols=111 Identities=19% Similarity=0.260 Sum_probs=76.8
Q ss_pred ccHHhHHHHHHHhcCCCC--CCeEEEecCCcChHHHHHHhh----CCCCeEEEeec-hhHhhhCCCC------CCceEEE
Q 030025 4 HTTLVLQKILEAYKGFEH--IKQLVDVGGSLGNTLKAITSK----YPHIKGINFDL-PHVIQHSPEY------PGVKHVG 70 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~--~~~ilDiG~G~G~~~~~l~~~----~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~ 70 (184)
.++++...+++..++-+. ...|+-+|+|-|-+..+.++. ...++++.++. |+++...+.. .+|+++.
T Consensus 348 Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~ 427 (649)
T KOG0822|consen 348 YQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIIS 427 (649)
T ss_pred HHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEe
Confidence 456677777777663333 567899999999887766654 34578899987 7766555443 6799999
Q ss_pred cccCc-cCC--CCCEEEechhhhcCCh-HHHHHHHHHHHhhCCCCcEEE
Q 030025 71 GDMFQ-SVP--NGDAILIKWILHDWSD-EHCLKLLKNCHKSIPEGGKVI 115 (184)
Q Consensus 71 ~d~~~-~~~--~~D~i~~~~~l~~~~~-~~~~~~l~~~~~~L~pgG~l~ 115 (184)
.|+.+ ..| ..|++++. .|.-|++ +-..+.|..+.+.|||+|.-+
T Consensus 428 ~DMR~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 428 SDMRKWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred ccccccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 99998 333 23888763 3333332 212267999999999998755
No 276
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.49 E-value=0.02 Score=42.56 Aligned_cols=97 Identities=15% Similarity=0.103 Sum_probs=60.9
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC--------C----CceE--EEcccCc----cCCC-CCE
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY--------P----GVKH--VGGDMFQ----SVPN-GDA 82 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~--------~----~i~~--~~~d~~~----~~~~-~D~ 82 (184)
...|||+|+|+|..+..++. .....++..|.+...+..... + .+.. ..++... -.+. .|+
T Consensus 87 ~~~vlELGsGtglvG~~aa~-~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAAL-LLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred ceeEEEecCCccHHHHHHHH-HhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 56799999999966655554 346788888875444333221 1 2222 2222221 1234 499
Q ss_pred EEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 83 ILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 83 i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
|+.+.++++-...+ .++.-+...|-.+|.+++.-...
T Consensus 166 ilasDvvy~~~~~e--~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 166 ILASDVVYEEESFE--GLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred EEEeeeeecCCcch--hHHHHHHHHHhcCCeEEEEEecc
Confidence 99999998765444 57888888888888666655444
No 277
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.46 E-value=0.0041 Score=46.98 Aligned_cols=110 Identities=18% Similarity=0.175 Sum_probs=72.9
Q ss_pred HHHHHHHhcC--CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----------CCceEEEcccCc
Q 030025 9 LQKILEAYKG--FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----------PGVKHVGGDMFQ 75 (184)
Q Consensus 9 ~~~l~~~~~~--~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------~~i~~~~~d~~~ 75 (184)
+++++.+++. .+.++.+|-||.|.|.+.+...+.-.--.+..+|+ ...++..+++ +++....+|-..
T Consensus 107 Yqemi~~l~l~s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~ 186 (337)
T KOG1562|consen 107 YQEMIAHLALCSHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFL 186 (337)
T ss_pred ceeeeeccccccCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHH
Confidence 4455555552 44678999999999999998887632235666676 6666666554 679999898765
Q ss_pred ---cCCC-C-CEEEechhhhcCCh--HHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 76 ---SVPN-G-DAILIKWILHDWSD--EHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 76 ---~~~~-~-D~i~~~~~l~~~~~--~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
..+. . |+|+....=-..+. --....+..+.+.|||||+++...
T Consensus 187 fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 187 FLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred HHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 3322 2 99877332111111 011257888999999999998854
No 278
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.37 E-value=0.0015 Score=42.01 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=44.2
Q ss_pred CEEEechhhhcC----ChHHHHHHHHHHHhhCCCCcEEEEEeeecCCC-CCCCccccchhhhhhHhhhhCCCccccCHHH
Q 030025 81 DAILIKWILHDW----SDEHCLKLLKNCHKSIPEGGKVIVVESVLPEL-PENGTHSKINSLADVLVMTQYPGGKERTKHE 155 (184)
Q Consensus 81 D~i~~~~~l~~~----~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
|+|+|.++--++ .|+-...+|+++++.|+|||.+++.-..+.+- ......+ .....+.. -...+++
T Consensus 3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~---~~~~n~~~------i~lrP~~ 73 (110)
T PF06859_consen 3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSE---EIRENYKS------IKLRPDQ 73 (110)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-H---HHHHHHHH----------GGG
T ss_pred cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhH---HHHhHHhc------eEEChHH
Confidence 888887765543 57777899999999999999998833222111 0000000 11111111 1124567
Q ss_pred HHHHHHH--cCCceeEEEee
Q 030025 156 FTTLATE--AGFSGIRFVCF 173 (184)
Q Consensus 156 ~~~~l~~--aGf~~i~~~~~ 173 (184)
+.+.|.+ .||+..+....
T Consensus 74 F~~~L~~~evGF~~~e~~~~ 93 (110)
T PF06859_consen 74 FEDYLLEPEVGFSSVEELGV 93 (110)
T ss_dssp HHHHHTSTTT---EEEEE--
T ss_pred HHHHHHhcccceEEEEEccc
Confidence 8888887 59998875544
No 279
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=96.30 E-value=0.012 Score=46.18 Aligned_cols=114 Identities=14% Similarity=0.279 Sum_probs=80.2
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec----hhHhhhCCC------------CCCceEE
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL----PHVIQHSPE------------YPGVKHV 69 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~----~~~~~~a~~------------~~~i~~~ 69 (184)
......+.+.+. +.+...-.|+|+|.|.....++.......-+|+.+ +++....++ ...+..+
T Consensus 178 ~~ql~si~dEl~-~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i 256 (419)
T KOG3924|consen 178 LEQLRSIVDELK-LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETI 256 (419)
T ss_pred HHHHHHHHHHhc-cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeec
Confidence 344667778888 88999999999999999998887765545556653 222222211 1458889
Q ss_pred EcccCcc------CCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 70 GGDMFQS------VPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 70 ~~d~~~~------~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
++++.++ .+.+++|+++++.. +++.. .=++++..-+++|-+++-.++..+.
T Consensus 257 ~gsf~~~~~v~eI~~eatvi~vNN~~F--dp~L~-lr~~eil~~ck~gtrIiS~~~L~~r 313 (419)
T KOG3924|consen 257 HGSFLDPKRVTEIQTEATVIFVNNVAF--DPELK-LRSKEILQKCKDGTRIISSKPLVPR 313 (419)
T ss_pred ccccCCHHHHHHHhhcceEEEEecccC--CHHHH-HhhHHHHhhCCCcceEecccccccc
Confidence 9999873 23458999988765 43333 3355899999999999988887763
No 280
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.28 E-value=0.023 Score=48.43 Aligned_cols=96 Identities=15% Similarity=0.169 Sum_probs=58.0
Q ss_pred CCCeEEEecCCcChHHHHHHhhC-------C-----CCeEEEeec-h---hHhhhCC-----------C----C------
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKY-------P-----HIKGINFDL-P---HVIQHSP-----------E----Y------ 63 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~-------~-----~~~~~~~D~-~---~~~~~a~-----------~----~------ 63 (184)
+.-+|+|+|=|+|.+....++.. | .++++.++. | +.+..+. + +
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34689999999999887777544 3 357888884 3 1111110 0 0
Q ss_pred --------C--CceEEEcccCcc---CCC-CCEEEech-hhhcCChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 64 --------P--GVKHVGGDMFQS---VPN-GDAILIKW-ILHDWSDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 64 --------~--~i~~~~~d~~~~---~~~-~D~i~~~~-~l~~~~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
. .++...+|+.+. +.. .|+++.-. +-..=++=-...+|+.++++++|||++.-
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 1 244566777652 222 38887732 11111211234789999999999999875
No 281
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.01 E-value=0.011 Score=37.87 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=26.1
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL 53 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~ 53 (184)
+...-+|||||.|-+.--|.+. +.++.|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 5678999999999999888877 467789995
No 282
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=95.97 E-value=0.066 Score=42.52 Aligned_cols=45 Identities=27% Similarity=0.394 Sum_probs=33.5
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcCh----HHHHHHhhC---CCCeEEEeec
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGN----TLKAITSKY---PHIKGINFDL 53 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~----~~~~l~~~~---~~~~~~~~D~ 53 (184)
..+.|++++. ..+.-+|+|+|.|.|. +...|+++. |..++|+++.
T Consensus 98 aNqaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~ 149 (374)
T PF03514_consen 98 ANQAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGP 149 (374)
T ss_pred hhHHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccC
Confidence 3567888887 6677899999999994 344444442 7789999986
No 283
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.81 E-value=0.13 Score=40.82 Aligned_cols=99 Identities=14% Similarity=0.149 Sum_probs=64.2
Q ss_pred CCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcc----cCc---cC-CC-C-CEEEec
Q 030025 19 FEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGD----MFQ---SV-PN-G-DAILIK 86 (184)
Q Consensus 19 ~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d----~~~---~~-~~-~-D~i~~~ 86 (184)
+.+..+||.+|||. |..+..+++.....++++++. ++..+.+++...+..+... ..+ .. +. . |+++-.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 66778999999987 889999998875446888887 7777777665333332211 111 11 11 3 777653
Q ss_pred hh---------------hhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 87 WI---------------LHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 87 ~~---------------l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.. ++..+++ ...++++.+.++|+|++++...
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCcccccccccccccccccccCc--hHHHHHHHHHhccCCEEEEEcC
Confidence 21 1111222 3578999999999999998754
No 284
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.78 E-value=0.03 Score=42.59 Aligned_cols=71 Identities=24% Similarity=0.273 Sum_probs=59.8
Q ss_pred ccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCC-CeEEEeec-hhHhhhCCCC-----CCceEEEcccCc
Q 030025 4 HTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPH-IKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQ 75 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~-~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~ 75 (184)
+..-+.++.++.+. ..+++..+|.==|.|..+..++++++. .+++++|. +.+++.|++. +++.+++..+.+
T Consensus 7 HipVLl~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 7 HIPVLLNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred ccchHHHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 34457888999998 888899999999999999999999875 45999999 9999998874 578888877654
No 285
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=95.48 E-value=0.035 Score=42.48 Aligned_cols=84 Identities=12% Similarity=0.154 Sum_probs=43.8
Q ss_pred HHHHHHHhcC-CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--------CCceEEEccc----C
Q 030025 9 LQKILEAYKG-FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--------PGVKHVGGDM----F 74 (184)
Q Consensus 9 ~~~l~~~~~~-~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------~~i~~~~~d~----~ 74 (184)
+.+++..... .+..-++||||+|...+=-.|..+..++++++.|+ +..++.|++. .+|+++...- +
T Consensus 89 i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~ 168 (299)
T PF05971_consen 89 IADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIF 168 (299)
T ss_dssp HHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SST
T ss_pred HHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccc
Confidence 3444444331 22356899999998866544554544899999999 8899888763 3577765432 2
Q ss_pred ccC--C-CC-CEEEechhhhcC
Q 030025 75 QSV--P-NG-DAILIKWILHDW 92 (184)
Q Consensus 75 ~~~--~-~~-D~i~~~~~l~~~ 92 (184)
+.. + +. |+.+|+-.+|.-
T Consensus 169 ~~i~~~~e~~dftmCNPPFy~s 190 (299)
T PF05971_consen 169 DGIIQPNERFDFTMCNPPFYSS 190 (299)
T ss_dssp TTSTT--S-EEEEEE-----SS
T ss_pred hhhhcccceeeEEecCCccccC
Confidence 211 1 22 888888888753
No 286
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=95.17 E-value=0.49 Score=33.89 Aligned_cols=111 Identities=18% Similarity=0.204 Sum_probs=77.8
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhh----CCCCeEEEeec--hhHhhhCCCCCCceEEEcccCccC----
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSK----YPHIKGINFDL--PHVIQHSPEYPGVKHVGGDMFQSV---- 77 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~----~~~~~~~~~D~--~~~~~~a~~~~~i~~~~~d~~~~~---- 77 (184)
..++++-.+. +..|.|+|.-.|..+...+.. ....+++++|+ ...-..|++.+++.|+.++-.++-
T Consensus 60 ~yQellw~~~----P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eq 135 (237)
T COG3510 60 NYQELLWELQ----PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQ 135 (237)
T ss_pred HHHHHHHhcC----CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHH
Confidence 3455555554 789999999988777666543 24468888887 222245555799999999988731
Q ss_pred ----CC-C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCC
Q 030025 78 ----PN-G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPEL 124 (184)
Q Consensus 78 ----~~-~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 124 (184)
.+ . -+.+|..+-|+.. .....++-+.++|.-|-++++-|...++.
T Consensus 136 i~~~~~~y~kIfvilDsdHs~~--hvLAel~~~~pllsaG~Y~vVeDs~v~dl 186 (237)
T COG3510 136 IRRLKNEYPKIFVILDSDHSME--HVLAELKLLAPLLSAGDYLVVEDSNVNDL 186 (237)
T ss_pred HHHHhcCCCcEEEEecCCchHH--HHHHHHHHhhhHhhcCceEEEecccccCC
Confidence 12 2 5567777777653 33467888999999999999988776554
No 287
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=95.07 E-value=0.1 Score=38.90 Aligned_cols=96 Identities=20% Similarity=0.261 Sum_probs=54.0
Q ss_pred CCCCeEEEecCCcChHHHHHH---hhC--CCCeEEEeec-hhHhhhC------------------------------CCC
Q 030025 20 EHIKQLVDVGGSLGNTLKAIT---SKY--PHIKGINFDL-PHVIQHS------------------------------PEY 63 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~---~~~--~~~~~~~~D~-~~~~~~a------------------------------~~~ 63 (184)
.-++.|+|+||=.|..+..++ +.+ +.-++.++|. ..+-+.. .++
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 456899999999998765543 322 3457888884 3222111 001
Q ss_pred ----CCceEEEcccCccCCCC--CEE---EechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 64 ----PGVKHVGGDMFQSVPNG--DAI---LIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 64 ----~~i~~~~~d~~~~~~~~--D~i---~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+++.++.+.+.+.+|.. +-| .+-.=+ .+.....|+.++..|.|||.+++-|.
T Consensus 153 gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl----YesT~~aLe~lyprl~~GGiIi~DDY 213 (248)
T PF05711_consen 153 GLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL----YESTKDALEFLYPRLSPGGIIIFDDY 213 (248)
T ss_dssp TTSSTTEEEEES-HHHHCCC-TT--EEEEEE---S----HHHHHHHHHHHGGGEEEEEEEEESST
T ss_pred CCCcccEEEECCcchhhhccCCCccEEEEEEeccc----hHHHHHHHHHHHhhcCCCeEEEEeCC
Confidence 36889999987755433 222 221111 23456899999999999999999553
No 288
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=95.04 E-value=0.029 Score=37.95 Aligned_cols=71 Identities=23% Similarity=0.283 Sum_probs=48.2
Q ss_pred eEEEeec-hhHhhhCCCC-------CCceEEEcccCc---cCCC-C-CEEEechhhhcCC---------hHHHHHHHHHH
Q 030025 47 KGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ---SVPN-G-DAILIKWILHDWS---------DEHCLKLLKNC 104 (184)
Q Consensus 47 ~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~---~~~~-~-D~i~~~~~l~~~~---------~~~~~~~l~~~ 104 (184)
++.++|+ +++++..+++ .+++++..+-.+ ..+. . |+++.+. .++| .+.....++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence 5789999 8888877764 468888777665 2444 3 7776643 2332 34556889999
Q ss_pred HhhCCCCcEEEEEee
Q 030025 105 HKSIPEGGKVIVVES 119 (184)
Q Consensus 105 ~~~L~pgG~l~i~~~ 119 (184)
.++|+|||.+.+.-.
T Consensus 79 l~lL~~gG~i~iv~Y 93 (140)
T PF06962_consen 79 LELLKPGGIITIVVY 93 (140)
T ss_dssp HHHEEEEEEEEEEE-
T ss_pred HHhhccCCEEEEEEe
Confidence 999999999998653
No 289
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.00 E-value=0.27 Score=38.69 Aligned_cols=96 Identities=21% Similarity=0.166 Sum_probs=66.8
Q ss_pred CCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccC--------c-cCCCC-CEEEech
Q 030025 20 EHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMF--------Q-SVPNG-DAILIKW 87 (184)
Q Consensus 20 ~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~--------~-~~~~~-D~i~~~~ 87 (184)
.+..+|+=+||| .|..+..+++.....+++.+|. +.-++.|++.-........-. . .-+.. |+++-..
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 344489999999 6788788888888889999999 888999987533332222111 1 11223 8876644
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
- . ...+..+.+.++|||++++.......
T Consensus 247 G-----~---~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 247 G-----S---PPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred C-----C---HHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 4 1 14689999999999999997765444
No 290
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.62 E-value=0.46 Score=36.76 Aligned_cols=95 Identities=12% Similarity=0.156 Sum_probs=68.1
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEc--------ccCc----cCCC-C-CE
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGG--------DMFQ----SVPN-G-DA 82 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~--------d~~~----~~~~-~-D~ 82 (184)
++...+||=+|+| .|-.+...++.+...+++.+|+ +.-++.|++. +.+.... ++.+ ..+. . |+
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~-Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~ 245 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF-GATVTDPSSHKSSPQELAELVEKALGKKQPDV 245 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh-CCeEEeeccccccHHHHHHHHHhhccccCCCe
Confidence 6778999999999 6888888888888889999999 9999999885 1111111 1111 1222 2 77
Q ss_pred EEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecC
Q 030025 83 ILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLP 122 (184)
Q Consensus 83 i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 122 (184)
.+-..-++ ..++.....+++||++++..+..+
T Consensus 246 ~~dCsG~~--------~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 246 TFDCSGAE--------VTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred EEEccCch--------HHHHHHHHHhccCCEEEEeccCCC
Confidence 77665554 457778889999999999876544
No 291
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=94.53 E-value=0.13 Score=38.74 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=31.4
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhC-----CCCeEEEeec
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKY-----PHIKGINFDL 53 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~-----~~~~~~~~D~ 53 (184)
+.++..++|+|||.|.++.++++.. +...++.+|-
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence 6788899999999999999999987 5678999995
No 292
>PRK10742 putative methyltransferase; Provisional
Probab=94.41 E-value=0.13 Score=38.23 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=34.9
Q ss_pred HHHHHHhcCCCCCC--eEEEecCCcChHHHHHHhhCCCCeEEEeec
Q 030025 10 QKILEAYKGFEHIK--QLVDVGGSLGNTLKAITSKYPHIKGINFDL 53 (184)
Q Consensus 10 ~~l~~~~~~~~~~~--~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~ 53 (184)
+.|+++.. +++.. +|||.=+|+|.-+..++.+ +++++.++.
T Consensus 76 ~~l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr 118 (250)
T PRK10742 76 EAVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLER 118 (250)
T ss_pred cHHHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEEC
Confidence 56777777 77766 9999999999999999998 677999995
No 293
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=94.26 E-value=0.1 Score=41.54 Aligned_cols=60 Identities=12% Similarity=0.167 Sum_probs=50.5
Q ss_pred CCceEEEcccCc---cCCC-C-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 64 PGVKHVGGDMFQ---SVPN-G-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 64 ~~i~~~~~d~~~---~~~~-~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
++++++.+++.+ ..+. . |.++......++++++..+.++++.+.++|||++++=....+.
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 679999999887 2333 3 9999999999999999999999999999999999996654433
No 294
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=94.04 E-value=0.1 Score=41.11 Aligned_cols=50 Identities=18% Similarity=0.376 Sum_probs=37.4
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhC
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHS 60 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a 60 (184)
..+++.+.++.+...++|+|.|-|++++-+.-.+ +..+.++|- ....++|
T Consensus 142 selvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra 192 (476)
T KOG2651|consen 142 SELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERA 192 (476)
T ss_pred HHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHH
Confidence 4455555557778999999999999999777666 679999996 3333444
No 295
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=93.91 E-value=0.19 Score=37.79 Aligned_cols=75 Identities=15% Similarity=0.244 Sum_probs=47.7
Q ss_pred HHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcE
Q 030025 35 TLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGK 113 (184)
Q Consensus 35 ~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~ 113 (184)
+++++.+..+..++++.|. +..++.+.+..-+.-...+ .+.+.+.|+|+.+-.+. ....+++++...+++|+.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~DlvvlavP~~-----~~~~~l~~~~~~~~~~~i 74 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAVPVS-----AIEDVLEEIAPYLKPGAI 74 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S-HH-----HHHHHHHHHHCGS-TTSE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcCCHH-----HHHHHHHHhhhhcCCCcE
Confidence 3567777788899999999 7777777655434433333 22344459998865544 445778888888888766
Q ss_pred EE
Q 030025 114 VI 115 (184)
Q Consensus 114 l~ 115 (184)
+.
T Consensus 75 v~ 76 (258)
T PF02153_consen 75 VT 76 (258)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 296
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=93.86 E-value=2 Score=31.93 Aligned_cols=125 Identities=13% Similarity=0.025 Sum_probs=66.6
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----CCceEEEcccCccCCC----C-CEEEechhh
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----PGVKHVGGDMFQSVPN----G-DAILIKWIL 89 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~i~~~~~d~~~~~~~----~-D~i~~~~~l 89 (184)
.+++||=+| -.-.++.+++...+..+++++|+ +.+++.-++. -.++.+..|+.+++|. . |++++.=.-
T Consensus 44 ~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPy 122 (243)
T PF01861_consen 44 EGKRILFLG-DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPY 122 (243)
T ss_dssp TT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---S
T ss_pred cCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCC
Confidence 568999998 44456666666666779999998 6666544332 3499999999997664 2 999883221
Q ss_pred hcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeE
Q 030025 90 HDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIR 169 (184)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~ 169 (184)
..+-..-++++....||..|-.........+. ......++++.+.+.||.+.+
T Consensus 123 ---T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~------------------------s~~~~~~~Q~~l~~~gl~i~d 175 (243)
T PF01861_consen 123 ---TPEGLKLFLSRGIEALKGEGCAGYFGFTHKEA------------------------SPDKWLEVQRFLLEMGLVITD 175 (243)
T ss_dssp ---SHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--------------------------HHHHHHHHHHHHTS--EEEE
T ss_pred ---CHHHHHHHHHHHHHHhCCCCceEEEEEecCcC------------------------cHHHHHHHHHHHHHCCcCHHH
Confidence 12334578999999998877433322221110 000124677888899998887
Q ss_pred EEee
Q 030025 170 FVCF 173 (184)
Q Consensus 170 ~~~~ 173 (184)
+.+.
T Consensus 176 ii~~ 179 (243)
T PF01861_consen 176 IIPD 179 (243)
T ss_dssp EEEE
T ss_pred HHhh
Confidence 7764
No 297
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=93.60 E-value=0.31 Score=33.27 Aligned_cols=114 Identities=16% Similarity=0.135 Sum_probs=56.7
Q ss_pred cHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCC-----
Q 030025 5 TTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVP----- 78 (184)
Q Consensus 5 ~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~----- 78 (184)
++...+....... .-.+.|||+|=|.|.+=-.|.+.+|+-++.++|- -.....+ .-+.=.++.+|+.+..+
T Consensus 14 QR~~L~~a~~~v~--~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~-~P~~~~~ilGdi~~tl~~~~~~ 90 (160)
T PF12692_consen 14 QRDCLNWAAAQVA--GLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSS-TPPEEDLILGDIRETLPALARF 90 (160)
T ss_dssp HHHHHHHHHHHTT--T--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG----GGGEEES-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCC-CCchHheeeccHHHHhHHHHhc
Confidence 3444455555554 4458999999999999999999999999999994 1111111 01445778888876222
Q ss_pred -CC-CEEEechhhhcCC--hHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 79 -NG-DAILIKWILHDWS--DEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 79 -~~-D~i~~~~~l~~~~--~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
.. -++..-.-.++-. ......+=.-+..+|.|||.++...+..
T Consensus 91 g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 91 GAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp -S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred CCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence 11 3333322222211 1111123334567789999988866544
No 298
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=93.50 E-value=0.13 Score=34.12 Aligned_cols=87 Identities=15% Similarity=0.090 Sum_probs=49.3
Q ss_pred CceEEEcccCc---cCCCC-CEEEech-hhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhh
Q 030025 65 GVKHVGGDMFQ---SVPNG-DAILIKW-ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADV 139 (184)
Q Consensus 65 ~i~~~~~d~~~---~~~~~-D~i~~~~-~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 139 (184)
.+++..+|+.+ .+... |+|+... +-.-=++--..++|++++++++|||.+.-..
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys--------------------- 90 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYS--------------------- 90 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES----------------------
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEee---------------------
Confidence 35556666654 12222 7776532 1110011111368999999999999876611
Q ss_pred HhhhhCCCccccCHHHHHHHHHHcCCceeEEEeecCceEEEEEeC
Q 030025 140 LVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNLWVMEFYK 184 (184)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~~~~~~~~~~~~ 184 (184)
....+++.|+++||.+.+....++--..+.+.|
T Consensus 91 ------------~a~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 91 ------------SAGAVRRALQQAGFEVEKVPGFGRKREMLRAVK 123 (124)
T ss_dssp -------------BHHHHHHHHHCTEEEEEEE-STTSSEEEEEEC
T ss_pred ------------chHHHHHHHHHcCCEEEEcCCCCCcchheEEEc
Confidence 235578899999999876666555555555443
No 299
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.33 E-value=1.5 Score=28.69 Aligned_cols=85 Identities=16% Similarity=0.269 Sum_probs=55.1
Q ss_pred CCCeEEEecCCcC-hHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCcc-C--CCC-CEEEechhhhcCChH
Q 030025 21 HIKQLVDVGGSLG-NTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQS-V--PNG-DAILIKWILHDWSDE 95 (184)
Q Consensus 21 ~~~~ilDiG~G~G-~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~-~--~~~-D~i~~~~~l~~~~~~ 95 (184)
..++|+|+|-|.= ..+..|+++ ++.++.+|+.+. .++ .++.++..|+++| . -.+ |+|++. -+++
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~--~a~--~g~~~v~DDitnP~~~iY~~A~lIYSi-----Rppp 81 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK--TAP--EGLRFVVDDITNPNISIYEGADLIYSI-----RPPP 81 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc--cCc--ccceEEEccCCCccHHHhhCccceeec-----CCCH
Confidence 3569999999866 555556665 478899998222 332 7899999999984 2 233 998883 2555
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEe
Q 030025 96 HCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 96 ~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+....+=++.+.+ |..++|.-
T Consensus 82 El~~~ildva~aV--ga~l~I~p 102 (129)
T COG1255 82 ELQSAILDVAKAV--GAPLYIKP 102 (129)
T ss_pred HHHHHHHHHHHhh--CCCEEEEe
Confidence 5555555555554 44455543
No 300
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=93.03 E-value=0.69 Score=35.25 Aligned_cols=88 Identities=16% Similarity=0.123 Sum_probs=56.0
Q ss_pred CCeEEEecCC--cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEE-ccc-CccCCCCCEEEechhhhcCChHH
Q 030025 22 IKQLVDVGGS--LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVG-GDM-FQSVPNGDAILIKWILHDWSDEH 96 (184)
Q Consensus 22 ~~~ilDiG~G--~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~-~d~-~~~~~~~D~i~~~~~l~~~~~~~ 96 (184)
..+|+=+|.| -|.+++.+.+......+++.|. ...++.+.+. ++.... .+. ......+|+|+.+-.+. .
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-gv~d~~~~~~~~~~~~~aD~VivavPi~-----~ 76 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-GVIDELTVAGLAEAAAEADLVIVAVPIE-----A 76 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-CcccccccchhhhhcccCCEEEEeccHH-----H
Confidence 3567778877 4577777777777788899997 5555555433 222222 121 22333459998866665 4
Q ss_pred HHHHHHHHHhhCCCCcEEE
Q 030025 97 CLKLLKNCHKSIPEGGKVI 115 (184)
Q Consensus 97 ~~~~l~~~~~~L~pgG~l~ 115 (184)
...+++++...|+||..+.
T Consensus 77 ~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 77 TEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred HHHHHHHhcccCCCCCEEE
Confidence 4578999999898885543
No 301
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=93.01 E-value=0.25 Score=38.72 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=31.2
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhC----C----CCeEEEeec-hhHhhh
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKY----P----HIKGINFDL-PHVIQH 59 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~----~----~~~~~~~D~-~~~~~~ 59 (184)
.+..-.++|+|+|+|.++..+++.. | .+++..++. +...++
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~ 124 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRAR 124 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHH
Confidence 4556789999999999998888653 3 578888887 544443
No 302
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=92.94 E-value=1.4 Score=33.93 Aligned_cols=91 Identities=19% Similarity=0.219 Sum_probs=56.3
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCcc-------CC-CC-CEEEech
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQS-------VP-NG-DAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~~-~~-D~i~~~~ 87 (184)
+.+..+||..|+| .|..+..+++.. +.+++.++. +...+.+++.. +..+..+-... .+ .. |+++-+.
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~ 240 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKELG-ADEVLNSLDDSPKDKKAAGLGGGFDVIFDFV 240 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhC-CCEEEcCCCcCHHHHHHHhcCCCceEEEECC
Confidence 6677899998876 477777778775 467788876 66666554432 22222211111 11 22 7776432
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.. . ..++++.+.|+++|.++....
T Consensus 241 g~-----~---~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 241 GT-----Q---PTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CC-----H---HHHHHHHHHhhcCCEEEEECC
Confidence 11 1 368889999999999998643
No 303
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=92.93 E-value=1 Score=34.67 Aligned_cols=91 Identities=13% Similarity=0.049 Sum_probs=50.1
Q ss_pred CCCeEEEecCCc-C-hHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHH
Q 030025 21 HIKQLVDVGGSL-G-NTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHC 97 (184)
Q Consensus 21 ~~~~ilDiG~G~-G-~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~ 97 (184)
...+|.=||+|. | .++..+.+.....+++++|. +...+.+++..-......+..+.....|+|+..-... ..
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-----~~ 79 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-----AS 79 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-----HH
Confidence 346788898875 2 34444444322247888887 5555555443211111112111233449888755433 23
Q ss_pred HHHHHHHHhhCCCCcEEEE
Q 030025 98 LKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 98 ~~~l~~~~~~L~pgG~l~i 116 (184)
..+++++...++||..++.
T Consensus 80 ~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 80 GAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred HHHHHHHHhhCCCCCEEEe
Confidence 4567888888888876543
No 304
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=92.90 E-value=1.6 Score=33.14 Aligned_cols=121 Identities=12% Similarity=0.092 Sum_probs=71.0
Q ss_pred eEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-CCceEEEcccCc-cC---CCC-CEEEechhhhcCC---
Q 030025 24 QLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQ-SV---PNG-DAILIKWILHDWS--- 93 (184)
Q Consensus 24 ~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~-~~---~~~-D~i~~~~~l~~~~--- 93 (184)
+++|+-||.|..+..+.+.. --.+.++|. +.+++..+.+ ++. +...|+.+ .. ... |+++.......++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag 79 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAG 79 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCCCChhhhHHh
Confidence 68999999999988887764 235677888 7777665554 433 56677776 21 223 9998765444332
Q ss_pred -----hHHHHHHHHH---HHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCC
Q 030025 94 -----DEHCLKLLKN---CHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGF 165 (184)
Q Consensus 94 -----~~~~~~~l~~---~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 165 (184)
+++...++.+ +.+.++|. +++.|....-.. .........+.+.|++.||
T Consensus 80 ~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g~~~---------------------~~~~~~~~~i~~~l~~~GY 136 (275)
T cd00315 80 KRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKGLLT---------------------HDNGNTLKVILNTLEELGY 136 (275)
T ss_pred hcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcchhc---------------------cCchHHHHHHHHHHHhCCc
Confidence 1111223333 33334666 666664321110 0011246778888999998
Q ss_pred ceeE
Q 030025 166 SGIR 169 (184)
Q Consensus 166 ~~i~ 169 (184)
....
T Consensus 137 ~~~~ 140 (275)
T cd00315 137 NVYW 140 (275)
T ss_pred EEEE
Confidence 8543
No 305
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=92.60 E-value=1.7 Score=31.66 Aligned_cols=107 Identities=13% Similarity=0.140 Sum_probs=61.6
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcC----hHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-------CCceEEEcccCc-
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLG----NTLKAITSKYPHIKGINFDL-PHVIQHSPEY-------PGVKHVGGDMFQ- 75 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G----~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~i~~~~~d~~~- 75 (184)
..+++.++..--..+.|+++.|+.| .++...+.+..+.+++.+-. ++.+...++. +-++|+.++..+
T Consensus 29 ~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~ 108 (218)
T PF07279_consen 29 VAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEE 108 (218)
T ss_pred HHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHH
Confidence 4567777772335678999976544 33444445566777777754 3333222221 346888888543
Q ss_pred ---cCCCCCEEEechhhhcCChHHHH-HHHHHHHhhCCCCcEEEEEeeecC
Q 030025 76 ---SVPNGDAILIKWILHDWSDEHCL-KLLKNCHKSIPEGGKVIVVESVLP 122 (184)
Q Consensus 76 ---~~~~~D~i~~~~~l~~~~~~~~~-~~l~~~~~~L~pgG~l~i~~~~~~ 122 (184)
.+...|++++..=.+ +.. ++|+-+. +.|.|-+++......
T Consensus 109 ~~~~~~~iDF~vVDc~~~-----d~~~~vl~~~~--~~~~GaVVV~~Na~~ 152 (218)
T PF07279_consen 109 VMPGLKGIDFVVVDCKRE-----DFAARVLRAAK--LSPRGAVVVCYNAFS 152 (218)
T ss_pred HHhhccCCCEEEEeCCch-----hHHHHHHHHhc--cCCCceEEEEecccc
Confidence 233339988855433 333 5666443 556788888665543
No 306
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=92.48 E-value=0.16 Score=40.84 Aligned_cols=40 Identities=8% Similarity=0.020 Sum_probs=32.1
Q ss_pred CeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC
Q 030025 23 KQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY 63 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~ 63 (184)
-.|||||.|||.++.-..... .-.+++++. ..|.+.|++.
T Consensus 68 v~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI 108 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKI 108 (636)
T ss_pred EEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHH
Confidence 468999999999998666655 346889988 8899988873
No 307
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=92.34 E-value=0.93 Score=37.45 Aligned_cols=111 Identities=14% Similarity=0.134 Sum_probs=68.1
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCC----CCeEEEeec-hhHhhhCCCC------C-CceEEEccc
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYP----HIKGINFDL-PHVIQHSPEY------P-GVKHVGGDM 73 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~----~~~~~~~D~-~~~~~~a~~~------~-~i~~~~~d~ 73 (184)
+.+.+.|.+-+. ..+..+|+|-.||+|.+.....+... .+.+.|.+. +.....|+-. + .+....+|-
T Consensus 172 ~~v~~liv~~l~-~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dt 250 (489)
T COG0286 172 REVSELIVELLD-PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDT 250 (489)
T ss_pred HHHHHHHHHHcC-CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccccc
Confidence 456667777776 45667999999999988877776642 377899997 7666666543 2 233344443
Q ss_pred Cc-cCC----C---CCEEEechhhh--------------------c-C-C-hHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 74 FQ-SVP----N---GDAILIKWILH--------------------D-W-S-DEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 74 ~~-~~~----~---~D~i~~~~~l~--------------------~-~-~-~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
.. +.. . .|.|+++-.+. - + + ..+...++..+...|+|||+.-+.
T Consensus 251 l~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 251 LSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred ccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 33 221 1 15655533221 0 1 1 112257889999999998865553
No 308
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.32 E-value=1.5 Score=36.46 Aligned_cols=96 Identities=13% Similarity=0.148 Sum_probs=61.9
Q ss_pred CCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc--------------c-------
Q 030025 20 EHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ--------------S------- 76 (184)
Q Consensus 20 ~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~--------------~------- 76 (184)
.++.+|+=+||| .|..+...++.. +++++.+|. +.-++.+++. +.++...|..+ +
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 357899999999 566676677766 458999999 8888887765 33332211110 1
Q ss_pred -----CCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 77 -----VPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 77 -----~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
....|+++.....-.-+.+ ..+.++..+.+||||+++....
T Consensus 241 ~~~~~~~gaDVVIetag~pg~~aP--~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTALIPGKPAP--KLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCCCCcccCc--chHHHHHHHhcCCCCEEEEEcc
Confidence 0123888775543221122 1235999999999999887654
No 309
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=92.30 E-value=0.51 Score=38.24 Aligned_cols=101 Identities=18% Similarity=0.189 Sum_probs=60.4
Q ss_pred CCCeEEEecCCcChHHHHHHhhC--CCCeEEEeec-hhHhhhCCCC------CCceEEEc-ccCc---cC--CCC-CEEE
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKY--PHIKGINFDL-PHVIQHSPEY------PGVKHVGG-DMFQ---SV--PNG-DAIL 84 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~-d~~~---~~--~~~-D~i~ 84 (184)
.+..+.|+|+|.|.-.-.+.... ..-.++.||. ..|.....+. .+-.++.. -+.. +. .+. |+++
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 34678899988775554444333 2346788887 5666554332 11111222 1222 22 233 9999
Q ss_pred echhhhcCChH-HHHHHHHHHHh-hCCCCcEEEEEeeec
Q 030025 85 IKWILHDWSDE-HCLKLLKNCHK-SIPEGGKVIVVESVL 121 (184)
Q Consensus 85 ~~~~l~~~~~~-~~~~~l~~~~~-~L~pgG~l~i~~~~~ 121 (184)
+.+.+|+++.. ....+.+++++ ..++|+.+++.+...
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 99999998744 33355555555 478999999987643
No 310
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=92.25 E-value=0.29 Score=36.61 Aligned_cols=36 Identities=14% Similarity=0.265 Sum_probs=26.3
Q ss_pred CCeEEEecCCcChHHHHHHhhC--------CCCeEEEeec-hhHh
Q 030025 22 IKQLVDVGGSLGNTLKAITSKY--------PHIKGINFDL-PHVI 57 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~--------~~~~~~~~D~-~~~~ 57 (184)
.-+|+|+|+|+|.++..+++.. ..++++.++. +.+.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~ 63 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLR 63 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCH
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHH
Confidence 4799999999999999998764 2368999997 4433
No 311
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=91.83 E-value=1.6 Score=33.59 Aligned_cols=86 Identities=17% Similarity=0.218 Sum_probs=52.2
Q ss_pred CCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCC-CEEEechhhhcCChHHH
Q 030025 21 HIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNG-DAILIKWILHDWSDEHC 97 (184)
Q Consensus 21 ~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~-D~i~~~~~l~~~~~~~~ 97 (184)
+..++|=+||| .|.++..+++......++.+|. +..++.+....-+ |..+..+.. |+|+-.. ..+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i-----~~~~~~~~g~Dvvid~~-----G~~-- 211 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVL-----DPEKDPRRDYRAIYDAS-----GDP-- 211 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcccc-----ChhhccCCCCCEEEECC-----CCH--
Confidence 45678888876 5667777777764444667776 5566555432111 111111223 7776532 222
Q ss_pred HHHHHHHHhhCCCCcEEEEEee
Q 030025 98 LKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 98 ~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
..++.+.+.++|+|++++...
T Consensus 212 -~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 212 -SLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred -HHHHHHHHhhhcCcEEEEEee
Confidence 357888999999999998664
No 312
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=91.67 E-value=1.9 Score=33.62 Aligned_cols=94 Identities=12% Similarity=0.049 Sum_probs=54.0
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhh-CCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChH
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSK-YPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDE 95 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~ 95 (184)
..+..+||=+||| .|..+..++++ ....+++++|. +.-++.+++. +..+...+..+.. ..|+|+=..- .. ..
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~-~~~~~~~~~~~~~-g~d~viD~~G-~~-~~- 235 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFA-DETYLIDDIPEDL-AVDHAFECVG-GR-GS- 235 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhc-Cceeehhhhhhcc-CCcEEEECCC-CC-cc-
Confidence 4567899999976 44455556665 44567888887 6555665542 2211111111111 1276653221 10 01
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEee
Q 030025 96 HCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 96 ~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
...++...+.|+|||++++...
T Consensus 236 --~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 236 --QSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred --HHHHHHHHHhCcCCcEEEEEee
Confidence 1468889999999999998764
No 313
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=91.34 E-value=0.35 Score=39.30 Aligned_cols=90 Identities=12% Similarity=0.125 Sum_probs=51.7
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEE------Eeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCC
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGI------NFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWS 93 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~------~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~ 93 (184)
..++|+=||||+=..+.++--+-..++++ ++|. +...+.|.+ +++ ...+..+..+.+|+|++...
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~-dGF--~v~~~~Ea~~~ADvVviLlP----- 106 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATE-NGF--KVGTYEELIPQADLVINLTP----- 106 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHh-cCC--ccCCHHHHHHhCCEEEEcCC-----
Confidence 46899999999655443333332333443 2332 223333222 223 22333334455699988443
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 94 DEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 94 ~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+.....+.+++...||||..|.++.
T Consensus 107 Dt~q~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 107 DKQHSDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEecC
Confidence 3334467899999999999999864
No 314
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=91.29 E-value=3.7 Score=28.70 Aligned_cols=119 Identities=20% Similarity=0.193 Sum_probs=67.7
Q ss_pred ecCCcChHHHHHHhhCC-CCeEEEe--ec-hhHhhhCCC---------CCCceE-EEcccCc---cC--CCC--CEEEec
Q 030025 28 VGGSLGNTLKAITSKYP-HIKGINF--DL-PHVIQHSPE---------YPGVKH-VGGDMFQ---SV--PNG--DAILIK 86 (184)
Q Consensus 28 iG~G~G~~~~~l~~~~~-~~~~~~~--D~-~~~~~~a~~---------~~~i~~-~~~d~~~---~~--~~~--D~i~~~ 86 (184)
||=|.=+++..|++.+. ..++++. |. .+..+.... ..++.+ ..-|+.+ .+ ... |.|+.+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 56666677888888876 4444444 43 323322221 123332 3445554 22 222 999987
Q ss_pred hhhhcC-----------ChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHH
Q 030025 87 WILHDW-----------SDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHE 155 (184)
Q Consensus 87 ~~l~~~-----------~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (184)
+.---. ...-...+|+.+.++|+++|.+.|+-...+ .|+.=.
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~---------------------------py~~W~ 135 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ---------------------------PYDSWN 135 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC---------------------------CCcccc
Confidence 763320 011234688999999999999999543221 123334
Q ss_pred HHHHHHHcCCceeEEEee
Q 030025 156 FTTLATEAGFSGIRFVCF 173 (184)
Q Consensus 156 ~~~~l~~aGf~~i~~~~~ 173 (184)
+.++.+++||..++..+-
T Consensus 136 i~~lA~~~gl~l~~~~~F 153 (166)
T PF10354_consen 136 IEELAAEAGLVLVRKVPF 153 (166)
T ss_pred HHHHHHhcCCEEEEEecC
Confidence 457778899988876654
No 315
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=90.93 E-value=3 Score=32.50 Aligned_cols=93 Identities=15% Similarity=0.115 Sum_probs=54.6
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEE---cccCc-c-CCCC-CEEEechhhh
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVG---GDMFQ-S-VPNG-DAILIKWILH 90 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~---~d~~~-~-~~~~-D~i~~~~~l~ 90 (184)
..+..+||=.||| .|..+..+++.....+++++|. +.-++.+++..--.++. .++.+ . .... |+|+-..
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~--- 243 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVS--- 243 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECC---
Confidence 3456788888876 4566666666653336888887 66667766642111111 11111 0 1112 7765432
Q ss_pred cCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 91 DWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 91 ~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
..+ ..++.+.+.|+|||++++...
T Consensus 244 --G~~---~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 244 --GHP---SSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred --CCH---HHHHHHHHHhhcCCEEEEEcc
Confidence 222 357788899999999998764
No 316
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=90.81 E-value=1.1 Score=29.84 Aligned_cols=87 Identities=21% Similarity=0.293 Sum_probs=46.3
Q ss_pred CCCeEEEecCCcC-hHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccC----CCCCEEEechhhhcCCh
Q 030025 21 HIKQLVDVGGSLG-NTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSV----PNGDAILIKWILHDWSD 94 (184)
Q Consensus 21 ~~~~ilDiG~G~G-~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~----~~~D~i~~~~~l~~~~~ 94 (184)
+.++|+|||-|.= ..+..|.+. ++.++++|+ +. .+. .++.++..|+++|- .++|+|++... +
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~---~a~--~g~~~v~DDif~P~l~iY~~a~lIYSiRP-----P 80 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR---KAP--EGVNFVVDDIFNPNLEIYEGADLIYSIRP-----P 80 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S---------STTEE---SSS--HHHHTTEEEEEEES-------
T ss_pred CCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc---ccc--cCcceeeecccCCCHHHhcCCcEEEEeCC-----C
Confidence 3569999999866 445555554 489999998 44 222 78999999999842 23399988554 3
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 95 EHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 95 ~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
+|...-+-++.+.. |.-+++.....
T Consensus 81 ~El~~~il~lA~~v--~adlii~pL~~ 105 (127)
T PF03686_consen 81 PELQPPILELAKKV--GADLIIRPLGG 105 (127)
T ss_dssp TTSHHHHHHHHHHH--T-EEEEE-BTT
T ss_pred hHHhHHHHHHHHHh--CCCEEEECCCC
Confidence 33344455566554 56677755433
No 317
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=90.19 E-value=4.2 Score=32.82 Aligned_cols=98 Identities=10% Similarity=0.119 Sum_probs=55.3
Q ss_pred CCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec--hhHhhhCCCCCCceEEEcccCc-cCCCCCEEEechh-hhcCChH
Q 030025 21 HIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL--PHVIQHSPEYPGVKHVGGDMFQ-SVPNGDAILIKWI-LHDWSDE 95 (184)
Q Consensus 21 ~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~--~~~~~~a~~~~~i~~~~~d~~~-~~~~~D~i~~~~~-l~~~~~~ 95 (184)
..+++|=||.| .|......+....-.+++...- ....+.|++.. ..+...+-.. .+..+|+|+++.. -|.+-..
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~-~~~~~l~el~~~l~~~DvVissTsa~~~ii~~ 255 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG-AEAVALEELLEALAEADVVISSTSAPHPIITR 255 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC-CeeecHHHHHHhhhhCCEEEEecCCCccccCH
Confidence 67899999999 7766555554443345565553 45555565554 4444444332 3445699988643 3333222
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEeeecCCCC
Q 030025 96 HCLKLLKNCHKSIPEGGKVIVVESVLPELP 125 (184)
Q Consensus 96 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~ 125 (184)
..+.++.+.=+. +++.|...|.+-
T Consensus 256 ---~~ve~a~~~r~~---~livDiavPRdi 279 (414)
T COG0373 256 ---EMVERALKIRKR---LLIVDIAVPRDV 279 (414)
T ss_pred ---HHHHHHHhcccC---eEEEEecCCCCC
Confidence 234433333222 888898877653
No 318
>PRK11524 putative methyltransferase; Provisional
Probab=90.00 E-value=0.71 Score=35.22 Aligned_cols=54 Identities=15% Similarity=0.043 Sum_probs=42.8
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY 63 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~ 63 (184)
..+...++.... .++..|||-=||+|.++.+..+. +-+++|+|+ ++.++.|+++
T Consensus 195 ~~L~erlI~~~S--~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 195 EALLKRIILASS--NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRR 249 (284)
T ss_pred HHHHHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHH
Confidence 456677777765 67889999999999999876665 568999999 8888877655
No 319
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=89.72 E-value=2.8 Score=31.76 Aligned_cols=99 Identities=15% Similarity=0.135 Sum_probs=69.1
Q ss_pred cHHhHHHHHHHhcC------CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCccCC
Q 030025 5 TTLVLQKILEAYKG------FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQSVP 78 (184)
Q Consensus 5 ~~~~~~~l~~~~~~------~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~ 78 (184)
+..+-..+...++. +.+++..+|+|.-.|.++-.+.++ +..++.+|...|.+.....+.++....|-++..|
T Consensus 189 tLKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P 266 (358)
T COG2933 189 TLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRP 266 (358)
T ss_pred hhhHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhc--ceEEEEeccchhhhhhhcccceeeeeccCccccc
Confidence 33444555555551 457789999999999999999888 6899999986666555556788999888887333
Q ss_pred --CC-CEEEechhhhcCChHHHHHHHHHHHhhCCCC
Q 030025 79 --NG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEG 111 (184)
Q Consensus 79 --~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pg 111 (184)
.. |-.+|..+ +.+. ++-..+..+|..|
T Consensus 267 ~r~~idWmVCDmV----EkP~--rv~~li~~Wl~nG 296 (358)
T COG2933 267 TRSNIDWMVCDMV----EKPA--RVAALIAKWLVNG 296 (358)
T ss_pred CCCCCceEEeehh----cCcH--HHHHHHHHHHHcc
Confidence 33 77777444 3333 5566677777655
No 320
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=89.60 E-value=0.42 Score=30.84 Aligned_cols=81 Identities=20% Similarity=0.233 Sum_probs=49.7
Q ss_pred CCcChHHHHHHhhC--CCCeEEEeec-hhHhhhCCCCCCceEEEcccCcc--C-----CCCCEEEechhhhcCChHHHHH
Q 030025 30 GSLGNTLKAITSKY--PHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQS--V-----PNGDAILIKWILHDWSDEHCLK 99 (184)
Q Consensus 30 ~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~--~-----~~~D~i~~~~~l~~~~~~~~~~ 99 (184)
||.|..+..+++.. ....++.+|. ++..+.+++. .+.++.+|..++ + .++|.+++..- +++.-.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-----~d~~n~ 77 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-GVEVIYGDATDPEVLERAGIEKADAVVILTD-----DDEENL 77 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-TSEEEES-TTSHHHHHHTTGGCESEEEEESS-----SHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-ccccccccchhhhHHhhcCccccCEEEEccC-----CHHHHH
Confidence 67777888777663 3347999998 6666665543 388999999872 2 22376666332 233333
Q ss_pred HHHHHHhhCCCCcEEEE
Q 030025 100 LLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 100 ~l~~~~~~L~pgG~l~i 116 (184)
.+-...+.+.|..+++.
T Consensus 78 ~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 78 LIALLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHCCCCeEEE
Confidence 44455566677777766
No 321
>PHA01634 hypothetical protein
Probab=89.19 E-value=0.59 Score=31.19 Aligned_cols=41 Identities=10% Similarity=0.069 Sum_probs=33.1
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE 62 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~ 62 (184)
.+++|+|||.+.|..+..++.+.. -.++.++. +...+..++
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~~ee 69 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKKWEE 69 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHHHHH
Confidence 578999999999999999998853 47888887 666666654
No 322
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=89.02 E-value=1.5 Score=35.35 Aligned_cols=103 Identities=20% Similarity=0.275 Sum_probs=70.0
Q ss_pred CCCeEEEec-CCcC------hHHHHHHhhCCCCeEEEeec--hhHhhhCCCC---CCceEEEcccCc-cC----------
Q 030025 21 HIKQLVDVG-GSLG------NTLKAITSKYPHIKGINFDL--PHVIQHSPEY---PGVKHVGGDMFQ-SV---------- 77 (184)
Q Consensus 21 ~~~~ilDiG-~G~G------~~~~~l~~~~~~~~~~~~D~--~~~~~~a~~~---~~i~~~~~d~~~-~~---------- 77 (184)
++..|+=+| =|+| -++.++.++...+-++..|+ |.+++..+.. -++.|...+-.+ |.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 456788888 3444 44445555445566788887 7777766654 567777654333 42
Q ss_pred -CCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 78 -PNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 78 -~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
... |+|++-.+--|--+++.-.-+++++..++|.-+|++.|.....
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQ 226 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQ 226 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccch
Confidence 122 9999977665555677778889999999999999999875543
No 323
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=88.98 E-value=3.1 Score=31.61 Aligned_cols=83 Identities=14% Similarity=0.063 Sum_probs=46.9
Q ss_pred eEEEecCCc--ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHHHH
Q 030025 24 QLVDVGGSL--GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKL 100 (184)
Q Consensus 24 ~ilDiG~G~--G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~~~ 100 (184)
+|.=||+|. |.++..+.+. +.+++++|. +...+.+.+...+.....+. +....+|+|+..-. .....++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVilavp-----~~~~~~~ 73 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVILALP-----IGLLLPP 73 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEEcCC-----HHHHHHH
Confidence 466677773 3455555444 458899997 66665554432222111111 12233498887544 3344567
Q ss_pred HHHHHhhCCCCcEE
Q 030025 101 LKNCHKSIPEGGKV 114 (184)
Q Consensus 101 l~~~~~~L~pgG~l 114 (184)
++++...++|+-.+
T Consensus 74 ~~~l~~~l~~~~ii 87 (279)
T PRK07417 74 SEQLIPALPPEAIV 87 (279)
T ss_pred HHHHHHhCCCCcEE
Confidence 88888888877433
No 324
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=88.83 E-value=7.6 Score=28.51 Aligned_cols=97 Identities=12% Similarity=0.091 Sum_probs=56.2
Q ss_pred HhcCCCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc---c----CCCC-CEEE
Q 030025 15 AYKGFEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ---S----VPNG-DAIL 84 (184)
Q Consensus 15 ~~~~~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~----~~~~-D~i~ 84 (184)
.+....+..+||..|+|. |..+..+++.. +.+++.++. +...+.+++...-..+.....+ . .... |+++
T Consensus 128 ~~~~~~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi 206 (271)
T cd05188 128 RAGVLKPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVI 206 (271)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEE
Confidence 333246788999999985 66777677765 478888876 5555544333111111111001 0 0123 8877
Q ss_pred echhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 85 IKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 85 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
.... .. ..+..+.+.|+++|.++.....
T Consensus 207 ~~~~-----~~---~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 207 DAVG-----GP---ETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred ECCC-----CH---HHHHHHHHhcccCCEEEEEccC
Confidence 5322 11 3477788899999999986543
No 325
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=88.81 E-value=9.4 Score=29.55 Aligned_cols=123 Identities=14% Similarity=0.144 Sum_probs=60.8
Q ss_pred CCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hh-HhhhCCCCCCceEEEcc-cCccCCCCCEEEechhhhcCChH
Q 030025 20 EHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PH-VIQHSPEYPGVKHVGGD-MFQSVPNGDAILIKWILHDWSDE 95 (184)
Q Consensus 20 ~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~-~~~~a~~~~~i~~~~~d-~~~~~~~~D~i~~~~~l~~~~~~ 95 (184)
-+..+|+-+|+| .|......+......+++.++. +. ..+.+++... .....+ ..+.....|+|++...--+.
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~-~~~~~~~~~~~l~~aDvVi~at~~~~~--- 251 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG-NAVPLDELLELLNEADVVISATGAPHY--- 251 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC-eEEeHHHHHHHHhcCCEEEECCCCCch---
Confidence 357899999886 3333333333322346777776 33 3344444432 333222 12223345999886554332
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHH
Q 030025 96 HCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATE 162 (184)
Q Consensus 96 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (184)
..++..+.+.. +++..++.|...|..-..... . .++...++.++|.+..++
T Consensus 252 --~~~~~~~~~~~-~~~~~~viDlavPrdi~~~v~-------~------l~~v~l~~vDdl~~~~~~ 302 (311)
T cd05213 252 --AKIVERAMKKR-SGKPRLIVDLAVPRDIEPEVG-------E------LEGVRLYTIDDLEEVVEE 302 (311)
T ss_pred --HHHHHHHHhhC-CCCCeEEEEeCCCCCCchhhc-------c------CCCcEEEEHHHhHHHHHH
Confidence 13344443333 344456667766543221110 0 123445677777776654
No 326
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=88.65 E-value=1.6 Score=34.42 Aligned_cols=35 Identities=9% Similarity=0.069 Sum_probs=27.4
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCC-C---CeEEEeec
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYP-H---IKGINFDL 53 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~-~---~~~~~~D~ 53 (184)
++++.+|||..+-.|.-+..+++... . ..++.-|.
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~ 191 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDV 191 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEeccc
Confidence 77999999999999999988888842 2 14566664
No 327
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=88.61 E-value=4.1 Score=32.95 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=60.4
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEe
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILI 85 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~ 85 (184)
..+.+.+..+..-+.++|+=+|+|. |......++.. +++++.+|. +.-.+.|+.. ++... +..+.....|+|+.
T Consensus 188 ~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~~-G~~~~--~~~e~v~~aDVVI~ 263 (413)
T cd00401 188 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAME-GYEVM--TMEEAVKEGDIFVT 263 (413)
T ss_pred hHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHhc-CCEEc--cHHHHHcCCCEEEE
Confidence 4566666666334678999999995 54444455544 568888987 5555555443 23222 12122333498876
Q ss_pred chhhhcCChHHHHHHHHH-HHhhCCCCcEEEEEe
Q 030025 86 KWILHDWSDEHCLKLLKN-CHKSIPEGGKVIVVE 118 (184)
Q Consensus 86 ~~~l~~~~~~~~~~~l~~-~~~~L~pgG~l~i~~ 118 (184)
.. ..+ .++.. ..+.+||||+++...
T Consensus 264 at-----G~~---~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 264 TT-----GNK---DIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CC-----CCH---HHHHHHHHhcCCCCcEEEEeC
Confidence 42 222 34655 488999999998765
No 328
>PF06557 DUF1122: Protein of unknown function (DUF1122); InterPro: IPR008304 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2ARH_C.
Probab=88.43 E-value=2.8 Score=29.04 Aligned_cols=60 Identities=18% Similarity=0.192 Sum_probs=29.9
Q ss_pred HHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEeec
Q 030025 98 LKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 98 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
..+++-+.+.|.|||++++. .. .+ ......+. -+...-...+-..|.++||+.++-+..+
T Consensus 66 ~~l~~~~~~~l~pg~~lfVe-Y~-~D------------~eT~~~L~---~G~pp~~TrLG~~Ll~~GFtwfKdWYfP 125 (170)
T PF06557_consen 66 DELYKLFSRYLEPGGRLFVE-YV-ED------------RETRRQLQ---RGVPPAETRLGFSLLKAGFTWFKDWYFP 125 (170)
T ss_dssp HHHHHHHHTT----SEEEEE--T-T-------------HHHHHHHH---TT--GGGSHHHHHHHTTT--EEEEEE--
T ss_pred HHHHHHHHHHhhhcCeEEEE-Ee-cC------------HHHHHHHH---cCCCcccchhHHHHHhCCcEEEeeeecc
Confidence 58999999999999999882 11 11 11111111 1112223345567899999999988765
No 329
>PRK13699 putative methylase; Provisional
Probab=88.34 E-value=1.2 Score=32.81 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=41.1
Q ss_pred HHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC
Q 030025 6 TLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY 63 (184)
Q Consensus 6 ~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~ 63 (184)
..+.+.++..+. .++..|||-=||+|.++.+..+. +-+++|+|+ +...+.+.++
T Consensus 150 ~~l~~~~i~~~s--~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r 204 (227)
T PRK13699 150 VTSLQPLIESFT--HPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQR 204 (227)
T ss_pred HHHHHHHHHHhC--CCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHH
Confidence 456677777655 56789999999999999877665 568899998 7777666543
No 330
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.93 E-value=3.6 Score=31.95 Aligned_cols=118 Identities=16% Similarity=0.152 Sum_probs=67.2
Q ss_pred EEEecCCcChHHHHHHhhCCCCe-EEEeec-hhHhhhCCC-CCCceEEEcccCc-c---CCCCCEEEechhhhcCC----
Q 030025 25 LVDVGGSLGNTLKAITSKYPHIK-GINFDL-PHVIQHSPE-YPGVKHVGGDMFQ-S---VPNGDAILIKWILHDWS---- 93 (184)
Q Consensus 25 ilDiG~G~G~~~~~l~~~~~~~~-~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~---~~~~D~i~~~~~l~~~~---- 93 (184)
|+|+=||.|..+.-+.+.. .+ +.++|. +.+.+.-+. +++ .+..+|+.+ . +++.|+++.......++
T Consensus 1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~ 77 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGK 77 (315)
T ss_pred CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEecCCCcccchhcc
Confidence 5899999999998887763 34 456887 655554443 344 555677776 2 33348887654444332
Q ss_pred ----hHHHHHHHHHHHhh---CCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCc
Q 030025 94 ----DEHCLKLLKNCHKS---IPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFS 166 (184)
Q Consensus 94 ----~~~~~~~l~~~~~~---L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 166 (184)
++....++.++.++ ++|. +++.|....- .. . ........+.+.|++.||.
T Consensus 78 ~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~l-------------~~------~--~~~~~~~~i~~~l~~~GY~ 134 (315)
T TIGR00675 78 RKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVKGL-------------VS------H--DKGRTFKVIIETLEELGYK 134 (315)
T ss_pred cCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccHHH-------------Hh------c--ccchHHHHHHHHHHhCCCE
Confidence 12222344444444 4675 5665543211 00 0 0012356778888999987
Q ss_pred ee
Q 030025 167 GI 168 (184)
Q Consensus 167 ~i 168 (184)
..
T Consensus 135 v~ 136 (315)
T TIGR00675 135 VY 136 (315)
T ss_pred EE
Confidence 64
No 331
>PRK13699 putative methylase; Provisional
Probab=87.87 E-value=1.8 Score=31.93 Aligned_cols=19 Identities=0% Similarity=0.020 Sum_probs=16.9
Q ss_pred HHHHHHHHhhCCCCcEEEE
Q 030025 98 LKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 98 ~~~l~~~~~~L~pgG~l~i 116 (184)
..++++++|+|||||.+++
T Consensus 52 ~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVS 70 (227)
T ss_pred HHHHHHHHHHcCCCCEEEE
Confidence 4789999999999998876
No 332
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=87.51 E-value=1.1 Score=34.18 Aligned_cols=78 Identities=19% Similarity=0.298 Sum_probs=45.5
Q ss_pred CceEEEcccCccCC------CC-CEEEech-hhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhh
Q 030025 65 GVKHVGGDMFQSVP------NG-DAILIKW-ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSL 136 (184)
Q Consensus 65 ~i~~~~~d~~~~~~------~~-D~i~~~~-~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~ 136 (184)
+|+|+..|....++ +. |+|++++ ..|.+.+. +.++++|+|.|++-..-. +
T Consensus 201 kVhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~vh~L~p~--------l~~~~a~~A~LvvEtaKf--------------m 258 (289)
T PF14740_consen 201 KVHFLPLDSLEKLPHKSKYQNFFDLIFVSCSMVHFLKPE--------LFQALAPDAVLVVETAKF--------------M 258 (289)
T ss_pred EEEEeCchHHHHHhhHHhhcCCCCEEEEhhhhHhhcchH--------HHHHhCCCCEEEEEcchh--------------h
Confidence 36777777655221 22 9986655 45544432 677889999988844211 1
Q ss_pred hhhHhhhhCCCccccCHHHHHHHHHHcCCceeE
Q 030025 137 ADVLVMTQYPGGKERTKHEFTTLATEAGFSGIR 169 (184)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~ 169 (184)
.++.. ....--.+.+.++++++||+...
T Consensus 259 vdLrK-----Eq~~~F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 259 VDLRK-----EQLQEFVKKVKELAKAAGFKPVT 286 (289)
T ss_pred eeCCH-----HHHHHHHHHHHHHHHHCCCcccc
Confidence 11000 00011367889999999998764
No 333
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=87.33 E-value=3.5 Score=32.60 Aligned_cols=111 Identities=16% Similarity=0.156 Sum_probs=75.9
Q ss_pred ccHHhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---C---CceEEEcccCcc
Q 030025 4 HTTLVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---P---GVKHVGGDMFQS 76 (184)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~---~i~~~~~d~~~~ 76 (184)
+++++.-.+++.+. -....+|+|-=||||--+.+++...+..+++.-|+ |.+.+..+++ + +...+..|+..-
T Consensus 36 ~NRDlsV~~l~~~~-~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~l 114 (380)
T COG1867 36 FNRDLSVLVLKAFG-KLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANAL 114 (380)
T ss_pred hccchhHHHHHHhh-ccCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHH
Confidence 34555556666665 22378999999999999999999988889999999 9888888765 2 333344454431
Q ss_pred C---CCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 77 V---PNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 77 ~---~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
. ... |+|=+ .-+..+ ..++..+.+..+.||.|.++-...
T Consensus 115 m~~~~~~fd~IDi----DPFGSP--aPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 115 LHELHRAFDVIDI----DPFGSP--APFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred HHhcCCCccEEec----CCCCCC--chHHHHHHHHhhcCCEEEEEeccc
Confidence 1 112 55532 122333 368999999999999999865443
No 334
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=86.68 E-value=12 Score=28.98 Aligned_cols=90 Identities=11% Similarity=0.046 Sum_probs=54.9
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCC-CEEEechhhhcCChH
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNG-DAILIKWILHDWSDE 95 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~-D~i~~~~~l~~~~~~ 95 (184)
+++..+||=.|+| .|..+..+++.. +++++.++. ++-.+.+++.. ++.+. |..+..+.. |+++..... .
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~G-a~~vi-~~~~~~~~~~d~~i~~~~~-----~ 234 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALALG-AASAG-GAYDTPPEPLDAAILFAPA-----G 234 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHhC-Cceec-cccccCcccceEEEECCCc-----H
Confidence 6778899999965 455556666665 567888876 55566665542 22111 111111122 765543221 1
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEee
Q 030025 96 HCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 96 ~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
..+....+.|++||++++...
T Consensus 235 ---~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 235 ---GLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ---HHHHHHHHhhCCCcEEEEEec
Confidence 358888899999999998764
No 335
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=86.62 E-value=3 Score=30.71 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=32.8
Q ss_pred HhHHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEee
Q 030025 7 LVLQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFD 52 (184)
Q Consensus 7 ~~~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D 52 (184)
.+.+++.++.. .-...-|.+||.|.|.+++.++... ...-++..|
T Consensus 37 ~lT~KIvK~A~-~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D 82 (326)
T KOG0821|consen 37 RLTDKIVKKAG-NLTNAYVYEIGPGPGGITRSILNADVARLLVVEKD 82 (326)
T ss_pred HHHHHHHHhcc-ccccceeEEecCCCCchhHHHHhcchhheeeeeec
Confidence 45677777766 5566789999999999999999763 233444455
No 336
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=86.47 E-value=1.4 Score=33.53 Aligned_cols=108 Identities=16% Similarity=0.036 Sum_probs=58.9
Q ss_pred cHHhHHHHHHHh--cCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCC----------------
Q 030025 5 TTLVLQKILEAY--KGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPG---------------- 65 (184)
Q Consensus 5 ~~~~~~~l~~~~--~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~---------------- 65 (184)
+-.+...+.+++ ...-..++|||+|||+|-......... .+.+...|. ...++ ..+.++
T Consensus 98 S~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~-~~~~~fqD~na~vl~-~~t~pn~~~~~~~~~~~~e~~~ 175 (282)
T KOG2920|consen 98 SVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKG-AVSVHFQDFNAEVLR-LVTLPNILVNSHAGVEEKENHK 175 (282)
T ss_pred HHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhc-cceeeeEecchhhee-eecccceecchhhhhhhhhccc
Confidence 445666666665 212367899999999998887766653 245555555 23321 111111
Q ss_pred c-eEEEc---ccCc-cCC--CCCEEEechhhhcCChHHHHHH-HHHHHhhCCCCcEEEE
Q 030025 66 V-KHVGG---DMFQ-SVP--NGDAILIKWILHDWSDEHCLKL-LKNCHKSIPEGGKVIV 116 (184)
Q Consensus 66 i-~~~~~---d~~~-~~~--~~D~i~~~~~l~~~~~~~~~~~-l~~~~~~L~pgG~l~i 116 (184)
+ ..... |-.- ... .+|+|.++-+++.....+ .+ ......+++++|.++.
T Consensus 176 ~~~i~~s~l~dg~~~~t~~~~ydlIlsSetiy~~~~~~--~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 176 VDEILNSLLSDGVFNHTERTHYDLILSSETIYSIDSLA--VLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred ceeccccccccchhhhccccchhhhhhhhhhhCcchhh--hhHhhhhhhcCCccchhhh
Confidence 1 01111 1100 112 238888888888755433 22 4455566788887766
No 337
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=86.14 E-value=6.2 Score=33.61 Aligned_cols=86 Identities=14% Similarity=0.097 Sum_probs=52.0
Q ss_pred CeEEEecCCcChHHHHHHhhC--CCCeEEEeec-hhHhhhCCCCCCceEEEcccCcc--C-----CCCCEEEechhhhcC
Q 030025 23 KQLVDVGGSLGNTLKAITSKY--PHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQS--V-----PNGDAILIKWILHDW 92 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~--~-----~~~D~i~~~~~l~~~ 92 (184)
.+|+=+ |.|..++.+++.. .+..++.+|. ++.++.+++ .+...+.+|..++ + .++|++++..
T Consensus 401 ~~vII~--G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vv~~~----- 472 (601)
T PRK03659 401 PQVIIV--GFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-YGYKVYYGDATQLELLRAAGAEKAEAIVITC----- 472 (601)
T ss_pred CCEEEe--cCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-CCCeEEEeeCCCHHHHHhcCCccCCEEEEEe-----
Confidence 455555 4555555555432 3568899998 888877765 4678899999872 2 2337666522
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 93 SDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 93 ~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
++++....+-...|.+.|..+++.
T Consensus 473 ~d~~~n~~i~~~~r~~~p~~~Iia 496 (601)
T PRK03659 473 NEPEDTMKIVELCQQHFPHLHILA 496 (601)
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEE
Confidence 222222233344555778888776
No 338
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=86.01 E-value=1.2 Score=30.84 Aligned_cols=83 Identities=17% Similarity=0.157 Sum_probs=42.7
Q ss_pred EEEecCCcChHHHHHHhhC--CCCeEEEeec-hhHhhhCCCCCCceEEEcccCccC-CCCCEEEechhhhcCChHHHHHH
Q 030025 25 LVDVGGSLGNTLKAITSKY--PHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSV-PNGDAILIKWILHDWSDEHCLKL 100 (184)
Q Consensus 25 ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~-~~~D~i~~~~~l~~~~~~~~~~~ 100 (184)
|-=||+ |.....++++. ...++++.|. ++..+...+. + ....+-..+. ...|+|++... .+++...+
T Consensus 4 Ig~IGl--G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~-g--~~~~~s~~e~~~~~dvvi~~v~----~~~~v~~v 74 (163)
T PF03446_consen 4 IGFIGL--GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA-G--AEVADSPAEAAEQADVVILCVP----DDDAVEAV 74 (163)
T ss_dssp EEEE----SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT-T--EEEESSHHHHHHHBSEEEE-SS----SHHHHHHH
T ss_pred EEEEch--HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh-h--hhhhhhhhhHhhcccceEeecc----cchhhhhh
Confidence 344555 55555555552 3568888997 5544443322 2 2222211111 22388877332 33455677
Q ss_pred HHH--HHhhCCCCcEEEE
Q 030025 101 LKN--CHKSIPEGGKVIV 116 (184)
Q Consensus 101 l~~--~~~~L~pgG~l~i 116 (184)
+.. +...|++|..++-
T Consensus 75 ~~~~~i~~~l~~g~iiid 92 (163)
T PF03446_consen 75 LFGENILAGLRPGKIIID 92 (163)
T ss_dssp HHCTTHGGGS-TTEEEEE
T ss_pred hhhhHHhhccccceEEEe
Confidence 888 8888887766554
No 339
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=86.01 E-value=1.2 Score=29.23 Aligned_cols=82 Identities=16% Similarity=0.111 Sum_probs=53.2
Q ss_pred CcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-------cCCC-C-CEEEechhhhcCChHHHHHH
Q 030025 31 SLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-------SVPN-G-DAILIKWILHDWSDEHCLKL 100 (184)
Q Consensus 31 G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-------~~~~-~-D~i~~~~~l~~~~~~~~~~~ 100 (184)
|.|..+..+++... .+++++|. +.-++.+++..--.++..+-.+ ..+. . |+|+-+.. .+ ..
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-----~~---~~ 71 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-----SG---DT 71 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-----SH---HH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC-----cH---HH
Confidence 45778888888876 89999998 6667777665322222222211 1222 3 77655322 22 46
Q ss_pred HHHHHhhCCCCcEEEEEeeec
Q 030025 101 LKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 101 l~~~~~~L~pgG~l~i~~~~~ 121 (184)
++...++++|+|++++.....
T Consensus 72 ~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 72 LQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHhccCCEEEEEEccC
Confidence 999999999999999977554
No 340
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.96 E-value=12 Score=27.67 Aligned_cols=78 Identities=15% Similarity=0.111 Sum_probs=49.0
Q ss_pred CCCCeEEEecCCcChHHHHHHhhC--CCCeEEEeec--hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChH
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKY--PHIKGINFDL--PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDE 95 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~--~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~ 95 (184)
+..+.||-.||..|.+..++++.+ .++.+....- +.|-+.+.+ .++.....|..+ ++
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~-~gl~~~kLDV~~------------------~~ 65 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ-FGLKPYKLDVSK------------------PE 65 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh-hCCeeEEeccCC------------------hH
Confidence 456789999999999999999886 3455555542 445444322 235555555443 33
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEe
Q 030025 96 HCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 96 ~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
+..++..+++.. |+|+|=+.-
T Consensus 66 ~V~~v~~evr~~--~~Gkld~L~ 86 (289)
T KOG1209|consen 66 EVVTVSGEVRAN--PDGKLDLLY 86 (289)
T ss_pred HHHHHHHHHhhC--CCCceEEEE
Confidence 445666766665 788775533
No 341
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=85.68 E-value=0.82 Score=33.05 Aligned_cols=41 Identities=12% Similarity=0.016 Sum_probs=30.5
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCC
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSP 61 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~ 61 (184)
-.++..|||.=||+|.++.+..+. +-+++|+|+ +...+.|+
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhc
Confidence 346789999999999999887776 457999999 77777653
No 342
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=84.98 E-value=7.5 Score=31.10 Aligned_cols=91 Identities=14% Similarity=0.098 Sum_probs=56.0
Q ss_pred CeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCC----CCCce---EEEcccCccCCCC-CEEEechhhhcCCh
Q 030025 23 KQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPE----YPGVK---HVGGDMFQSVPNG-DAILIKWILHDWSD 94 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~----~~~i~---~~~~d~~~~~~~~-D~i~~~~~l~~~~~ 94 (184)
.+|+=++=..|.++..++...|. ...|. .+.+.+-. .+++. +...+...++|.. |+|++...= ..
T Consensus 46 ~~~~i~nd~fGal~~~l~~~~~~---~~~ds-~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~d~vl~~~PK---~~ 118 (378)
T PRK15001 46 GPVLILNDAFGALSCALAEHKPY---SIGDS-YISELATRENLRLNGIDESSVKFLDSTADYPQQPGVVLIKVPK---TL 118 (378)
T ss_pred CCEEEEcCchhHHHHHHHhCCCC---eeehH-HHHHHHHHHHHHHcCCCcccceeecccccccCCCCEEEEEeCC---CH
Confidence 48999999999999999965442 22452 22222211 12221 2233334455555 988774321 12
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 95 EHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 95 ~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
......+..+.+.|.||+.++..+..
T Consensus 119 ~~l~~~l~~l~~~l~~~~~ii~g~~~ 144 (378)
T PRK15001 119 ALLEQQLRALRKVVTSDTRIIAGAKA 144 (378)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEEEec
Confidence 34457799999999999998876643
No 343
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=84.86 E-value=2.2 Score=34.93 Aligned_cols=102 Identities=13% Similarity=0.127 Sum_probs=66.4
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CCceEEEcccCc----c----CCC--CCE
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PGVKHVGGDMFQ----S----VPN--GDA 82 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~i~~~~~d~~~----~----~~~--~D~ 82 (184)
+....+|=+|-|.|.+..-+....|..+++++.+ |.|++.|+++ .+......|-.+ . ... .|+
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 3456788888888999888877788889999999 9999999875 222333233222 1 111 177
Q ss_pred EEe------chhhhcCC-hHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 83 ILI------KWILHDWS-DEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 83 i~~------~~~l~~~~-~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
+.. .+.+..-+ .--+..++..++..|+|.|.++|.-...
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r 419 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTR 419 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecC
Confidence 754 11111111 1233478999999999999998855443
No 344
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=84.63 E-value=4.3 Score=33.77 Aligned_cols=92 Identities=13% Similarity=0.173 Sum_probs=56.6
Q ss_pred CCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc--------------c--------
Q 030025 21 HIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ--------------S-------- 76 (184)
Q Consensus 21 ~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~--------------~-------- 76 (184)
+..+++=+|+|. |..+..+++.. ++.++.+|. +..++.+++. ..+++..|..+ +
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 468999999984 45555566654 467888998 6667666654 23333333210 0
Q ss_pred C----CCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 77 V----PNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 77 ~----~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
+ .+.|+|+..-.+---+.+ .-+.++..+.+|||+.++=
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP--~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAP--KLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCC--eeehHHHHhhCCCCCEEEE
Confidence 1 223999665544332222 2367888999999998663
No 345
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=84.22 E-value=15 Score=28.97 Aligned_cols=92 Identities=13% Similarity=0.100 Sum_probs=53.6
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCC-eEEEeec-hhHhhhCCCCCCceEEE---cccCc---cC-CCC-CEEEech
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHI-KGINFDL-PHVIQHSPEYPGVKHVG---GDMFQ---SV-PNG-DAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~-~~~~~D~-~~~~~~a~~~~~i~~~~---~d~~~---~~-~~~-D~i~~~~ 87 (184)
+.+..+||=.|+| .|..+..+++.. .. +++.+|. +.-++.+++..--.++. .|..+ .. +.. |+++-..
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~ 267 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMA 267 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECC
Confidence 6677888888875 455666666655 44 6888887 66666665442111111 11111 01 113 7776422
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
..+ ..+....+.++++|++++...
T Consensus 268 -----G~~---~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 268 -----GSV---PALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred -----CCh---HHHHHHHHHHhcCCEEEEEcc
Confidence 111 357778889999999998654
No 346
>PRK08507 prephenate dehydrogenase; Validated
Probab=84.13 E-value=6.8 Score=29.61 Aligned_cols=84 Identities=18% Similarity=0.143 Sum_probs=45.5
Q ss_pred eEEEecCCc--ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHHHH
Q 030025 24 QLVDVGGSL--GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKL 100 (184)
Q Consensus 24 ~ilDiG~G~--G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~~~ 100 (184)
+|.=||+|. |.++..+.+.....+++++|. +...+.+.+..-+.. ..+.. .....|+|++.- ++.....+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~-~~~~~-~~~~aD~Vilav-----p~~~~~~~ 74 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDE-IVSFE-ELKKCDVIFLAI-----PVDAIIEI 74 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcc-cCCHH-HHhcCCEEEEeC-----cHHHHHHH
Confidence 466677763 345555554433357888887 555555443221111 11211 122258887754 33445577
Q ss_pred HHHHHhhCCCCcEEE
Q 030025 101 LKNCHKSIPEGGKVI 115 (184)
Q Consensus 101 l~~~~~~L~pgG~l~ 115 (184)
++++.. ++||..++
T Consensus 75 ~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 75 LPKLLD-IKENTTII 88 (275)
T ss_pred HHHHhc-cCCCCEEE
Confidence 888888 88776443
No 347
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=83.46 E-value=14 Score=31.74 Aligned_cols=88 Identities=16% Similarity=0.144 Sum_probs=53.2
Q ss_pred CCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCcc--C-----CCCCEEEechhhhcC
Q 030025 22 IKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQS--V-----PNGDAILIKWILHDW 92 (184)
Q Consensus 22 ~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~--~-----~~~D~i~~~~~l~~~ 92 (184)
..+|+=+||| .|......+++. +..++.+|. ++.++.+++ .+...+.+|..++ + ..+|++++..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~d~~~v~~~~~-~g~~v~~GDat~~~~L~~agi~~A~~vvv~~----- 472 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS-GVKMTVLDHDPDHIETLRK-FGMKVFYGDATRMDLLESAGAAKAEVLINAI----- 472 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHh-cCCeEEEEeCCCHHHHHhcCCCcCCEEEEEe-----
Confidence 3678777777 444444444432 568899998 777777765 4678899999872 2 2237766532
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 93 SDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 93 ~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
++++.....-...|.+.|+-+++.
T Consensus 473 ~d~~~n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 473 DDPQTSLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred CCHHHHHHHHHHHHHhCCCCeEEE
Confidence 333323334344555667766655
No 348
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=83.33 E-value=7 Score=31.62 Aligned_cols=100 Identities=12% Similarity=0.123 Sum_probs=58.0
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCCC------CCCceEEEcccCc----cCCCC-CEEEe
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSPE------YPGVKHVGGDMFQ----SVPNG-DAILI 85 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~----~~~~~-D~i~~ 85 (184)
.++.-+|||..+-.|.-+..++..- -...+++.|. ..-+..... ..+......|... .++.. |-|..
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRVLL 318 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRVLL 318 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccceeee
Confidence 5677899999999999888888874 3356777774 333222222 1444444555432 12211 33321
Q ss_pred ----ch---------------h--hhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 86 ----KW---------------I--LHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 86 ----~~---------------~--l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+. + +..+..-+ .++|..+.++++|||+|+-++=
T Consensus 319 DAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQ-r~LllsAi~lv~~GGvLVYSTC 372 (460)
T KOG1122|consen 319 DAPCSGTGVISKDQSVKTNKTVKDILRYAHLQ-RELLLSAIDLVKAGGVLVYSTC 372 (460)
T ss_pred cCCCCCCcccccccccccchhHHHHHHhHHHH-HHHHHHHHhhccCCcEEEEEee
Confidence 11 0 11111112 3688899999999999998653
No 349
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=83.23 E-value=9.2 Score=29.89 Aligned_cols=90 Identities=12% Similarity=0.047 Sum_probs=53.0
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec----hhHhhhCCCCCCceEEEcccCc-c-----CCCC-CEEEec
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL----PHVIQHSPEYPGVKHVGGDMFQ-S-----VPNG-DAILIK 86 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~----~~~~~~a~~~~~i~~~~~d~~~-~-----~~~~-D~i~~~ 86 (184)
..+..+||=+|+| .|.++..+++.. .+++++++. +.-.+.+++. ++.++ +..+ + .... |+|+-.
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~-Ga~~v--~~~~~~~~~~~~~~~~d~vid~ 245 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEEL-GATYV--NSSKTPVAEVKLVGEFDLIIEA 245 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHc-CCEEe--cCCccchhhhhhcCCCCEEEEC
Confidence 3467889999876 466666677765 457888763 3344444433 22332 1111 1 1112 766653
Q ss_pred hhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 87 WILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 87 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
.. .+ ..+....+.|+|||++++....
T Consensus 246 ~g-----~~---~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 246 TG-----VP---PLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred cC-----CH---HHHHHHHHHccCCcEEEEEecC
Confidence 22 12 3578889999999999886643
No 350
>PRK11524 putative methyltransferase; Provisional
Probab=83.23 E-value=3.1 Score=31.76 Aligned_cols=20 Identities=15% Similarity=0.644 Sum_probs=17.7
Q ss_pred HHHHHHHHhhCCCCcEEEEE
Q 030025 98 LKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 98 ~~~l~~~~~~L~pgG~l~i~ 117 (184)
..++++++++|||||.+++.
T Consensus 60 ~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 60 YEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred HHHHHHHHHHhCCCcEEEEE
Confidence 36899999999999999874
No 351
>PLN03139 formate dehydrogenase; Provisional
Probab=83.18 E-value=4.8 Score=32.29 Aligned_cols=88 Identities=17% Similarity=0.168 Sum_probs=48.0
Q ss_pred CCCeEEEecCCcChHHHHHHhhC--CCCeEEEeechh-HhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHH
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKY--PHIKGINFDLPH-VIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHC 97 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~~~-~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~ 97 (184)
..++|.=||. |.++..++++. .+.++++.|... -.+..+ ..++.+. .++.+-++..|+|++...+. ++.
T Consensus 198 ~gktVGIVG~--G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~-~~g~~~~-~~l~ell~~sDvV~l~lPlt----~~T 269 (386)
T PLN03139 198 EGKTVGTVGA--GRIGRLLLQRLKPFNCNLLYHDRLKMDPELEK-ETGAKFE-EDLDAMLPKCDVVVINTPLT----EKT 269 (386)
T ss_pred CCCEEEEEee--cHHHHHHHHHHHHCCCEEEEECCCCcchhhHh-hcCceec-CCHHHHHhhCCEEEEeCCCC----HHH
Confidence 3467777775 55555555442 367888888521 111111 1223221 13333344569998855443 444
Q ss_pred HHHH-HHHHhhCCCCcEEEE
Q 030025 98 LKLL-KNCHKSIPEGGKVIV 116 (184)
Q Consensus 98 ~~~l-~~~~~~L~pgG~l~i 116 (184)
..++ ++....+|||.+|+=
T Consensus 270 ~~li~~~~l~~mk~ga~lIN 289 (386)
T PLN03139 270 RGMFNKERIAKMKKGVLIVN 289 (386)
T ss_pred HHHhCHHHHhhCCCCeEEEE
Confidence 5555 457788899877763
No 352
>PRK06545 prephenate dehydrogenase; Validated
Probab=83.05 E-value=9.8 Score=30.09 Aligned_cols=84 Identities=17% Similarity=0.233 Sum_probs=42.1
Q ss_pred eEEEecCC--cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHHHH
Q 030025 24 QLVDVGGS--LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKL 100 (184)
Q Consensus 24 ~ilDiG~G--~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~~~ 100 (184)
+|.=||+| -|.++..+.+....+.+++.|. ......+....-+.-...|..+...++|+|+..-.. .....+
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~-----~~~~~v 76 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPV-----DATAAL 76 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCH-----HHHHHH
Confidence 46667776 2455555555545566666665 222222221111111111111122334988885543 344578
Q ss_pred HHHHHh-hCCCCc
Q 030025 101 LKNCHK-SIPEGG 112 (184)
Q Consensus 101 l~~~~~-~L~pgG 112 (184)
++++.+ .++|+-
T Consensus 77 l~~l~~~~l~~~~ 89 (359)
T PRK06545 77 LAELADLELKPGV 89 (359)
T ss_pred HHHHhhcCCCCCc
Confidence 888887 488873
No 353
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=82.94 E-value=19 Score=28.23 Aligned_cols=93 Identities=17% Similarity=0.217 Sum_probs=53.8
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEE---EcccCc---cC-C-CC-CEEEech
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHV---GGDMFQ---SV-P-NG-DAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~---~~d~~~---~~-~-~~-D~i~~~~ 87 (184)
+.+..+||=.|+| .|..+..+++.....+++.+|. +.-.+.+++..--.++ ..|..+ .. + .. |+|+-..
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~ 253 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAV 253 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECC
Confidence 6678899999875 4566666677653235888876 5555555543211111 111111 01 1 12 7776422
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
..+ ..++...+.+++||++++...
T Consensus 254 -----g~~---~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 254 -----GRP---ETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred -----CCH---HHHHHHHHHhccCCEEEEECC
Confidence 222 347778889999999998654
No 354
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=82.88 E-value=20 Score=27.67 Aligned_cols=89 Identities=15% Similarity=0.120 Sum_probs=51.8
Q ss_pred CCCeEEEecCCc-ChHHHHHHhhCCCC-eEEEeec-hhHhhhCCCCCCceEEEcc---cCc--cCCCC-CEEEechhhhc
Q 030025 21 HIKQLVDVGGSL-GNTLKAITSKYPHI-KGINFDL-PHVIQHSPEYPGVKHVGGD---MFQ--SVPNG-DAILIKWILHD 91 (184)
Q Consensus 21 ~~~~ilDiG~G~-G~~~~~l~~~~~~~-~~~~~D~-~~~~~~a~~~~~i~~~~~d---~~~--~~~~~-D~i~~~~~l~~ 91 (184)
+..+||-.|||. |..+..+++.. +. ++++++. +...+.+++..--.++..+ ... ..... |+++-....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~-G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~-- 241 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA-GAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGA-- 241 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCC--
Confidence 678888888775 66777777765 44 6777776 5555554443211111111 111 11122 777653221
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 92 WSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 92 ~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
. ..++...+.|+++|+++...
T Consensus 242 ---~---~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 242 ---P---AALASALRVVRPGGTVVQVG 262 (339)
T ss_pred ---H---HHHHHHHHHHhcCCEEEEEe
Confidence 1 34778889999999998754
No 355
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=82.51 E-value=4.2 Score=28.81 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=32.3
Q ss_pred CEEEechhhhcCCh----------HHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 81 DAILIKWILHDWSD----------EHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 81 D~i~~~~~l~~~~~----------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
|+|+++++++-+.. +...+++++++++|+|+-.++......
T Consensus 52 DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~P 102 (183)
T cd01842 52 DLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMP 102 (183)
T ss_pred eEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCC
Confidence 99999999988753 344578888888899998888866544
No 356
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=82.47 E-value=22 Score=28.02 Aligned_cols=104 Identities=12% Similarity=0.078 Sum_probs=58.2
Q ss_pred HHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-CCceEEEcccCccCCC-CCEEEechh
Q 030025 11 KILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-PGVKHVGGDMFQSVPN-GDAILIKWI 88 (184)
Q Consensus 11 ~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-~~i~~~~~d~~~~~~~-~D~i~~~~~ 88 (184)
-++.+.. .=..++||=+|--...+...+.. ..+++..-+........+.. .++.|- .++..+.+. .|.|+....
T Consensus 10 ~~~r~~~-~~~~~~~l~~~~~~d~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~~~~~~~~~~d~~~~~~p 85 (342)
T PRK09489 10 VLLRHSD-DFEQRRVLFAGDLQDDLPAQLDA--ASVRVHTQQFHHWQVLSRQMGDNARFS-LVATAEDVADCDTLIYYWP 85 (342)
T ss_pred HHHhhHH-HhCCCcEEEEcCcchhhHHhhhc--cceEEehhhhHHHHHHHhhcCCceEec-cccCCccCCCCCEEEEECC
Confidence 3334433 33467899999888887776652 23344433333332222211 223222 333323223 388877433
Q ss_pred hhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 89 LHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 89 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
= ...+..-.|..+.+.|+|||.+++.....
T Consensus 86 k---~k~~~~~~l~~~~~~l~~g~~i~~~G~~~ 115 (342)
T PRK09489 86 K---NKQEAQFQLMNLLSLLPVGTDIFVVGENR 115 (342)
T ss_pred C---CHHHHHHHHHHHHHhCCCCCEEEEEEecc
Confidence 2 13456678999999999999999976543
No 357
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=81.91 E-value=2.3 Score=33.02 Aligned_cols=97 Identities=13% Similarity=0.100 Sum_probs=58.5
Q ss_pred HHHhcCCCCCCeEEEec-CCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEc-----ccCccCCCC-C---
Q 030025 13 LEAYKGFEHIKQLVDVG-GSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGG-----DMFQSVPNG-D--- 81 (184)
Q Consensus 13 ~~~~~~~~~~~~ilDiG-~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~-----d~~~~~~~~-D--- 81 (184)
++... +.+.++|-=+| +|.|..+..++++. ..+++++|. +.--+.+-+.-+.+.... |..+..... |
T Consensus 174 Lk~~g-~~pG~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~ 251 (360)
T KOG0023|consen 174 LKRSG-LGPGKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGI 251 (360)
T ss_pred hHHcC-CCCCcEEEEecCcccchHHHHHHHHh-CcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcc
Confidence 34445 67778877777 56999999999997 679999997 423333333322222222 111111111 3
Q ss_pred -EEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 82 -AILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 82 -~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
.+... +- .-+..+.+.||++|++++...-.
T Consensus 252 ~~v~~~-a~---------~~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 252 DTVSNL-AE---------HALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred eeeeec-cc---------cchHHHHHHhhcCCEEEEEeCcC
Confidence 33321 21 23677888999999999976543
No 358
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=81.77 E-value=20 Score=27.00 Aligned_cols=94 Identities=18% Similarity=0.212 Sum_probs=52.7
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEc-ccCc---cC--CCC-CEEEechhh
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGG-DMFQ---SV--PNG-DAILIKWIL 89 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~-d~~~---~~--~~~-D~i~~~~~l 89 (184)
..+..+||=+|+| .|..+..+++.....+++.+|. +.-++.+++..--.++.. +..+ .. +.. |+++-..
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~-- 195 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFS-- 195 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECC--
Confidence 3467789988875 4555566666653234777776 555555554421111110 1001 11 122 7775422
Q ss_pred hcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 90 HDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
..+ ..++.+.+.++|+|++++....
T Consensus 196 ---G~~---~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 196 ---GAT---AAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred ---CCh---HHHHHHHHHhcCCCEEEEeccC
Confidence 122 3588889999999999987643
No 359
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=81.77 E-value=3.7 Score=28.67 Aligned_cols=90 Identities=11% Similarity=0.102 Sum_probs=49.5
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeec--hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHHH
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL--PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLK 99 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~--~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~~ 99 (184)
.++|.=||.|+=..+.++.-+-..++++.-.. +...+.|++. + |...+..+-...+|+|++. +||+...+
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~-G--f~v~~~~eAv~~aDvV~~L-----~PD~~q~~ 75 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKAD-G--FEVMSVAEAVKKADVVMLL-----LPDEVQPE 75 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHT-T---ECCEHHHHHHC-SEEEE------S-HHHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHC-C--CeeccHHHHHhhCCEEEEe-----CChHHHHH
Confidence 57899999986555555544434566654443 4355555432 2 2222333323334888772 35555557
Q ss_pred HH-HHHHhhCCCCcEEEEEee
Q 030025 100 LL-KNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 100 ~l-~~~~~~L~pgG~l~i~~~ 119 (184)
++ +++...|+||-.|++..-
T Consensus 76 vy~~~I~p~l~~G~~L~fahG 96 (165)
T PF07991_consen 76 VYEEEIAPNLKPGATLVFAHG 96 (165)
T ss_dssp HHHHHHHHHS-TT-EEEESSS
T ss_pred HHHHHHHhhCCCCCEEEeCCc
Confidence 77 889999999999998653
No 360
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=80.59 E-value=8.2 Score=30.10 Aligned_cols=92 Identities=13% Similarity=0.156 Sum_probs=57.6
Q ss_pred CCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--CCceEEEcccCc---cCCCCCEEEechhhhcCC
Q 030025 21 HIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--PGVKHVGGDMFQ---SVPNGDAILIKWILHDWS 93 (184)
Q Consensus 21 ~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--~~i~~~~~d~~~---~~~~~D~i~~~~~l~~~~ 93 (184)
.+.+|.=||.| .|..+..++--. +..++.+|. ..-++..... .+++..-..... ....+|++|..-.+---.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgak 245 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAK 245 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc-CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCC
Confidence 34788889998 567777666644 568888887 4444443332 345554444333 344458887644333222
Q ss_pred hHHHHHHHHHHHhhCCCCcEEE
Q 030025 94 DEHCLKLLKNCHKSIPEGGKVI 115 (184)
Q Consensus 94 ~~~~~~~l~~~~~~L~pgG~l~ 115 (184)
.| .-+.++..+.+|||+.++
T Consensus 246 aP--kLvt~e~vk~MkpGsViv 265 (371)
T COG0686 246 AP--KLVTREMVKQMKPGSVIV 265 (371)
T ss_pred Cc--eehhHHHHHhcCCCcEEE
Confidence 33 367899999999999886
No 361
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=80.58 E-value=21 Score=28.96 Aligned_cols=99 Identities=15% Similarity=0.192 Sum_probs=55.3
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEec
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIK 86 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~ 86 (184)
...+.+..+..-..++|+=+|+|. |......++.+ +++++++|. +.-...+.. ....+. +..+....+|+++..
T Consensus 182 ~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~r~~~A~~-~G~~v~--~leeal~~aDVVIta 257 (406)
T TIGR00936 182 IDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPIRALEAAM-DGFRVM--TMEEAAKIGDIFITA 257 (406)
T ss_pred HHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChhhHHHHHh-cCCEeC--CHHHHHhcCCEEEEC
Confidence 344444444124678999999985 44444444443 678888886 433222222 233222 222223344988763
Q ss_pred hhhhcCChHHHHHHHH-HHHhhCCCCcEEEEEee
Q 030025 87 WILHDWSDEHCLKLLK-NCHKSIPEGGKVIVVES 119 (184)
Q Consensus 87 ~~l~~~~~~~~~~~l~-~~~~~L~pgG~l~i~~~ 119 (184)
. +. ..+++ +....+|||++++....
T Consensus 258 T-----G~---~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 258 T-----GN---KDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred C-----CC---HHHHHHHHHhcCCCCcEEEEECC
Confidence 2 12 24565 48889999999887543
No 362
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=80.58 E-value=24 Score=27.09 Aligned_cols=91 Identities=14% Similarity=0.140 Sum_probs=52.6
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCe-EEEeec-hhHhhhCCCCCCceEEEcccCcc-------CCCC-CEEEech
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIK-GINFDL-PHVIQHSPEYPGVKHVGGDMFQS-------VPNG-DAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~-~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~~~~-D~i~~~~ 87 (184)
+.+..+||-+|+| .|..+..+++.. +++ ++.++. ++..+.+++. .+.......... .+.. |+++...
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~-G~~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~ 234 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLN-GASRVTVAEPNEEKLELAKKL-GATETVDPSREDPEAQKEDNPYGFDVVIEAT 234 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHh-CCeEEecCCCCCHHHHHHhcCCCCcEEEECC
Confidence 6778899999865 356666666665 344 666665 5555554333 222111111111 1123 8887532
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
. .. ..+....+.|+++|+++....
T Consensus 235 ~-----~~---~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 235 G-----VP---KTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred C-----Ch---HHHHHHHHHHhcCCEEEEEec
Confidence 1 11 357788899999999987654
No 363
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=80.34 E-value=22 Score=26.49 Aligned_cols=90 Identities=13% Similarity=0.093 Sum_probs=51.9
Q ss_pred CCCCCeEEEecCCc-ChHHHHHHhhCCCCe-EEEeec-hhHhhhCCCCCCceEEEcccC-cc-CCCC-CEEEechhhhcC
Q 030025 19 FEHIKQLVDVGGSL-GNTLKAITSKYPHIK-GINFDL-PHVIQHSPEYPGVKHVGGDMF-QS-VPNG-DAILIKWILHDW 92 (184)
Q Consensus 19 ~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~-~~~~D~-~~~~~~a~~~~~i~~~~~d~~-~~-~~~~-D~i~~~~~l~~~ 92 (184)
+.+..+||-.|+|. |..+..+++.. +++ +++++. ++..+.+++..-.... .+.. .. .... |+++-...-
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~d~vl~~~~~--- 169 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAA-GAREVVGVDPDAARRELAEALGPADPV-AADTADEIGGRGADVVIEASGS--- 169 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEECCCHHHHHHHHHcCCCccc-cccchhhhcCCCCCEEEEccCC---
Confidence 66788888888764 66666667765 345 788876 5555555443200000 0000 01 1122 877653211
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 93 SDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 93 ~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
. ..+....+.|+++|+++...
T Consensus 170 --~---~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 170 --P---SALETALRLLRDRGRVVLVG 190 (277)
T ss_pred --h---HHHHHHHHHhcCCcEEEEEe
Confidence 1 35777888999999998754
No 364
>PRK07574 formate dehydrogenase; Provisional
Probab=80.24 E-value=7.3 Score=31.24 Aligned_cols=87 Identities=15% Similarity=0.074 Sum_probs=47.1
Q ss_pred CCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHHH
Q 030025 22 IKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLK 99 (184)
Q Consensus 22 ~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~~ 99 (184)
.++|.=||.|. |......++.+ +.++++.|. ....+..+ ..++.+ ..+..+-++.+|+|++...+. ++...
T Consensus 192 gktVGIvG~G~IG~~vA~~l~~f-G~~V~~~dr~~~~~~~~~-~~g~~~-~~~l~ell~~aDvV~l~lPlt----~~T~~ 264 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLKPF-DVKLHYTDRHRLPEEVEQ-ELGLTY-HVSFDSLVSVCDVVTIHCPLH----PETEH 264 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEECCCCCchhhHh-hcCcee-cCCHHHHhhcCCEEEEcCCCC----HHHHH
Confidence 45677777663 44333333334 678999986 31111111 112322 122222345569998866554 44556
Q ss_pred HHH-HHHhhCCCCcEEE
Q 030025 100 LLK-NCHKSIPEGGKVI 115 (184)
Q Consensus 100 ~l~-~~~~~L~pgG~l~ 115 (184)
++. +....+|||..|+
T Consensus 265 li~~~~l~~mk~ga~lI 281 (385)
T PRK07574 265 LFDADVLSRMKRGSYLV 281 (385)
T ss_pred HhCHHHHhcCCCCcEEE
Confidence 664 5777789987766
No 365
>PRK09273 hypothetical protein; Provisional
Probab=79.76 E-value=2.1 Score=31.04 Aligned_cols=42 Identities=10% Similarity=-0.016 Sum_probs=20.2
Q ss_pred ecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEE
Q 030025 28 VGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHV 69 (184)
Q Consensus 28 iG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~ 69 (184)
++||||.=..-.+.++|+++.-.+.-+.....++++++...+
T Consensus 69 liCGTGiG~siAANK~pGIraalc~d~~sA~lar~hNnaNVL 110 (211)
T PRK09273 69 TGCGTGQGAMLALNSFPGVVCGYCIDPTDAYLFAQINNGNAL 110 (211)
T ss_pred EEcCcHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHhcCCcEE
Confidence 445555555555555555554444334444444444444333
No 366
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=79.76 E-value=2.5 Score=29.76 Aligned_cols=87 Identities=10% Similarity=0.123 Sum_probs=44.0
Q ss_pred CCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHH
Q 030025 21 HIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCL 98 (184)
Q Consensus 21 ~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~ 98 (184)
..++|.=+|+| .|.....+++.+ +.++++.|. ....... ....+...++.+-++.+|+|+....+.. +..
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~f-G~~V~~~d~~~~~~~~~---~~~~~~~~~l~ell~~aDiv~~~~plt~----~T~ 106 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAF-GMRVIGYDRSPKPEEGA---DEFGVEYVSLDELLAQADIVSLHLPLTP----ETR 106 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHT-T-EEEEEESSCHHHHHH---HHTTEEESSHHHHHHH-SEEEE-SSSST----TTT
T ss_pred CCCEEEEEEEcCCcCeEeeeeecC-CceeEEecccCChhhhc---ccccceeeehhhhcchhhhhhhhhcccc----ccc
Confidence 46889999876 455555555555 679999997 3332201 0111122233333344599888665421 011
Q ss_pred H-HHHHHHhhCCCCcEEE
Q 030025 99 K-LLKNCHKSIPEGGKVI 115 (184)
Q Consensus 99 ~-~l~~~~~~L~pgG~l~ 115 (184)
. +=++....+|||.+|+
T Consensus 107 ~li~~~~l~~mk~ga~lv 124 (178)
T PF02826_consen 107 GLINAEFLAKMKPGAVLV 124 (178)
T ss_dssp TSBSHHHHHTSTTTEEEE
T ss_pred eeeeeeeeeccccceEEE
Confidence 1 1123456778776554
No 367
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=79.59 E-value=5.1 Score=30.89 Aligned_cols=60 Identities=17% Similarity=0.186 Sum_probs=49.3
Q ss_pred CCceEEEcccCccC---CCC--CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 64 PGVKHVGGDMFQSV---PNG--DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 64 ~~i~~~~~d~~~~~---~~~--D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
.++.++++|+.+-+ +.+ |.++...+-.++++.....+++++.+-+.||..+++-......
T Consensus 307 ~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~VifRtaae~s 371 (414)
T COG5379 307 RRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIFRTAAEVS 371 (414)
T ss_pred hheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEEEeccccee
Confidence 57999999998722 222 9999999999999998899999999999999999996654433
No 368
>PRK08655 prephenate dehydrogenase; Provisional
Probab=79.43 E-value=14 Score=30.25 Aligned_cols=85 Identities=16% Similarity=0.208 Sum_probs=42.7
Q ss_pred eEEEecCCcChHHHHHHhhC--CCCeEEEeec-hhHh-hhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHHH
Q 030025 24 QLVDVGGSLGNTLKAITSKY--PHIKGINFDL-PHVI-QHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLK 99 (184)
Q Consensus 24 ~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~-~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~~ 99 (184)
+|.=|| |.|..+..++... .+.++++.|. +... +.+.+. ++.+ ..+..+....+|+|++.-... ....
T Consensus 2 kI~IIG-G~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~-gv~~-~~~~~e~~~~aDvVIlavp~~-----~~~~ 73 (437)
T PRK08655 2 KISIIG-GTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKEL-GVEY-ANDNIDAAKDADIVIISVPIN-----VTED 73 (437)
T ss_pred EEEEEe-cCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHc-CCee-ccCHHHHhccCCEEEEecCHH-----HHHH
Confidence 466676 2333333333321 2346777776 3332 333222 2321 112212233448888755443 3346
Q ss_pred HHHHHHhhCCCCcEEEE
Q 030025 100 LLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 100 ~l~~~~~~L~pgG~l~i 116 (184)
+++++...++||..++-
T Consensus 74 vl~~l~~~l~~~~iViD 90 (437)
T PRK08655 74 VIKEVAPHVKEGSLLMD 90 (437)
T ss_pred HHHHHHhhCCCCCEEEE
Confidence 78888888888875543
No 369
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=79.32 E-value=5.5 Score=31.68 Aligned_cols=100 Identities=18% Similarity=0.220 Sum_probs=66.6
Q ss_pred CeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--------CCceEEEcccCc-c--CCCC----------
Q 030025 23 KQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--------PGVKHVGGDMFQ-S--VPNG---------- 80 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--------~~i~~~~~d~~~-~--~~~~---------- 80 (184)
.+.+|.+|+.+.....+++.++..+--|+++ .+.+..+... .+..+..+|+.. + ..+.
T Consensus 182 v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~ 261 (364)
T KOG1269|consen 182 VRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFGFE 261 (364)
T ss_pred EEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhccch
Confidence 6899999999999999999987777777777 6666655432 345666665543 1 0000
Q ss_pred ------CEEEe----------chhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCC
Q 030025 81 ------DAILI----------KWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPEL 124 (184)
Q Consensus 81 ------D~i~~----------~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 124 (184)
|+-.. ..+.-|+.+. ..++......++|+|.+++.+.....+
T Consensus 262 ~~~~~~dl~~~~s~~w~~~~~~~~~~~~~~~--~~~f~~~~~~~~~~~~v~~~e~~~~~p 319 (364)
T KOG1269|consen 262 HLKLEKDLALKSSFPWNTPLTRDTITHWQDK--SALFRGRVATLKPGGKVLILEYIRGLP 319 (364)
T ss_pred hhhhcccccCCCccccccccchhheeecccc--cHHHHhHhhccCcCceEEehhhcCcCC
Confidence 11100 1233344332 367899999999999999999877554
No 370
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=79.10 E-value=8.6 Score=28.90 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=20.9
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCC
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHI 46 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~ 46 (184)
+.-.|+|+|=|+|.....+.+.++..
T Consensus 58 ~~~~i~E~gfgtglnfl~~~~~~~~~ 83 (252)
T COG4121 58 EILQILEIGFGTGLNFLTAHLAIGDA 83 (252)
T ss_pred cceeehhhhcccchhHHHHHhhhhhh
Confidence 55789999999999998888776443
No 371
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=79.00 E-value=17 Score=28.10 Aligned_cols=92 Identities=17% Similarity=0.209 Sum_probs=51.6
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEE---cccCc----cCC-CC-CEEEech
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVG---GDMFQ----SVP-NG-DAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~---~d~~~----~~~-~~-D~i~~~~ 87 (184)
.++..+||-.|+| .|..+..+++.....+++.++. +...+.+++..--.++. .+..+ ..+ .. |+++-..
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~~ 244 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEAV 244 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEcc
Confidence 5567888887765 4667777777754236677765 44444444332111111 11111 011 23 8776532
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
. .. ..+.+..+.|+++|+++...
T Consensus 245 g-----~~---~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 245 G-----FE---ETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred C-----CH---HHHHHHHHHhhcCCEEEEEc
Confidence 1 11 35788889999999998754
No 372
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=78.21 E-value=3.1 Score=28.34 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=16.7
Q ss_pred CCcChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCc
Q 030025 30 GSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGV 66 (184)
Q Consensus 30 ~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i 66 (184)
||||.=..-.+.++|+++...+.-+...+.++++++.
T Consensus 64 CGtGiG~siaANK~~GIraa~~~d~~~A~~ar~hNna 100 (143)
T TIGR01120 64 CGTGIGMSIAANKFAGIRAALCSEPYMAQMSRLHNDA 100 (143)
T ss_pred cCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHHhcCC
Confidence 4444433334444555554444334444444444433
No 373
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=78.15 E-value=15 Score=23.29 Aligned_cols=80 Identities=13% Similarity=0.191 Sum_probs=47.5
Q ss_pred hhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCc------cccCHHHHHHHH
Q 030025 87 WILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGG------KERTKHEFTTLA 160 (184)
Q Consensus 87 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l 160 (184)
.++-|.+.++..++++.+...- .|.++++= .|.. .....+..+..+ ++.+ .....+++.+.+
T Consensus 3 DvLIHYp~~d~~~~l~~La~~t--~~~~ifTf--AP~T------~~L~~m~~iG~l--FP~~dRsp~i~~~~e~~l~~~l 70 (97)
T PF07109_consen 3 DVLIHYPAEDAAQMLAHLASRT--RGSLIFTF--APRT------PLLALMHAIGKL--FPRPDRSPRIYPHREEDLRRAL 70 (97)
T ss_pred ceEeccCHHHHHHHHHHHHHhc--cCcEEEEE--CCCC------HHHHHHHHHhcc--CCCCCCCCcEEEeCHHHHHHHH
Confidence 4555678888889999998885 55666632 1211 011111111111 1111 224789999999
Q ss_pred HHcCCceeEEEeecCceE
Q 030025 161 TEAGFSGIRFVCFFHNLW 178 (184)
Q Consensus 161 ~~aGf~~i~~~~~~~~~~ 178 (184)
+++||++.+......+++
T Consensus 71 ~~~g~~~~r~~ris~gFY 88 (97)
T PF07109_consen 71 AAAGWRIGRTERISSGFY 88 (97)
T ss_pred HhCCCeeeecccccCcCh
Confidence 999999888877665544
No 374
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=78.14 E-value=9.5 Score=29.91 Aligned_cols=86 Identities=12% Similarity=0.090 Sum_probs=46.8
Q ss_pred CCCeEEEecCCcC--hHHHHHHhhCCCCeEEEeec--hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHH
Q 030025 21 HIKQLVDVGGSLG--NTLKAITSKYPHIKGINFDL--PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEH 96 (184)
Q Consensus 21 ~~~~ilDiG~G~G--~~~~~l~~~~~~~~~~~~D~--~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~ 96 (184)
+.++|.=||+|.= ..+..|.. .+.+++..+. +...+.+++ .++. ..+..+....+|+|++.- ++..
T Consensus 16 ~gktIgIIG~GsmG~AlA~~L~~--sG~~Vvv~~r~~~~s~~~A~~-~G~~--~~s~~eaa~~ADVVvLaV-----Pd~~ 85 (330)
T PRK05479 16 KGKKVAIIGYGSQGHAHALNLRD--SGVDVVVGLREGSKSWKKAEA-DGFE--VLTVAEAAKWADVIMILL-----PDEV 85 (330)
T ss_pred CCCEEEEEeeHHHHHHHHHHHHH--CCCEEEEEECCchhhHHHHHH-CCCe--eCCHHHHHhcCCEEEEcC-----CHHH
Confidence 3577888888853 23333332 2446665543 223333322 2332 223322334459988833 4444
Q ss_pred HHHHH-HHHHhhCCCCcEEEE
Q 030025 97 CLKLL-KNCHKSIPEGGKVIV 116 (184)
Q Consensus 97 ~~~~l-~~~~~~L~pgG~l~i 116 (184)
...++ +++...|+||..|++
T Consensus 86 ~~~V~~~~I~~~Lk~g~iL~~ 106 (330)
T PRK05479 86 QAEVYEEEIEPNLKEGAALAF 106 (330)
T ss_pred HHHHHHHHHHhcCCCCCEEEE
Confidence 45677 778889999988754
No 375
>PTZ00117 malate dehydrogenase; Provisional
Probab=78.04 E-value=25 Score=27.33 Aligned_cols=96 Identities=16% Similarity=0.194 Sum_probs=50.9
Q ss_pred CCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhh-------hCCCC--CCceEEE-cccCccCCCCCEEEechh
Q 030025 21 HIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQ-------HSPEY--PGVKHVG-GDMFQSVPNGDAILIKWI 88 (184)
Q Consensus 21 ~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~-------~a~~~--~~i~~~~-~d~~~~~~~~D~i~~~~~ 88 (184)
+..+|.=||+|+ |+....++....-..++.+|+ ++..+ .+... ....+.. .|.. .+.++|+|++..-
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVitag 82 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITAG 82 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECCC
Confidence 346899999998 766655555543357888887 43211 11111 1233332 3322 4445598887553
Q ss_pred hhcCCh-----------HHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 89 LHDWSD-----------EHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 89 l~~~~~-----------~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
.-.-+. +-..++.+++.+. .|.+++++..
T Consensus 83 ~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivvs 122 (319)
T PTZ00117 83 VQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICVT 122 (319)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 222110 2233555555555 5888766653
No 376
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=77.89 E-value=4.8 Score=34.19 Aligned_cols=100 Identities=19% Similarity=0.326 Sum_probs=60.0
Q ss_pred HHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCC-CeEEEeechhHhhhCCCCCCceEEEcccCcc-----C----CC-
Q 030025 11 KILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPH-IKGINFDLPHVIQHSPEYPGVKHVGGDMFQS-----V----PN- 79 (184)
Q Consensus 11 ~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~-~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~-----~----~~- 79 (184)
.|-..|.=+.+...|||+||..|.++.-.++..|. .-++|+|+-.+ +-.+++...+.|+... . ..
T Consensus 34 Qln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi----kp~~~c~t~v~dIttd~cr~~l~k~l~t~ 109 (780)
T KOG1098|consen 34 QLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI----KPIPNCDTLVEDITTDECRSKLRKILKTW 109 (780)
T ss_pred HHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec----ccCCccchhhhhhhHHHHHHHHHHHHHhC
Confidence 34445553557788999999999999988888654 56899997222 1125666666666541 1 11
Q ss_pred -CCEEEech---hhhcCChH------HHHHHHHHHHhhCCCCcEE
Q 030025 80 -GDAILIKW---ILHDWSDE------HCLKLLKNCHKSIPEGGKV 114 (184)
Q Consensus 80 -~D~i~~~~---~l~~~~~~------~~~~~l~~~~~~L~pgG~l 114 (184)
+|+|+.-. |-..|..+ -....++-+...|.-||.+
T Consensus 110 ~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~f 154 (780)
T KOG1098|consen 110 KADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTF 154 (780)
T ss_pred CCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcc
Confidence 26665422 11112111 1124466677788999993
No 377
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=77.89 E-value=13 Score=29.25 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=31.7
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCcC----hHHHHHHhhCCCCeEEEeec
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSLG----NTLKAITSKYPHIKGINFDL 53 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~G----~~~~~l~~~~~~~~~~~~D~ 53 (184)
+..+|...+ ...-.++-.|.||| ..++.+.++.|+++++++|.
T Consensus 201 tg~EI~~q~---~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp 247 (362)
T KOG1252|consen 201 TGPEIWRQL---DGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDP 247 (362)
T ss_pred ccHHHHHHh---cCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCC
Confidence 344555554 34456777788887 46788889999999999997
No 378
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=77.58 E-value=15 Score=28.66 Aligned_cols=97 Identities=10% Similarity=0.131 Sum_probs=60.2
Q ss_pred HhcCCCCCCeEEEec--CCcChHHHHHHhhCCCCeEEEeechhHhhhCCCCC---CceEEEcccCcc---C-C-CC-CEE
Q 030025 15 AYKGFEHIKQLVDVG--GSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYP---GVKHVGGDMFQS---V-P-NG-DAI 83 (184)
Q Consensus 15 ~~~~~~~~~~ilDiG--~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~---~i~~~~~d~~~~---~-~-~~-D~i 83 (184)
... +++..+||=.| +|.|.++..|++..-...+.....++-.+.+++.. -+.+...|+.+. . + .. |+|
T Consensus 137 ~~~-l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv 215 (326)
T COG0604 137 RAG-LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVV 215 (326)
T ss_pred hcC-CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEE
Confidence 344 78889999998 55779999999987543344443344444555542 133334444331 1 1 23 887
Q ss_pred EechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 84 LIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 84 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
+-.-- ...+.+..+.|+++|+++......
T Consensus 216 ~D~vG---------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 216 LDTVG---------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred EECCC---------HHHHHHHHHHhccCCEEEEEecCC
Confidence 76222 145788899999999999866544
No 379
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=77.04 E-value=3.5 Score=28.16 Aligned_cols=35 Identities=9% Similarity=-0.018 Sum_probs=14.4
Q ss_pred CCcChHHHHHHhhCCCCeEEEeechhHhhhCCCCC
Q 030025 30 GSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYP 64 (184)
Q Consensus 30 ~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~ 64 (184)
||||.=..-.+.++|+++.-.+.-+...+.+++++
T Consensus 63 CGtGiG~siaANK~~GIraa~~~d~~~A~~ar~hN 97 (144)
T TIGR00689 63 CGTGIGMSIAANKFKGIRAALCVDEYTAALARQHN 97 (144)
T ss_pred cCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHHhc
Confidence 44443333344444444444333233444444433
No 380
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=77.02 E-value=10 Score=33.05 Aligned_cols=149 Identities=11% Similarity=0.034 Sum_probs=78.3
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----------------------CCceEEEcccCccC
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----------------------PGVKHVGGDMFQSV 77 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----------------------~~i~~~~~d~~~~~ 77 (184)
..+|.=||+|+=.......-...+..++..|. ++.++.+.++ .++++. .|+ +.+
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~~ 390 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDY-AGF 390 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH-HHh
Confidence 36899999997333333333333678888887 6666554321 223322 222 223
Q ss_pred CCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhh-----------hhCC
Q 030025 78 PNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVM-----------TQYP 146 (184)
Q Consensus 78 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~ 146 (184)
.++|+|+= .+.+.+. -+.++|+++-+.++|+..|.-.+...+-..-......-.....++++ ....
T Consensus 391 ~~aDlViE-av~E~l~--~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~ 467 (715)
T PRK11730 391 ERVDVVVE-AVVENPK--VKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGE 467 (715)
T ss_pred cCCCEEEe-cccCcHH--HHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCC
Confidence 34477764 3555443 34589999999999997766544333211000000000001111110 0011
Q ss_pred CccccCHHHHHHHHHHcCCceeEEEeecC
Q 030025 147 GGKERTKHEFTTLATEAGFSGIRFVCFFH 175 (184)
Q Consensus 147 ~~~~~~~~~~~~~l~~aGf~~i~~~~~~~ 175 (184)
.....+.+...++++..|...+.+...++
T Consensus 468 ~T~~~~~~~~~~~~~~lgk~pv~v~d~pG 496 (715)
T PRK11730 468 KTSDETIATVVAYASKMGKTPIVVNDCPG 496 (715)
T ss_pred CCCHHHHHHHHHHHHHhCCceEEecCcCc
Confidence 12233667888889999999988765543
No 381
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=76.87 E-value=4.4 Score=29.51 Aligned_cols=81 Identities=15% Similarity=0.197 Sum_probs=45.8
Q ss_pred CcChHHHHHHhhC--CCCeEEEe-ec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHHHHHHHHHh
Q 030025 31 SLGNTLKAITSKY--PHIKGINF-DL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKNCHK 106 (184)
Q Consensus 31 G~G~~~~~l~~~~--~~~~~~~~-D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~ 106 (184)
|+|.....++.++ .+.+++.- .- +..++.+.+.-..........+-...+|+|+..-.+++++ .++++++.
T Consensus 8 GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~-----~v~~~l~~ 82 (211)
T COG2085 8 GTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIP-----DVLAELRD 82 (211)
T ss_pred ccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHH-----hHHHHHHH
Confidence 5666666666553 12233333 22 5555555444233333333332233349999987777654 57888888
Q ss_pred hCCCCcEEEEEe
Q 030025 107 SIPEGGKVIVVE 118 (184)
Q Consensus 107 ~L~pgG~l~i~~ 118 (184)
.+. |+++|.-
T Consensus 83 ~~~--~KIvID~ 92 (211)
T COG2085 83 ALG--GKIVIDA 92 (211)
T ss_pred HhC--CeEEEec
Confidence 886 7877743
No 382
>PRK08818 prephenate dehydrogenase; Provisional
Probab=76.85 E-value=14 Score=29.51 Aligned_cols=75 Identities=12% Similarity=0.055 Sum_probs=44.3
Q ss_pred CCeEEEecC-C--cChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHH
Q 030025 22 IKQLVDVGG-S--LGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCL 98 (184)
Q Consensus 22 ~~~ilDiG~-G--~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~ 98 (184)
..+|.=||. | -|++++.+.+.+ ..+++++|.. . . ...+..+...++|+|+.+-.+. ...
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~------d---~---~~~~~~~~v~~aDlVilavPv~-----~~~ 65 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPA------D---P---GSLDPATLLQRADVLIFSAPIR-----HTA 65 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCC------c---c---ccCCHHHHhcCCCEEEEeCCHH-----HHH
Confidence 467888887 6 345555555443 6789999851 0 0 0001111234459998866554 445
Q ss_pred HHHHHHHhh---CCCCcEE
Q 030025 99 KLLKNCHKS---IPEGGKV 114 (184)
Q Consensus 99 ~~l~~~~~~---L~pgG~l 114 (184)
++++++... |+||..+
T Consensus 66 ~~l~~l~~~~~~l~~~~iV 84 (370)
T PRK08818 66 ALIEEYVALAGGRAAGQLW 84 (370)
T ss_pred HHHHHHhhhhcCCCCCeEE
Confidence 788888876 6787443
No 383
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=76.84 E-value=4.1 Score=30.22 Aligned_cols=79 Identities=14% Similarity=0.265 Sum_probs=44.5
Q ss_pred HHHHHHhcCCCCC--CeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHh-------hhCCCC--------CCceEEEc
Q 030025 10 QKILEAYKGFEHI--KQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVI-------QHSPEY--------PGVKHVGG 71 (184)
Q Consensus 10 ~~l~~~~~~~~~~--~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~-------~~a~~~--------~~i~~~~~ 71 (184)
+.|+++.. +++. .+|||.=+|.|.=+.-++.. ++++++++- |.+. +++.+. .+++++.+
T Consensus 63 ~~l~kA~G-lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 63 DPLAKAVG-LKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp SHHHHHTT--BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred cHHHHHhC-CCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 45666766 5654 49999999999888877765 578999985 3222 122111 36899999
Q ss_pred ccCcc--CCC-C-CEEEechhhhc
Q 030025 72 DMFQS--VPN-G-DAILIKWILHD 91 (184)
Q Consensus 72 d~~~~--~~~-~-D~i~~~~~l~~ 91 (184)
|..+. .+. . |+|++-=++.+
T Consensus 140 d~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 140 DALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp -CCCHCCCHSS--SEEEE--S---
T ss_pred CHHHHHhhcCCCCCEEEECCCCCC
Confidence 99873 222 3 99998665554
No 384
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=76.42 E-value=32 Score=26.32 Aligned_cols=91 Identities=13% Similarity=0.197 Sum_probs=53.5
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc----cCCCC-CEEEechhhhc
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ----SVPNG-DAILIKWILHD 91 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~----~~~~~-D~i~~~~~l~~ 91 (184)
..+..+||-.|+| .|..+..+++.. +.+++.++. +...+.+++.. ......+... ..... |+++....
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~d~vi~~~~--- 234 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARKLG-ADEVVDSGAELDEQAAAGGADVILVTVV--- 234 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhC-CcEEeccCCcchHHhccCCCCEEEECCC---
Confidence 6777899999887 677777777765 457777765 55555443321 2111111100 11123 77765321
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 92 WSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 92 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
.. ..+..+.+.|+++|.++....
T Consensus 235 --~~---~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 235 --SG---AAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred --cH---HHHHHHHHhcccCCEEEEECC
Confidence 11 357788899999999988653
No 385
>PLN02740 Alcohol dehydrogenase-like
Probab=76.30 E-value=29 Score=27.47 Aligned_cols=93 Identities=14% Similarity=0.169 Sum_probs=54.2
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcc-----cCc---cC-CCC-CEEEec
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGD-----MFQ---SV-PNG-DAILIK 86 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d-----~~~---~~-~~~-D~i~~~ 86 (184)
+.+..+||=+|+| .|..+..+++.....+++++|. +.-++.+++..--.++..+ ..+ .. +.. |+++-.
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~ 275 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFEC 275 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEEC
Confidence 6778899999876 4555566666653236888887 6666666554211122111 111 11 113 777552
Q ss_pred hhhhcCChHHHHHHHHHHHhhCCCC-cEEEEEee
Q 030025 87 WILHDWSDEHCLKLLKNCHKSIPEG-GKVIVVES 119 (184)
Q Consensus 87 ~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 119 (184)
. ..+ ..++...+.+++| |++++...
T Consensus 276 ~-----G~~---~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 276 A-----GNV---EVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred C-----CCh---HHHHHHHHhhhcCCCEEEEEcc
Confidence 2 222 3577888889897 99887654
No 386
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=76.16 E-value=17 Score=27.64 Aligned_cols=87 Identities=13% Similarity=0.137 Sum_probs=46.3
Q ss_pred CeEEEecCC--cChHHHHHHhhC--CCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHH
Q 030025 23 KQLVDVGGS--LGNTLKAITSKY--PHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHC 97 (184)
Q Consensus 23 ~~ilDiG~G--~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~ 97 (184)
.+|.=|||| .+.+...+.+.. +..++++.|. +.-++.+.+.-++.. ..|..+...++|+|++.-- +...
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~-~~~~~e~~~~aDiIiLavk-----P~~~ 76 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITI-TTNNNEVANSADILILSIK-----PDLY 76 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEE-eCCcHHHHhhCCEEEEEeC-----hHHH
Confidence 357778877 334444444432 2346888886 444443332123332 2222222334498877433 3445
Q ss_pred HHHHHHHHhhCCCCcEEEE
Q 030025 98 LKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 98 ~~~l~~~~~~L~pgG~l~i 116 (184)
..+++++...++++ .+++
T Consensus 77 ~~vl~~l~~~~~~~-~lvI 94 (272)
T PRK12491 77 SSVINQIKDQIKND-VIVV 94 (272)
T ss_pred HHHHHHHHHhhcCC-cEEE
Confidence 57888888888766 4444
No 387
>PTZ00357 methyltransferase; Provisional
Probab=76.13 E-value=4.9 Score=34.77 Aligned_cols=90 Identities=13% Similarity=0.163 Sum_probs=57.2
Q ss_pred CeEEEecCCcChHHHHHHhhC----CCCeEEEeec-hhH--hhhCC--C---C--------CCceEEEcccCc-cCC---
Q 030025 23 KQLVDVGGSLGNTLKAITSKY----PHIKGINFDL-PHV--IQHSP--E---Y--------PGVKHVGGDMFQ-SVP--- 78 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~----~~~~~~~~D~-~~~--~~~a~--~---~--------~~i~~~~~d~~~-~~~--- 78 (184)
-.|+-+|+|-|-+....++.. -.+++.+++. +.. +...+ + . ..|+++..|+.. ..+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 358999999998887777654 2467888886 442 11111 1 1 238999999987 222
Q ss_pred ----------CCCEEEechhhhcCChHH-HHHHHHHHHhhCCC----CcE
Q 030025 79 ----------NGDAILIKWILHDWSDEH-CLKLLKNCHKSIPE----GGK 113 (184)
Q Consensus 79 ----------~~D~i~~~~~l~~~~~~~-~~~~l~~~~~~L~p----gG~ 113 (184)
..|+||+. .|.-|+|-| .-+.|..+.+.||+ +|.
T Consensus 782 ~s~~~P~~~gKaDIVVSE-LLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSE-LLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHh-hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 23888773 333343222 22678888888887 775
No 388
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=76.08 E-value=13 Score=29.16 Aligned_cols=88 Identities=10% Similarity=0.090 Sum_probs=49.4
Q ss_pred CCCeEEEecCCcChHHHHHHhh--CCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHH
Q 030025 21 HIKQLVDVGGSLGNTLKAITSK--YPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHC 97 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~--~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~ 97 (184)
..++|.=||.| .....++++ --+.++++.+. +...+.+.. .++.. .+..+-...+|+|++... +++.
T Consensus 15 kgKtVGIIG~G--sIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~-~G~~v--~sl~Eaak~ADVV~llLP-----d~~t 84 (335)
T PRK13403 15 QGKTVAVIGYG--SQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKA-DGFEV--MSVSEAVRTAQVVQMLLP-----DEQQ 84 (335)
T ss_pred CcCEEEEEeEc--HHHHHHHHHHHHCcCEEEEEECcchhhHHHHH-cCCEE--CCHHHHHhcCCEEEEeCC-----ChHH
Confidence 36788888776 333333333 13567777764 222222221 23332 233333445599988444 3334
Q ss_pred HHHH-HHHHhhCCCCcEEEEEe
Q 030025 98 LKLL-KNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 98 ~~~l-~~~~~~L~pgG~l~i~~ 118 (184)
..++ +++...|+||..|+++.
T Consensus 85 ~~V~~~eil~~MK~GaiL~f~h 106 (335)
T PRK13403 85 AHVYKAEVEENLREGQMLLFSH 106 (335)
T ss_pred HHHHHHHHHhcCCCCCEEEECC
Confidence 4666 57999999999998854
No 389
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=75.98 E-value=12 Score=28.99 Aligned_cols=84 Identities=11% Similarity=0.222 Sum_probs=46.6
Q ss_pred CCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEE-E-cccCccCCCCCEEEechhhhcCChHH
Q 030025 21 HIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHV-G-GDMFQSVPNGDAILIKWILHDWSDEH 96 (184)
Q Consensus 21 ~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~-~-~d~~~~~~~~D~i~~~~~l~~~~~~~ 96 (184)
..++|.=||.| .|.-....++.+ +.++++.|. +.. .+.+... . .+..+-++++|+|++...+- ++
T Consensus 135 ~g~tvgIvG~G~IG~~vA~~l~af-G~~V~~~~~~~~~------~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt----~~ 203 (312)
T PRK15469 135 EDFTIGILGAGVLGSKVAQSLQTW-GFPLRCWSRSRKS------WPGVQSFAGREELSAFLSQTRVLINLLPNT----PE 203 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCCCC------CCCceeecccccHHHHHhcCCEEEECCCCC----HH
Confidence 34688888777 354444444444 578888885 211 1122111 1 11112344569998855443 34
Q ss_pred HHHHHH-HHHhhCCCCcEEE
Q 030025 97 CLKLLK-NCHKSIPEGGKVI 115 (184)
Q Consensus 97 ~~~~l~-~~~~~L~pgG~l~ 115 (184)
...++. +....+|||..|+
T Consensus 204 T~~li~~~~l~~mk~ga~lI 223 (312)
T PRK15469 204 TVGIINQQLLEQLPDGAYLL 223 (312)
T ss_pred HHHHhHHHHHhcCCCCcEEE
Confidence 445554 5788899988765
No 390
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=75.96 E-value=4.1 Score=27.97 Aligned_cols=42 Identities=14% Similarity=0.122 Sum_probs=22.6
Q ss_pred ecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEE
Q 030025 28 VGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHV 69 (184)
Q Consensus 28 iG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~ 69 (184)
+.||||.=..-.+.++|+++.-.+--+....+++++++...+
T Consensus 64 liCGTGiG~~iaANKv~GiraAl~~D~~sA~~ar~hNnaNvl 105 (151)
T COG0698 64 LICGTGIGMSIAANKVPGIRAALVSDPTSAKLAREHNNANVL 105 (151)
T ss_pred EEecCChhHHHHhhccCCeEEEEecCHHHHHHHHhcCCCcEE
Confidence 346666555555666666655444334555555555554444
No 391
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=75.91 E-value=28 Score=27.52 Aligned_cols=100 Identities=13% Similarity=0.226 Sum_probs=66.6
Q ss_pred HHHHhcCCCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEc----ccCc---cCCC-C-
Q 030025 12 ILEAYKGFEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGG----DMFQ---SVPN-G- 80 (184)
Q Consensus 12 l~~~~~~~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~----d~~~---~~~~-~- 80 (184)
..+... .++..+|.-+||| .|..+..-++.....+++++|+ +.-++.|++..-.+++.. |+.+ .... +
T Consensus 177 v~nta~-v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~ 255 (366)
T COG1062 177 VVNTAK-VEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGA 255 (366)
T ss_pred hhhccc-CCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCC
Confidence 344445 7788899999987 5666666666677789999999 999999988743333322 2222 1122 2
Q ss_pred CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 81 DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 81 D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
|..+- ..... +.++.....+.++|..++.-..
T Consensus 256 d~~~e-----~~G~~---~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 256 DYAFE-----CVGNV---EVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred CEEEE-----ccCCH---HHHHHHHHHHhcCCeEEEEecC
Confidence 55522 22222 4688888888889999986543
No 392
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=75.85 E-value=4.8 Score=32.16 Aligned_cols=95 Identities=13% Similarity=0.107 Sum_probs=64.8
Q ss_pred CCCeEEEecCCcChHHHHHHhhCC-CCeEEEeec-hhHhhhCCCC-------C-CceEEEcccCcc---CCCC-CEEEec
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYP-HIKGINFDL-PHVIQHSPEY-------P-GVKHVGGDMFQS---VPNG-DAILIK 86 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-------~-~i~~~~~d~~~~---~~~~-D~i~~~ 86 (184)
+.-+|||.=+|+|--+.+.+...+ ..+++.-|+ +.+.+..+++ + .+++...|+..- .... |+|=+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl- 127 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL- 127 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe-
Confidence 456899999999999999998843 467889999 8877776654 3 467777787662 2333 88755
Q ss_pred hhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 87 WILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 87 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
.-++.+ ..+++.+.+.++.||.|.++-...
T Consensus 128 ---DPfGSp--~pfldsA~~~v~~gGll~vTaTD~ 157 (377)
T PF02005_consen 128 ---DPFGSP--APFLDSALQAVKDGGLLCVTATDT 157 (377)
T ss_dssp -----SS----HHHHHHHHHHEEEEEEEEEEE--H
T ss_pred ---CCCCCc--cHhHHHHHHHhhcCCEEEEecccc
Confidence 223333 368999999999999999976543
No 393
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=75.75 E-value=4 Score=27.98 Aligned_cols=35 Identities=11% Similarity=-0.018 Sum_probs=14.2
Q ss_pred CCcChHHHHHHhhCCCCeEEEeechhHhhhCCCCC
Q 030025 30 GSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYP 64 (184)
Q Consensus 30 ~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~ 64 (184)
||||.=..-.+.++|+++...+.-+...+.+|+++
T Consensus 66 CGtGiG~siaANK~~GIRAA~~~d~~~A~~ar~hN 100 (148)
T PRK05571 66 CGTGIGMSIAANKVKGIRAALCHDTYSAHLAREHN 100 (148)
T ss_pred cCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHHhc
Confidence 44443333344444444444433334444444433
No 394
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=75.52 E-value=22 Score=27.32 Aligned_cols=85 Identities=16% Similarity=0.079 Sum_probs=48.2
Q ss_pred CCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcc-cCccCCCCCEEEechhhhcCChHHH
Q 030025 21 HIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGD-MFQSVPNGDAILIKWILHDWSDEHC 97 (184)
Q Consensus 21 ~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d-~~~~~~~~D~i~~~~~l~~~~~~~~ 97 (184)
..++++=+|.| .|......++.. +++++.+|. +...+.++.. +.++...+ ..+.....|+|+..-.. .
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~~~~~~~~~~-G~~~~~~~~l~~~l~~aDiVI~t~p~-----~-- 221 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL-GANVTVGARKSAHLARITEM-GLSPFHLSELAEEVGKIDIIFNTIPA-----L-- 221 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHc-CCeeecHHHHHHHhCCCCEEEECCCh-----h--
Confidence 57899999987 344444444444 568899987 5544444432 33333221 11123445999874321 1
Q ss_pred HHHHHHHHhhCCCCcEEE
Q 030025 98 LKLLKNCHKSIPEGGKVI 115 (184)
Q Consensus 98 ~~~l~~~~~~L~pgG~l~ 115 (184)
.+-++..+.++||+.++
T Consensus 222 -~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 222 -VLTKEVLSKMPPEALII 238 (296)
T ss_pred -hhhHHHHHcCCCCcEEE
Confidence 23455667789987655
No 395
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=75.34 E-value=8.3 Score=32.45 Aligned_cols=86 Identities=12% Similarity=0.130 Sum_probs=50.8
Q ss_pred CeEEEecCCcChHHHHHHhhC--CCCeEEEeec-hhHhhhCCCCCCceEEEcccCcc--C-----CCCCEEEechhhhcC
Q 030025 23 KQLVDVGGSLGNTLKAITSKY--PHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQS--V-----PNGDAILIKWILHDW 92 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~--~-----~~~D~i~~~~~l~~~ 92 (184)
.+++=+ |.|..++.+++.. .+..++.+|. ++..+.+++ .+...+.+|..++ + .++|.+++...
T Consensus 418 ~hiiI~--G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~-~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~---- 490 (558)
T PRK10669 418 NHALLV--GYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE-RGIRAVLGNAANEEIMQLAHLDCARWLLLTIP---- 490 (558)
T ss_pred CCEEEE--CCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-CCCeEEEcCCCCHHHHHhcCccccCEEEEEcC----
Confidence 455555 4555555555543 2468899998 777777764 5789999999872 2 23375554211
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 93 SDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 93 ~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
.+++...+... .+...|+.+++.
T Consensus 491 ~~~~~~~iv~~-~~~~~~~~~iia 513 (558)
T PRK10669 491 NGYEAGEIVAS-AREKRPDIEIIA 513 (558)
T ss_pred ChHHHHHHHHH-HHHHCCCCeEEE
Confidence 22232234444 455577777665
No 396
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=75.12 E-value=27 Score=27.16 Aligned_cols=95 Identities=6% Similarity=0.036 Sum_probs=51.4
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEc---ccC---ccCC-CC-CEEEechh
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGG---DMF---QSVP-NG-DAILIKWI 88 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~---d~~---~~~~-~~-D~i~~~~~ 88 (184)
..+..+||=.|+| .|..+..+++......++.++. ++-.+.+++..--.++.. +.. +..+ .. |.+++..+
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~ 237 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETA 237 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECC
Confidence 5677899999875 4555566666653323677775 555555544321111111 100 0111 12 53332222
Q ss_pred hhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 89 LHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 89 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
..+ ..+....+.|+|||++++....
T Consensus 238 ----G~~---~~~~~~~~~l~~~G~iv~~G~~ 262 (347)
T PRK10309 238 ----GVP---QTVELAIEIAGPRAQLALVGTL 262 (347)
T ss_pred ----CCH---HHHHHHHHHhhcCCEEEEEccC
Confidence 222 3578888999999999987643
No 397
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=75.04 E-value=3.2 Score=25.97 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=17.8
Q ss_pred EEecCCcChHHHHHHhhC-CCCeEEEeec
Q 030025 26 VDVGGSLGNTLKAITSKY-PHIKGINFDL 53 (184)
Q Consensus 26 lDiG~G~G~~~~~l~~~~-~~~~~~~~D~ 53 (184)
+|||||.|....+....+ +...+..+..
T Consensus 7 IDIGcG~GNTmda~fRsct~htSyYy~S~ 35 (124)
T PF07101_consen 7 IDIGCGAGNTMDAAFRSCTLHTSYYYLST 35 (124)
T ss_pred cccccCCCcchhhhhhccccccceEEEee
Confidence 699999998876555443 3334444443
No 398
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=74.77 E-value=2.3 Score=26.34 Aligned_cols=79 Identities=16% Similarity=0.168 Sum_probs=39.7
Q ss_pred CcChHHHHHHhhC-----CCCeEEEe-ec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHHHHHHH
Q 030025 31 SLGNTLKAITSKY-----PHIKGINF-DL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLLKN 103 (184)
Q Consensus 31 G~G~~~~~l~~~~-----~~~~~~~~-D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~~~l~~ 103 (184)
|+|..+..+++.. +..++..+ +. ++-.+...+.-.+.+...+..+-...+|+|+..---+ ....++++
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~-----~~~~v~~~ 80 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQ-----QLPEVLSE 80 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GG-----GHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHH-----HHHHHHHH
Confidence 5555555555442 22466634 65 5554444333334444434433333459998855444 33467888
Q ss_pred HHhhCCCCcEEE
Q 030025 104 CHKSIPEGGKVI 115 (184)
Q Consensus 104 ~~~~L~pgG~l~ 115 (184)
+ ..+.++..++
T Consensus 81 i-~~~~~~~~vi 91 (96)
T PF03807_consen 81 I-PHLLKGKLVI 91 (96)
T ss_dssp H-HHHHTTSEEE
T ss_pred H-hhccCCCEEE
Confidence 8 5555555444
No 399
>PRK13243 glyoxylate reductase; Reviewed
Probab=74.66 E-value=11 Score=29.56 Aligned_cols=87 Identities=8% Similarity=0.069 Sum_probs=47.6
Q ss_pred CCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHH
Q 030025 21 HIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCL 98 (184)
Q Consensus 21 ~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~ 98 (184)
..++|.=||.|. |......++.+ +.++++.|. +.... .. ..++.+ .+..+-++.+|+|++...+. ++..
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~-G~~V~~~d~~~~~~~-~~-~~~~~~--~~l~ell~~aDiV~l~lP~t----~~T~ 219 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGF-GMRILYYSRTRKPEA-EK-ELGAEY--RPLEELLRESDFVSLHVPLT----KETY 219 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-CCEEEEECCCCChhh-HH-HcCCEe--cCHHHHHhhCCEEEEeCCCC----hHHh
Confidence 357888888864 54433444444 568899986 32111 11 112221 22222344559998855432 3334
Q ss_pred HHH-HHHHhhCCCCcEEEE
Q 030025 99 KLL-KNCHKSIPEGGKVIV 116 (184)
Q Consensus 99 ~~l-~~~~~~L~pgG~l~i 116 (184)
.++ ++....+|||..|+=
T Consensus 220 ~~i~~~~~~~mk~ga~lIN 238 (333)
T PRK13243 220 HMINEERLKLMKPTAILVN 238 (333)
T ss_pred hccCHHHHhcCCCCeEEEE
Confidence 444 567788899887763
No 400
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=74.53 E-value=6.8 Score=26.02 Aligned_cols=28 Identities=21% Similarity=0.145 Sum_probs=24.3
Q ss_pred ccccCHHHHHHHHHHcCCceeEEEeecC
Q 030025 148 GKERTKHEFTTLATEAGFSGIRFVCFFH 175 (184)
Q Consensus 148 ~~~~~~~~~~~~l~~aGf~~i~~~~~~~ 175 (184)
+..|+.+++..+++++||++++.+....
T Consensus 93 S~Ky~~~~~~~l~~~aGl~~~~~w~d~~ 120 (127)
T PF10017_consen 93 SYKYSPEEFEALAEQAGLEVEKRWTDPK 120 (127)
T ss_pred eeCcCHHHHHHHHHHCCCeeEEEEECCC
Confidence 4567999999999999999999887654
No 401
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=74.39 E-value=6.4 Score=31.50 Aligned_cols=45 Identities=18% Similarity=0.104 Sum_probs=31.0
Q ss_pred HHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhh
Q 030025 12 ILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQH 59 (184)
Q Consensus 12 l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~ 59 (184)
-.+.+. +.++.+||=|.+|-.... .++...| .++++||+ |.....
T Consensus 27 D~~aL~-i~~~d~vl~ItSaG~N~L-~yL~~~P-~~I~aVDlNp~Q~aL 72 (380)
T PF11899_consen 27 DMEALN-IGPDDRVLTITSAGCNAL-DYLLAGP-KRIHAVDLNPAQNAL 72 (380)
T ss_pred HHHHhC-CCCCCeEEEEccCCchHH-HHHhcCC-ceEEEEeCCHHHHHH
Confidence 345666 889999999965555444 4555555 59999998 654443
No 402
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=74.30 E-value=29 Score=28.34 Aligned_cols=87 Identities=13% Similarity=0.132 Sum_probs=49.4
Q ss_pred CCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHH
Q 030025 21 HIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCL 98 (184)
Q Consensus 21 ~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~ 98 (184)
..++|+=+|+|. |......++.. +.+++.+|. +.....+.. .++.. .++.+....+|+|+... +..
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp~ra~~A~~-~G~~v--~~l~eal~~aDVVI~aT-----G~~--- 278 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDPICALQAAM-DGFRV--MTMEEAAELGDIFVTAT-----GNK--- 278 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCchhhHHHHh-cCCEe--cCHHHHHhCCCEEEECC-----CCH---
Confidence 678999999884 33333333333 568888887 433322222 12332 12222233459887742 222
Q ss_pred HHHH-HHHhhCCCCcEEEEEee
Q 030025 99 KLLK-NCHKSIPEGGKVIVVES 119 (184)
Q Consensus 99 ~~l~-~~~~~L~pgG~l~i~~~ 119 (184)
.+++ .....+|+|++++....
T Consensus 279 ~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 279 DVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred HHHHHHHHhcCCCCCEEEEcCC
Confidence 3565 68889999998877543
No 403
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=74.16 E-value=32 Score=26.69 Aligned_cols=93 Identities=19% Similarity=0.236 Sum_probs=53.9
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEE---cccCc---c-CC-CC-CEEEech
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVG---GDMFQ---S-VP-NG-DAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~---~d~~~---~-~~-~~-D~i~~~~ 87 (184)
.++..+||-.|+| .|..+..+++......++.+|. +.-.+.+++..--..+. .+..+ . .+ .. |+++-..
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~ 243 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIAG 243 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEECC
Confidence 6677888888866 4556666666653335888887 55555555442111111 11111 1 11 22 7776421
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
..+ ..+..+.+.|+++|+++....
T Consensus 244 -----g~~---~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 244 -----GGQ---DTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred -----CCH---HHHHHHHHHhhcCCEEEEecc
Confidence 112 357888999999999987553
No 404
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=74.00 E-value=3 Score=28.35 Aligned_cols=42 Identities=14% Similarity=0.102 Sum_probs=21.3
Q ss_pred ecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEE
Q 030025 28 VGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHV 69 (184)
Q Consensus 28 iG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~ 69 (184)
+.||||.=..-.+.++|+++.-.+.-+...+.+++.++...+
T Consensus 62 liCgtGiG~~iaANK~~GIrAa~~~d~~~A~~ar~hNdaNVL 103 (140)
T PF02502_consen 62 LICGTGIGMSIAANKVPGIRAALCSDPYSAKMAREHNDANVL 103 (140)
T ss_dssp EEESSSHHHHHHHHTSTT--EEE-SSHHHHHHHHHTT--SEE
T ss_pred EEcCCChhhhhHhhcCCCEEEEeeCCHHHHHHHHHhcCCcEE
Confidence 346666555556666777666655545555555555444433
No 405
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=73.91 E-value=8.6 Score=30.76 Aligned_cols=88 Identities=20% Similarity=0.163 Sum_probs=47.4
Q ss_pred CCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHHH
Q 030025 21 HIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLK 99 (184)
Q Consensus 21 ~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~~ 99 (184)
..++|-=||+|. |......++.+ +.++++.|.+.. .......+ .++.+-+..+|+|++...+..-++.+...
T Consensus 115 ~gktvGIIG~G~IG~~vA~~l~a~-G~~V~~~dp~~~----~~~~~~~~--~~L~ell~~sDiI~lh~PLt~~g~~~T~~ 187 (378)
T PRK15438 115 HDRTVGIVGVGNVGRRLQARLEAL-GIKTLLCDPPRA----DRGDEGDF--RSLDELVQEADILTFHTPLFKDGPYKTLH 187 (378)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-CCEEEEECCccc----cccccccc--CCHHHHHhhCCEEEEeCCCCCCccccccc
Confidence 567888898873 65555555555 689999985210 00011111 11112234459998766554211112233
Q ss_pred HH-HHHHhhCCCCcEEE
Q 030025 100 LL-KNCHKSIPEGGKVI 115 (184)
Q Consensus 100 ~l-~~~~~~L~pgG~l~ 115 (184)
++ ++....||||.+|+
T Consensus 188 li~~~~l~~mk~gailI 204 (378)
T PRK15438 188 LADEKLIRSLKPGAILI 204 (378)
T ss_pred ccCHHHHhcCCCCcEEE
Confidence 44 45667788887775
No 406
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=73.82 E-value=4.8 Score=31.39 Aligned_cols=86 Identities=16% Similarity=0.105 Sum_probs=44.6
Q ss_pred CCeEEEecCCc-ChHHHHHHh-hCCCCeEEEeechhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHHH
Q 030025 22 IKQLVDVGGSL-GNTLKAITS-KYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLK 99 (184)
Q Consensus 22 ~~~ilDiG~G~-G~~~~~l~~-~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~~ 99 (184)
.++|.=||.|. |......++ .+ +.++++.|.....+.. ...++.+ .++.+-+..+|+|++...+. ++...
T Consensus 145 gktvGIiG~G~IG~~va~~l~~~f-gm~V~~~~~~~~~~~~-~~~~~~~--~~l~ell~~sDvv~lh~plt----~~T~~ 216 (323)
T PRK15409 145 HKTLGIVGMGRIGMALAQRAHFGF-NMPILYNARRHHKEAE-ERFNARY--CDLDTLLQESDFVCIILPLT----DETHH 216 (323)
T ss_pred CCEEEEEcccHHHHHHHHHHHhcC-CCEEEEECCCCchhhH-HhcCcEe--cCHHHHHHhCCEEEEeCCCC----hHHhh
Confidence 46777777653 433333333 33 5678877742110100 1112332 23333345569998855443 44455
Q ss_pred HH-HHHHhhCCCCcEEE
Q 030025 100 LL-KNCHKSIPEGGKVI 115 (184)
Q Consensus 100 ~l-~~~~~~L~pgG~l~ 115 (184)
++ ++....+|||.+|+
T Consensus 217 li~~~~l~~mk~ga~lI 233 (323)
T PRK15409 217 LFGAEQFAKMKSSAIFI 233 (323)
T ss_pred ccCHHHHhcCCCCeEEE
Confidence 55 34677789987776
No 407
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=73.36 E-value=5.1 Score=28.19 Aligned_cols=40 Identities=13% Similarity=0.047 Sum_probs=22.0
Q ss_pred CCcChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEE
Q 030025 30 GSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHV 69 (184)
Q Consensus 30 ~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~ 69 (184)
||||.=..-.+.++|+++.-.+.-+...+.++++++.+.+
T Consensus 65 CGTGiG~siaANK~~GIRAA~~~d~~~A~~ar~hNnaNVL 104 (171)
T PRK12615 65 CGTGVGINNAVNKVPGIRSALVRDMTTALYAKEELNANVI 104 (171)
T ss_pred cCCcHHHHHHHhcCCCeEEEEeCCHHHHHHHHHhcCCcEE
Confidence 5555544445566666665555445555555555544444
No 408
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=73.30 E-value=5.1 Score=27.53 Aligned_cols=88 Identities=16% Similarity=0.154 Sum_probs=43.4
Q ss_pred EEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhC---CCC----CCceE-----EEcccCccCCCCCEEEechhhhc
Q 030025 25 LVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHS---PEY----PGVKH-----VGGDMFQSVPNGDAILIKWILHD 91 (184)
Q Consensus 25 ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a---~~~----~~i~~-----~~~d~~~~~~~~D~i~~~~~l~~ 91 (184)
|.=+|+|.+..+.+..-.....+++.... ++.++.. +.. +++.+ ...|+.+-..++|+|++.-.-+.
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~~ 81 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQA 81 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GGG
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHHH
Confidence 55677776654443332223346666654 3333222 221 22211 22333333344588877443332
Q ss_pred CChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 92 WSDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 92 ~~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
...+++++...++++-.+++.
T Consensus 82 -----~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 82 -----HREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp -----HHHHHHHHTTTSHTT-EEEET
T ss_pred -----HHHHHHHHhhccCCCCEEEEe
Confidence 236899999999877777663
No 409
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=73.24 E-value=14 Score=32.22 Aligned_cols=147 Identities=13% Similarity=0.114 Sum_probs=77.7
Q ss_pred CCeEEEecCCcC--hHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----------------------CCceEEEcccCc
Q 030025 22 IKQLVDVGGSLG--NTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----------------------PGVKHVGGDMFQ 75 (184)
Q Consensus 22 ~~~ilDiG~G~G--~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----------------------~~i~~~~~d~~~ 75 (184)
.++|.=||+|+= .++..++. ..+..++..|. ++.++.+.++ .++++. .|+ +
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~-~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~-~ 385 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTAT-KAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDY-R 385 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHH-HcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CCh-H
Confidence 478999999873 44443442 33678888887 6666554321 123322 222 2
Q ss_pred cCCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhh-----------hh
Q 030025 76 SVPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVM-----------TQ 144 (184)
Q Consensus 76 ~~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~ 144 (184)
.+.++|+|+=. +.+.++ .+.++|+++-+.++|+..|.-.+...+-..-......-.....++++ ..
T Consensus 386 ~~~~aDlViEa-v~E~~~--~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~ 462 (708)
T PRK11154 386 GFKHADVVIEA-VFEDLA--LKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIP 462 (708)
T ss_pred HhccCCEEeec-ccccHH--HHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEEC
Confidence 33344777653 555443 34589999999999998776544332211000000000001111110 00
Q ss_pred CCCccccCHHHHHHHHHHcCCceeEEEeec
Q 030025 145 YPGGKERTKHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
.+.....+.+...+++++.|...+.+...+
T Consensus 463 g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~p 492 (708)
T PRK11154 463 HAKTSAETIATTVALAKKQGKTPIVVRDGA 492 (708)
T ss_pred CCCCCHHHHHHHHHHHHHcCCceEEEeccC
Confidence 111223356777888999999888775544
No 410
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=72.95 E-value=6.7 Score=26.62 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=19.3
Q ss_pred EecCCcC--hHHHHHH--hhCCCCeEEEeec-hhHh
Q 030025 27 DVGGSLG--NTLKAIT--SKYPHIKGINFDL-PHVI 57 (184)
Q Consensus 27 DiG~G~G--~~~~~l~--~~~~~~~~~~~D~-~~~~ 57 (184)
|||++.| ..+..++ ...+..+++.++. +...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~ 36 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNF 36 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHH
Confidence 8999999 6666654 3467889999997 6653
No 411
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=72.93 E-value=5.5 Score=30.86 Aligned_cols=25 Identities=12% Similarity=0.224 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 96 HCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 96 ~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
+....|+.+.++|+|||+|++.+..
T Consensus 218 ~L~~~L~~~~~~L~~gGrl~VISfH 242 (305)
T TIGR00006 218 ELEEALQFAPNLLAPGGRLSIISFH 242 (305)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecC
Confidence 3456788899999999999998764
No 412
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=72.91 E-value=41 Score=26.18 Aligned_cols=92 Identities=11% Similarity=0.185 Sum_probs=54.0
Q ss_pred CCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEE----c---ccCc---cC-C-CC-C--
Q 030025 19 FEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVG----G---DMFQ---SV-P-NG-D-- 81 (184)
Q Consensus 19 ~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~----~---d~~~---~~-~-~~-D-- 81 (184)
..+..+|+=.|+|. |..+..+++.. +.+++.++. +.-++.+++.. ++... . |..+ .. + .. |
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~~G-a~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~ 241 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKGFG-ADLTLNPKDKSAREVKKLIKAFAKARGLRST 241 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhC-CceEecCccccHHHHHHHHHhhcccCCCCCC
Confidence 67788999999864 66667777765 457888886 66666665442 22111 1 1111 01 1 11 3
Q ss_pred --EEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 82 --AILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 82 --~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
+|+- .+ ..+ ..++.+.+.|++||++++....
T Consensus 242 ~d~v~d-~~----g~~---~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 242 GWKIFE-CS----GSK---PGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred cCEEEE-CC----CCh---HHHHHHHHHHhcCCeEEEECcC
Confidence 3331 11 222 3577778899999999987643
No 413
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=72.65 E-value=6.4 Score=30.38 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 96 HCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 96 ~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
+...+|..+.++|+|||+|++....
T Consensus 222 ~L~~~L~~a~~~L~~gGRl~VIsFH 246 (314)
T COG0275 222 ELEEALEAALDLLKPGGRLAVISFH 246 (314)
T ss_pred HHHHHHHHHHHhhCCCcEEEEEEec
Confidence 4457899999999999999998764
No 414
>COG4353 Uncharacterized conserved protein [Function unknown]
Probab=72.55 E-value=16 Score=25.41 Aligned_cols=60 Identities=25% Similarity=0.228 Sum_probs=36.7
Q ss_pred HHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEeec
Q 030025 98 LKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 98 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
..+++-+++.|.|||.|++ +...+.. ..+.+. -+.......+--.|-++||+.++-+..+
T Consensus 73 ~~l~~~l~~~lspg~~lfV-eYv~DrE----------T~~~lq------kG~~p~atrLGfeL~k~GftwfkdWY~P 132 (192)
T COG4353 73 VKLYKVLYNFLSPGGKLFV-EYVRDRE----------TRYRLQ------KGKPPVATRLGFELLKAGFTWFKDWYFP 132 (192)
T ss_pred HHHHHHHHHhcCCCCceEE-EEEechh----------HHHHHH------cCCCCccchhhHHHHhCcceeeeeeecc
Confidence 5899999999999999887 3222221 111111 1222222333445678999999888765
No 415
>PLN00203 glutamyl-tRNA reductase
Probab=72.14 E-value=59 Score=27.38 Aligned_cols=98 Identities=13% Similarity=0.157 Sum_probs=47.1
Q ss_pred CCeEEEecCCcChHHHHHHhh---CCCCeEEEeec-hh-HhhhCCCCCCceEEEcccCc---cCCCCCEEEechhhhc-C
Q 030025 22 IKQLVDVGGSLGNTLKAITSK---YPHIKGINFDL-PH-VIQHSPEYPGVKHVGGDMFQ---SVPNGDAILIKWILHD-W 92 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~---~~~~~~~~~D~-~~-~~~~a~~~~~i~~~~~d~~~---~~~~~D~i~~~~~l~~-~ 92 (184)
..+|+=||+| ..+..+++. ....+++.++. .. ....+.+.+++.....++.+ ....+|+|++...--+ +
T Consensus 266 ~kkVlVIGAG--~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~pv 343 (519)
T PLN00203 266 SARVLVIGAG--KMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSETPL 343 (519)
T ss_pred CCEEEEEeCH--HHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCCCe
Confidence 6789999885 333333332 22235777765 33 22333333333222222212 2334599987643322 1
Q ss_pred ChHHHHHHHHHHHhhCCC-CcEEEEEeeecCCC
Q 030025 93 SDEHCLKLLKNCHKSIPE-GGKVIVVESVLPEL 124 (184)
Q Consensus 93 ~~~~~~~~l~~~~~~L~p-gG~l~i~~~~~~~~ 124 (184)
-.. +.++.+.+.-+. +..+++.|...|.+
T Consensus 344 I~~---e~l~~~~~~~~~~~~~~~~IDLAvPRd 373 (519)
T PLN00203 344 FLK---EHVEALPPASDTVGGKRLFVDISVPRN 373 (519)
T ss_pred eCH---HHHHHhhhcccccCCCeEEEEeCCCCC
Confidence 122 345544322111 34478889888754
No 416
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=71.80 E-value=15 Score=29.49 Aligned_cols=68 Identities=10% Similarity=0.031 Sum_probs=44.3
Q ss_pred CeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC--CCceEEEcccCcc------CCCCCEEEechhhh
Q 030025 23 KQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY--PGVKHVGGDMFQS------VPNGDAILIKWILH 90 (184)
Q Consensus 23 ~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~--~~i~~~~~d~~~~------~~~~D~i~~~~~l~ 90 (184)
++||=|||| .|......+.+....+++..|. ...++++... ++++..+.|+.+. ..+.|+|+.....+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~ 79 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPF 79 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCch
Confidence 578999996 3444444444444478999997 5666665544 5899999998872 12338777654433
No 417
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=71.59 E-value=42 Score=26.23 Aligned_cols=120 Identities=17% Similarity=0.181 Sum_probs=72.3
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCC-CCCceEEEcccCc----cCCC-C-CEEEechhhhcCC
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPE-YPGVKHVGGDMFQ----SVPN-G-DAILIKWILHDWS 93 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~----~~~~-~-D~i~~~~~l~~~~ 93 (184)
..+++|+=||.|.+..-+.... --.+..+|+ +..++.-+. ++...+...|+.. .+.. . |+++.......++
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS 81 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFS 81 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchh
Confidence 4689999999999998887765 224556676 665544433 3446666677764 2222 3 8888866665553
Q ss_pred --------hHHHH---HHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHH
Q 030025 94 --------DEHCL---KLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATE 162 (184)
Q Consensus 94 --------~~~~~---~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (184)
++... --+-++...++| .+++.|... . +.. . +..+.+.|.+.|++
T Consensus 82 ~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~-g------------l~~------~---~~~~~~~i~~~L~~ 137 (328)
T COG0270 82 IAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVK-G------------LLS------S---KGQTFDEIKKELEE 137 (328)
T ss_pred hcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCc-h------------HHh------c---CchHHHHHHHHHHH
Confidence 11111 223445555677 466655332 1 110 0 22367899999999
Q ss_pred cCCc
Q 030025 163 AGFS 166 (184)
Q Consensus 163 aGf~ 166 (184)
.||.
T Consensus 138 ~GY~ 141 (328)
T COG0270 138 LGYG 141 (328)
T ss_pred cCCc
Confidence 9997
No 418
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=71.55 E-value=16 Score=22.07 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=20.6
Q ss_pred CCCCCeEEEecCCcCh-HHHHHHhhC-CCCeEEEeec
Q 030025 19 FEHIKQLVDVGGSLGN-TLKAITSKY-PHIKGINFDL 53 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~-~~~~l~~~~-~~~~~~~~D~ 53 (184)
...+++||-|||.+|+ ++.+++..| .+...+++..
T Consensus 36 ~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~f 72 (78)
T PF12242_consen 36 INGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSF 72 (78)
T ss_dssp -TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE-
T ss_pred CCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEee
Confidence 5567899999999994 455555553 4566777654
No 419
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=71.29 E-value=21 Score=27.19 Aligned_cols=97 Identities=14% Similarity=0.191 Sum_probs=59.6
Q ss_pred HHHHhcCCCCCCeEEEec--CCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCC---CceEEEcccCc---cCC--CC
Q 030025 12 ILEAYKGFEHIKQLVDVG--GSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYP---GVKHVGGDMFQ---SVP--NG 80 (184)
Q Consensus 12 l~~~~~~~~~~~~ilDiG--~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~---~i~~~~~d~~~---~~~--~~ 80 (184)
+.++++ .++..+||--. .|-|..+..+++... .+.++.-. .+-.+.|+++. -|.+...|+.+ .+. .+
T Consensus 138 l~e~y~-vkpGhtVlvhaAAGGVGlll~Ql~ra~~-a~tI~~asTaeK~~~akenG~~h~I~y~~eD~v~~V~kiTngKG 215 (336)
T KOG1197|consen 138 LFEAYN-VKPGHTVLVHAAAGGVGLLLCQLLRAVG-AHTIATASTAEKHEIAKENGAEHPIDYSTEDYVDEVKKITNGKG 215 (336)
T ss_pred HHHhcC-CCCCCEEEEEeccccHHHHHHHHHHhcC-cEEEEEeccHHHHHHHHhcCCcceeeccchhHHHHHHhccCCCC
Confidence 344566 88888877654 678888888888753 44444443 55555555541 25555556654 232 33
Q ss_pred -CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 81 -DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 81 -D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
|+++=+ + .. ..|+.-..+|||+|+++--..
T Consensus 216 Vd~vyDs--v---G~----dt~~~sl~~Lk~~G~mVSfG~ 246 (336)
T KOG1197|consen 216 VDAVYDS--V---GK----DTFAKSLAALKPMGKMVSFGN 246 (336)
T ss_pred ceeeecc--c---cc----hhhHHHHHHhccCceEEEecc
Confidence 665432 2 21 348888899999999987543
No 420
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=71.21 E-value=5.7 Score=27.94 Aligned_cols=40 Identities=13% Similarity=0.033 Sum_probs=19.8
Q ss_pred CCcChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEE
Q 030025 30 GSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHV 69 (184)
Q Consensus 30 ~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~ 69 (184)
||||.=..-.+.++|+++...+.-+...+.++++++.+.+
T Consensus 65 CGTGiG~siaANKv~GIRAA~~~d~~sA~~aR~hNnaNVL 104 (171)
T PRK08622 65 CGTGVGISNAVNKVPGIRSALVRDMTSALYAKEELNANVI 104 (171)
T ss_pred cCCcHHHHHHHhcCCCeEEEEeCCHHHHHHHHHhcCCcEE
Confidence 5555444445555555555544434555555555444433
No 421
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=71.18 E-value=11 Score=34.78 Aligned_cols=93 Identities=10% Similarity=-0.011 Sum_probs=52.7
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeechhHhhhCCCC-CCceEEEcccCc-cCC--C-CCEEEechhhhcC-
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEY-PGVKHVGGDMFQ-SVP--N-GDAILIKWILHDW- 92 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~-~~i~~~~~d~~~-~~~--~-~D~i~~~~~l~~~- 92 (184)
.....++||+|.|-- ++-|...-+...++.+|.....+...-. ....|+++|+.. .+- . .|.+.|..+|..-
T Consensus 820 ~~~~~~~lDLGTGPE--~RiLsliP~~~pvtmvD~RP~ae~m~~w~t~T~y~~~DYl~~~~~~~~~~D~vtailSLGAAa 897 (1289)
T PF06016_consen 820 RTDPDHWLDLGTGPE--CRILSLIPPDTPVTMVDTRPFAEPMNCWNTQTQYIQADYLSDAWWNGTPFDAVTAILSLGAAA 897 (1289)
T ss_dssp TCCC-CEEEET--TT---CHHHCS-TTSEEEEEESS--SSSCCCCSTTEEEEES-TTSCCGGCC---SEEEECTCHHHHH
T ss_pred ccCcceEEEccCCcc--ceeeeccCCCCceEEEecCCcccccchhhhcceeeeeccccceeEecCCCCEEEEEeeehhhh
Confidence 445689999876654 3333333356889999984433333222 568999999987 322 2 2999887776642
Q ss_pred --ChHHHHHHHHHHHhhCCCCcE
Q 030025 93 --SDEHCLKLLKNCHKSIPEGGK 113 (184)
Q Consensus 93 --~~~~~~~~l~~~~~~L~pgG~ 113 (184)
..-.....++++.+.+++.|.
T Consensus 898 A~a~~tl~~~l~~~l~~~~~~~~ 920 (1289)
T PF06016_consen 898 ASANVTLDAGLQQFLSQCVQANV 920 (1289)
T ss_dssp HHCT--HHHHHHHHHHHHHCTT-
T ss_pred hcCCCcHHHHHHHHHHHHHhCCc
Confidence 233445678888777766653
No 422
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=71.16 E-value=45 Score=25.69 Aligned_cols=95 Identities=13% Similarity=0.153 Sum_probs=53.2
Q ss_pred HHhcCCCCCCeEEEecCC-cChHHHHHHhhCCCCe-EEEeec-hhHhhhCCCCCCceEEE----cc---cCccCC-CC-C
Q 030025 14 EAYKGFEHIKQLVDVGGS-LGNTLKAITSKYPHIK-GINFDL-PHVIQHSPEYPGVKHVG----GD---MFQSVP-NG-D 81 (184)
Q Consensus 14 ~~~~~~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~-~~~~D~-~~~~~~a~~~~~i~~~~----~d---~~~~~~-~~-D 81 (184)
.... ..+..+||=.|+| .|..+..+++.. +.+ ++.++. +.-.+.+++.. +..+. .+ +.+..+ .. |
T Consensus 157 ~~~~-~~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~~g-a~~~i~~~~~~~~~~~~~~~~~~~d 233 (339)
T cd08239 157 RRVG-VSGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKALG-ADFVINSGQDDVQEIRELTSGAGAD 233 (339)
T ss_pred HhcC-CCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhC-CCEEEcCCcchHHHHHHHhCCCCCC
Confidence 3444 6678888888865 445555566654 455 888876 55555554432 21111 11 001011 13 7
Q ss_pred EEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 82 AILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 82 ~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+++-.. ..+ ..+....+.|+++|++++...
T Consensus 234 ~vid~~-----g~~---~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 234 VAIECS-----GNT---AARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred EEEECC-----CCH---HHHHHHHHHhhcCCEEEEEcC
Confidence 776422 112 346777889999999997654
No 423
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=71.05 E-value=27 Score=26.76 Aligned_cols=90 Identities=10% Similarity=0.141 Sum_probs=53.8
Q ss_pred CCCCCeEEEec--CCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEE-Ecc----cCc---cC-CCC-CEEEe
Q 030025 19 FEHIKQLVDVG--GSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHV-GGD----MFQ---SV-PNG-DAILI 85 (184)
Q Consensus 19 ~~~~~~ilDiG--~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~-~~d----~~~---~~-~~~-D~i~~ 85 (184)
..+..+||=.| .|.|..+..+++.. +.+++.++. +.-.+.+++. +++.+ ..+ ..+ .. +.. |+++-
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~l-Ga~~vi~~~~~~~~~~~~~~~~~~gvdvv~d 213 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKKL-GFDVAFNYKTVKSLEETLKKASPDGYDCYFD 213 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc-CCCEEEeccccccHHHHHHHhCCCCeEEEEE
Confidence 67788999888 45778888888775 567777765 5555555443 22211 111 111 11 123 66653
Q ss_pred chhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 86 KWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 86 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
. ... ..+....+.|+|+|+++....
T Consensus 214 ~-----~G~----~~~~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 214 N-----VGG----EFSNTVIGQMKKFGRIAICGA 238 (325)
T ss_pred C-----CCH----HHHHHHHHHhCcCcEEEEecc
Confidence 2 222 236788899999999997653
No 424
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=70.98 E-value=17 Score=27.84 Aligned_cols=80 Identities=11% Similarity=0.189 Sum_probs=44.2
Q ss_pred CCCCeEEEecCCcChHHHHHHhhCCCCe----EEEeechhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChH
Q 030025 20 EHIKQLVDVGGSLGNTLKAITSKYPHIK----GINFDLPHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDE 95 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~~~l~~~~~~~~----~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~ 95 (184)
.+...|+=+|++.|.....|.+.++... .+.+|........+..++++++.. . +. +
T Consensus 57 ~~~~~VVYiGsApG~Hi~~L~~lf~~~~~~i~wvLiDp~~f~~~l~~l~~v~l~~~----------------f---ft-e 116 (294)
T PF01358_consen 57 DGPVTVVYIGSAPGTHIPFLFDLFPDLKVPIKWVLIDPRPFCISLEELSNVTLIQR----------------F---FT-E 116 (294)
T ss_dssp TT-EEEEEES-SS-HHHHHHHHHHHHTT--EEEEEEESS---GGGTT-TTEEEEES-----------------------H
T ss_pred CCceEEEEecCCCcchHHHHHHHHHhcCCceEEEEECCcchhhhhcccCcEEeehh----------------h---CC-H
Confidence 3446899999999999999999887744 899997333323333344443322 1 12 2
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 96 HCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 96 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
+.++++++.+.+ ..|+|+|.-..+
T Consensus 117 ---e~~~~~~~~~~~-~illISDIRS~~ 140 (294)
T PF01358_consen 117 ---EYARRLRDKLNL-KILLISDIRSGD 140 (294)
T ss_dssp ---HHHHHHHHHHTT-EEEEEE------
T ss_pred ---HHHHHHHhhcCC-CeEEEEecccCC
Confidence 346677777666 778888865433
No 425
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=70.93 E-value=25 Score=26.94 Aligned_cols=84 Identities=12% Similarity=0.146 Sum_probs=40.4
Q ss_pred EEEecCCcChHHHHHHhhC--CCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCC---CCCEEEechhhhcCChHHHH
Q 030025 25 LVDVGGSLGNTLKAITSKY--PHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVP---NGDAILIKWILHDWSDEHCL 98 (184)
Q Consensus 25 ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~---~~D~i~~~~~l~~~~~~~~~ 98 (184)
|-=||+| .....+++.. ...++++.|. +...+.+.+. ++.. ..+..+-.. ..|+|++... +++...
T Consensus 3 Ig~IGlG--~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~-g~~~-~~s~~~~~~~~~~advVi~~vp----~~~~~~ 74 (299)
T PRK12490 3 LGLIGLG--KMGGNMAERLREDGHEVVGYDVNQEAVDVAGKL-GITA-RHSLEELVSKLEAPRTIWVMVP----AGEVTE 74 (299)
T ss_pred EEEEccc--HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHC-CCee-cCCHHHHHHhCCCCCEEEEEec----CchHHH
Confidence 4445554 4444444431 2457778887 5444443322 2221 112211111 1377766332 222445
Q ss_pred HHHHHHHhhCCCCcEEEE
Q 030025 99 KLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 99 ~~l~~~~~~L~pgG~l~i 116 (184)
.++..+...++||..++-
T Consensus 75 ~v~~~i~~~l~~g~ivid 92 (299)
T PRK12490 75 SVIKDLYPLLSPGDIVVD 92 (299)
T ss_pred HHHHHHhccCCCCCEEEE
Confidence 677888888887754433
No 426
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=70.81 E-value=15 Score=32.03 Aligned_cols=149 Identities=11% Similarity=0.042 Sum_probs=79.2
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----------------------CCceEEEcccCcc
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----------------------PGVKHVGGDMFQS 76 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----------------------~~i~~~~~d~~~~ 76 (184)
+.++|.=||+|+=.......-...+..++..|. ++.++.+.++ .++++. .|+ +.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~ 389 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSY-AG 389 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH-HH
Confidence 446799999996444433333334788899997 6666554321 123222 122 22
Q ss_pred CCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhh-----------hhC
Q 030025 77 VPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVM-----------TQY 145 (184)
Q Consensus 77 ~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 145 (184)
+.++|+|+= .+.+.++ -..++|+++-+.++|+..|.-.+...+-..-......-.....++++ ...
T Consensus 390 ~~~aDlViE-av~E~l~--~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g 466 (714)
T TIGR02437 390 FDNVDIVVE-AVVENPK--VKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRG 466 (714)
T ss_pred hcCCCEEEE-cCcccHH--HHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCC
Confidence 334487765 3556543 34589999999999997776644333211000000000001111110 000
Q ss_pred CCccccCHHHHHHHHHHcCCceeEEEeec
Q 030025 146 PGGKERTKHEFTTLATEAGFSGIRFVCFF 174 (184)
Q Consensus 146 ~~~~~~~~~~~~~~l~~aGf~~i~~~~~~ 174 (184)
......+.+...+++++.|-..+.+...+
T Consensus 467 ~~Ts~~~~~~~~~~~~~lgk~pv~v~d~p 495 (714)
T TIGR02437 467 EKSSDETIATVVAYASKMGKTPIVVNDCP 495 (714)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEeCCcc
Confidence 11223356777888999998888776544
No 427
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=70.44 E-value=6.2 Score=27.76 Aligned_cols=39 Identities=10% Similarity=0.006 Sum_probs=17.7
Q ss_pred CCcChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceE
Q 030025 30 GSLGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKH 68 (184)
Q Consensus 30 ~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~ 68 (184)
||||.=..-.+.++|+++.-.+.-+...+.+++.++.+.
T Consensus 65 CGTGiG~siaANKv~GIRAAl~~d~~sA~~ar~hNnaNV 103 (171)
T TIGR01119 65 CGTGVGINNAVNKVPGVRSALVRDMTSALYAKEELNANV 103 (171)
T ss_pred cCCcHHHHHHHhcCCCeEEEEeCCHHHHHHHHHhcCCcE
Confidence 444443333445555555444433444444444444333
No 428
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=70.42 E-value=6.8 Score=30.22 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 96 HCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 96 ~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
+...+|..+..+|+|||++++.+..
T Consensus 214 ~L~~~L~~~~~~L~~gGrl~visfH 238 (296)
T PRK00050 214 ELERALEAALDLLKPGGRLAVISFH 238 (296)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecC
Confidence 4457888999999999999998764
No 429
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=70.38 E-value=11 Score=30.09 Aligned_cols=93 Identities=9% Similarity=0.151 Sum_probs=47.3
Q ss_pred CCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCC-CCC-ceEEEcc---cCccCCCCCEEEechhhhcCC
Q 030025 21 HIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPE-YPG-VKHVGGD---MFQSVPNGDAILIKWILHDWS 93 (184)
Q Consensus 21 ~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-~~~-i~~~~~d---~~~~~~~~D~i~~~~~l~~~~ 93 (184)
+..+|+=+|+| .|..+...++.. +++++.+|. +.-.+.+.. ... +.....+ +.+.....|+|+..-..---.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~ 244 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGL-GATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAK 244 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCC
Confidence 35679999887 566666666655 458888987 444433322 221 1111111 111223449988643221000
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEE
Q 030025 94 DEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 94 ~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
.+ .-+-++..+.++||+.++-
T Consensus 245 ~p--~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 245 AP--KLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred CC--cCcCHHHHhcCCCCCEEEE
Confidence 11 0123455566899987664
No 430
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=69.78 E-value=13 Score=24.86 Aligned_cols=70 Identities=7% Similarity=0.046 Sum_probs=36.8
Q ss_pred CCCeEEEecCC-cCh-HHHHHHhhCCCCeEEEeec--hhHhhhCCCC--CCceEEEcccCc-cCCCCCEEEechhhhc
Q 030025 21 HIKQLVDVGGS-LGN-TLKAITSKYPHIKGINFDL--PHVIQHSPEY--PGVKHVGGDMFQ-SVPNGDAILIKWILHD 91 (184)
Q Consensus 21 ~~~~ilDiG~G-~G~-~~~~l~~~~~~~~~~~~D~--~~~~~~a~~~--~~i~~~~~d~~~-~~~~~D~i~~~~~l~~ 91 (184)
+.+++|=+|+| .|. ....+.+. ...+++.++- ..+.+.+.+. .++.+...+-.. ..+++|+|+......+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGM 87 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCC
Confidence 47899999986 332 33333333 2234666664 3333333333 345555554333 2334599988766654
No 431
>PRK10867 signal recognition particle protein; Provisional
Probab=69.43 E-value=61 Score=26.57 Aligned_cols=99 Identities=19% Similarity=0.202 Sum_probs=55.7
Q ss_pred CCeEEEec-CCcChHH------HHHHhh-CCCCeEEEeec--hhHhhhCC---CCCCceEEEccc-Ccc-----------
Q 030025 22 IKQLVDVG-GSLGNTL------KAITSK-YPHIKGINFDL--PHVIQHSP---EYPGVKHVGGDM-FQS----------- 76 (184)
Q Consensus 22 ~~~ilDiG-~G~G~~~------~~l~~~-~~~~~~~~~D~--~~~~~~a~---~~~~i~~~~~d~-~~~----------- 76 (184)
+..|+=+| .|+|-++ ..+.+. ...+-++..|. +...+..+ +..++.+..... .++
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a 179 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEA 179 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHH
Confidence 45677777 5677554 223233 23345566664 33332221 224565554321 111
Q ss_pred C-CCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 77 V-PNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 77 ~-~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
. ..+|+|++-.+-.+..+++....+..+.+.++|...+++.+..
T Consensus 180 ~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~ 224 (433)
T PRK10867 180 KENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAM 224 (433)
T ss_pred HhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecc
Confidence 0 1238998866654434555557788899999999999888854
No 432
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=69.08 E-value=7 Score=26.93 Aligned_cols=8 Identities=25% Similarity=0.505 Sum_probs=4.1
Q ss_pred CeEEEecC
Q 030025 23 KQLVDVGG 30 (184)
Q Consensus 23 ~~ilDiG~ 30 (184)
-.|.|+|+
T Consensus 31 ~eV~D~G~ 38 (151)
T PTZ00215 31 YKIEDMGT 38 (151)
T ss_pred CEEEEcCC
Confidence 34555554
No 433
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=68.90 E-value=4.8 Score=29.62 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=43.4
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSP 61 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~ 61 (184)
....++.+. -.+.+.-+|.--|.|..+..+++++++.+..+.|. |-+.+.|+
T Consensus 32 ~devl~~ls-pv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~ 84 (303)
T KOG2782|consen 32 LDEVLDILS-PVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAH 84 (303)
T ss_pred hhhHHHHcC-CCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHH
Confidence 566777776 66788999999999999999999999999999997 66666554
No 434
>PLN02494 adenosylhomocysteinase
Probab=68.76 E-value=21 Score=29.52 Aligned_cols=101 Identities=13% Similarity=0.090 Sum_probs=56.9
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEe
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILI 85 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~ 85 (184)
+.+.+....+..-..++|+=+|+| .|......++.+ +++++++|. +.-...+.. ....+. ++.+.++.+|+|+.
T Consensus 240 ~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp~r~~eA~~-~G~~vv--~leEal~~ADVVI~ 315 (477)
T PLN02494 240 LPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDPICALQALM-EGYQVL--TLEDVVSEADIFVT 315 (477)
T ss_pred HHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhhHHHHh-cCCeec--cHHHHHhhCCEEEE
Confidence 355566665523457899999988 343333344434 568888887 432222221 122222 22223344598887
Q ss_pred chhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 86 KWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 86 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
..--.+ -+..+..+.+||||.|+....
T Consensus 316 tTGt~~-------vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 316 TTGNKD-------IIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred CCCCcc-------chHHHHHhcCCCCCEEEEcCC
Confidence 222111 234778889999999988654
No 435
>PLN02827 Alcohol dehydrogenase-like
Probab=68.30 E-value=58 Score=25.82 Aligned_cols=92 Identities=15% Similarity=0.188 Sum_probs=52.3
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceE-EEc-----ccCc---cC-CCC-CEEEe
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKH-VGG-----DMFQ---SV-PNG-DAILI 85 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~-~~~-----d~~~---~~-~~~-D~i~~ 85 (184)
+.+..+||-.|+| .|..+..+++......++++|. +.-.+.+++.. +.. +.. +... .. +.. |+|+-
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lG-a~~~i~~~~~~~~~~~~v~~~~~~g~d~vid 269 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFG-VTDFINPNDLSEPIQQVIKRMTGGGADYSFE 269 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcC-CcEEEcccccchHHHHHHHHHhCCCCCEEEE
Confidence 6778899999865 4455555666553335778885 65566655442 221 111 1111 01 113 76654
Q ss_pred chhhhcCChHHHHHHHHHHHhhCCCC-cEEEEEee
Q 030025 86 KWILHDWSDEHCLKLLKNCHKSIPEG-GKVIVVES 119 (184)
Q Consensus 86 ~~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 119 (184)
.. ..+ ..+....+.+++| |++++...
T Consensus 270 ~~-----G~~---~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 270 CV-----GDT---GIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred CC-----CCh---HHHHHHHHhhccCCCEEEEECC
Confidence 22 222 3477888899998 99987543
No 436
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=68.13 E-value=19 Score=26.07 Aligned_cols=62 Identities=8% Similarity=-0.004 Sum_probs=37.6
Q ss_pred CCeEEEecCCcChHH--HHHHhhCCCCeEEEeec---hhHhhhCCCCCCceEEEcccCc-cCCCCCEEEec
Q 030025 22 IKQLVDVGGSLGNTL--KAITSKYPHIKGINFDL---PHVIQHSPEYPGVKHVGGDMFQ-SVPNGDAILIK 86 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~--~~l~~~~~~~~~~~~D~---~~~~~~a~~~~~i~~~~~d~~~-~~~~~D~i~~~ 86 (184)
.++||=||+|.-... ..+++. +++++.++. ++..+.+ +..++.++..++.. .+..+|+|++.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~--ga~VtVvsp~~~~~l~~l~-~~~~i~~~~~~~~~~dl~~~~lVi~a 76 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKA--GAQLRVIAEELESELTLLA-EQGGITWLARCFDADILEGAFLVIAA 76 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHH-HcCCEEEEeCCCCHHHhCCcEEEEEC
Confidence 579999999965433 333333 456777764 2333333 23478888888765 44445777663
No 437
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=68.02 E-value=10 Score=29.61 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=24.3
Q ss_pred CeEEEecCC--cChHHHHHHhhCCCCeEEEeec
Q 030025 23 KQLVDVGGS--LGNTLKAITSKYPHIKGINFDL 53 (184)
Q Consensus 23 ~~ilDiG~G--~G~~~~~l~~~~~~~~~~~~D~ 53 (184)
.+|+-||.| .|....-++.++|+.+++.+|.
T Consensus 2 ~kiccigagyvggptcavia~kcp~i~vtvvd~ 34 (481)
T KOG2666|consen 2 VKICCIGAGYVGGPTCAVIALKCPDIEVTVVDI 34 (481)
T ss_pred ceEEEecCcccCCcchheeeecCCceEEEEEec
Confidence 367888988 4555566677799999999997
No 438
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=68.00 E-value=64 Score=26.16 Aligned_cols=86 Identities=13% Similarity=0.112 Sum_probs=51.1
Q ss_pred eEEEecCCcChHHHHHHhhC--CCCeEEEeec-hhHhhhCCCCCCceEEEcccCcc-------CCCCCEEEechhhhcCC
Q 030025 24 QLVDVGGSLGNTLKAITSKY--PHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQS-------VPNGDAILIKWILHDWS 93 (184)
Q Consensus 24 ~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~~~~D~i~~~~~l~~~~ 93 (184)
+|+=+|+ |.++..+++.. .+..++.+|. +..++.+++..++.++.+|..++ ...+|.+++...
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~----- 74 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTD----- 74 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecC-----
Confidence 4666665 77777777653 3568889987 66666665545688888888761 223377766332
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEE
Q 030025 94 DEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 94 ~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
+++.-..+....+.+.|.-.++.
T Consensus 75 ~~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 75 SDETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred ChHHHHHHHHHHHHhcCCCeEEE
Confidence 22222344445555645555544
No 439
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=67.84 E-value=14 Score=30.97 Aligned_cols=87 Identities=18% Similarity=0.171 Sum_probs=47.8
Q ss_pred CCeEEEecCCc-ChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHHHH
Q 030025 22 IKQLVDVGGSL-GNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKL 100 (184)
Q Consensus 22 ~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~~~ 100 (184)
.++|.=||.|. |......++.+ +.++++.|.....+.+. ...+.+. +..+-++.+|+|++...+. ++...+
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~f-G~~V~~~d~~~~~~~~~-~~g~~~~--~l~ell~~aDiV~l~lP~t----~~t~~l 211 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAF-GMKVIAYDPYISPERAA-QLGVELV--SLDELLARADFITLHTPLT----PETRGL 211 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEECCCCChhHHH-hcCCEEE--cHHHHHhhCCEEEEccCCC----hHhhcC
Confidence 56788887763 43333333334 57899998511111111 1233333 3333345559998855443 344456
Q ss_pred H-HHHHhhCCCCcEEEE
Q 030025 101 L-KNCHKSIPEGGKVIV 116 (184)
Q Consensus 101 l-~~~~~~L~pgG~l~i 116 (184)
+ ++....+|||..|+=
T Consensus 212 i~~~~l~~mk~ga~lIN 228 (526)
T PRK13581 212 IGAEELAKMKPGVRIIN 228 (526)
T ss_pred cCHHHHhcCCCCeEEEE
Confidence 6 567788899887763
No 440
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.81 E-value=12 Score=29.73 Aligned_cols=32 Identities=9% Similarity=0.051 Sum_probs=26.1
Q ss_pred CCCC-CeEEEecCCcChHHHHHHhhCCCCeEEE
Q 030025 19 FEHI-KQLVDVGGSLGNTLKAITSKYPHIKGIN 50 (184)
Q Consensus 19 ~~~~-~~ilDiG~G~G~~~~~l~~~~~~~~~~~ 50 (184)
+.+. ..++|+|||-|.++.++....+.-.++-
T Consensus 179 l~~~~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l 211 (420)
T KOG2811|consen 179 LTAPSSCFVEFGAGRGELSRWVSDCLQIQNVYL 211 (420)
T ss_pred cCCCcceEEEecCCchHHHHHHHHHhccccEEE
Confidence 4444 7899999999999999999887766555
No 441
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=67.63 E-value=48 Score=25.19 Aligned_cols=90 Identities=14% Similarity=0.180 Sum_probs=47.3
Q ss_pred CeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------------------------CCceEEEcccCccC
Q 030025 23 KQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------------------------PGVKHVGGDMFQSV 77 (184)
Q Consensus 23 ~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------------------------~~i~~~~~d~~~~~ 77 (184)
.+|.=||+|+=..+....-...+.+++.+|. ++.++.+++. .++.+ ..|..+..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a~ 82 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEAV 82 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHHh
Confidence 5688888874333322222223567888887 5554444321 11221 12222223
Q ss_pred CCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 78 PNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 78 ~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
.++|+|+..-. .. .+-...+++++.+.++|+-.+..
T Consensus 83 ~~aDlVieavp-e~--~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 83 KDADLVIEAVP-ED--PEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred cCCCEEEEecc-CC--HHHHHHHHHHHHhhCCCCCEEEE
Confidence 34488877432 11 12345789999998887765543
No 442
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=67.53 E-value=37 Score=29.66 Aligned_cols=87 Identities=16% Similarity=0.177 Sum_probs=44.9
Q ss_pred CCeEEEecCCc--ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHH
Q 030025 22 IKQLVDVGGSL--GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCL 98 (184)
Q Consensus 22 ~~~ilDiG~G~--G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~ 98 (184)
..+|.=||+|. +.++..+.+.....+++++|. +..++.+++..-......|..+.....|+|+..-... ...
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-----~~~ 77 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-----AME 77 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-----HHH
Confidence 35677787763 233333333321246888887 5555544432211001111111133348888755443 345
Q ss_pred HHHHHHHhhCCCCcE
Q 030025 99 KLLKNCHKSIPEGGK 113 (184)
Q Consensus 99 ~~l~~~~~~L~pgG~ 113 (184)
.+++++.+.++++-.
T Consensus 78 ~vl~~l~~~~~~~~i 92 (735)
T PRK14806 78 KVLADLKPLLSEHAI 92 (735)
T ss_pred HHHHHHHHhcCCCcE
Confidence 778888888877643
No 443
>PRK06436 glycerate dehydrogenase; Provisional
Probab=67.38 E-value=18 Score=28.04 Aligned_cols=84 Identities=14% Similarity=0.152 Sum_probs=44.1
Q ss_pred CCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHHH
Q 030025 21 HIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLK 99 (184)
Q Consensus 21 ~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~~ 99 (184)
..++|.=||.|. |.....+++.+ +.++++.|.... ..++.....+..+-++.+|+|++...+. ++...
T Consensus 121 ~gktvgIiG~G~IG~~vA~~l~af-G~~V~~~~r~~~------~~~~~~~~~~l~ell~~aDiv~~~lp~t----~~T~~ 189 (303)
T PRK06436 121 YNKSLGILGYGGIGRRVALLAKAF-GMNIYAYTRSYV------NDGISSIYMEPEDIMKKSDFVLISLPLT----DETRG 189 (303)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-CCEEEEECCCCc------ccCcccccCCHHHHHhhCCEEEECCCCC----chhhc
Confidence 357888888773 54444444444 678999985210 0111111112222234458888855543 23333
Q ss_pred HH-HHHHhhCCCCcEEE
Q 030025 100 LL-KNCHKSIPEGGKVI 115 (184)
Q Consensus 100 ~l-~~~~~~L~pgG~l~ 115 (184)
++ ++....+|||..|+
T Consensus 190 li~~~~l~~mk~ga~lI 206 (303)
T PRK06436 190 MINSKMLSLFRKGLAII 206 (303)
T ss_pred CcCHHHHhcCCCCeEEE
Confidence 33 34666788876665
No 444
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=67.10 E-value=60 Score=25.55 Aligned_cols=92 Identities=13% Similarity=0.200 Sum_probs=53.1
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceE-EE-c----ccCc---cC-CCC-CEEEe
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKH-VG-G----DMFQ---SV-PNG-DAILI 85 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~-~~-~----d~~~---~~-~~~-D~i~~ 85 (184)
+.+..+||=.|+| .|..+..+++.....+++.+|. +.-++.+++.. +.. +. . +..+ .. +.. |+++-
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~G-a~~~i~~~~~~~~~~~~v~~~~~~g~d~vid 261 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLG-ATDCVNPNDYDKPIQEVIVEITDGGVDYSFE 261 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhC-CCeEEcccccchhHHHHHHHHhCCCCCEEEE
Confidence 6778899999875 4556666666653337888886 66666665432 111 11 0 1111 01 113 76654
Q ss_pred chhhhcCChHHHHHHHHHHHhhCCCC-cEEEEEee
Q 030025 86 KWILHDWSDEHCLKLLKNCHKSIPEG-GKVIVVES 119 (184)
Q Consensus 86 ~~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~i~~~ 119 (184)
.. ..+ ..+....+.++++ |++++...
T Consensus 262 ~~-----G~~---~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 262 CI-----GNV---NVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred CC-----CCH---HHHHHHHHHhhcCCCeEEEEec
Confidence 21 212 3577788899886 99887654
No 445
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=66.97 E-value=29 Score=28.13 Aligned_cols=85 Identities=13% Similarity=0.152 Sum_probs=47.8
Q ss_pred CCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHHH
Q 030025 21 HIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLK 99 (184)
Q Consensus 21 ~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~~ 99 (184)
..++|.=||.|. |......++.+ +.++++.|.... .....+.. ..++.+-+..+|+|++...+ .++...
T Consensus 150 ~gktvGIiG~G~IG~~vA~~~~~f-Gm~V~~~d~~~~----~~~~~~~~-~~~l~ell~~sDiVslh~Pl----t~~T~~ 219 (409)
T PRK11790 150 RGKTLGIVGYGHIGTQLSVLAESL-GMRVYFYDIEDK----LPLGNARQ-VGSLEELLAQSDVVSLHVPE----TPSTKN 219 (409)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCCcc----cccCCcee-cCCHHHHHhhCCEEEEcCCC----ChHHhh
Confidence 356788887764 54444444445 679999995210 00112221 11222234556999885443 244556
Q ss_pred HH-HHHHhhCCCCcEEE
Q 030025 100 LL-KNCHKSIPEGGKVI 115 (184)
Q Consensus 100 ~l-~~~~~~L~pgG~l~ 115 (184)
++ ++....+|||.+|+
T Consensus 220 li~~~~l~~mk~ga~lI 236 (409)
T PRK11790 220 MIGAEELALMKPGAILI 236 (409)
T ss_pred ccCHHHHhcCCCCeEEE
Confidence 66 45677788887776
No 446
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=66.61 E-value=4.7 Score=29.99 Aligned_cols=85 Identities=11% Similarity=0.069 Sum_probs=47.6
Q ss_pred HhHHHHHHHhcCCC-CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC----C----CceEEEcccCc-
Q 030025 7 LVLQKILEAYKGFE-HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY----P----GVKHVGGDMFQ- 75 (184)
Q Consensus 7 ~~~~~l~~~~~~~~-~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~----~i~~~~~d~~~- 75 (184)
.+++.+.+.-+... +.-++||||.|.--+=-.+..+--+++++|.|+ +..++.|+.. + .++.....-.+
T Consensus 63 ~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~ 142 (292)
T COG3129 63 HLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDA 142 (292)
T ss_pred HHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccc
Confidence 34444444433333 557899998776533332333323678899998 7777776542 2 24443222211
Q ss_pred cC----C---CCCEEEechhhhc
Q 030025 76 SV----P---NGDAILIKWILHD 91 (184)
Q Consensus 76 ~~----~---~~D~i~~~~~l~~ 91 (184)
-+ . .+|+..|+-.+|.
T Consensus 143 if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 143 IFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred cccccccccceeeeEecCCCcch
Confidence 12 1 1299999888885
No 447
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=66.61 E-value=6.2 Score=26.84 Aligned_cols=20 Identities=15% Similarity=0.082 Sum_probs=10.4
Q ss_pred HHHHHHHhcCCCCCCeEEEecC
Q 030025 9 LQKILEAYKGFEHIKQLVDVGG 30 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~ 30 (184)
-+.+.+++. +..-.|.|+|+
T Consensus 15 K~~i~~~L~--~~G~eV~D~G~ 34 (141)
T TIGR01118 15 KDVIKNFLV--DNGFEVIDVTE 34 (141)
T ss_pred HHHHHHHHH--HCCCEEEEcCC
Confidence 344444444 33446777776
No 448
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=66.46 E-value=23 Score=27.43 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=42.6
Q ss_pred CCCeEEEecCC-cChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHHH
Q 030025 21 HIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLK 99 (184)
Q Consensus 21 ~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~~ 99 (184)
..++|.=||.| .|.....+++.+ +.++++.|...- .. ...+. ..++.+-++.+|+|++...+. ++...
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~f-gm~V~~~d~~~~---~~-~~~~~--~~~l~ell~~sDvv~lh~Plt----~~T~~ 212 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAF-GAKVVYYSTSGK---NK-NEEYE--RVSLEELLKTSDIISIHAPLN----EKTKN 212 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhc-CCEEEEECCCcc---cc-ccCce--eecHHHHhhcCCEEEEeCCCC----chhhc
Confidence 35677777766 354444444445 679999985210 00 11122 122223345558887744432 22222
Q ss_pred HH-HHHHhhCCCCcEEE
Q 030025 100 LL-KNCHKSIPEGGKVI 115 (184)
Q Consensus 100 ~l-~~~~~~L~pgG~l~ 115 (184)
++ ++....+|||.+|+
T Consensus 213 li~~~~~~~Mk~~a~lI 229 (311)
T PRK08410 213 LIAYKELKLLKDGAILI 229 (311)
T ss_pred ccCHHHHHhCCCCeEEE
Confidence 33 33555677776665
No 449
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=66.31 E-value=6.4 Score=26.78 Aligned_cols=57 Identities=16% Similarity=0.119 Sum_probs=24.9
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcC---hHHHHHHhhC---CCCeEEEeec--hhHhhhCCCCCCceE
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLG---NTLKAITSKY---PHIKGINFDL--PHVIQHSPEYPGVKH 68 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G---~~~~~l~~~~---~~~~~~~~D~--~~~~~~a~~~~~i~~ 68 (184)
+.+.+++. +..-.|.|+|+.+- .++..+++.. +.-+++.+.- -.|.-.|.+.+++..
T Consensus 16 ~~l~~~L~--~~g~eV~D~G~~~~dypd~a~~va~~V~~~e~~~GIliCGtGiG~siaANKv~GIRa 80 (141)
T PRK12613 16 ELIKSFLQ--EEGYDIIDVTDINSDFIDNTLAVAKAVNEAEGRLGIMVDAYGAGPFMVATKLKGMVA 80 (141)
T ss_pred HHHHHHHH--HCCCEEEEcCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCCHhHhhhhhcCCCeEE
Confidence 34444443 33456777776322 2333333331 2234444442 234444555555543
No 450
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=66.21 E-value=56 Score=24.85 Aligned_cols=89 Identities=11% Similarity=0.059 Sum_probs=49.9
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCC-C-CCEEEechhhhcCCh
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVP-N-GDAILIKWILHDWSD 94 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~-~-~D~i~~~~~l~~~~~ 94 (184)
+.+..+||=.|+| .|..+..+++.. +.+++.++. ++..+.+++. ++.... +..+..+ . .|+++-.. ..
T Consensus 153 ~~~g~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~~~~~~~~~~~~~~-g~~~~~-~~~~~~~~~~~d~vid~~-----g~ 224 (319)
T cd08242 153 ITPGDKVAVLGDGKLGLLIAQVLALT-GPDVVLVGRHSEKLALARRL-GVETVL-PDEAESEGGGFDVVVEAT-----GS 224 (319)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHc-CCcEEe-CccccccCCCCCEEEECC-----CC
Confidence 6677888888753 333344444443 556777775 6666666543 222211 1111111 2 27776531 21
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 95 EHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 95 ~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
. ..++.+.+.|+++|+++...
T Consensus 225 ~---~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 225 P---SGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred h---HHHHHHHHHhhcCCEEEEEc
Confidence 1 34778888999999999743
No 451
>PLN02712 arogenate dehydrogenase
Probab=66.09 E-value=42 Score=29.19 Aligned_cols=82 Identities=13% Similarity=0.027 Sum_probs=43.7
Q ss_pred CCeEEEecCCc--ChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCccC-CCCCEEEechhhhcCChHHHH
Q 030025 22 IKQLVDVGGSL--GNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQSV-PNGDAILIKWILHDWSDEHCL 98 (184)
Q Consensus 22 ~~~ilDiG~G~--G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~-~~~D~i~~~~~l~~~~~~~~~ 98 (184)
..+|.=||+|. |.++..+.+. +.++++.|.....+.+++. ++.+ ..|..+.. ...|+|++.-.. ....
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~--G~~V~~~dr~~~~~~A~~~-Gv~~-~~d~~e~~~~~aDvViLavP~-----~~~~ 122 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQ--GHTVLAHSRSDHSLAARSL-GVSF-FLDPHDLCERHPDVILLCTSI-----ISTE 122 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHc-CCEE-eCCHHHHhhcCCCEEEEcCCH-----HHHH
Confidence 36799999763 3444444443 3578888863222333322 3332 12222212 224888885443 3445
Q ss_pred HHHHHHH-hhCCCCc
Q 030025 99 KLLKNCH-KSIPEGG 112 (184)
Q Consensus 99 ~~l~~~~-~~L~pgG 112 (184)
.+++++. ..++||.
T Consensus 123 ~vl~~l~~~~l~~g~ 137 (667)
T PLN02712 123 NVLKSLPLQRLKRNT 137 (667)
T ss_pred HHHHhhhhhcCCCCe
Confidence 6777775 5577776
No 452
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=65.70 E-value=13 Score=33.95 Aligned_cols=68 Identities=12% Similarity=0.069 Sum_probs=43.0
Q ss_pred CCCeEEEecCC-cChHHHHHHhhCCCCe-------------EEEeec-hh-HhhhCCCCCCceEEEcccCc--cC----C
Q 030025 21 HIKQLVDVGGS-LGNTLKAITSKYPHIK-------------GINFDL-PH-VIQHSPEYPGVKHVGGDMFQ--SV----P 78 (184)
Q Consensus 21 ~~~~ilDiG~G-~G~~~~~l~~~~~~~~-------------~~~~D~-~~-~~~~a~~~~~i~~~~~d~~~--~~----~ 78 (184)
+.++|+=|||| .|......+.+.++.. ++..|. .. ..+.++..+++..+..|+.+ .+ .
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 35789999998 4665555555556654 777786 33 33344445678788887765 22 2
Q ss_pred CCCEEEechh
Q 030025 79 NGDAILIKWI 88 (184)
Q Consensus 79 ~~D~i~~~~~ 88 (184)
..|+|++...
T Consensus 648 ~~DaVIsalP 657 (1042)
T PLN02819 648 QVDVVISLLP 657 (1042)
T ss_pred CCCEEEECCC
Confidence 3488877543
No 453
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=65.65 E-value=20 Score=27.53 Aligned_cols=82 Identities=12% Similarity=0.156 Sum_probs=43.0
Q ss_pred CcChHHHHHHhhC--CCCeEEEeec-hhH-hhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHHHHH---HH
Q 030025 31 SLGNTLKAITSKY--PHIKGINFDL-PHV-IQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLL---KN 103 (184)
Q Consensus 31 G~G~~~~~l~~~~--~~~~~~~~D~-~~~-~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~~~l---~~ 103 (184)
|.|.....|+++. .+..+++.|. +.- .+.+++. ....... ..+.....|+|++.-+ .+++...++ .-
T Consensus 7 GLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~-Ga~~a~s-~~eaa~~aDvVitmv~----~~~~V~~V~~g~~g 80 (286)
T COG2084 7 GLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAA-GATVAAS-PAEAAAEADVVITMLP----DDAAVRAVLFGENG 80 (286)
T ss_pred cCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHc-CCcccCC-HHHHHHhCCEEEEecC----CHHHHHHHHhCccc
Confidence 5666666666653 3467888886 443 4443322 1111100 0001122388887443 344445566 45
Q ss_pred HHhhCCCCcEEEEEe
Q 030025 104 CHKSIPEGGKVIVVE 118 (184)
Q Consensus 104 ~~~~L~pgG~l~i~~ 118 (184)
+...++||..++-..
T Consensus 81 ~~~~~~~G~i~IDmS 95 (286)
T COG2084 81 LLEGLKPGAIVIDMS 95 (286)
T ss_pred hhhcCCCCCEEEECC
Confidence 777788888776644
No 454
>PRK06153 hypothetical protein; Provisional
Probab=65.62 E-value=14 Score=29.64 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=29.1
Q ss_pred HHHHHhcCCCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEee
Q 030025 11 KILEAYKGFEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFD 52 (184)
Q Consensus 11 ~l~~~~~~~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D 52 (184)
.+.+.+. ..+|+=|||| +|......+.+.+-.+++.+|
T Consensus 169 ~~q~kL~----~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD 207 (393)
T PRK06153 169 ALSAKLE----GQRIAIIGLGGTGSYILDLVAKTPVREIHLFD 207 (393)
T ss_pred HHHHHHh----hCcEEEEcCCccHHHHHHHHHHcCCCEEEEEC
Confidence 3445554 6899999987 888888888777777888887
No 455
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=65.27 E-value=74 Score=25.88 Aligned_cols=100 Identities=9% Similarity=0.092 Sum_probs=47.7
Q ss_pred CCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhH-hhhCCCCCCceEEE-cccCccCCCCCEEEechhhhc-CCh
Q 030025 20 EHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHV-IQHSPEYPGVKHVG-GDMFQSVPNGDAILIKWILHD-WSD 94 (184)
Q Consensus 20 ~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~-~~~a~~~~~i~~~~-~d~~~~~~~~D~i~~~~~l~~-~~~ 94 (184)
.+..+|+-+|+| .|......+......+++.++. +.- .+.+++.. ..... .|..+....+|+|+....-.+ +-.
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g-~~~~~~~~~~~~l~~aDvVI~aT~s~~~~i~ 258 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFG-GEAIPLDELPEALAEADIVISSTGAPHPIIG 258 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcC-CcEeeHHHHHHHhccCCEEEECCCCCCcEEc
Confidence 356899999886 3433333333333336777776 332 22333332 12222 122222334599988654322 222
Q ss_pred HHHHHHHHHHHhhCCCCcEEEEEeeecCCC
Q 030025 95 EHCLKLLKNCHKSIPEGGKVIVVESVLPEL 124 (184)
Q Consensus 95 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 124 (184)
. ..++...+. ++++..++.|...|.+
T Consensus 259 ~---~~l~~~~~~-~~~~~~vviDla~Prd 284 (423)
T PRK00045 259 K---GMVERALKA-RRHRPLLLVDLAVPRD 284 (423)
T ss_pred H---HHHHHHHhh-ccCCCeEEEEeCCCCC
Confidence 2 234433221 3345566667766543
No 456
>PLN02688 pyrroline-5-carboxylate reductase
Probab=64.69 E-value=49 Score=24.70 Aligned_cols=85 Identities=13% Similarity=0.140 Sum_probs=44.1
Q ss_pred eEEEecCCc--ChHHHHHHhhC--CCCeEEEe-ec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHH
Q 030025 24 QLVDVGGSL--GNTLKAITSKY--PHIKGINF-DL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHC 97 (184)
Q Consensus 24 ~ilDiG~G~--G~~~~~l~~~~--~~~~~~~~-D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~ 97 (184)
+|.=||||. +.++..+++.. +..++++. +. +...+.+.+ .++... .+..+...+.|+|+..- ++...
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~-~g~~~~-~~~~e~~~~aDvVil~v-----~~~~~ 74 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQS-LGVKTA-ASNTEVVKSSDVIILAV-----KPQVV 74 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHH-cCCEEe-CChHHHHhcCCEEEEEE-----CcHHH
Confidence 456677773 34555555442 23367777 65 444333332 233321 12111122348887744 23445
Q ss_pred HHHHHHHHhhCCCCcEEE
Q 030025 98 LKLLKNCHKSIPEGGKVI 115 (184)
Q Consensus 98 ~~~l~~~~~~L~pgG~l~ 115 (184)
..+++.+...++||..++
T Consensus 75 ~~vl~~l~~~~~~~~~iI 92 (266)
T PLN02688 75 KDVLTELRPLLSKDKLLV 92 (266)
T ss_pred HHHHHHHHhhcCCCCEEE
Confidence 577888877787776544
No 457
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=64.69 E-value=48 Score=26.08 Aligned_cols=96 Identities=14% Similarity=0.172 Sum_probs=50.6
Q ss_pred CeEEEecCC-cChHHHHHHhh-CCCCeEEEeechhHhhhCCCCCCceEEEc-----------ccCccCCCCCEEEechhh
Q 030025 23 KQLVDVGGS-LGNTLKAITSK-YPHIKGINFDLPHVIQHSPEYPGVKHVGG-----------DMFQSVPNGDAILIKWIL 89 (184)
Q Consensus 23 ~~ilDiG~G-~G~~~~~l~~~-~~~~~~~~~D~~~~~~~a~~~~~i~~~~~-----------d~~~~~~~~D~i~~~~~l 89 (184)
.+|.=+|.| +|.....++.+ ..+++.-+.|...+.+....+.|..|..+ |+.+-...+|+|++.-.-
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence 356667766 45433333333 35667777764333333333333333321 111112224777764443
Q ss_pred hcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCC
Q 030025 90 HDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPE 123 (184)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 123 (184)
+ -...+++++...++++-.++...--.+.
T Consensus 82 ~-----~~r~v~~~l~~~l~~~~~iv~~sKGie~ 110 (329)
T COG0240 82 Q-----ALREVLRQLKPLLLKDAIIVSATKGLEP 110 (329)
T ss_pred H-----HHHHHHHHHhhhccCCCeEEEEeccccC
Confidence 3 3346788888888888888876654433
No 458
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=64.62 E-value=76 Score=25.79 Aligned_cols=100 Identities=11% Similarity=0.073 Sum_probs=46.5
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hh-HhhhCCCCCCceEEEc-ccCccCCCCCEEEechhh-hcCC
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PH-VIQHSPEYPGVKHVGG-DMFQSVPNGDAILIKWIL-HDWS 93 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~-~~~~a~~~~~i~~~~~-d~~~~~~~~D~i~~~~~l-~~~~ 93 (184)
..+..+|+=+|+| .|......+......+++.++. .. ..+.+++... ..+.. +..+....+|+|++...- +.+-
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~-~~i~~~~l~~~l~~aDvVi~aT~s~~~ii 255 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG-EAVKFEDLEEYLAEADIVISSTGAPHPIV 255 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC-eEeeHHHHHHHHhhCCEEEECCCCCCceE
Confidence 3456899999986 3433333333343356777775 33 2223333221 12211 111123344999886432 2221
Q ss_pred hHHHHHHHHHHHhhCCCCcEEEEEeeecCCC
Q 030025 94 DEHCLKLLKNCHKSIPEGGKVIVVESVLPEL 124 (184)
Q Consensus 94 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 124 (184)
.. +.++...+. ++ +.+++.|...|.+
T Consensus 256 ~~---e~l~~~~~~-~~-~~~~viDla~Prd 281 (417)
T TIGR01035 256 SK---EDVERALRE-RT-RPLFIIDIAVPRD 281 (417)
T ss_pred cH---HHHHHHHhc-CC-CCeEEEEeCCCCC
Confidence 21 234433221 12 4466767766543
No 459
>PRK07680 late competence protein ComER; Validated
Probab=64.46 E-value=42 Score=25.28 Aligned_cols=86 Identities=15% Similarity=0.155 Sum_probs=43.9
Q ss_pred eEEEecCCc--ChHHHHHHhhC--CCCeEEEeec-hhHhhhCCC-CCCceEEEcccCccCCCCCEEEechhhhcCChHHH
Q 030025 24 QLVDVGGSL--GNTLKAITSKY--PHIKGINFDL-PHVIQHSPE-YPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHC 97 (184)
Q Consensus 24 ~ilDiG~G~--G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~ 97 (184)
+|.=||||. +.++..+.+.. +...++..|. ++-.+...+ .+++... .|..+.....|+|++.- ++...
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~-~~~~~~~~~aDiVilav-----~p~~~ 75 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVA-KTIEEVISQSDLIFICV-----KPLDI 75 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEE-CCHHHHHHhCCEEEEec-----CHHHH
Confidence 456677764 33444444432 1135677775 333332222 2344322 22222223348887643 34445
Q ss_pred HHHHHHHHhhCCCCcEEE
Q 030025 98 LKLLKNCHKSIPEGGKVI 115 (184)
Q Consensus 98 ~~~l~~~~~~L~pgG~l~ 115 (184)
..+++++...++++..++
T Consensus 76 ~~vl~~l~~~l~~~~~ii 93 (273)
T PRK07680 76 YPLLQKLAPHLTDEHCLV 93 (273)
T ss_pred HHHHHHHHhhcCCCCEEE
Confidence 578888888888876544
No 460
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=64.45 E-value=17 Score=28.51 Aligned_cols=84 Identities=18% Similarity=0.238 Sum_probs=48.4
Q ss_pred CCeEEEecCCcChHHHHHHhhC--CCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHH
Q 030025 22 IKQLVDVGGSLGNTLKAITSKY--PHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCL 98 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~ 98 (184)
.+++-=| |.|.+.+.++++. -+.++...|. +. ....+.-+..+.. +.+-+..+|+|++...+. ++..
T Consensus 146 gktvGIi--G~GrIG~avA~r~~~Fgm~v~y~~~~~~--~~~~~~~~~~y~~--l~ell~~sDii~l~~Plt----~~T~ 215 (324)
T COG1052 146 GKTLGII--GLGRIGQAVARRLKGFGMKVLYYDRSPN--PEAEKELGARYVD--LDELLAESDIISLHCPLT----PETR 215 (324)
T ss_pred CCEEEEE--CCCHHHHHHHHHHhcCCCEEEEECCCCC--hHHHhhcCceecc--HHHHHHhCCEEEEeCCCC----hHHh
Confidence 3455555 5667777777663 3568888886 33 2222223355544 222344559998866554 3344
Q ss_pred HHH-HHHHhhCCCCcEEE
Q 030025 99 KLL-KNCHKSIPEGGKVI 115 (184)
Q Consensus 99 ~~l-~~~~~~L~pgG~l~ 115 (184)
.++ ++....+|||++|+
T Consensus 216 hLin~~~l~~mk~ga~lV 233 (324)
T COG1052 216 HLINAEELAKMKPGAILV 233 (324)
T ss_pred hhcCHHHHHhCCCCeEEE
Confidence 444 34667789988776
No 461
>PRK10458 DNA cytosine methylase; Provisional
Probab=64.37 E-value=83 Score=26.13 Aligned_cols=36 Identities=8% Similarity=0.115 Sum_probs=25.7
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhh
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQ 58 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~ 58 (184)
..+++|+=||.|.+..-+-... .-.+..+|. +.+.+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG-~~~v~a~Eid~~A~~ 124 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIG-GQCVFTSEWNKHAVR 124 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcC-CEEEEEEechHHHHH
Confidence 4589999999999999887653 224566776 54443
No 462
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=64.17 E-value=40 Score=25.88 Aligned_cols=84 Identities=17% Similarity=0.186 Sum_probs=40.8
Q ss_pred eEEEecCCc--ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCC---CCCEEEechhhhcCChHHH
Q 030025 24 QLVDVGGSL--GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVP---NGDAILIKWILHDWSDEHC 97 (184)
Q Consensus 24 ~ilDiG~G~--G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~---~~D~i~~~~~l~~~~~~~~ 97 (184)
+|-=||+|. ...+..+++. +.++++.|. +...+...+ .++... .+..+-.. ..|+|++...- ++..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~--g~~v~v~dr~~~~~~~~~~-~g~~~~-~~~~e~~~~~~~~dvvi~~v~~----~~~~ 73 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG--GHEVVGYDRNPEAVEALAE-EGATGA-DSLEELVAKLPAPRVVWLMVPA----GEIT 73 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHH-CCCeec-CCHHHHHhhcCCCCEEEEEecC----CcHH
Confidence 345566553 2334444443 457788887 544444322 223221 11111111 23777663321 2234
Q ss_pred HHHHHHHHhhCCCCcEEE
Q 030025 98 LKLLKNCHKSIPEGGKVI 115 (184)
Q Consensus 98 ~~~l~~~~~~L~pgG~l~ 115 (184)
..++..+...+++|..++
T Consensus 74 ~~v~~~l~~~l~~g~ivi 91 (301)
T PRK09599 74 DATIDELAPLLSPGDIVI 91 (301)
T ss_pred HHHHHHHHhhCCCCCEEE
Confidence 467788888888875433
No 463
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=64.13 E-value=39 Score=25.74 Aligned_cols=79 Identities=15% Similarity=0.277 Sum_probs=37.1
Q ss_pred CcChHHHHHHhhC--CCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHHHHH---HHH
Q 030025 31 SLGNTLKAITSKY--PHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKLL---KNC 104 (184)
Q Consensus 31 G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~~~l---~~~ 104 (184)
|.|.....++... .+.++++.|. +...+...+. ++.. ..+..+-....|+|++.-.- +.....++ +.+
T Consensus 3 GlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~-~~s~~~~~~~advVil~vp~----~~~~~~v~~g~~~l 76 (288)
T TIGR01692 3 GLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAA-GAQA-AASPAEAAEGADRVITMLPA----GQHVISVYSGDEGI 76 (288)
T ss_pred cccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHc-CCee-cCCHHHHHhcCCEEEEeCCC----hHHHHHHHcCcchH
Confidence 5555555555442 2347788886 4444333221 2211 11111112234888774321 12333455 566
Q ss_pred HhhCCCCcEEE
Q 030025 105 HKSIPEGGKVI 115 (184)
Q Consensus 105 ~~~L~pgG~l~ 115 (184)
...++||-.++
T Consensus 77 ~~~~~~g~~vi 87 (288)
T TIGR01692 77 LPKVAKGSLLI 87 (288)
T ss_pred hhcCCCCCEEE
Confidence 66777664443
No 464
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=64.07 E-value=2 Score=33.05 Aligned_cols=94 Identities=13% Similarity=0.133 Sum_probs=57.4
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC---C----CceEEEcccCccCCC--CCEEEechhhhc
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY---P----GVKHVGGDMFQSVPN--GDAILIKWILHD 91 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---~----~i~~~~~d~~~~~~~--~D~i~~~~~l~~ 91 (184)
...|+|+=+|.|+++...+-......+.+++. |..++..+.. + +.....+|-..+-+. +|-|.....
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGLl--- 271 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGLL--- 271 (351)
T ss_pred cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeeccc---
Confidence 37899999999999996665555678999998 8877766553 2 344455665543333 277755332
Q ss_pred CChHHHHHHHHHHHhhCCCCcE--EEEEeeec
Q 030025 92 WSDEHCLKLLKNCHKSIPEGGK--VIVVESVL 121 (184)
Q Consensus 92 ~~~~~~~~~l~~~~~~L~pgG~--l~i~~~~~ 121 (184)
|.-+ +=.-.+.++|+|.|- +=|.+...
T Consensus 272 -PSse--~~W~~A~k~Lk~eggsilHIHenV~ 300 (351)
T KOG1227|consen 272 -PSSE--QGWPTAIKALKPEGGSILHIHENVK 300 (351)
T ss_pred -cccc--cchHHHHHHhhhcCCcEEEEecccc
Confidence 2111 123345566666644 44555443
No 465
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=63.56 E-value=60 Score=24.28 Aligned_cols=97 Identities=20% Similarity=0.139 Sum_probs=57.7
Q ss_pred HHHHHHHhcCCCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCC-CEEEe
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNG-DAILI 85 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~-D~i~~ 85 (184)
+..+..++. -....++|=+|.= +|.+....+... ++++.+|+ |++.... .+++.|.. .....+.. |+|+=
T Consensus 30 a~ai~~~le-~~~~k~~lI~G~YltG~~iA~~L~~~--~eV~lvDI~p~lk~ll--~~~i~F~~--~~~~~~~~~DlIID 102 (252)
T PF06690_consen 30 ANAIKYWLE-GEEFKQALIFGAYLTGNFIASALSKK--CEVTLVDIHPHLKELL--NENIKFME--FRNGLEGNPDLIID 102 (252)
T ss_pred HHHHHHHhc-ccccceEEEEEEEeehHHHHHHhccC--ceEEEEeCcHHHHHHh--cCCCceee--ccCCCCCCCCEEEE
Confidence 345555665 5555699999853 555554444442 39999999 8887776 46777772 22222323 99987
Q ss_pred chhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 86 KWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 86 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
..-+.-+.++ .++++ .| ..+++-+|..
T Consensus 103 ~TGlGGv~~~----~Ls~~----~p-~v~IVEdP~~ 129 (252)
T PF06690_consen 103 TTGLGGVDPD----FLSKF----NP-KVFIVEDPKG 129 (252)
T ss_pred CCCCCCCCHH----HHhcc----CC-CEEEEECCCc
Confidence 6666655433 34443 33 3555555543
No 466
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=63.32 E-value=3.5 Score=29.69 Aligned_cols=20 Identities=25% Similarity=0.652 Sum_probs=17.9
Q ss_pred HHHHHHHHhhCCCCcEEEEE
Q 030025 98 LKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 98 ~~~l~~~~~~L~pgG~l~i~ 117 (184)
..++++++|+|||||.+++.
T Consensus 36 ~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 36 EEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHhhcCCCeeEEEE
Confidence 47899999999999999884
No 467
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=62.50 E-value=7.4 Score=26.50 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=27.0
Q ss_pred hHHHHHHHhcCCCCCCeEEEecCCc----ChHHHHHHhhC---CCCeEEEeec--hhHhhhCCCCCCceE
Q 030025 8 VLQKILEAYKGFEHIKQLVDVGGSL----GNTLKAITSKY---PHIKGINFDL--PHVIQHSPEYPGVKH 68 (184)
Q Consensus 8 ~~~~l~~~~~~~~~~~~ilDiG~G~----G~~~~~l~~~~---~~~~~~~~D~--~~~~~~a~~~~~i~~ 68 (184)
+-+.+.+++. ...-.|.|+|+.. -.++..+++.. +.-+++.+.- -.|--.|.+.++|..
T Consensus 14 lK~~l~~~L~--~~G~eV~D~G~~~~~dYpd~a~~va~~V~~~~~~~GIliCGTGiG~siaANK~~GIRA 81 (142)
T PRK08621 14 LKEVVKDYLE--DNKYEVVDVTEEGAEDFVDSTLAVAKEVNKSEDNLGIVIDAYGAGSFMVATKIKGMVA 81 (142)
T ss_pred HHHHHHHHHH--HCCCEEEECCCCCCCCcHHHHHHHHHHHHcCCCceEEEEcCCChhhhhhhhcCCCeEE
Confidence 3444455554 2345677777632 23444444442 2234444432 234445555555544
No 468
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=61.86 E-value=38 Score=25.00 Aligned_cols=65 Identities=14% Similarity=0.208 Sum_probs=39.5
Q ss_pred CCCeEEEecCCcChHHHH--HHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc-cCCCCCEEEec
Q 030025 21 HIKQLVDVGGSLGNTLKA--ITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ-SVPNGDAILIK 86 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~--l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~~~~D~i~~~ 86 (184)
+..+||=||+|.-..-+. |++....++++..+. +++.+.+ +..+++++..++.. .+..+++|++.
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~-~~~~i~~~~r~~~~~dl~g~~LViaA 92 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLK-KYGNLKLIKGNYDKEFIKDKHLIVIA 92 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHH-hCCCEEEEeCCCChHHhCCCcEEEEC
Confidence 467999999998765543 333333344444455 5554443 34678888877765 45445777664
No 469
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=61.29 E-value=77 Score=24.77 Aligned_cols=91 Identities=10% Similarity=0.067 Sum_probs=54.8
Q ss_pred CCCCCeEEEecC--CcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEE-c----ccCc---c-CCCC-CEEEe
Q 030025 19 FEHIKQLVDVGG--SLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVG-G----DMFQ---S-VPNG-DAILI 85 (184)
Q Consensus 19 ~~~~~~ilDiG~--G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~-~----d~~~---~-~~~~-D~i~~ 85 (184)
+.+..+||=.|+ |.|..+..+++.. ++++++++. +.-.+.+++.-+++.+. . +..+ . .+.. |+++-
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d 234 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFD 234 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEE
Confidence 677889999987 4788888888875 567887775 44444443211222111 1 1111 1 1223 76654
Q ss_pred chhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 86 KWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 86 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
. ... ..+....+.|++||++++...
T Consensus 235 ~-----vG~----~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 235 N-----VGG----DMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred C-----CCH----HHHHHHHHHhccCCEEEEECc
Confidence 2 121 357888899999999997654
No 470
>PRK06932 glycerate dehydrogenase; Provisional
Probab=61.13 E-value=22 Score=27.60 Aligned_cols=82 Identities=11% Similarity=0.043 Sum_probs=43.2
Q ss_pred CCeEEEecCCc-ChHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHHHH
Q 030025 22 IKQLVDVGGSL-GNTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLKL 100 (184)
Q Consensus 22 ~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~~~ 100 (184)
.++|.=||.|. |.....+++.+ ++++++.|.+... . ....+ .++.+-++.+|+|++...+. ++...+
T Consensus 147 gktvgIiG~G~IG~~va~~l~~f-g~~V~~~~~~~~~----~-~~~~~--~~l~ell~~sDiv~l~~Plt----~~T~~l 214 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQAL-GMKVLYAEHKGAS----V-CREGY--TPFEEVLKQADIVTLHCPLT----ETTQNL 214 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcC-CCEEEEECCCccc----c-ccccc--CCHHHHHHhCCEEEEcCCCC----hHHhcc
Confidence 46788887763 54444444444 5788888742110 0 00111 12222345569998855443 333344
Q ss_pred H-HHHHhhCCCCcEEE
Q 030025 101 L-KNCHKSIPEGGKVI 115 (184)
Q Consensus 101 l-~~~~~~L~pgG~l~ 115 (184)
+ ++....+|||.+|+
T Consensus 215 i~~~~l~~mk~ga~lI 230 (314)
T PRK06932 215 INAETLALMKPTAFLI 230 (314)
T ss_pred cCHHHHHhCCCCeEEE
Confidence 4 45666778887766
No 471
>PRK06223 malate dehydrogenase; Reviewed
Probab=60.77 E-value=74 Score=24.40 Aligned_cols=94 Identities=20% Similarity=0.197 Sum_probs=46.8
Q ss_pred CeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhh-CCCC--------CCceEEE-cccCccCCCCCEEEechhhh
Q 030025 23 KQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQH-SPEY--------PGVKHVG-GDMFQSVPNGDAILIKWILH 90 (184)
Q Consensus 23 ~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~-a~~~--------~~i~~~~-~d~~~~~~~~D~i~~~~~l~ 90 (184)
.+|.=||+|. |......+......+++.+|. ++..+. +... ....+.. .|. +...++|+|++..-.-
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~p 81 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGVP 81 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCCC
Confidence 4788899987 655544444332128888886 432211 1110 1223322 333 2344559888643111
Q ss_pred cCC-----------hHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 91 DWS-----------DEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 91 ~~~-----------~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
.-+ -+-...+++++.+.. |++++++..
T Consensus 82 ~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~t 119 (307)
T PRK06223 82 RKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVT 119 (307)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEec
Confidence 000 122345666666665 777777653
No 472
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=60.70 E-value=28 Score=28.81 Aligned_cols=96 Identities=13% Similarity=0.060 Sum_probs=52.7
Q ss_pred HHHHHHhcCCCCCCeEEEecCCcChHHHHHHhh--CCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEec
Q 030025 10 QKILEAYKGFEHIKQLVDVGGSLGNTLKAITSK--YPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIK 86 (184)
Q Consensus 10 ~~l~~~~~~~~~~~~ilDiG~G~G~~~~~l~~~--~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~ 86 (184)
+.+++..+..-..++|+=+|+|. .++.++++ .-++++++.|. +.....+.. .++... ++.+....+|+|++.
T Consensus 242 d~~~R~~~~~LaGKtVgVIG~G~--IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~-~G~~~~--~leell~~ADIVI~a 316 (476)
T PTZ00075 242 DGIFRATDVMIAGKTVVVCGYGD--VGKGCAQALRGFGARVVVTEIDPICALQAAM-EGYQVV--TLEDVVETADIFVTA 316 (476)
T ss_pred HHHHHhcCCCcCCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCchhHHHHHh-cCceec--cHHHHHhcCCEEEEC
Confidence 44444433223578999999885 44444433 23568888875 333222221 233322 222233445999874
Q ss_pred hhhhcCChHHHHHHH-HHHHhhCCCCcEEEEEe
Q 030025 87 WILHDWSDEHCLKLL-KNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 87 ~~l~~~~~~~~~~~l-~~~~~~L~pgG~l~i~~ 118 (184)
. .. ..++ ++....+|||++|+-..
T Consensus 317 t-----Gt---~~iI~~e~~~~MKpGAiLINvG 341 (476)
T PTZ00075 317 T-----GN---KDIITLEHMRRMKNNAIVGNIG 341 (476)
T ss_pred C-----Cc---ccccCHHHHhccCCCcEEEEcC
Confidence 2 11 1345 37888899999988654
No 473
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=60.66 E-value=15 Score=21.23 Aligned_cols=18 Identities=6% Similarity=0.148 Sum_probs=15.4
Q ss_pred HHHHHHhhCCCCcEEEEE
Q 030025 100 LLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 100 ~l~~~~~~L~pgG~l~i~ 117 (184)
-++++.+++..||.|++.
T Consensus 52 ~~~~l~~~v~~G~~lvl~ 69 (70)
T PF14258_consen 52 EAEALLEWVEAGNTLVLA 69 (70)
T ss_pred HHHHHHHHHHcCCEEEEe
Confidence 377888999999999985
No 474
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=60.35 E-value=61 Score=24.53 Aligned_cols=88 Identities=9% Similarity=0.064 Sum_probs=44.9
Q ss_pred CeEEEecCCc--ChHHHHHHhhC--CCCeEEEeec-h-hHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHH
Q 030025 23 KQLVDVGGSL--GNTLKAITSKY--PHIKGINFDL-P-HVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEH 96 (184)
Q Consensus 23 ~~ilDiG~G~--G~~~~~l~~~~--~~~~~~~~D~-~-~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~ 96 (184)
.+|.=||||. +.+...+++.. +..+++..|. + ..++......++... .|..+....+|+|++.- ++..
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~-~~~~e~~~~aDvVilav-----~p~~ 77 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGT-HNKKELLTDANILFLAM-----KPKD 77 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEe-CCHHHHHhcCCEEEEEe-----CHHH
Confidence 4677787772 24444444432 2245666764 3 222222222234322 22222223348887743 3444
Q ss_pred HHHHHHHHHhhCCCCcEEEE
Q 030025 97 CLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 97 ~~~~l~~~~~~L~pgG~l~i 116 (184)
...+++.+...++++..++-
T Consensus 78 ~~~vl~~l~~~~~~~~liIs 97 (279)
T PRK07679 78 VAEALIPFKEYIHNNQLIIS 97 (279)
T ss_pred HHHHHHHHHhhcCCCCEEEE
Confidence 55778888888877665443
No 475
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=60.30 E-value=53 Score=23.86 Aligned_cols=70 Identities=23% Similarity=0.133 Sum_probs=48.4
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCccCCCC-CEEEechhhhcCCh
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNG-DAILIKWILHDWSD 94 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~-D~i~~~~~l~~~~~ 94 (184)
....+.||-+|.= ||.+...++++ .++++.+|+ |.|....+ +++.|... ..+.+.. |+|+=..-+.-..+
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~r~~lp--~~v~Fr~~--~~~~~G~~DlivDlTGlGG~~P 114 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFMRGFLP--NNVKFRNL--LKFIRGEVDLIVDLTGLGGIEP 114 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHHHhcCC--CCccHhhh--cCCCCCceeEEEeccccCCCCH
Confidence 4567899999865 88888877776 679999999 77755544 55665543 2333333 99988777766554
No 476
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=60.22 E-value=6.1 Score=30.67 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 96 HCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 96 ~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
+....|..+..+|+|||++++....
T Consensus 219 ~L~~~L~~a~~~L~~gGrl~VISFH 243 (310)
T PF01795_consen 219 ELERGLEAAPDLLKPGGRLVVISFH 243 (310)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEESS
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEec
Confidence 4457889999999999999998753
No 477
>PRK07340 ornithine cyclodeaminase; Validated
Probab=60.15 E-value=41 Score=25.97 Aligned_cols=101 Identities=12% Similarity=0.049 Sum_probs=53.2
Q ss_pred HHHhcCCCCCCeEEEecCCcCh--HHHHHHhhCCCCeEEEeec-hh-HhhhCCCC--CCceEEEcccCccCCCCCEEEec
Q 030025 13 LEAYKGFEHIKQLVDVGGSLGN--TLKAITSKYPHIKGINFDL-PH-VIQHSPEY--PGVKHVGGDMFQSVPNGDAILIK 86 (184)
Q Consensus 13 ~~~~~~~~~~~~ilDiG~G~G~--~~~~l~~~~~~~~~~~~D~-~~-~~~~a~~~--~~i~~~~~d~~~~~~~~D~i~~~ 86 (184)
.+.+. -....+|+-||||.=. ....++...+..++...+. +. ..+.+.+. .++.+...|..+...++|+|++.
T Consensus 117 ~~~La-~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVita 195 (304)
T PRK07340 117 ARTLA-PAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTA 195 (304)
T ss_pred HHHhC-CCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEc
Confidence 34444 3456899999998432 3333333345456777775 32 22222221 13344333333334455999886
Q ss_pred hhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeecCCC
Q 030025 87 WILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVLPEL 124 (184)
Q Consensus 87 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~ 124 (184)
..-.+ -+|.. .+|||-.+.......++.
T Consensus 196 T~s~~-------Pl~~~---~~~~g~hi~~iGs~~p~~ 223 (304)
T PRK07340 196 TTSRT-------PVYPE---AARAGRLVVAVGAFTPDM 223 (304)
T ss_pred cCCCC-------ceeCc---cCCCCCEEEecCCCCCCc
Confidence 55332 23543 478998777766555543
No 478
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=60.13 E-value=25 Score=28.50 Aligned_cols=52 Identities=21% Similarity=0.222 Sum_probs=36.3
Q ss_pred CCeEEEecCCcChHHHHHHhhC--CCCeEEEeec-hhHhhhCCCC-CCceEEEcccCc
Q 030025 22 IKQLVDVGGSLGNTLKAITSKY--PHIKGINFDL-PHVIQHSPEY-PGVKHVGGDMFQ 75 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~-~~~~~~a~~~-~~i~~~~~d~~~ 75 (184)
..+|+=+|+ |.++..+++.. .+..++.+|. ++.++..++. +++.++.+|..+
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~ 286 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTD 286 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCC
Confidence 577888777 55555555553 3568899988 7766665543 578889999876
No 479
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=59.83 E-value=77 Score=24.29 Aligned_cols=82 Identities=12% Similarity=0.180 Sum_probs=42.9
Q ss_pred eEEEecCCc--ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcccCc---cCCCCCEEEechhhhcCChHHH
Q 030025 24 QLVDVGGSL--GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGDMFQ---SVPNGDAILIKWILHDWSDEHC 97 (184)
Q Consensus 24 ~ilDiG~G~--G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~~~~~D~i~~~~~l~~~~~~~~ 97 (184)
+|-=||+|. +.++..+++. +.++++.|. ++..+...+.. +... .+..+ .....|+|++.- ++...
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~--g~~V~~~dr~~~~~~~l~~~g-~~~~-~s~~~~~~~~~~~dvIi~~v-----p~~~~ 72 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR--GHDCVGYDHDQDAVKAMKEDR-TTGV-ANLRELSQRLSAPRVVWVMV-----PHGIV 72 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcC-Cccc-CCHHHHHhhcCCCCEEEEEc-----CchHH
Confidence 455677764 2233444333 457788887 55554443321 1111 12111 122348887742 33344
Q ss_pred HHHHHHHHhhCCCCcEE
Q 030025 98 LKLLKNCHKSIPEGGKV 114 (184)
Q Consensus 98 ~~~l~~~~~~L~pgG~l 114 (184)
..+++++...|+||-.+
T Consensus 73 ~~v~~~l~~~l~~g~iv 89 (298)
T TIGR00872 73 DAVLEELAPTLEKGDIV 89 (298)
T ss_pred HHHHHHHHhhCCCCCEE
Confidence 57888999999887533
No 480
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=59.59 E-value=25 Score=24.99 Aligned_cols=93 Identities=13% Similarity=0.115 Sum_probs=42.6
Q ss_pred eEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC------CC-----------ceEEE-cccCccCCCCCEEE
Q 030025 24 QLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY------PG-----------VKHVG-GDMFQSVPNGDAIL 84 (184)
Q Consensus 24 ~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~------~~-----------i~~~~-~d~~~~~~~~D~i~ 84 (184)
+|.=+|.|-=.+..+++-...+.+++++|. +..++..++- ++ -.+.. .|.......+|+++
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~~ 81 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVVF 81 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEEE
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceEE
Confidence 566676664333333322234679999998 7655544331 11 11221 22221222347775
Q ss_pred ech-hhhcC----ChHHHHHHHHHHHhhCCCCcEEEE
Q 030025 85 IKW-ILHDW----SDEHCLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 85 ~~~-~l~~~----~~~~~~~~l~~~~~~L~pgG~l~i 116 (184)
++- +-..- .-.....+++.+.+.++++-.+++
T Consensus 82 I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~ 118 (185)
T PF03721_consen 82 ICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVI 118 (185)
T ss_dssp E----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEE
T ss_pred EecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEE
Confidence 532 21110 112234778999999998554444
No 481
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=59.52 E-value=79 Score=24.32 Aligned_cols=94 Identities=12% Similarity=0.127 Sum_probs=53.8
Q ss_pred HhcCCCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEE----cccCc---cCCCCCEEEe
Q 030025 15 AYKGFEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVG----GDMFQ---SVPNGDAILI 85 (184)
Q Consensus 15 ~~~~~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~----~d~~~---~~~~~D~i~~ 85 (184)
.++ ..+..+||=.|+| .|..+..+++.. +.+++.++. ++-++.+++.. +.... .+..+ .....|+++.
T Consensus 158 ~~~-~~~~~~vlV~g~g~iG~~~~~~a~~~-G~~vi~~~~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~d~vi~ 234 (333)
T cd08296 158 NSG-AKPGDLVAVQGIGGLGHLAVQYAAKM-GFRTVAISRGSDKADLARKLG-AHHYIDTSKEDVAEALQELGGAKLILA 234 (333)
T ss_pred hcC-CCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHcC-CcEEecCCCccHHHHHHhcCCCCEEEE
Confidence 344 6677888888854 455555566654 457777776 55555554432 22211 11111 1221277764
Q ss_pred chhhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 86 KWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 86 ~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
. .... ..+....+.|+++|.++....
T Consensus 235 ~-----~g~~---~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 235 T-----APNA---KAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred C-----CCch---HHHHHHHHHcccCCEEEEEec
Confidence 2 1111 357888999999999997654
No 482
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=59.23 E-value=86 Score=24.65 Aligned_cols=91 Identities=20% Similarity=0.101 Sum_probs=49.4
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhH-hhhCCCCCCceEEEc--c---cCccCCCCCEEEechhhh
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHV-IQHSPEYPGVKHVGG--D---MFQSVPNGDAILIKWILH 90 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~-~~~a~~~~~i~~~~~--d---~~~~~~~~D~i~~~~~l~ 90 (184)
..+..+||=.|+| .|..+..+++.. +.+++.++. +.- .+.+++. ++..+.. + +....+..|+++-..
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~~-Ga~~vi~~~~~~~~~~~~~~~D~vid~~--- 255 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINRL-GADSFLVSTDPEKMKAAIGTMDYIIDTV--- 255 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHhC-CCcEEEcCCCHHHHHhhcCCCCEEEECC---
Confidence 4466788888875 556666666665 456776665 322 2232332 2222211 1 011111127666422
Q ss_pred cCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 91 DWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 91 ~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
..+ ..++...+.|++||+++....
T Consensus 256 --g~~---~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 256 --SAV---HALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred --CCH---HHHHHHHHHhcCCcEEEEeCC
Confidence 222 357788899999999997653
No 483
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=58.89 E-value=34 Score=24.70 Aligned_cols=63 Identities=11% Similarity=0.107 Sum_probs=34.2
Q ss_pred CCCeEEEecCCcChH--HHHHHhhCCCCeEEEee--c-hhHhhhCCCCCCceEEEcccCc-cCCCCCEEEec
Q 030025 21 HIKQLVDVGGSLGNT--LKAITSKYPHIKGINFD--L-PHVIQHSPEYPGVKHVGGDMFQ-SVPNGDAILIK 86 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~--~~~l~~~~~~~~~~~~D--~-~~~~~~a~~~~~i~~~~~d~~~-~~~~~D~i~~~ 86 (184)
.+++||=||+|.=.. +..|.+. +.+++.++ . +...+.+.+ ..+.+...++.. .+..+|+|++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~--ga~V~VIs~~~~~~l~~l~~~-~~i~~~~~~~~~~~l~~adlViaa 77 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKY--GAHIVVISPELTENLVKLVEE-GKIRWKQKEFEPSDIVDAFLVIAA 77 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHhC-CCEEEEecCCChhhcCCceEEEEc
Confidence 467999999884433 2334443 35666665 3 233333322 446665555444 45455887773
No 484
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=58.57 E-value=5.2 Score=32.40 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=37.6
Q ss_pred CCCCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC
Q 030025 19 FEHIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY 63 (184)
Q Consensus 19 ~~~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~ 63 (184)
++++..|.|+=||.|.++..++++ .|+++..|+ +++++..+..
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~n 290 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKAN 290 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHh
Confidence 678899999999999999888887 499999999 9998877653
No 485
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=58.03 E-value=60 Score=22.51 Aligned_cols=89 Identities=13% Similarity=0.173 Sum_probs=40.4
Q ss_pred CCCCeEEEecCCcChHH-HHHHhhCCCCeEEEeechhHhhhCCCCCC--ceEEEcccCccCCCCCEEEechhhhcCChHH
Q 030025 20 EHIKQLVDVGGSLGNTL-KAITSKYPHIKGINFDLPHVIQHSPEYPG--VKHVGGDMFQSVPNGDAILIKWILHDWSDEH 96 (184)
Q Consensus 20 ~~~~~ilDiG~G~G~~~-~~l~~~~~~~~~~~~D~~~~~~~a~~~~~--i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~ 96 (184)
...++|+=.|+|+...+ ...+...+..--..+|. .-...-+-.|+ +.++.-+..... ..|.++.....+ .
T Consensus 66 ~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~-np~K~G~~~PGt~ipI~~p~~l~~~-~pd~vivlaw~y----~- 138 (160)
T PF08484_consen 66 AEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDD-NPLKQGKYLPGTHIPIVSPEELKER-KPDYVIVLAWNY----K- 138 (160)
T ss_dssp HTT--EEEE---SHHHHHHHHHT--TTTS--EEES--GGGTTEE-TTT--EEEEGGG--SS---SEEEES-GGG----H-
T ss_pred HcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeC-ChhhcCcccCCCCCeECCHHHHhhC-CCCEEEEcChhh----H-
Confidence 35688999999987665 33333323333445564 12222222254 454544443211 117766533222 1
Q ss_pred HHHHHHHHHhhCCCCcEEEE
Q 030025 97 CLKLLKNCHKSIPEGGKVIV 116 (184)
Q Consensus 97 ~~~~l~~~~~~L~pgG~l~i 116 (184)
.++.+++...++.||++++
T Consensus 139 -~EI~~~~~~~~~~gg~fi~ 157 (160)
T PF08484_consen 139 -DEIIEKLREYLERGGKFIV 157 (160)
T ss_dssp -HHHHHHTHHHHHTT-EEEE
T ss_pred -HHHHHHHHHHHhcCCEEEE
Confidence 2678888888999999987
No 486
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=57.72 E-value=91 Score=24.46 Aligned_cols=94 Identities=12% Similarity=0.151 Sum_probs=53.4
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEEcc-----cCc---c-CCCC-CEEEec
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVGGD-----MFQ---S-VPNG-DAILIK 86 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~~d-----~~~---~-~~~~-D~i~~~ 86 (184)
..+..+||=.|+| .|..+..+++.....+++.++. ++-.+.+++..--.++..+ ..+ . .+.. |+++-.
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~ 264 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFEC 264 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEEEC
Confidence 6678899988865 4455566666654337888886 6666666554211111111 101 1 1112 666542
Q ss_pred hhhhcCChHHHHHHHHHHHhhCCCC-cEEEEEeee
Q 030025 87 WILHDWSDEHCLKLLKNCHKSIPEG-GKVIVVESV 120 (184)
Q Consensus 87 ~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~i~~~~ 120 (184)
.... ..+....+.+++| |++++....
T Consensus 265 -----~G~~---~~~~~~~~~~~~~~g~~v~~g~~ 291 (369)
T cd08301 265 -----TGNI---DAMISAFECVHDGWGVTVLLGVP 291 (369)
T ss_pred -----CCCh---HHHHHHHHHhhcCCCEEEEECcC
Confidence 1222 3577778888996 999886643
No 487
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=57.71 E-value=68 Score=25.19 Aligned_cols=37 Identities=11% Similarity=0.012 Sum_probs=24.7
Q ss_pred CCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 79 NGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 79 ~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
..|+|++.-.- .....+++++...++|+..++....-
T Consensus 77 ~aDlVilavps-----~~~~~vl~~i~~~l~~~~~vIsl~kG 113 (341)
T PRK12439 77 CADVVVMGVPS-----HGFRGVLTELAKELRPWVPVVSLVKG 113 (341)
T ss_pred cCCEEEEEeCH-----HHHHHHHHHHHhhcCCCCEEEEEEeC
Confidence 34877764432 33457899999999988766655443
No 488
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=57.30 E-value=93 Score=24.42 Aligned_cols=92 Identities=14% Similarity=0.141 Sum_probs=52.7
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEE-Ec---ccCc----cCCCC-CEEEech
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHV-GG---DMFQ----SVPNG-DAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~-~~---d~~~----~~~~~-D~i~~~~ 87 (184)
..+..+||-.|+| .|..+..+++......++.++. +.-.+.+++.. +..+ .. +..+ ..+.. |+|+-..
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g-~~~~i~~~~~~~~~~v~~~~~~~~d~vld~~ 262 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELG-ATHVINPKEEDLVAAIREITGGGVDYALDTT 262 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcC-CcEEecCCCcCHHHHHHHHhCCCCcEEEECC
Confidence 5667888888765 3566666666653336888886 55555544432 2211 11 1111 01223 7776421
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
... ..+..+.+.++++|+++....
T Consensus 263 -----g~~---~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 263 -----GVP---AVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred -----CCc---HHHHHHHHHhccCCEEEEeCc
Confidence 111 357888999999999997653
No 489
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=57.12 E-value=53 Score=26.21 Aligned_cols=72 Identities=10% Similarity=0.142 Sum_probs=36.8
Q ss_pred CCeEEEecCCcChHHHHHHhhC--CCCeEEEeechhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHHH
Q 030025 22 IKQLVDVGGSLGNTLKAITSKY--PHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCLK 99 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~~ 99 (184)
..+|.=|| |.|..+..++..+ .+..+++.|.... .+..+...++|+|+.+-... ....
T Consensus 98 ~~~I~IiG-G~GlmG~slA~~l~~~G~~V~~~d~~~~--------------~~~~~~~~~aDlVilavP~~-----~~~~ 157 (374)
T PRK11199 98 LRPVVIVG-GKGQLGRLFAKMLTLSGYQVRILEQDDW--------------DRAEDILADAGMVIVSVPIH-----LTEE 157 (374)
T ss_pred cceEEEEc-CCChhhHHHHHHHHHCCCeEEEeCCCcc--------------hhHHHHHhcCCEEEEeCcHH-----HHHH
Confidence 46788887 3344444444332 2356777774210 01111123348887754433 3456
Q ss_pred HHHHHHhhCCCCcEE
Q 030025 100 LLKNCHKSIPEGGKV 114 (184)
Q Consensus 100 ~l~~~~~~L~pgG~l 114 (184)
+++++.. ++||..+
T Consensus 158 ~~~~l~~-l~~~~iv 171 (374)
T PRK11199 158 VIARLPP-LPEDCIL 171 (374)
T ss_pred HHHHHhC-CCCCcEE
Confidence 7777777 7665433
No 490
>PRK10537 voltage-gated potassium channel; Provisional
Probab=56.87 E-value=43 Score=27.04 Aligned_cols=87 Identities=10% Similarity=-0.008 Sum_probs=47.5
Q ss_pred CCeEEEecCCcChHHHHHHhhC--CCCeEEEeechhHhhhCCCCCCceEEEcccCcc--C-----CCCCEEEechhhhcC
Q 030025 22 IKQLVDVGGSLGNTLKAITSKY--PHIKGINFDLPHVIQHSPEYPGVKHVGGDMFQS--V-----PNGDAILIKWILHDW 92 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~--~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~--~-----~~~D~i~~~~~l~~~ 92 (184)
..+++=+ |.|..+..+++.. .+..++.+|.. ..+.. ...+..++.+|..++ + .+++.+++..
T Consensus 240 k~HvII~--G~g~lg~~v~~~L~~~g~~vvVId~d-~~~~~-~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t----- 310 (393)
T PRK10537 240 KDHFIIC--GHSPLAINTYLGLRQRGQAVTVIVPL-GLEHR-LPDDADLIPGDSSDSAVLKKAGAARARAILALR----- 310 (393)
T ss_pred CCeEEEE--CCChHHHHHHHHHHHCCCCEEEEECc-hhhhh-ccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcC-----
Confidence 3556655 5555666665542 23466777742 11221 225688999999872 2 2236665522
Q ss_pred ChHHHHHHHHHHHhhCCCCcEEEEE
Q 030025 93 SDEHCLKLLKNCHKSIPEGGKVIVV 117 (184)
Q Consensus 93 ~~~~~~~~l~~~~~~L~pgG~l~i~ 117 (184)
++++.-...-...|.+.|+.+++..
T Consensus 311 ~dD~~Nl~ivL~ar~l~p~~kIIa~ 335 (393)
T PRK10537 311 DNDADNAFVVLAAKEMSSDVKTVAA 335 (393)
T ss_pred CChHHHHHHHHHHHHhCCCCcEEEE
Confidence 2222223344556778898888763
No 491
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.79 E-value=71 Score=26.00 Aligned_cols=101 Identities=14% Similarity=0.130 Sum_probs=62.0
Q ss_pred CCCeEEEec-CCcCh------HHHHHHhhCCCCeEEEeec--hhHhhhCCCC---CCceEEEccc-CccC----------
Q 030025 21 HIKQLVDVG-GSLGN------TLKAITSKYPHIKGINFDL--PHVIQHSPEY---PGVKHVGGDM-FQSV---------- 77 (184)
Q Consensus 21 ~~~~ilDiG-~G~G~------~~~~l~~~~~~~~~~~~D~--~~~~~~a~~~---~~i~~~~~d~-~~~~---------- 77 (184)
++..|+=+| =|.|- ++.++.++...+-.++-|. ..+.+..+++ .++.|...-- .+|.
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 446777787 34442 2233333334456677775 4455544443 6777775421 2232
Q ss_pred -CCC-CEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeeec
Q 030025 78 -PNG-DAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESVL 121 (184)
Q Consensus 78 -~~~-D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 121 (184)
.+. |+|++..+--|-.+...-+-+.++.+.++|+-++++.|...
T Consensus 180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasi 225 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASI 225 (483)
T ss_pred HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence 123 99999887777666655566777888899999999988644
No 492
>PRK10083 putative oxidoreductase; Provisional
Probab=56.79 E-value=72 Score=24.51 Aligned_cols=92 Identities=11% Similarity=0.077 Sum_probs=49.2
Q ss_pred CCCCCeEEEecCC-cChHHHHHHhh-CCCCeEEEeec-hhHhhhCCCCCCceEE----EcccCccCC-C--C-CEEEech
Q 030025 19 FEHIKQLVDVGGS-LGNTLKAITSK-YPHIKGINFDL-PHVIQHSPEYPGVKHV----GGDMFQSVP-N--G-DAILIKW 87 (184)
Q Consensus 19 ~~~~~~ilDiG~G-~G~~~~~l~~~-~~~~~~~~~D~-~~~~~~a~~~~~i~~~----~~d~~~~~~-~--~-D~i~~~~ 87 (184)
..+..+||=.|+| .|..+..+++. .....++.++. ++-.+.+++.. ++.. ..+..+... . . |+++-..
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~G-a~~~i~~~~~~~~~~~~~~g~~~d~vid~~ 236 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESG-ADWVINNAQEPLGEALEEKGIKPTLIIDAA 236 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhC-CcEEecCccccHHHHHhcCCCCCCEEEECC
Confidence 6677888888864 33444445553 33335777776 55555544331 2111 111111111 1 1 4554321
Q ss_pred hhhcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 88 ILHDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 88 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
... ..++...+.|+++|+++....
T Consensus 237 -----g~~---~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 237 -----CHP---SILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred -----CCH---HHHHHHHHHhhcCCEEEEEcc
Confidence 112 357888899999999998653
No 493
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=56.31 E-value=37 Score=19.51 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=34.9
Q ss_pred HHHHHHHHhhCCCCcEEEEEeeecCCCCCCCccccchhhhhhHhhhhCCCccccCHHHHHHHHHHcCCceeEEEeecCce
Q 030025 98 LKLLKNCHKSIPEGGKVIVVESVLPELPENGTHSKINSLADVLVMTQYPGGKERTKHEFTTLATEAGFSGIRFVCFFHNL 177 (184)
Q Consensus 98 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~i~~~~~~~~~ 177 (184)
.-.+++..+.|++|..|.+... +. .+..++..++++.|++.+.+....+.+
T Consensus 14 ll~~~~~l~~l~~G~~l~v~~d---~~--------------------------~~~~di~~~~~~~g~~~~~~~~~~~~~ 64 (70)
T PF01206_consen 14 LLKAKKALKELPPGEVLEVLVD---DP--------------------------AAVEDIPRWCEENGYEVVEVEEEGGEY 64 (70)
T ss_dssp HHHHHHHHHTSGTT-EEEEEES---ST--------------------------THHHHHHHHHHHHTEEEEEEEESSSSE
T ss_pred HHHHHHHHHhcCCCCEEEEEEC---Cc--------------------------cHHHHHHHHHHHCCCEEEEEEEeCCEE
Confidence 3457777778888988765321 11 146889999999999988887754443
No 494
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=55.98 E-value=33 Score=26.44 Aligned_cols=89 Identities=16% Similarity=0.153 Sum_probs=55.1
Q ss_pred CCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhC----CC--CCCceEEEcccCccCCCC-----CEEEechhh
Q 030025 22 IKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHS----PE--YPGVKHVGGDMFQSVPNG-----DAILIKWIL 89 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a----~~--~~~i~~~~~d~~~~~~~~-----D~i~~~~~l 89 (184)
++.|+-+| -...++.+++-..-.-++..+|+ .-.+.-- ++ .+|++....|..+|+|+. |+++.
T Consensus 153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiT---- 227 (354)
T COG1568 153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFIT---- 227 (354)
T ss_pred CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeec----
Confidence 36688888 55555555555443347778887 4444322 22 277999999999988753 88877
Q ss_pred hcCChHHHH----HHHHHHHhhCCCC---cEEEEEe
Q 030025 90 HDWSDEHCL----KLLKNCHKSIPEG---GKVIVVE 118 (184)
Q Consensus 90 ~~~~~~~~~----~~l~~~~~~L~pg---G~l~i~~ 118 (184)
.+++.. .++.+=...||.- |++-++-
T Consensus 228 ---DPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 228 ---DPPETIKALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred ---CchhhHHHHHHHHhccHHHhcCCCccceEeeee
Confidence 333333 3445555566665 7776643
No 495
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=55.94 E-value=70 Score=25.01 Aligned_cols=90 Identities=14% Similarity=0.170 Sum_probs=56.1
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCe-EEEeec-hhHhhhCCCCCCceEEEcccCccCCCCCEEEechhhhcCChHHHH
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIK-GINFDL-PHVIQHSPEYPGVKHVGGDMFQSVPNGDAILIKWILHDWSDEHCL 98 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~-~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~~~~D~i~~~~~l~~~~~~~~~ 98 (184)
+.++|.=||||+=..+..+--+-.... ++++-. +..-+.|.+ ++.. ..+..+..+.+|+|... +||+...
T Consensus 17 kgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~-dGf~--V~~v~ea~k~ADvim~L-----~PDe~q~ 88 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKE-DGFK--VYTVEEAAKRADVVMIL-----LPDEQQK 88 (338)
T ss_pred cCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHh-cCCE--eecHHHHhhcCCEEEEe-----CchhhHH
Confidence 467999999999887777766644444 344433 333333332 2332 23333333445888662 3666556
Q ss_pred HHHH-HHHhhCCCCcEEEEEe
Q 030025 99 KLLK-NCHKSIPEGGKVIVVE 118 (184)
Q Consensus 99 ~~l~-~~~~~L~pgG~l~i~~ 118 (184)
++++ ++...|+.|-.|.++.
T Consensus 89 ~vy~~~I~p~Lk~G~aL~FaH 109 (338)
T COG0059 89 EVYEKEIAPNLKEGAALGFAH 109 (338)
T ss_pred HHHHHHhhhhhcCCceEEecc
Confidence 7888 8999999999888754
No 496
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=55.61 E-value=45 Score=29.39 Aligned_cols=95 Identities=19% Similarity=0.184 Sum_probs=56.6
Q ss_pred CCCeEEEecCCcChHHHHHHhhCCCCeEEEeec-hhHhhhCCCC-----------------------CCceEEEcccCcc
Q 030025 21 HIKQLVDVGGSLGNTLKAITSKYPHIKGINFDL-PHVIQHSPEY-----------------------PGVKHVGGDMFQS 76 (184)
Q Consensus 21 ~~~~ilDiG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----------------------~~i~~~~~d~~~~ 76 (184)
+..+|-=||+|+=.......-...+..++..|. ++.++.+.++ .++++. .|+ +.
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~ 411 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDY-SG 411 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH-HH
Confidence 346799999986333333333334788899997 7666654331 123322 222 22
Q ss_pred CCCCCEEEechhhhcCChHHHHHHHHHHHhhCCCCcEEEEEeee
Q 030025 77 VPNGDAILIKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVESV 120 (184)
Q Consensus 77 ~~~~D~i~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 120 (184)
+.++|+|+= .+++.+. -..++|+++-+.++|+..|...+..
T Consensus 412 ~~~aDlViE-Av~E~l~--~K~~vf~~l~~~~~~~~ilasNTSs 452 (737)
T TIGR02441 412 FKNADMVIE-AVFEDLS--LKHKVIKEVEAVVPPHCIIASNTSA 452 (737)
T ss_pred hccCCeehh-hccccHH--HHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 333476654 3555443 3458999999999999887765443
No 497
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=55.11 E-value=96 Score=23.94 Aligned_cols=92 Identities=17% Similarity=0.235 Sum_probs=50.9
Q ss_pred CCCCCeEEEecCCc-ChHHHHHHhhCCCCeEEEeec-hhHhhhCCCCCCceEEE---ccc-------CccCC-CC-CEEE
Q 030025 19 FEHIKQLVDVGGSL-GNTLKAITSKYPHIKGINFDL-PHVIQHSPEYPGVKHVG---GDM-------FQSVP-NG-DAIL 84 (184)
Q Consensus 19 ~~~~~~ilDiG~G~-G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~i~~~~---~d~-------~~~~~-~~-D~i~ 84 (184)
+.+..+||-.|+|. |..+..+++.....+++.++. +...+.+++..--.++. .+. .+..+ .. |+|+
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~vl 239 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPDVVI 239 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCCEEE
Confidence 67788888887764 677777777754322666654 44444433321111111 111 11112 22 8777
Q ss_pred echhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Q 030025 85 IKWILHDWSDEHCLKLLKNCHKSIPEGGKVIVVE 118 (184)
Q Consensus 85 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 118 (184)
-... .. ..+....+.|+++|+++...
T Consensus 240 d~~g-----~~---~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 240 ECTG-----AE---SCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred ECCC-----CH---HHHHHHHHHhhcCCEEEEEc
Confidence 5322 11 25778899999999998754
No 498
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=54.42 E-value=1e+02 Score=23.95 Aligned_cols=89 Identities=7% Similarity=0.044 Sum_probs=48.3
Q ss_pred CeEEEecCC-cC-hHHHHHHhhCCCCeEEEeechhHhhhCCCCCCceEEEccc---------Cc--cCCCCCEEEechhh
Q 030025 23 KQLVDVGGS-LG-NTLKAITSKYPHIKGINFDLPHVIQHSPEYPGVKHVGGDM---------FQ--SVPNGDAILIKWIL 89 (184)
Q Consensus 23 ~~ilDiG~G-~G-~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~i~~~~~d~---------~~--~~~~~D~i~~~~~l 89 (184)
++|+=+|+| .| .++..|++. . ..++.+--+..++..++. ++.....+- .+ ..+..|+|++.-=-
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~-g-~~V~~~~R~~~~~~l~~~-GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa 77 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA-G-HDVTLLVRSRRLEALKKK-GLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKA 77 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-C-CeEEEEecHHHHHHHHhC-CeEEecCCCccccccccccChhhcCCCCEEEEEecc
Confidence 468889988 34 444444444 3 344444334444444443 222222221 11 12233888774332
Q ss_pred hcCChHHHHHHHHHHHhhCCCCcEEEEEee
Q 030025 90 HDWSDEHCLKLLKNCHKSIPEGGKVIVVES 119 (184)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 119 (184)
+ +...+++.+.+.++|...+++.-.
T Consensus 78 ~-----q~~~al~~l~~~~~~~t~vl~lqN 102 (307)
T COG1893 78 Y-----QLEEALPSLAPLLGPNTVVLFLQN 102 (307)
T ss_pred c-----cHHHHHHHhhhcCCCCcEEEEEeC
Confidence 2 234689999999999988877543
No 499
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=54.16 E-value=99 Score=25.25 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=23.1
Q ss_pred CCeEEEecCCcChHHHHHHhhC-CCCeEEEeec-hhHhhhCC
Q 030025 22 IKQLVDVGGSLGNTLKAITSKY-PHIKGINFDL-PHVIQHSP 61 (184)
Q Consensus 22 ~~~ilDiG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~ 61 (184)
..+|-=||- |+.+..++..+ ...+++++|. +..++..+
T Consensus 6 ~mkI~vIGl--GyvGlpmA~~la~~~~V~g~D~~~~~ve~l~ 45 (425)
T PRK15182 6 EVKIAIIGL--GYVGLPLAVEFGKSRQVVGFDVNKKRILELK 45 (425)
T ss_pred CCeEEEECc--CcchHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 356666755 44555454442 2468999998 66665554
No 500
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=53.84 E-value=7.9 Score=26.58 Aligned_cols=58 Identities=14% Similarity=0.015 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCc---C----hHHHHHHhhC---CCCeEEEeec--hhHhhhCCCCCCceE
Q 030025 9 LQKILEAYKGFEHIKQLVDVGGSL---G----NTLKAITSKY---PHIKGINFDL--PHVIQHSPEYPGVKH 68 (184)
Q Consensus 9 ~~~l~~~~~~~~~~~~ilDiG~G~---G----~~~~~l~~~~---~~~~~~~~D~--~~~~~~a~~~~~i~~ 68 (184)
-+.+.+++. +..-.|.|+|+=+ . .++..+++.. +.-+++.+.- -.|.-.|.+.+++..
T Consensus 15 K~~l~~~L~--~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGtGiG~siaANK~~GiRA 84 (148)
T TIGR02133 15 KEALWLDLA--AHEPEVCDVGVYDADDDDDYPCFCIAAAEAVARDAADLGIVIGGSGNGEAIAANKVKGARA 84 (148)
T ss_pred HHHHHHHHH--HCCCEEEECCCCCCCCCCCchHHHHHHHHHHhcCCCceEEEEcCCChhheeeecccCCeEE
Confidence 334444444 3445677777611 1 2333444332 2224444442 234445555566544
Done!