BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030029
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENF 160
+ LGL GASD +IK+AYRR +++YHPDKN +P A + F E I++AY L+DP RE F
Sbjct: 6 YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKE-IAEAYDVLSDPRKREIF 64
Query: 161 EKYGH 165
++YG
Sbjct: 65 DRYGE 69
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Query: 98 FEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISR 157
F+P+ +LG+ AS +DIKKAY++L+ ++HPDKN DP A F++ ISKAY+ L++ R
Sbjct: 17 FDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQ-ISKAYEILSNEEKR 75
Query: 158 ENFEKYG 164
N++ YG
Sbjct: 76 TNYDHYG 82
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 46/65 (70%), Gaps = 2/65 (3%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD-PEANKYFVEYISKAYQALTDPISREN 159
+ +LGL+ A+ DIKK+YR+L+++YHPDKNPD PEA F E I+ A+ LTD R
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKE-INNAHAILTDATKRNI 78
Query: 160 FEKYG 164
++KYG
Sbjct: 79 YDKYG 83
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENF 160
+ ILG+ GASD D+KKAYRRL++++HPDKN P A + F + I AY L++P R+ +
Sbjct: 10 YEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAF-KAIGTAYAVLSNPEKRKQY 68
Query: 161 EKYG 164
+++G
Sbjct: 69 DQFG 72
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 2/67 (2%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNP-DPEANKYFVEYISKAYQALTDPISREN 159
+ ILG+ A + +I+KAY+RL+++YHPD+N D EA F E I +AY+ LTD R
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKE-IKEAYEVLTDSQKRAA 64
Query: 160 FEKYGHP 166
+++YGH
Sbjct: 65 YDQYGHA 71
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 7/68 (10%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVE----YISKAYQALTDPIS 156
+ IL + AS DIKKAYRR ++Q+HPDKNPD NK F E +++AY+ L+D
Sbjct: 5 YEILDVPRSASADDIKKAYRRKALQWHPDKNPD---NKEFAEKKFKEVAEAYEVLSDKHK 61
Query: 157 RENFEKYG 164
RE +++YG
Sbjct: 62 REIYDRYG 69
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 47/66 (71%), Gaps = 3/66 (4%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD--PEANKYFVEYISKAYQALTDPISRE 158
+ +LG++ AS DIKKAYR+L++++HPDKNPD EA K F + +S+AY+ L+D R
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKF-KLVSEAYEVLSDSKKRS 70
Query: 159 NFEKYG 164
+++ G
Sbjct: 71 LYDRAG 76
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 2/67 (2%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKN-PDPEANKYFVEYISKAYQALTDPISREN 159
+ ILG+ A + +I+KAY+RL+++YHPD+N D EA F E I +AY+ LTD R
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKE-IKEAYEVLTDSQKRAA 64
Query: 160 FEKYGHP 166
+++YGH
Sbjct: 65 YDQYGHA 71
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 2/67 (2%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNP-DPEANKYFVEYISKAYQALTDPISREN 159
+ ILG+ A + +I+KAY+RL+++YHPD+N D EA F E I +AY+ LTD R
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKE-IKEAYEVLTDSQKRAA 64
Query: 160 FEKYGHP 166
+++YGH
Sbjct: 65 YDQYGHA 71
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENF 160
+ ILG+ AS+ IKKA+ +L+++YHPDKN P+A F E I++AY+ L+D R+ +
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFRE-IAEAYETLSDANRRKEY 68
Query: 161 EKYGH 165
+ GH
Sbjct: 69 DTLGH 73
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 47/65 (72%), Gaps = 3/65 (4%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENF 160
+ +LG++ A+ ++KKAYR+L+++YHPDKNP+ E K+ + IS+AY+ L+D RE +
Sbjct: 9 YDVLGVKPNATQEELKKAYRKLALKYHPDKNPN-EGEKF--KQISQAYEVLSDAKKRELY 65
Query: 161 EKYGH 165
+K G
Sbjct: 66 DKGGE 70
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 46/65 (70%), Gaps = 3/65 (4%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENF 160
+ +LG++ ASD+++KKAYR++++++HPDKNPD + IS+AY+ L+D R+ +
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQ---FKQISQAYEVLSDEKKRQIY 67
Query: 161 EKYGH 165
++ G
Sbjct: 68 DQGGE 72
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 48/65 (73%), Gaps = 2/65 (3%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNP-DPEANKYFVEYISKAYQALTDPISREN 159
+S+LG+ AS +I++A+++L+++ HPDKNP +P A+ F++ I++AY+ L D R+
Sbjct: 24 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLK-INRAYEVLKDEDLRKK 82
Query: 160 FEKYG 164
++KYG
Sbjct: 83 YDKYG 87
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 48/65 (73%), Gaps = 2/65 (3%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNP-DPEANKYFVEYISKAYQALTDPISREN 159
+S+LG+ AS +I++A+++L+++ HPDKNP +P A+ F++ I++AY+ L D R+
Sbjct: 5 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLK-INRAYEVLKDEDLRKK 63
Query: 160 FEKYG 164
++KYG
Sbjct: 64 YDKYG 68
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNP-DPEANKYFVEYISKAYQALTDPISREN 159
+ ILG+ AS +IKKAY +L+ +YHPD N DP+A + F + +++AY+ L+D + R+
Sbjct: 10 YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQ-LAEAYEVLSDEVKRKQ 68
Query: 160 FEKYG 164
++ YG
Sbjct: 69 YDAYG 73
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 46/66 (69%), Gaps = 3/66 (4%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD--PEANKYFVEYISKAYQALTDPISRE 158
+ +L + AS IKKAYR+L++++HPDKNP+ EA + F + +++AY+ L+D R+
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQ-VAEAYEVLSDAKKRD 70
Query: 159 NFEKYG 164
+++YG
Sbjct: 71 IYDRYG 76
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENF 160
+ +LG+ A++ ++KK YR+ +++YHPDK P + + IS+A++ L DP RE +
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDK---PTGDTEKFKEISEAFEILNDPQKREIY 67
Query: 161 EKYG 164
++YG
Sbjct: 68 DQYG 71
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENF 160
++I+G++ IK AYRRL+ +YHPD + +P+A F E +++A++ L+D R +
Sbjct: 8 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKE-VAEAWEVLSDEQRRAEY 66
Query: 161 EK 162
++
Sbjct: 67 DQ 68
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 93 REMQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDK----NPDPEANKYFVEYISKAY 148
++ Q + + ILG++ A +I KAYR+L++Q+HPD +A K F++ I+ A
Sbjct: 377 KQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFID-IAAAK 435
Query: 149 QALTDPISRENFE 161
+ L+DP R+ F+
Sbjct: 436 EVLSDPEXRKKFD 448
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 92 SREMQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQAL 151
S M++ + ++ILG++ IK AYRRL+ +YHPD + + +A F + +++A++ L
Sbjct: 22 SNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKD-LAEAWEVL 80
Query: 152 TDPISRENFEK 162
D R +++
Sbjct: 81 KDEQRRAEYDQ 91
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 5/65 (7%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD----PEANKYFVEYISKAYQALTDPIS 156
+ ILG++ A +I KAYR+L++Q+HPD + +A K F++ I+ A + L+DP
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFID-IAAAKEVLSDPEM 443
Query: 157 RENFE 161
R+ F+
Sbjct: 444 RKKFD 448
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 99 EPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYIS 145
+ + +LG++ GAS ++ KAYR+L++ HPDK P + F ++
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVN 74
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD-PEANKYFVEYISKAYQALTDPISREN 159
+ +LG+ A+ + IK AY R YHPD+N EA + F IS+AY L R
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTR-ISQAYVVLGSATLRRK 78
Query: 160 FEK 162
+++
Sbjct: 79 YDR 81
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 8/68 (11%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD-------PEANKYFVEYISKAYQALTD 153
+SILG + A+ SD+K+ Y++L + YHPDK E + F+E I +A++ L +
Sbjct: 13 YSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIE-IDQAWKILGN 71
Query: 154 PISRENFE 161
++ ++
Sbjct: 72 EETKREYD 79
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein
Length = 94
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 8/68 (11%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD-------PEANKYFVEYISKAYQALTD 153
+SILG + A+ SD+K+ Y++L + YHPDK E + F+E I +A++ L +
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIE-IDQAWKILGN 77
Query: 154 PISRENFE 161
+++ ++
Sbjct: 78 EETKKKYD 85
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 33.5 bits (75), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 115 IKKAYRRLSIQYHPDKNPDPE----ANKYFVEYISKAYQALTDPISRENFEKY-GHPDGR 169
+ KAYR L+ ++HPD+ + E A + F I+ AY+ L D ++ N++ Y HPD R
Sbjct: 33 LAKAYRALARKHHPDRVKNKEEKLLAEERF-RVIATAYETLKDDEAKTNYDYYLDHPDQR 91
>pdb|1IUR|A Chain A, Dnaj Domain Of Human Kiaa0730 Protein
Length = 88
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 112 DSDIKKAYRRLSIQYHPDKNPDPE--ANKYF 140
+S+ KK RRL +++HPDKNP+ AN+ F
Sbjct: 30 ESERKKIIRRLYLKWHPDKNPENHDIANEVF 60
>pdb|2PF4|E Chain E, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|F Chain F, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|G Chain G, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|H Chain H, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 174
Score = 30.8 bits (68), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 14/82 (17%)
Query: 89 KSTSREMQVFEPFSILGLEHGASDSD--IKKAYRRLSIQYHPDKNPDPEANKYFVEYISK 146
K +RE + + +LGLE A + ++KAY + ++HPDK D E K ++
Sbjct: 3 KVLNRE-ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMK----KMNT 57
Query: 147 AYQALTDPISRENFEKYGH-PD 167
Y+ + D + KY H PD
Sbjct: 58 LYKKMEDGV------KYAHQPD 73
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 113 SDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENF 160
S ++K YR+L Q+HPD + +++AY L DP+ R +
Sbjct: 25 SRLRKEYRQLQAQHHPDM---AQQGSEQSSTLNQAYHTLKDPLRRSQY 69
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 113 SDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENF 160
S ++K YR+L Q+HPD + +++AY L DP+ R +
Sbjct: 33 SRLRKEYRQLQAQHHPDM---AQQGSEQSSTLNQAYHTLKDPLRRSQY 77
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD-PEANKYFVEYISKAYQALTDPISREN 159
+++LG + +S I ++ +++ HPDK+P+ P+A + F + + KA + LT+ SR
Sbjct: 23 YTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETF-QKLQKAKEILTNEESRAR 81
Query: 160 FEKY 163
++ +
Sbjct: 82 YDHW 85
>pdb|1GH6|A Chain A, Retinoblastoma Pocket Complexed With Sv40 Large T Antigen
Length = 114
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 13/70 (18%)
Query: 101 FSILGLEHGASDSD--IKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRE 158
+LGLE A + ++KAY + ++HPDK D E K ++ Y+ + D +
Sbjct: 11 MDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMK----KMNTLYKKMEDGV--- 63
Query: 159 NFEKYGH-PD 167
KY H PD
Sbjct: 64 ---KYAHQPD 70
>pdb|4F99|B Chain B, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|B Chain B, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|D Chain D, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9B|B Chain B, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9B|D Chain D, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9C|B Chain B, Human Cdc7 Kinase In Complex With Dbf4 And Xl413
Length = 144
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 2 AATEENSQLFPIFILTIMALPLVPYTILKLCHAFS 36
E+ SQL+ F L + +P + Y+I K C F
Sbjct: 14 VKVEDMSQLYRPFYLQLTNMPFINYSIQKPCSPFD 48
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 128 PDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGHPDGRQAMD 173
P +N PEA V+ + + L+ + + FE Y +G QA+D
Sbjct: 16 PGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALD 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,836,219
Number of Sequences: 62578
Number of extensions: 170647
Number of successful extensions: 441
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 400
Number of HSP's gapped (non-prelim): 36
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)