Query 030029
Match_columns 184
No_of_seqs 305 out of 1301
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 07:25:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030029.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030029hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0721 Molecular chaperone (D 100.0 1.1E-56 2.3E-61 362.3 13.0 180 1-182 4-183 (230)
2 COG5407 SEC63 Preprotein trans 100.0 6E-39 1.3E-43 281.5 9.4 173 3-183 6-188 (610)
3 COG0484 DnaJ DnaJ-class molecu 99.9 5.8E-25 1.3E-29 191.8 9.6 74 95-169 1-75 (371)
4 KOG0713 Molecular chaperone (D 99.9 4.1E-23 9E-28 176.7 6.7 72 95-167 13-85 (336)
5 PRK14296 chaperone protein Dna 99.8 3.2E-21 7E-26 169.8 7.7 70 96-166 2-71 (372)
6 PRK14288 chaperone protein Dna 99.8 7.2E-21 1.6E-25 167.4 7.9 68 98-166 3-71 (369)
7 KOG0712 Molecular chaperone (D 99.8 3.4E-20 7.4E-25 160.0 7.7 68 97-167 3-70 (337)
8 PRK14287 chaperone protein Dna 99.8 4.3E-20 9.4E-25 162.6 8.2 69 97-166 3-71 (371)
9 PRK14286 chaperone protein Dna 99.8 4.1E-20 8.9E-25 162.8 8.0 70 96-166 2-72 (372)
10 PRK14299 chaperone protein Dna 99.8 1E-19 2.3E-24 155.5 8.6 69 97-166 3-71 (291)
11 PRK14276 chaperone protein Dna 99.8 7.6E-20 1.6E-24 161.5 7.9 69 97-166 3-71 (380)
12 PRK14279 chaperone protein Dna 99.8 6.9E-20 1.5E-24 162.4 7.3 68 97-165 8-76 (392)
13 PRK14283 chaperone protein Dna 99.8 1.1E-19 2.3E-24 160.4 7.7 70 96-166 3-72 (378)
14 PRK14280 chaperone protein Dna 99.8 1.3E-19 2.7E-24 159.9 8.0 70 96-166 2-71 (376)
15 PRK14298 chaperone protein Dna 99.8 1.5E-19 3.2E-24 159.5 7.5 69 97-166 4-72 (377)
16 PTZ00037 DnaJ_C chaperone prot 99.8 1.2E-19 2.7E-24 162.0 7.0 70 93-166 23-92 (421)
17 PRK14282 chaperone protein Dna 99.8 2.1E-19 4.6E-24 158.1 8.3 71 96-167 2-74 (369)
18 PRK14294 chaperone protein Dna 99.8 2.7E-19 5.8E-24 157.3 8.2 70 96-166 2-72 (366)
19 PRK14291 chaperone protein Dna 99.8 2.5E-19 5.4E-24 158.4 7.8 69 98-167 3-71 (382)
20 PRK14278 chaperone protein Dna 99.8 2.7E-19 5.8E-24 157.9 7.7 68 98-166 3-70 (378)
21 PRK14285 chaperone protein Dna 99.8 4.7E-19 1E-23 155.8 7.5 68 98-166 3-71 (365)
22 PRK14277 chaperone protein Dna 99.8 6.9E-19 1.5E-23 155.7 8.1 69 97-166 4-73 (386)
23 KOG0716 Molecular chaperone (D 99.8 2.4E-19 5.2E-24 149.6 4.8 71 96-167 29-100 (279)
24 PRK14297 chaperone protein Dna 99.8 5.7E-19 1.2E-23 155.9 7.4 69 97-166 3-72 (380)
25 PRK14301 chaperone protein Dna 99.8 6.3E-19 1.4E-23 155.4 7.5 69 97-166 3-72 (373)
26 PF00226 DnaJ: DnaJ domain; I 99.8 8.3E-19 1.8E-23 117.3 5.9 62 99-161 1-64 (64)
27 PRK10767 chaperone protein Dna 99.8 1E-18 2.2E-23 153.8 8.1 71 96-167 2-73 (371)
28 PRK14284 chaperone protein Dna 99.8 1.5E-18 3.3E-23 153.8 8.0 67 99-166 2-69 (391)
29 PRK14281 chaperone protein Dna 99.7 2E-18 4.3E-23 153.3 7.4 68 98-166 3-71 (397)
30 PRK14300 chaperone protein Dna 99.7 2.2E-18 4.7E-23 151.9 7.3 68 98-166 3-70 (372)
31 PRK14295 chaperone protein Dna 99.7 2.6E-18 5.5E-23 152.3 7.8 69 97-166 8-81 (389)
32 TIGR02349 DnaJ_bact chaperone 99.7 2.5E-18 5.4E-23 150.4 7.4 68 99-167 1-68 (354)
33 PRK14292 chaperone protein Dna 99.7 3.2E-18 6.9E-23 150.7 7.4 69 98-167 2-70 (371)
34 KOG0715 Molecular chaperone (D 99.7 3.4E-18 7.3E-23 146.1 7.3 72 95-167 40-111 (288)
35 PRK10266 curved DNA-binding pr 99.7 3.5E-18 7.5E-23 147.0 7.4 68 97-165 3-70 (306)
36 PRK14289 chaperone protein Dna 99.7 5.3E-18 1.2E-22 150.0 8.0 69 97-166 4-73 (386)
37 PRK14293 chaperone protein Dna 99.7 4.9E-18 1.1E-22 149.7 7.7 68 98-166 3-70 (374)
38 PRK14290 chaperone protein Dna 99.7 5.5E-18 1.2E-22 149.0 7.4 68 98-166 3-72 (365)
39 KOG0691 Molecular chaperone (D 99.7 5.8E-18 1.3E-22 144.5 7.1 71 97-168 4-75 (296)
40 PTZ00341 Ring-infected erythro 99.7 1.1E-17 2.4E-22 158.8 8.5 73 96-169 571-643 (1136)
41 KOG0718 Molecular chaperone (D 99.7 1.9E-17 4.1E-22 146.8 7.3 82 94-175 5-90 (546)
42 KOG0717 Molecular chaperone (D 99.7 1E-16 2.2E-21 141.9 6.7 68 96-164 6-75 (508)
43 cd06257 DnaJ DnaJ domain or J- 99.7 2.6E-16 5.6E-21 101.7 6.5 54 99-153 1-55 (55)
44 smart00271 DnaJ DnaJ molecular 99.7 2E-16 4.3E-21 104.1 5.9 57 98-155 1-59 (60)
45 KOG0719 Molecular chaperone (D 99.6 2.4E-16 5.2E-21 129.4 6.6 70 97-167 13-85 (264)
46 PHA03102 Small T antigen; Revi 99.6 2.7E-16 5.8E-21 122.8 5.9 69 98-170 5-75 (153)
47 TIGR03835 termin_org_DnaJ term 99.6 7.7E-16 1.7E-20 143.7 8.7 69 98-167 2-70 (871)
48 COG2214 CbpA DnaJ-class molecu 99.6 4.2E-15 9.2E-20 118.2 7.7 67 96-163 4-72 (237)
49 KOG0722 Molecular chaperone (D 99.5 1.4E-14 3.1E-19 120.5 6.7 71 96-167 31-102 (329)
50 PRK01356 hscB co-chaperone Hsc 99.5 1.5E-13 3.2E-18 109.0 9.0 66 98-164 2-73 (166)
51 PRK05014 hscB co-chaperone Hsc 99.5 1E-13 2.3E-18 110.3 7.1 64 98-162 1-72 (171)
52 PRK00294 hscB co-chaperone Hsc 99.4 2.7E-13 5.7E-18 108.1 7.8 68 95-163 1-76 (173)
53 PRK03578 hscB co-chaperone Hsc 99.4 2.8E-13 6.1E-18 108.3 7.5 70 97-166 5-83 (176)
54 PTZ00100 DnaJ chaperone protei 99.4 2.4E-13 5.3E-18 101.5 4.3 60 89-152 56-115 (116)
55 KOG0624 dsRNA-activated protei 99.4 4.6E-13 9.9E-18 116.3 6.3 70 96-166 392-465 (504)
56 KOG0714 Molecular chaperone (D 99.4 3.5E-13 7.7E-18 112.0 5.2 72 97-170 2-75 (306)
57 KOG0720 Molecular chaperone (D 99.4 8.1E-13 1.7E-17 117.4 6.2 70 94-164 231-300 (490)
58 PRK09430 djlA Dna-J like membr 99.3 3.4E-12 7.4E-17 108.1 5.3 57 96-153 198-262 (267)
59 PHA02624 large T antigen; Prov 99.3 7.4E-12 1.6E-16 115.7 6.5 60 97-160 10-71 (647)
60 PRK01773 hscB co-chaperone Hsc 99.2 4.6E-11 1E-15 95.3 7.5 65 98-162 2-73 (173)
61 KOG0550 Molecular chaperone (D 99.1 3.7E-11 8.1E-16 106.1 4.7 66 96-162 371-438 (486)
62 KOG1150 Predicted molecular ch 99.1 1.7E-10 3.7E-15 93.2 6.2 64 96-160 51-116 (250)
63 TIGR00714 hscB Fe-S protein as 99.0 7.1E-10 1.5E-14 87.1 6.9 55 110-165 3-63 (157)
64 COG5269 ZUO1 Ribosome-associat 98.8 3.4E-09 7.4E-14 89.4 5.1 75 88-162 33-112 (379)
65 KOG0568 Molecular chaperone (D 98.6 3.9E-08 8.5E-13 81.4 4.2 59 96-155 45-104 (342)
66 KOG0723 Molecular chaperone (D 98.6 7.7E-08 1.7E-12 70.4 4.7 63 87-153 45-107 (112)
67 KOG1789 Endocytosis protein RM 98.4 3.3E-07 7.1E-12 88.9 5.2 58 93-153 1276-1337(2235)
68 KOG3192 Mitochondrial J-type c 97.5 9.7E-05 2.1E-09 57.8 3.6 67 97-164 7-83 (168)
69 COG1076 DjlA DnaJ-domain-conta 96.5 0.0015 3.3E-08 51.9 2.4 53 98-151 113-173 (174)
70 COG1076 DjlA DnaJ-domain-conta 96.3 0.0038 8.2E-08 49.7 3.1 63 99-162 2-72 (174)
71 PF03656 Pam16: Pam16; InterP 96.2 0.005 1.1E-07 46.9 3.3 59 94-156 54-112 (127)
72 KOG0431 Auxilin-like protein a 94.9 0.023 5.1E-07 51.8 3.4 32 103-134 393-424 (453)
73 PF11833 DUF3353: Protein of u 88.6 0.7 1.5E-05 37.6 4.2 38 107-152 1-38 (194)
74 PF13446 RPT: A repeated domai 85.6 3.4 7.4E-05 26.9 5.5 29 96-124 3-31 (62)
75 KOG0724 Zuotin and related mol 82.1 1.5 3.2E-05 38.1 3.3 52 109-161 3-59 (335)
76 PF12725 DUF3810: Protein of u 81.8 21 0.00046 31.0 10.5 59 96-155 80-150 (318)
77 KOG3442 Uncharacterized conser 71.7 5.3 0.00012 30.3 3.3 67 95-165 56-122 (132)
78 COG2991 Uncharacterized protei 70.7 7.8 0.00017 26.7 3.7 15 41-55 42-57 (77)
79 PF14687 DUF4460: Domain of un 65.7 16 0.00034 27.1 4.8 47 108-154 4-54 (112)
80 COG5552 Uncharacterized conser 56.6 45 0.00098 23.2 5.4 33 98-130 3-35 (88)
81 CHL00185 ycf59 magnesium-proto 56.2 26 0.00057 30.9 5.1 55 75-130 227-282 (351)
82 TIGR02029 AcsF magnesium-proto 53.5 32 0.0007 30.2 5.3 55 75-130 221-276 (337)
83 PF10041 DUF2277: Uncharacteri 49.8 86 0.0019 21.8 5.9 55 99-153 4-61 (78)
84 PF03579 SHP: Small hydrophobi 49.1 25 0.00055 23.2 3.0 21 6-26 10-30 (64)
85 smart00540 LEM in nuclear memb 48.7 17 0.00038 22.4 2.1 24 148-171 3-26 (44)
86 PLN02508 magnesium-protoporphy 47.8 42 0.0009 29.7 5.1 55 75-130 227-282 (357)
87 cd01047 ACSF Aerobic Cyclase S 44.7 65 0.0014 28.2 5.7 55 75-130 211-266 (323)
88 PF03206 NifW: Nitrogen fixati 42.5 1.1E+02 0.0024 22.4 6.0 75 96-170 13-95 (105)
89 PRK13654 magnesium-protoporphy 42.2 48 0.001 29.4 4.6 55 75-130 231-286 (355)
90 TIGR03778 VPDSG_CTERM VPDSG-CT 40.3 31 0.00067 19.0 2.1 18 6-23 3-20 (26)
91 PHA03049 IMV membrane protein; 39.4 64 0.0014 21.8 3.9 47 72-122 6-52 (68)
92 PF09125 COX2-transmemb: Cytoc 39.0 55 0.0012 19.5 3.1 20 10-29 15-34 (38)
93 PF07739 TipAS: TipAS antibiot 38.5 1.1E+02 0.0025 21.5 5.6 52 105-165 51-104 (118)
94 smart00427 H2B Histone H2B. 37.8 58 0.0013 23.2 3.7 39 120-158 8-46 (89)
95 KOG4056 Translocase of outer m 36.4 2E+02 0.0044 22.3 7.3 44 69-123 8-51 (143)
96 PF05478 Prominin: Prominin; 35.9 72 0.0016 31.3 5.3 18 14-31 97-114 (806)
97 PF12955 DUF3844: Domain of un 33.1 58 0.0013 23.9 3.2 30 5-34 63-92 (103)
98 PF05961 Chordopox_A13L: Chord 33.0 78 0.0017 21.4 3.5 23 72-94 6-28 (68)
99 cd01780 PLC_epsilon_RA Ubiquit 32.1 58 0.0013 23.4 3.0 35 96-130 9-43 (93)
100 PF12273 RCR: Chitin synthesis 30.5 35 0.00075 25.5 1.7 6 13-18 4-9 (130)
101 PLN00158 histone H2B; Provisio 29.8 90 0.002 23.4 3.8 38 120-157 34-71 (116)
102 COG0841 AcrB Cation/multidrug 29.2 5E+02 0.011 26.5 10.0 54 71-124 522-579 (1009)
103 PF15176 LRR19-TM: Leucine-ric 29.2 92 0.002 22.8 3.6 29 3-31 9-37 (102)
104 TIGR02736 cbb3_Q_epsi cytochro 28.8 75 0.0016 20.7 2.8 24 11-34 2-25 (56)
105 PTZ00463 histone H2B; Provisio 28.3 1E+02 0.0022 23.1 3.8 35 123-157 38-72 (117)
106 PF01846 FF: FF domain; Inter 25.6 1.6E+02 0.0035 17.7 4.6 47 114-163 1-51 (51)
107 PF12434 Malate_DH: Malate deh 25.5 1E+02 0.0022 17.2 2.5 16 112-127 10-25 (28)
108 COG2879 Uncharacterized small 25.1 1.5E+02 0.0033 19.8 3.8 17 117-133 26-42 (65)
109 PF15128 T_cell_tran_alt: T-ce 24.9 1.3E+02 0.0027 21.5 3.6 21 71-91 27-47 (92)
110 PF10320 7TM_GPCR_Srsx: Serpen 24.9 55 0.0012 27.1 2.2 20 71-90 193-212 (257)
111 PF01542 HCV_core: Hepatitis C 24.7 42 0.00091 22.9 1.1 19 8-26 56-74 (75)
112 PRK00810 nifW nitrogenase stab 24.3 1.5E+02 0.0033 22.0 4.2 73 96-168 17-96 (113)
113 PF03967 PRCH: Photosynthetic 23.8 1.1E+02 0.0023 23.6 3.3 21 71-91 14-34 (136)
114 cd00084 HMG-box High Mobility 23.7 1.9E+02 0.0041 17.8 4.7 40 117-161 13-52 (66)
115 PF12084 DUF3561: Protein of u 23.4 2.8E+02 0.006 20.5 5.2 13 72-84 93-105 (107)
116 cd01388 SOX-TCF_HMG-box SOX-TC 23.0 1.8E+02 0.004 18.9 4.1 40 118-162 15-54 (72)
117 COG4959 TraF Type IV secretory 21.9 45 0.00098 26.4 1.0 14 171-184 116-129 (173)
118 PF13131 DUF3951: Protein of u 21.8 1.2E+02 0.0027 19.4 2.8 35 11-45 6-41 (53)
119 PF02468 PsbN: Photosystem II 21.7 1E+02 0.0022 19.0 2.3 22 15-36 7-28 (43)
120 PF00505 HMG_box: HMG (high mo 20.9 2.3E+02 0.005 17.8 4.3 38 117-159 13-50 (69)
No 1
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-56 Score=362.31 Aligned_cols=180 Identities=44% Similarity=0.734 Sum_probs=164.9
Q ss_pred CCccccCCCchHHHHHHHHhhhHHHHHHHHhccccccccccccccCchhHhhhhhhhhhhhhcccccchhhHHHHHHHHH
Q 030029 1 MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIFKRISNFSTCSNLSLVLLWVI 80 (184)
Q Consensus 1 ~~~~de~g~~f~~F~~t~~~~~lip~T~~~l~~~~~~~~~~~~c~c~~c~~~~~~~~~~~~~~~~~~~~~~~~l~~~w~l 80 (184)
+.+|||+|++|+||++||++++|+|+||+.|++.........+|+|..|++.+++.++..++ .+.+.+++++++||++
T Consensus 4 ~~eYDE~g~tf~yflls~~~~i~~P~Ty~~i~~~~~~~~~~~~c~c~~c~~~r~~~~~~~~k--~~~~~~~i~lv~~W~v 81 (230)
T KOG0721|consen 4 DYEYDESGNTFPYFLLSFLAIILLPMTYLLIPRNPEPPKRKEECQCHGCDKKRRKKAKVSPK--SISTKRKVFLVVGWAV 81 (230)
T ss_pred ccccccccCccHHHHHHHHHHHHHHHHHHHhccccchhhhhhHHhhhhhhhhhhhhcccCcc--cchhHHHHHHHHHHHH
Confidence 46899999999999999999999999999999765556677899999999877665554444 5667889999999999
Q ss_pred HHHHHHHHHhhccccccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHH
Q 030029 81 MIILIYYIKSTSREMQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENF 160 (184)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Y 160 (184)
+++|+|.+..+..+.+.+||||||||++++|.+|||+|||+|++++||||++.++..+++++.|++||+.|+|+..|+||
T Consensus 82 ~~fL~y~i~~~~~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ 161 (230)
T KOG0721|consen 82 IAFLIYKIMNSRRERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENW 161 (230)
T ss_pred HHHHHHHHhhhhHHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999998777777778899999999999999999
Q ss_pred HhcCCCCCCCccccccccCCCC
Q 030029 161 EKYGHPDGRQAMDFKWALLSLS 182 (184)
Q Consensus 161 d~~g~~~g~~~~~~~ialp~~~ 182 (184)
++||||||||++++|||||+|-
T Consensus 162 ekYG~PDGpq~~s~GIALPk~I 183 (230)
T KOG0721|consen 162 EKYGNPDGPQATSFGIALPKWI 183 (230)
T ss_pred HHhCCCCCccchhhHhhhHHHH
Confidence 9999999999999999999994
No 2
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=100.00 E-value=6e-39 Score=281.45 Aligned_cols=173 Identities=33% Similarity=0.568 Sum_probs=148.5
Q ss_pred ccccCCCchHHHHHHHHhhhHHHHHHHHhccc-cccccccccccCchhHhhhh--hhhhhhhhcccccchhhHHHHHHHH
Q 030029 3 ATEENSQLFPIFILTIMALPLVPYTILKLCHA-FSKKIKTIHCQCSDCARSGK--YRKSIFKRISNFSTCSNLSLVLLWV 79 (184)
Q Consensus 3 ~~de~g~~f~~F~~t~~~~~lip~T~~~l~~~-~~~~~~~~~c~c~~c~~~~~--~~~~~~~~~~~~~~~~~~~l~~~w~ 79 (184)
+|||+|.+||||+|+.++++++|+||..+-.. .+++.++..|.|..|..+.+ .|++ ++..|++++++||+
T Consensus 6 eYDE~g~~~p~fvL~gl~~vvlpmTY~~i~gpsaSKe~~~vr~~~q~~Rpkdknv~rKS-------If~lR~If~ivgWl 78 (610)
T COG5407 6 EYDESGLASPYFVLSGLVPVVLPMTYDLIEGPSASKELRRVRCACQGCRPKDKNVSRKS-------IFKLRKIFTIVGWL 78 (610)
T ss_pred ccccccccchHHHHhhhhheeeeeehhheeCCcccchhhcchhhhhhcCccccchhhhH-------HHhhhHHHHHHHHH
Confidence 79999999999999999999999998887543 34567788899998874322 2222 33457899999999
Q ss_pred HHHHHHHHHHhhcccc-ccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------hhHHHHHHHHHHHHHHHcC
Q 030029 80 IMIILIYYIKSTSREM-QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD------PEANKYFVEYISKAYQALT 152 (184)
Q Consensus 80 l~~~l~~~~~~~~~~~-~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~------~~~~~~~~~~I~~AY~~L~ 152 (184)
++++|.+.|.+...+. +.+||||||||+.+++.++||++||+|+.++||||.+. .+..+.+.+ |++||+.|+
T Consensus 79 ~i~~L~~~I~~~k~~~~~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~-ItkAY~~lT 157 (610)
T COG5407 79 VISYLISNIRTLKIEYRRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKT-ITKAYGLLT 157 (610)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHH-HHHHHHhhh
Confidence 9999999999865544 67999999999999999999999999999999999875 245566775 999999999
Q ss_pred ChHHHHHHHhcCCCCCCCccccccccCCCCC
Q 030029 153 DPISRENFEKYGHPDGRQAMDFKWALLSLSS 183 (184)
Q Consensus 153 d~~~R~~Yd~~g~~~g~~~~~~~ialp~~~~ 183 (184)
|+..|+||-.||+||+||..++|||||+|.+
T Consensus 158 d~k~renyl~yGtPd~pQhts~gIAlPk~iv 188 (610)
T COG5407 158 DKKRRENYLNYGTPDSPQHTSEGIALPKVIV 188 (610)
T ss_pred hHHHHHHHHhcCCCCCCccccceeecchhee
Confidence 9999999999999999999999999999953
No 3
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.8e-25 Score=191.77 Aligned_cols=74 Identities=45% Similarity=0.837 Sum_probs=69.2
Q ss_pred cccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCCCC
Q 030029 95 MQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNP-DPEANKYFVEYISKAYQALTDPISRENFEKYGHPDGR 169 (184)
Q Consensus 95 ~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~-~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~g~ 169 (184)
|...|||+||||+++||.+|||+|||+|+++||||+|+ ++++.++|.+ |++||++|+||++|+.||+||+++..
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKE-I~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKE-INEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH-HHHHHHHhCCHHHHHHhhccCccccc
Confidence 34689999999999999999999999999999999999 7888899986 99999999999999999999998754
No 4
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.1e-23 Score=176.75 Aligned_cols=72 Identities=47% Similarity=0.901 Sum_probs=66.7
Q ss_pred cccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCC
Q 030029 95 MQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD-PEANKYFVEYISKAYQALTDPISRENFEKYGHPD 167 (184)
Q Consensus 95 ~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~-~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~ 167 (184)
...+|+|+||||+.+||.+|||+|||+|++++|||||++ +.+.+.|.+ |+.||++|+||++|+.||+||+.+
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~-in~AYEVLsDpekRk~YD~~GEeg 85 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKE-INAAYEVLSDPEKRKHYDTYGEEG 85 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH-HHHHHHHhcCHHHHHHHHhhhHhh
Confidence 456999999999999999999999999999999999995 678888886 999999999999999999999754
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=3.2e-21 Score=169.83 Aligned_cols=70 Identities=37% Similarity=0.720 Sum_probs=65.4
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCC
Q 030029 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGHP 166 (184)
Q Consensus 96 ~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~ 166 (184)
...|||+||||+++||.+|||+|||+|+++||||+|+++++.++|.+ |++||++|+||++|+.||+||+.
T Consensus 2 ~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~-i~~AyevLsD~~KR~~YD~~G~~ 71 (372)
T PRK14296 2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVE-INEAADVLLDKDKRKQYDQFGHA 71 (372)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHH-HHHHHHHhcCHHHhhhhhhccch
Confidence 35799999999999999999999999999999999988778888875 99999999999999999999974
No 6
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=7.2e-21 Score=167.45 Aligned_cols=68 Identities=38% Similarity=0.738 Sum_probs=62.9
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCC
Q 030029 98 FEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNP-DPEANKYFVEYISKAYQALTDPISRENFEKYGHP 166 (184)
Q Consensus 98 ~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~-~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~ 166 (184)
.|||+||||+++||.+|||+|||+|+++||||+++ ++++.++|.+ |++||++|+||++|+.||+||+.
T Consensus 3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~-i~~AYevLsd~~kR~~YD~~G~~ 71 (369)
T PRK14288 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKL-INEAYGVLSDEKKRALYDRYGKK 71 (369)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHH-HHHHHHHhccHHHHHHHHHhccc
Confidence 69999999999999999999999999999999998 4566777865 99999999999999999999975
No 7
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=3.4e-20 Score=160.05 Aligned_cols=68 Identities=50% Similarity=0.899 Sum_probs=63.7
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCC
Q 030029 97 VFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGHPD 167 (184)
Q Consensus 97 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~ 167 (184)
...+|+||||+++||.+|||+|||+|+++||||||++ +.++|.+ |+.||++|+||++|+.||+||+..
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~--~~ekfke-i~~AyevLsd~ekr~~yD~~g~~~ 70 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD--AGEKFKE-ISQAYEVLSDPEKREIYDQYGEEG 70 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc--HHHHHHH-HHHHHHHhcCHHHHHHHHhhhhhh
Confidence 4679999999999999999999999999999999988 6788986 999999999999999999999754
No 8
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=4.3e-20 Score=162.64 Aligned_cols=69 Identities=38% Similarity=0.805 Sum_probs=64.6
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCC
Q 030029 97 VFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGHP 166 (184)
Q Consensus 97 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~ 166 (184)
..|||++|||+++||.+|||+|||+|+++||||+|+++++.++|.+ |++||++|+||.+|+.||+||+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~-i~~Ay~~L~d~~kR~~YD~~G~~ 71 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKE-VKEAYDTLSDPQKKAHYDQFGHT 71 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHH-HHHHHHHhCcHhHHHHHHhhCCc
Confidence 4799999999999999999999999999999999987777788875 99999999999999999999975
No 9
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=4.1e-20 Score=162.83 Aligned_cols=70 Identities=40% Similarity=0.774 Sum_probs=63.9
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCC
Q 030029 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD-PEANKYFVEYISKAYQALTDPISRENFEKYGHP 166 (184)
Q Consensus 96 ~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~-~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~ 166 (184)
...|||+||||+++||.+|||+|||+|+++||||++++ +++.++|.+ |++||++|+||.+|+.||+||+.
T Consensus 2 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~-i~~Ay~vL~d~~kR~~YD~~G~~ 72 (372)
T PRK14286 2 SERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKE-ATEAYEILRDPKKRQAYDQFGKA 72 (372)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHH-HHHHHHHhccHHHHHHHHHhCch
Confidence 34799999999999999999999999999999999974 566777865 99999999999999999999974
No 10
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=1e-19 Score=155.46 Aligned_cols=69 Identities=41% Similarity=0.757 Sum_probs=64.8
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCC
Q 030029 97 VFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGHP 166 (184)
Q Consensus 97 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~ 166 (184)
..|||+||||+++||.+|||+|||+|+++||||+++++++.++|.+ |++||++|+||.+|+.||+||+.
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~-i~~Ay~~L~d~~kr~~yD~~g~~ 71 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKE-INEAYTVLSDPEKRRIYDTYGTT 71 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHH-HHHHHHHhcCHHHHHHHHhcCCc
Confidence 4799999999999999999999999999999999987777788875 99999999999999999999985
No 11
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=7.6e-20 Score=161.53 Aligned_cols=69 Identities=42% Similarity=0.781 Sum_probs=64.8
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCC
Q 030029 97 VFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGHP 166 (184)
Q Consensus 97 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~ 166 (184)
..|||+||||+++||.+|||+|||+|+++||||+++++++.++|.+ |++||++|+||.+|+.||+||+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~-i~~Ay~vL~d~~kR~~YD~~G~~ 71 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKE-VQEAYETLSDPQKRAAYDQYGAA 71 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHH-HHHHHHHhcCHhhhhhHhhcCCc
Confidence 4799999999999999999999999999999999988777788875 99999999999999999999975
No 12
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=6.9e-20 Score=162.41 Aligned_cols=68 Identities=37% Similarity=0.645 Sum_probs=62.5
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHHcCChHHHHHHHhcCC
Q 030029 97 VFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD-PEANKYFVEYISKAYQALTDPISRENFEKYGH 165 (184)
Q Consensus 97 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~-~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~ 165 (184)
..|||+||||+++||.+|||+|||+|+++||||++++ +++.++|.+ |++||++|+||++|+.||+||+
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~-i~~Ay~vLsD~~KR~~YD~~G~ 76 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKA-VSEAHDVLSDPAKRKEYDETRR 76 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHH-HHHHHHHhcchhhhhHHHHhhh
Confidence 4799999999999999999999999999999999984 466677765 9999999999999999999985
No 13
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.1e-19 Score=160.44 Aligned_cols=70 Identities=37% Similarity=0.739 Sum_probs=65.0
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCC
Q 030029 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGHP 166 (184)
Q Consensus 96 ~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~ 166 (184)
...|||++|||+++||.+|||+|||+|+++||||+|+++++.++|.+ |++||++|+||.+|..||+||+.
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~-i~~Ay~~Lsd~~kR~~YD~~G~~ 72 (378)
T PRK14283 3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKE-ISEAYAVLSDDEKRQRYDQFGHA 72 (378)
T ss_pred CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHH-HHHHHHHhchhHHHHHHhhhccc
Confidence 35799999999999999999999999999999999987777788875 99999999999999999999964
No 14
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.3e-19 Score=159.92 Aligned_cols=70 Identities=41% Similarity=0.759 Sum_probs=65.1
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCC
Q 030029 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGHP 166 (184)
Q Consensus 96 ~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~ 166 (184)
...|||+||||+++||.+|||+|||+|+++||||+++++++.++|.+ |++||++|+||.+|+.||+||+.
T Consensus 2 ~~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~-i~~Ay~vL~d~~kr~~yD~~G~~ 71 (376)
T PRK14280 2 AKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKE-ISEAYEVLSDDQKRAQYDQFGHA 71 (376)
T ss_pred CCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHH-HHHHHHHhccHhHHHHHHhcCcc
Confidence 34799999999999999999999999999999999988778888875 99999999999999999999975
No 15
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.5e-19 Score=159.54 Aligned_cols=69 Identities=48% Similarity=0.874 Sum_probs=64.5
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCC
Q 030029 97 VFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGHP 166 (184)
Q Consensus 97 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~ 166 (184)
..|||+||||+++||.+|||+|||+|+++||||+++++++.++|.+ |++||++|+||.+|+.||+||+.
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~-i~~Ay~vL~d~~kR~~YD~~G~~ 72 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKE-ISEAYAVLSDAEKRAQYDRFGHA 72 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHH-HHHHHHHhcchHhhhhhhhcCcc
Confidence 3699999999999999999999999999999999987777788875 99999999999999999999974
No 16
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.79 E-value=1.2e-19 Score=161.98 Aligned_cols=70 Identities=43% Similarity=0.758 Sum_probs=63.1
Q ss_pred cccccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCC
Q 030029 93 REMQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGHP 166 (184)
Q Consensus 93 ~~~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~ 166 (184)
+.+...|+|+||||+++||.+|||+|||+|+++||||++++ .++|.+ |++||++|+||.+|+.||+||..
T Consensus 23 ~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~---~e~F~~-i~~AYevLsD~~kR~~YD~~G~~ 92 (421)
T PTZ00037 23 REVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD---PEKFKE-ISRAYEVLSDPEKRKIYDEYGEE 92 (421)
T ss_pred ccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch---HHHHHH-HHHHHHHhccHHHHHHHhhhcch
Confidence 34456899999999999999999999999999999999874 367865 99999999999999999999975
No 17
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=2.1e-19 Score=158.14 Aligned_cols=71 Identities=37% Similarity=0.762 Sum_probs=63.5
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--hhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCC
Q 030029 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD--PEANKYFVEYISKAYQALTDPISRENFEKYGHPD 167 (184)
Q Consensus 96 ~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~--~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~ 167 (184)
...|||+||||+++||.+|||+|||+|+++||||+++. .++.++|.+ |++||++|+||.+|+.||+||..+
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~-i~~Ay~vL~d~~kR~~YD~~g~~~ 74 (369)
T PRK14282 2 EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKE-IQEAYEVLSDPQKRAMYDRFGYVG 74 (369)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHH-HHHHHHHhcChhhHHHHhhcCccc
Confidence 35799999999999999999999999999999999974 455667764 999999999999999999999743
No 18
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.7e-19 Score=157.32 Aligned_cols=70 Identities=41% Similarity=0.816 Sum_probs=63.6
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCC
Q 030029 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD-PEANKYFVEYISKAYQALTDPISRENFEKYGHP 166 (184)
Q Consensus 96 ~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~-~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~ 166 (184)
...|||+||||+++||.+|||+|||+|+++||||++++ +++.+.|. .|++||++|+||.+|+.||+||+.
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~-~~~~Ay~vL~d~~~r~~yD~~G~~ 72 (366)
T PRK14294 2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFK-EAAEAYEVLSDPKKRGIYDQYGHE 72 (366)
T ss_pred CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHH-HHHHHHHHhccHHHHHHHHhhccc
Confidence 45799999999999999999999999999999999984 55666776 599999999999999999999975
No 19
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.5e-19 Score=158.36 Aligned_cols=69 Identities=46% Similarity=0.850 Sum_probs=64.7
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCC
Q 030029 98 FEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGHPD 167 (184)
Q Consensus 98 ~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~ 167 (184)
.|||+||||+++||.+|||+|||+|+++||||+|+++++.++|.+ |++||++|+||.+|+.||+||+..
T Consensus 3 ~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~-i~~Ay~vLsd~~kR~~YD~~g~~~ 71 (382)
T PRK14291 3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKE-INEAYQVLSDPEKRKLYDQFGHAA 71 (382)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHH-HHHHHHHhcCHHHHHHHhhhcccc
Confidence 699999999999999999999999999999999988777788875 999999999999999999999753
No 20
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.7e-19 Score=157.95 Aligned_cols=68 Identities=46% Similarity=0.762 Sum_probs=63.9
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCC
Q 030029 98 FEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGHP 166 (184)
Q Consensus 98 ~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~ 166 (184)
.|||+||||+++||.+|||+|||+|+++||||+++++++.++|.+ |++||++|+||.+|..||+||++
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~-i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKE-ISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHH-HHHHHHHhchhhhhhhhhccCCc
Confidence 689999999999999999999999999999999998777778875 99999999999999999999974
No 21
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=4.7e-19 Score=155.76 Aligned_cols=68 Identities=46% Similarity=0.847 Sum_probs=62.6
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCC
Q 030029 98 FEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD-PEANKYFVEYISKAYQALTDPISRENFEKYGHP 166 (184)
Q Consensus 98 ~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~-~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~ 166 (184)
.|||++|||+++||.+|||+|||+|+++||||++++ +++.++|.+ |++||++|+||.+|..||+||+.
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~-i~~Ay~vL~d~~kr~~yd~~g~~ 71 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKE-ATEAYEVLIDDNKRAQYDRFGHT 71 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH-HHHHHHHHcCcchhHHHHhcCcc
Confidence 699999999999999999999999999999999975 456677765 99999999999999999999975
No 22
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=6.9e-19 Score=155.72 Aligned_cols=69 Identities=45% Similarity=0.869 Sum_probs=62.8
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCC
Q 030029 97 VFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD-PEANKYFVEYISKAYQALTDPISRENFEKYGHP 166 (184)
Q Consensus 97 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~-~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~ 166 (184)
..|||+||||+++||.+|||+|||+|+++||||++++ +++.++|.+ |++||++|+||.+|+.||+||+.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~-i~~Ay~vL~d~~kr~~yD~~G~~ 73 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKE-INEAYEILSDPQKRAQYDQFGHA 73 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHH-HHHHHHHhCCHHHHHHHHhhccc
Confidence 3699999999999999999999999999999999984 456667765 99999999999999999999964
No 23
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.4e-19 Score=149.64 Aligned_cols=71 Identities=45% Similarity=0.844 Sum_probs=66.1
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCC
Q 030029 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD-PEANKYFVEYISKAYQALTDPISRENFEKYGHPD 167 (184)
Q Consensus 96 ~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~-~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~ 167 (184)
...|.|+||||+++|+.++|||+||+|++++|||++++ +++.+.|.+ ||+||++|+||.+|..||+||.-+
T Consensus 29 ~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~e-IN~Ay~ILsD~~kR~~YD~~g~~~ 100 (279)
T KOG0716|consen 29 IRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKE-INTAYAILSDPTKRNVYDEYGELG 100 (279)
T ss_pred chhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHH-HHHHHHHhcChhhhhhHHHhhhHH
Confidence 46889999999999999999999999999999999987 778888886 999999999999999999998654
No 24
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=5.7e-19 Score=155.92 Aligned_cols=69 Identities=48% Similarity=0.888 Sum_probs=63.2
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCC
Q 030029 97 VFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD-PEANKYFVEYISKAYQALTDPISRENFEKYGHP 166 (184)
Q Consensus 97 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~-~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~ 166 (184)
..|||+||||+++||.+|||+|||+|+++||||++++ +++.++|.+ |++||++|+||.+|+.||+||+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~-i~~Ay~vL~d~~~r~~yD~~G~~ 72 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKE-INEAYQVLSDPQKKAQYDQFGTA 72 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHH-HHHHHHHhcCHhhhCchhhcCcc
Confidence 4699999999999999999999999999999999975 456677765 99999999999999999999975
No 25
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=6.3e-19 Score=155.36 Aligned_cols=69 Identities=45% Similarity=0.901 Sum_probs=63.0
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCC
Q 030029 97 VFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD-PEANKYFVEYISKAYQALTDPISRENFEKYGHP 166 (184)
Q Consensus 97 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~-~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~ 166 (184)
..|||+||||+++||.+|||+|||+|+++||||++++ +++.++|.+ |++||++|+||.+|+.||+||+.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~-i~~Ay~vL~d~~kr~~yD~~g~~ 72 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKE-AAEAYEVLRDAEKRARYDRFGHA 72 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHH-HHHHHHHhcchhhhhhhhhcccc
Confidence 4799999999999999999999999999999999975 456667764 99999999999999999999975
No 26
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.76 E-value=8.3e-19 Score=117.31 Aligned_cols=62 Identities=55% Similarity=0.910 Sum_probs=56.6
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh--HHHHHHHHHHHHHHHcCChHHHHHHH
Q 030029 99 EPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPE--ANKYFVEYISKAYQALTDPISRENFE 161 (184)
Q Consensus 99 d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~--~~~~~~~~I~~AY~~L~d~~~R~~Yd 161 (184)
|+|+||||+++++.++|+++|+++++++|||+++... +.+.|. .|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~-~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFA-RINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHH-HHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHH-HHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999987654 556665 5999999999999999998
No 27
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1e-18 Score=153.79 Aligned_cols=71 Identities=44% Similarity=0.873 Sum_probs=63.6
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCC
Q 030029 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD-PEANKYFVEYISKAYQALTDPISRENFEKYGHPD 167 (184)
Q Consensus 96 ~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~-~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~ 167 (184)
...|||+||||+++||.+|||+|||+|+++||||++++ +++.+.|.+ |++||++|+||.+|..||+||+.+
T Consensus 2 ~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~-i~~Ay~~L~d~~~r~~yd~~g~~~ 73 (371)
T PRK10767 2 AKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKE-IKEAYEVLSDPQKRAAYDQYGHAA 73 (371)
T ss_pred CCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHH-HHHHHHHhcchhhhhHhhhccccc
Confidence 34799999999999999999999999999999999974 456667764 999999999999999999999753
No 28
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.5e-18 Score=153.78 Aligned_cols=67 Identities=48% Similarity=0.895 Sum_probs=61.6
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCC
Q 030029 99 EPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD-PEANKYFVEYISKAYQALTDPISRENFEKYGHP 166 (184)
Q Consensus 99 d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~-~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~ 166 (184)
|||+||||+++||.+|||+|||+|+++||||++++ +++.++|. .|++||++|+||.+|+.||+||+.
T Consensus 2 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~-~i~~Ay~vL~d~~kR~~YD~~G~~ 69 (391)
T PRK14284 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFK-EVSEAYEVLSDAQKRESYDRYGKD 69 (391)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHH-HHHHHHHHhcCHHHHHHHHhcccc
Confidence 89999999999999999999999999999999985 45666776 599999999999999999999974
No 29
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=2e-18 Score=153.35 Aligned_cols=68 Identities=40% Similarity=0.828 Sum_probs=62.4
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCC
Q 030029 98 FEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD-PEANKYFVEYISKAYQALTDPISRENFEKYGHP 166 (184)
Q Consensus 98 ~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~-~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~ 166 (184)
.|||+||||+++||.+|||+|||+|+++||||++++ .++.+.|. .|++||++|+||.+|..||+||+.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~-~i~~Ay~vL~d~~~r~~yD~~g~~ 71 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFK-EVNEAYEVLSNDDKRRRYDQFGHA 71 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHH-HHHHHHHHhhhhhhhhhhhhccch
Confidence 699999999999999999999999999999999985 45567776 599999999999999999999975
No 30
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.2e-18 Score=151.91 Aligned_cols=68 Identities=41% Similarity=0.738 Sum_probs=63.2
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCC
Q 030029 98 FEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGHP 166 (184)
Q Consensus 98 ~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~ 166 (184)
.|||+||||+++||.+|||+|||+++++||||+++++.+.++|.+ |++||++|+||.+|..||+||+.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~-i~~Ay~~L~d~~~r~~yD~~G~~ 70 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKE-INAAYDVLKDEQKRAAYDRFGHD 70 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHH-HHHHHHHhhhHhHhhHHHhcccc
Confidence 699999999999999999999999999999999987667777865 99999999999999999999974
No 31
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.6e-18 Score=152.27 Aligned_cols=69 Identities=38% Similarity=0.742 Sum_probs=62.7
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHHcCChHHHHHHHh----cCCC
Q 030029 97 VFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD-PEANKYFVEYISKAYQALTDPISRENFEK----YGHP 166 (184)
Q Consensus 97 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~-~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~----~g~~ 166 (184)
..|||+||||+++||.+|||+|||+|+++||||++++ +++.++|.+ |++||++|+||.+|+.||+ ||+.
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~-i~~Ay~vL~d~~~r~~yD~~~~~~G~~ 81 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKE-ISEAYDVLSDEKKRKEYDEARSLFGNG 81 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHH-HHHHHHHHCchhhHHHHHHHHhhhccc
Confidence 3699999999999999999999999999999999974 456677765 9999999999999999999 8864
No 32
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.74 E-value=2.5e-18 Score=150.43 Aligned_cols=68 Identities=46% Similarity=0.892 Sum_probs=63.0
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCC
Q 030029 99 EPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGHPD 167 (184)
Q Consensus 99 d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~ 167 (184)
|||+||||+++||.+|||+|||+|+++||||+++++++.++|.+ |++||++|+||.+|..||+||+.+
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~-i~~Ay~vL~d~~~R~~yd~~g~~~ 68 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKE-INEAYEVLSDPEKRAQYDQFGHAG 68 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHH-HHHHHHHhhChHHHHhhhhccccc
Confidence 79999999999999999999999999999999986667778865 999999999999999999999753
No 33
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=3.2e-18 Score=150.69 Aligned_cols=69 Identities=35% Similarity=0.763 Sum_probs=64.3
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCC
Q 030029 98 FEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGHPD 167 (184)
Q Consensus 98 ~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~ 167 (184)
.|||+||||+++||.++||+|||+|++++|||++++.++.++|.+ |++||++|+||.+|+.||+||+.+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~-i~~Ay~vL~d~~~r~~yd~~G~~~ 70 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQ-INEAYAVLSDAEKRAHYDRFGTAP 70 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHH-HHHHHHHhcchhhhhhHhhcCCcc
Confidence 589999999999999999999999999999999988777788865 999999999999999999999753
No 34
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.4e-18 Score=146.05 Aligned_cols=72 Identities=40% Similarity=0.697 Sum_probs=67.0
Q ss_pred cccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCC
Q 030029 95 MQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGHPD 167 (184)
Q Consensus 95 ~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~ 167 (184)
+...|||+||||+++|+..|||+||++|+++||||.|.+.++.+.|.+ |.+||++|+|+++|..||.+|...
T Consensus 40 ~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~e-I~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 40 ISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKE-ISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred CCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHH-HHHHHHHhcCHHHHHHHHHhhhhc
Confidence 344499999999999999999999999999999999999999999987 999999999999999999998753
No 35
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.74 E-value=3.5e-18 Score=147.00 Aligned_cols=68 Identities=31% Similarity=0.623 Sum_probs=63.3
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCC
Q 030029 97 VFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGH 165 (184)
Q Consensus 97 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~ 165 (184)
..|||++|||+++||.+|||+|||+|+++||||+++++++.+.|.+ |++||++|+||.+|..||.||.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~-i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKE-VAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHH-HHHHHHHhhhHHHHHHHHHhhc
Confidence 4699999999999999999999999999999999987777788875 9999999999999999999974
No 36
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=5.3e-18 Score=150.02 Aligned_cols=69 Identities=42% Similarity=0.779 Sum_probs=62.9
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCC
Q 030029 97 VFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD-PEANKYFVEYISKAYQALTDPISRENFEKYGHP 166 (184)
Q Consensus 97 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~-~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~ 166 (184)
..|+|++|||+++||.+|||+|||+|+++||||++++ +++.++|. .|++||++|+||.+|+.||+||+.
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~-~i~~Ay~~L~d~~~R~~yD~~G~~ 73 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFK-EAAEAYDVLSDPDKRSRYDQFGHA 73 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHH-HHHHHHHHhcCHHHHHHHHHhccc
Confidence 4799999999999999999999999999999999974 45667776 599999999999999999999874
No 37
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=4.9e-18 Score=149.73 Aligned_cols=68 Identities=40% Similarity=0.833 Sum_probs=63.8
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCC
Q 030029 98 FEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGHP 166 (184)
Q Consensus 98 ~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~ 166 (184)
.|||+||||+++||.+|||+|||+|++++|||+++++.+.++|.+ |++||++|+||.+|+.||+||+.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~-i~~Ay~vL~~~~~R~~yd~~g~~ 70 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKE-INRAYEVLSDPETRARYDQFGEA 70 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHH-HHHHHHHHhchHHHHHHhhcccc
Confidence 699999999999999999999999999999999987777788864 99999999999999999999975
No 38
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=5.5e-18 Score=148.98 Aligned_cols=68 Identities=41% Similarity=0.733 Sum_probs=62.2
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh--hHHHHHHHHHHHHHHHcCChHHHHHHHhcCCC
Q 030029 98 FEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP--EANKYFVEYISKAYQALTDPISRENFEKYGHP 166 (184)
Q Consensus 98 ~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~--~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~ 166 (184)
.|||+||||+++||.+|||+|||+|++++|||++++. ++.+.|. .|++||++|+||.+|..||+||+.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~-~i~~Ay~~L~d~~~r~~yd~~G~~ 72 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFK-EISEAYEVLSDPQKRRQYDQTGTV 72 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHH-HHHHHHHHhcChhhhhhhcccCCc
Confidence 6999999999999999999999999999999999753 4667776 599999999999999999999975
No 39
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=5.8e-18 Score=144.51 Aligned_cols=71 Identities=44% Similarity=0.799 Sum_probs=65.8
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCCC
Q 030029 97 VFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNP-DPEANKYFVEYISKAYQALTDPISRENFEKYGHPDG 168 (184)
Q Consensus 97 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~-~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~g 168 (184)
..|||+||||++++|..||+++||..++++|||||| +|++.+.|.+ +.+||++|+|+..|..||++|..+-
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~-L~eAy~VL~D~~~R~~YDk~~k~~~ 75 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQE-LSEAYEVLSDEESRAAYDKLRKSGS 75 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHH-HHHHHHHhcCHHHHHHHHHHhhhcc
Confidence 579999999999999999999999999999999998 5788888975 9999999999999999999997553
No 40
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.72 E-value=1.1e-17 Score=158.83 Aligned_cols=73 Identities=27% Similarity=0.388 Sum_probs=66.8
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCCCC
Q 030029 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGHPDGR 169 (184)
Q Consensus 96 ~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~g~ 169 (184)
...++|+||||+++||..+||+|||+|+++||||+++++.+.++|.+ |++||++|+||.+|+.||+||..+.+
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~-I~EAYeVLSDp~kRk~YD~~G~~Gl~ 643 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKK-INEAYQILGDIDKKKMYNKFGYDGIK 643 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHH-HHHHHHHhCCHHHHHHHhhccccccC
Confidence 45799999999999999999999999999999999987777788875 99999999999999999999987544
No 41
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.9e-17 Score=146.77 Aligned_cols=82 Identities=38% Similarity=0.695 Sum_probs=67.5
Q ss_pred ccccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---hHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCCCC-
Q 030029 94 EMQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP---EANKYFVEYISKAYQALTDPISRENFEKYGHPDGR- 169 (184)
Q Consensus 94 ~~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~---~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~g~- 169 (184)
+..+.|+|.+|||+++||.+||++|||++++.|||||..++ +++++.+++|..||++|+||.+|..||.||..+-.
T Consensus 5 e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t 84 (546)
T KOG0718|consen 5 ELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKT 84 (546)
T ss_pred ccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccccc
Confidence 44556999999999999999999999999999999998654 23344334699999999999999999999997655
Q ss_pred Cccccc
Q 030029 170 QAMDFK 175 (184)
Q Consensus 170 ~~~~~~ 175 (184)
++.+++
T Consensus 85 ~gwEl~ 90 (546)
T KOG0718|consen 85 EGWELG 90 (546)
T ss_pred cCceee
Confidence 444443
No 42
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1e-16 Score=141.90 Aligned_cols=68 Identities=44% Similarity=0.768 Sum_probs=61.5
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--hhHHHHHHHHHHHHHHHcCChHHHHHHHhcC
Q 030029 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD--PEANKYFVEYISKAYQALTDPISRENFEKYG 164 (184)
Q Consensus 96 ~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~--~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g 164 (184)
....+|+||||..+|+..+||++||+|+++|||||||+ .++.+.|. .|+.||+||+||..|..||.+.
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~-~i~aAYeVLSdp~eR~wyd~hr 75 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQ-LIQAAYEVLSDPQERAWYDSHR 75 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHH-HHHHHHHHhcChHhhhhHHHHH
Confidence 45789999999999999999999999999999999986 45667786 5999999999999999999864
No 43
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.66 E-value=2.6e-16 Score=101.72 Aligned_cols=54 Identities=57% Similarity=1.023 Sum_probs=49.4
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHHcCC
Q 030029 99 EPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD-PEANKYFVEYISKAYQALTD 153 (184)
Q Consensus 99 d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~-~~~~~~~~~~I~~AY~~L~d 153 (184)
|||++|||++++|.++||++||++++++|||++++ ..+.+.|.+ |++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~-l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKE-INEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHH-HHHHHHHhcC
Confidence 68999999999999999999999999999999987 556677765 9999999987
No 44
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.65 E-value=2e-16 Score=104.11 Aligned_cols=57 Identities=49% Similarity=0.836 Sum_probs=50.8
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC--ChhHHHHHHHHHHHHHHHcCChH
Q 030029 98 FEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNP--DPEANKYFVEYISKAYQALTDPI 155 (184)
Q Consensus 98 ~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~--~~~~~~~~~~~I~~AY~~L~d~~ 155 (184)
.|+|+||||+++++.++||++|+++++++|||+++ .+.+.+.|. .|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~-~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFK-EINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHH-HHHHHHHHHcCCC
Confidence 37999999999999999999999999999999998 455666676 5999999999985
No 45
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.4e-16 Score=129.35 Aligned_cols=70 Identities=39% Similarity=0.696 Sum_probs=63.5
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---hhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCC
Q 030029 97 VFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD---PEANKYFVEYISKAYQALTDPISRENFEKYGHPD 167 (184)
Q Consensus 97 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~---~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~ 167 (184)
..|+|+||||..+|+..+|++||+++++++|||+++. .++.+.|.+ +++||++|+|+++|+.||+-|.-|
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~-l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQ-LQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHH-HHHHHHHhhHHHHHHHHhccCCCC
Confidence 4599999999999999999999999999999999963 346677875 999999999999999999999877
No 46
>PHA03102 Small T antigen; Reviewed
Probab=99.64 E-value=2.7e-16 Score=122.80 Aligned_cols=69 Identities=22% Similarity=0.342 Sum_probs=61.4
Q ss_pred CCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCCCCC
Q 030029 98 FEPFSILGLEHGA--SDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGHPDGRQ 170 (184)
Q Consensus 98 ~d~Y~iLgv~~~a--s~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~g~~ 170 (184)
...|+||||+++| |.++||+|||++++++||||++++ +.|. .|++||++|+|+..|..||.+|..+..+
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~---e~~k-~in~Ay~~L~d~~~r~~yd~~g~~~~~~ 75 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDE---EKMK-ELNTLYKKFRESVKSLRDLDGEEDSSSE 75 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchh---HHHH-HHHHHHHHHhhHHHhccccccCCccccc
Confidence 4679999999999 999999999999999999998754 4565 4999999999999999999999876544
No 47
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.63 E-value=7.7e-16 Score=143.67 Aligned_cols=69 Identities=41% Similarity=0.844 Sum_probs=63.9
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCC
Q 030029 98 FEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGHPD 167 (184)
Q Consensus 98 ~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~ 167 (184)
.|||+||||+++|+.++||++||+|++++|||+++++.+.+.|.+ |++||++|+||.+|..||.||+.+
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqe-INEAYEVLSDP~KRa~YD~fG~aG 70 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAE-INEANDVLSNPKKRANYDKYGHDG 70 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHH-HHHHHHHhCCHHHHHHHhhhcccc
Confidence 589999999999999999999999999999999988767677865 999999999999999999999854
No 48
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=4.2e-15 Score=118.23 Aligned_cols=67 Identities=42% Similarity=0.785 Sum_probs=61.0
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh--HHHHHHHHHHHHHHHcCChHHHHHHHhc
Q 030029 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPE--ANKYFVEYISKAYQALTDPISRENFEKY 163 (184)
Q Consensus 96 ~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~--~~~~~~~~I~~AY~~L~d~~~R~~Yd~~ 163 (184)
...++|+||||+++|+..||+++||++++++|||+++... +.+.|. .|++||++|+|+..|..||++
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~-~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFK-EINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHH-HHHHHHHHhhCHHHHHHhhhh
Confidence 3478999999999999999999999999999999998654 667776 499999999999999999997
No 49
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.4e-14 Score=120.49 Aligned_cols=71 Identities=41% Similarity=0.725 Sum_probs=64.7
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhc-CCCC
Q 030029 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKY-GHPD 167 (184)
Q Consensus 96 ~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~-g~~~ 167 (184)
...|.|++|||+++++..||.+|||+|+++||||++++++..+.|.. |..||++|.|.+.|.+||-+ -+||
T Consensus 31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~-iAtayeilkd~e~rt~ydyaldhpd 102 (329)
T KOG0722|consen 31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVK-IATAYEILKDNETRTQYDYALDHPD 102 (329)
T ss_pred cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhh-hhcccccccchhhHHhHHHHhcCch
Confidence 45899999999999999999999999999999999999888888985 99999999999999999965 3443
No 50
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.48 E-value=1.5e-13 Score=108.95 Aligned_cols=66 Identities=24% Similarity=0.404 Sum_probs=55.4
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCChhHH----HHHHHHHHHHHHHcCChHHHHHHHhcC
Q 030029 98 FEPFSILGLEHG--ASDSDIKKAYRRLSIQYHPDKNPDPEAN----KYFVEYISKAYQALTDPISRENFEKYG 164 (184)
Q Consensus 98 ~d~Y~iLgv~~~--as~~eIkkayr~l~~~~HPDk~~~~~~~----~~~~~~I~~AY~~L~d~~~R~~Yd~~g 164 (184)
.|||++|||+++ ++..+|+++||++++++|||++.+.... +.+. .||+||++|+||.+|..|+.--
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~-~in~AY~~L~dp~~Ra~YlL~l 73 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIAS-ELNNAYSTLKDALKRAEYMLLL 73 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHc
Confidence 589999999997 7899999999999999999998653221 2233 5999999999999999997644
No 51
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.47 E-value=1e-13 Score=110.27 Aligned_cols=64 Identities=28% Similarity=0.505 Sum_probs=54.0
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCChh------HHHHHHHHHHHHHHHcCChHHHHHHHh
Q 030029 98 FEPFSILGLEHG--ASDSDIKKAYRRLSIQYHPDKNPDPE------ANKYFVEYISKAYQALTDPISRENFEK 162 (184)
Q Consensus 98 ~d~Y~iLgv~~~--as~~eIkkayr~l~~~~HPDk~~~~~------~~~~~~~~I~~AY~~L~d~~~R~~Yd~ 162 (184)
.|||++|||+++ ++..+|+++||++++++|||+..+.. +.+.+. .||+||++|+||.+|..|+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~-~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAA-TINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHH-HHHHHHHHHCChhHHHHHHH
Confidence 389999999996 67899999999999999999975422 223444 59999999999999999974
No 52
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.45 E-value=2.7e-13 Score=108.14 Aligned_cols=68 Identities=25% Similarity=0.373 Sum_probs=56.9
Q ss_pred cccCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCChh------HHHHHHHHHHHHHHHcCChHHHHHHHhc
Q 030029 95 MQVFEPFSILGLEHG--ASDSDIKKAYRRLSIQYHPDKNPDPE------ANKYFVEYISKAYQALTDPISRENFEKY 163 (184)
Q Consensus 95 ~~~~d~Y~iLgv~~~--as~~eIkkayr~l~~~~HPDk~~~~~------~~~~~~~~I~~AY~~L~d~~~R~~Yd~~ 163 (184)
|...|||++||++++ .+..+|+++||++++++|||+..+.. +.+.+. .||+||++|+||.+|..|+.-
T Consensus 1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~-~IN~AY~~L~~p~~Ra~YlL~ 76 (173)
T PRK00294 1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSA-SLNEAYQTLKSPPRRARYLLA 76 (173)
T ss_pred CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHH-HHHHHHHHhCChhhhHHHHHH
Confidence 356899999999998 56799999999999999999976422 233454 599999999999999999853
No 53
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.44 E-value=2.8e-13 Score=108.28 Aligned_cols=70 Identities=29% Similarity=0.470 Sum_probs=56.5
Q ss_pred cCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCChhHH-HHH----HHHHHHHHHHcCChHHHHHHHh--cCCC
Q 030029 97 VFEPFSILGLEHG--ASDSDIKKAYRRLSIQYHPDKNPDPEAN-KYF----VEYISKAYQALTDPISRENFEK--YGHP 166 (184)
Q Consensus 97 ~~d~Y~iLgv~~~--as~~eIkkayr~l~~~~HPDk~~~~~~~-~~~----~~~I~~AY~~L~d~~~R~~Yd~--~g~~ 166 (184)
..|||++|||+++ ++..+|+++||++++++|||+.++.... +.+ ...||+||++|+||.+|..|.. .|.+
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G~~ 83 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGVD 83 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcCCC
Confidence 4799999999986 5789999999999999999998642222 111 2459999999999999999984 5553
No 54
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.40 E-value=2.4e-13 Score=101.46 Aligned_cols=60 Identities=25% Similarity=0.335 Sum_probs=50.5
Q ss_pred HhhccccccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcC
Q 030029 89 KSTSREMQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALT 152 (184)
Q Consensus 89 ~~~~~~~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~ 152 (184)
......+...++|+||||++++|.+|||++||++++++|||++++++ .+. .|++||++|.
T Consensus 56 ~~f~~~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~---~~~-kIneAyevL~ 115 (116)
T PTZ00100 56 KGFENPMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTY---IAS-KVNEAKDLLL 115 (116)
T ss_pred ccccCCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHH---HHH-HHHHHHHHHh
Confidence 34455677789999999999999999999999999999999975543 354 4999999985
No 55
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.39 E-value=4.6e-13 Score=116.29 Aligned_cols=70 Identities=39% Similarity=0.674 Sum_probs=62.7
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh----HHHHHHHHHHHHHHHcCChHHHHHHHhcCCC
Q 030029 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPE----ANKYFVEYISKAYQALTDPISRENFEKYGHP 166 (184)
Q Consensus 96 ~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~----~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~ 166 (184)
..+|||.||||.++|+..||.||||+++.+||||...+++ +..+|+. |..|-++|+||++|+.+|.--.|
T Consensus 392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFID-IAAAKEVLsd~EkRrqFDnGeDP 465 (504)
T KOG0624|consen 392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFID-IAAAKEVLSDPEKRRQFDNGEDP 465 (504)
T ss_pred ccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhh-HHHHHHhhcCHHHHhhccCCCCC
Confidence 5689999999999999999999999999999999887654 5567886 99999999999999999986555
No 56
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=3.5e-13 Score=112.05 Aligned_cols=72 Identities=47% Similarity=0.892 Sum_probs=63.3
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh--hHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCCCCC
Q 030029 97 VFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP--EANKYFVEYISKAYQALTDPISRENFEKYGHPDGRQ 170 (184)
Q Consensus 97 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~--~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~g~~ 170 (184)
..|+|.+|||.++|+.++|++|||++++++|||+++.+ .+.++|.+ |.+||++|+|+.+|..||.||. ++..
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~-~~ea~~~ls~~~kr~~~d~~~~-~~~~ 75 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKE-IAEAYEVLSDPKKRKIYDQYGE-EGLK 75 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhh-hhccccccCCHHHhhhccccCc-cccc
Confidence 36899999999999999999999999999999998876 44456765 9999999999999999999998 4444
No 57
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=8.1e-13 Score=117.35 Aligned_cols=70 Identities=33% Similarity=0.621 Sum_probs=64.0
Q ss_pred ccccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcC
Q 030029 94 EMQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYG 164 (184)
Q Consensus 94 ~~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g 164 (184)
+.+..|+|.+|||++++|.++||+.||+++..-|||||-.+.+.|.|. .+..||++|+|+++|..||.-.
T Consensus 231 e~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk-~Lq~Afevig~~~kR~eYd~e~ 300 (490)
T KOG0720|consen 231 ELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFK-KLQVAFEVIGDSVKRKEYDLEL 300 (490)
T ss_pred hhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHH-HHHHHHHHhcchhhhhHHHHHH
Confidence 345789999999999999999999999999999999999888888886 5999999999999999999753
No 58
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.28 E-value=3.4e-12 Score=108.11 Aligned_cols=57 Identities=32% Similarity=0.539 Sum_probs=48.9
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------hhHHHHHHHHHHHHHHHcCC
Q 030029 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD--------PEANKYFVEYISKAYQALTD 153 (184)
Q Consensus 96 ~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~--------~~~~~~~~~~I~~AY~~L~d 153 (184)
...|+|++|||++++|.+|||++||+|+++||||++.+ +.+.++|.+ |++||++|+.
T Consensus 198 ~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~-I~~AYe~L~~ 262 (267)
T PRK09430 198 TLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQE-IQAAYELIKK 262 (267)
T ss_pred cHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHH-HHHHHHHHHH
Confidence 44799999999999999999999999999999999632 235567765 9999999985
No 59
>PHA02624 large T antigen; Provisional
Probab=99.26 E-value=7.4e-12 Score=115.67 Aligned_cols=60 Identities=28% Similarity=0.425 Sum_probs=54.5
Q ss_pred cCCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHH
Q 030029 97 VFEPFSILGLEHGA--SDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENF 160 (184)
Q Consensus 97 ~~d~Y~iLgv~~~a--s~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Y 160 (184)
..++|++|||+++| +.++||+|||++++++|||+++++ +.|. .|++||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGde---ekfk-~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDE---EKMK-RLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcH---HHHH-HHHHHHHHHhcHHHhhhc
Confidence 46899999999999 999999999999999999997653 4575 499999999999999999
No 60
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.20 E-value=4.6e-11 Score=95.29 Aligned_cols=65 Identities=25% Similarity=0.340 Sum_probs=54.2
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCChhH-----HHHHHHHHHHHHHHcCChHHHHHHHh
Q 030029 98 FEPFSILGLEHG--ASDSDIKKAYRRLSIQYHPDKNPDPEA-----NKYFVEYISKAYQALTDPISRENFEK 162 (184)
Q Consensus 98 ~d~Y~iLgv~~~--as~~eIkkayr~l~~~~HPDk~~~~~~-----~~~~~~~I~~AY~~L~d~~~R~~Yd~ 162 (184)
.|||++||+++. .+..+++++||++.+++|||+..+... +......||+||++|+||.+|..|-.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 689999999998 789999999999999999999754321 12233459999999999999999964
No 61
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3.7e-11 Score=106.08 Aligned_cols=66 Identities=44% Similarity=0.748 Sum_probs=59.8
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--hhHHHHHHHHHHHHHHHcCChHHHHHHHh
Q 030029 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD--PEANKYFVEYISKAYQALTDPISRENFEK 162 (184)
Q Consensus 96 ~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~--~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~ 162 (184)
+..|+|.|||++..++..||+++||++++.+|||++.. .++...|.+ +-+||.+|+||.+|..||.
T Consensus 371 kRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFke-vgeAy~il~d~~kr~r~ds 438 (486)
T KOG0550|consen 371 KRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKE-VGEAYTILSDPMKRVRFDS 438 (486)
T ss_pred hhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHH-HHHHHHHhcCHHHHhhccc
Confidence 46799999999999999999999999999999999864 456667876 9999999999999999986
No 62
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.7e-10 Score=93.24 Aligned_cols=64 Identities=45% Similarity=0.748 Sum_probs=55.3
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh-h-HHHHHHHHHHHHHHHcCChHHHHHH
Q 030029 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP-E-ANKYFVEYISKAYQALTDPISRENF 160 (184)
Q Consensus 96 ~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~-~-~~~~~~~~I~~AY~~L~d~~~R~~Y 160 (184)
-+.|||++|.|.|+.+.++||+.||+|+...|||||++. + +...| ..+.+||..|-|+..|..-
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAF-divkKA~k~l~n~~~rkr~ 116 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAF-DIVKKAYKLLENDKIRKRC 116 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHH-HHHHHHHHHHhCHHHHHHH
Confidence 457999999999999999999999999999999999975 3 44445 5699999999999877654
No 63
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.02 E-value=7.1e-10 Score=87.14 Aligned_cols=55 Identities=31% Similarity=0.465 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCChh------HHHHHHHHHHHHHHHcCChHHHHHHHhcCC
Q 030029 110 ASDSDIKKAYRRLSIQYHPDKNPDPE------ANKYFVEYISKAYQALTDPISRENFEKYGH 165 (184)
Q Consensus 110 as~~eIkkayr~l~~~~HPDk~~~~~------~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~ 165 (184)
.+..+|+++||++++++|||+.++.. +.+.+ ..||+||++|+||.+|..|+.--+
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s-~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQS-TTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHH-HHHHHHHHHhCChhhhHHHHHHhc
Confidence 46789999999999999999964321 23445 459999999999999999986544
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=3.4e-09 Score=89.37 Aligned_cols=75 Identities=25% Similarity=0.416 Sum_probs=62.7
Q ss_pred HHhhccccccCCcccccCCCC---CCCHHHHHHHHHHHHHHhCCCCCC--ChhHHHHHHHHHHHHHHHcCChHHHHHHHh
Q 030029 88 IKSTSREMQVFEPFSILGLEH---GASDSDIKKAYRRLSIQYHPDKNP--DPEANKYFVEYISKAYQALTDPISRENFEK 162 (184)
Q Consensus 88 ~~~~~~~~~~~d~Y~iLgv~~---~as~~eIkkayr~l~~~~HPDk~~--~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~ 162 (184)
......+++..|+|.+||++. .++..+|.++.++.+.+||||+.. .......|+..|++||++|+|+..|..||.
T Consensus 33 ~~~d~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS 112 (379)
T COG5269 33 TREDFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDS 112 (379)
T ss_pred HhhhhhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccc
Confidence 456667888899999999985 488999999999999999999962 222334466789999999999999999995
No 65
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=3.9e-08 Score=81.42 Aligned_cols=59 Identities=31% Similarity=0.667 Sum_probs=52.1
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHH-HcCChH
Q 030029 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQ-ALTDPI 155 (184)
Q Consensus 96 ~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~-~L~d~~ 155 (184)
....+|.||||..+++.++++.+|.+|++++|||.+.++..+++|.+ |.+||. +|+..-
T Consensus 45 ~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~q-ideafrkvlq~~~ 104 (342)
T KOG0568|consen 45 KIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQ-IDEAFRKVLQEKF 104 (342)
T ss_pred HHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHH-HHHHHHHHHHHHH
Confidence 44679999999999999999999999999999999888888888986 999999 665433
No 66
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=7.7e-08 Score=70.43 Aligned_cols=63 Identities=29% Similarity=0.376 Sum_probs=53.6
Q ss_pred HHHhhccccccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCC
Q 030029 87 YIKSTSREMQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTD 153 (184)
Q Consensus 87 ~~~~~~~~~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d 153 (184)
+-...+..|+..+.-.||||+++++.+.||+++|+.+..+|||+++++-.+. .||+|+++|..
T Consensus 45 y~GGF~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAs----KINEAKdlLe~ 107 (112)
T KOG0723|consen 45 YKGGFEPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLAS----KINEAKDLLEG 107 (112)
T ss_pred hhcccccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHH----HHHHHHHHHhc
Confidence 3345567788888889999999999999999999999999999999885432 39999999864
No 67
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=3.3e-07 Score=88.86 Aligned_cols=58 Identities=33% Similarity=0.598 Sum_probs=47.6
Q ss_pred cccccCCcccccCCCCC----CCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCC
Q 030029 93 REMQVFEPFSILGLEHG----ASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTD 153 (184)
Q Consensus 93 ~~~~~~d~Y~iLgv~~~----as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d 153 (184)
..|...+.|+||+|+.+ ...+.||++|++|+.+|||||||. ..+.|. .++|||+.|..
T Consensus 1276 ~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE--GRemFe-~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1276 ATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE--GREMFE-RVNKAYELLSS 1337 (2235)
T ss_pred CccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch--HHHHHH-HHHHHHHHHHH
Confidence 45677899999999754 345889999999999999999874 456675 59999999973
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=9.7e-05 Score=57.81 Aligned_cols=67 Identities=30% Similarity=0.516 Sum_probs=51.2
Q ss_pred cCCcccccCCC--CCCCHHHHHHHHHHHHHHhCCCCCCC------hhHHHHHHHHHHHHHHHcCChHHHHHHH--hcC
Q 030029 97 VFEPFSILGLE--HGASDSDIKKAYRRLSIQYHPDKNPD------PEANKYFVEYISKAYQALTDPISRENFE--KYG 164 (184)
Q Consensus 97 ~~d~Y~iLgv~--~~as~~eIkkayr~l~~~~HPDk~~~------~~~~~~~~~~I~~AY~~L~d~~~R~~Yd--~~g 164 (184)
..++|.++|.. ...+++.+..-|...+++.|||+... ..+.+...+ +|+||.+|+||.+|..|- .+|
T Consensus 7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~-lnkAY~TLk~pL~RA~Yilkl~g 83 (168)
T KOG3192|consen 7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAE-LNKAYDTLKDPLARARYLLKLKG 83 (168)
T ss_pred HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHH-HHHHHHHHHhHHHHHHHHHHHhC
Confidence 46789999764 44567777779999999999999532 224444544 999999999999999995 455
No 69
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0015 Score=51.94 Aligned_cols=53 Identities=34% Similarity=0.549 Sum_probs=42.0
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh--------hHHHHHHHHHHHHHHHc
Q 030029 98 FEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP--------EANKYFVEYISKAYQAL 151 (184)
Q Consensus 98 ~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~--------~~~~~~~~~I~~AY~~L 151 (184)
.++|.+||+...++..+|+++||++...+|||+.... ...+++. .|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~-~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQ-EIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHH-HHHHHHHhc
Confidence 6899999999999999999999999999999985321 2334443 377777643
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.0038 Score=49.66 Aligned_cols=63 Identities=30% Similarity=0.521 Sum_probs=47.2
Q ss_pred CcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCChhH------HHHHHHHHHHHHHHcCChHHHHHHHh
Q 030029 99 EPFSILGLEHGA--SDSDIKKAYRRLSIQYHPDKNPDPEA------NKYFVEYISKAYQALTDPISRENFEK 162 (184)
Q Consensus 99 d~Y~iLgv~~~a--s~~eIkkayr~l~~~~HPDk~~~~~~------~~~~~~~I~~AY~~L~d~~~R~~Yd~ 162 (184)
|++...|.++.+ ..+.++..|+.+.+.+|||+....+. .+.+.. ++.||.+|.||..|..|-.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~-~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAE-VNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHH
Confidence 344555655543 45678999999999999999865332 234544 9999999999999999954
No 71
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=96.19 E-value=0.005 Score=46.86 Aligned_cols=59 Identities=22% Similarity=0.253 Sum_probs=39.4
Q ss_pred ccccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHH
Q 030029 94 EMQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPIS 156 (184)
Q Consensus 94 ~~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~ 156 (184)
.|.......||||++..+.++|.++|.+|...++|+++++.-- ...|..|.+.|-.+..
T Consensus 54 ~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYL----QSKV~rAKErl~~El~ 112 (127)
T PF03656_consen 54 GMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFYL----QSKVFRAKERLEQELK 112 (127)
T ss_dssp ---HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHH----HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHH----HHHHHHHHHHHHHHHH
Confidence 4566678899999999999999999999999999999876422 1237777777765543
No 72
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=94.92 E-value=0.023 Score=51.76 Aligned_cols=32 Identities=31% Similarity=0.472 Sum_probs=26.5
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh
Q 030029 103 ILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP 134 (184)
Q Consensus 103 iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~ 134 (184)
=.++..-.+.++||++||+..+..||||.+..
T Consensus 393 pVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~ 424 (453)
T KOG0431|consen 393 PVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQK 424 (453)
T ss_pred cCchhhccCHHHHHHHHHhhhheeCcccccCC
Confidence 34555567999999999999999999998654
No 73
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=88.58 E-value=0.7 Score=37.58 Aligned_cols=38 Identities=37% Similarity=0.425 Sum_probs=29.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcC
Q 030029 107 EHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALT 152 (184)
Q Consensus 107 ~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~ 152 (184)
+++||.+||++|+.++..+|--| +.. .+.|..||+.+.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd----~~~----~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD----EKS----REAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC----HHH----HHHHHHHHHHHH
Confidence 57899999999999999999333 222 245999999874
No 74
>PF13446 RPT: A repeated domain in UCH-protein
Probab=85.57 E-value=3.4 Score=26.87 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=25.9
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHH
Q 030029 96 QVFEPFSILGLEHGASDSDIKKAYRRLSI 124 (184)
Q Consensus 96 ~~~d~Y~iLgv~~~as~~eIkkayr~l~~ 124 (184)
...+.|+.|||+++.+.+.|-.+|+....
T Consensus 3 ~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 3 DVEEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred CHHHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999999999877
No 75
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=82.06 E-value=1.5 Score=38.06 Aligned_cols=52 Identities=29% Similarity=0.440 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCC----h-hHHHHHHHHHHHHHHHcCChHHHHHHH
Q 030029 109 GASDSDIKKAYRRLSIQYHPDKNPD----P-EANKYFVEYISKAYQALTDPISRENFE 161 (184)
Q Consensus 109 ~as~~eIkkayr~l~~~~HPDk~~~----~-~~~~~~~~~I~~AY~~L~d~~~R~~Yd 161 (184)
.++..+++.+|+..+...||++... . ...+.+ ..|.+||++|.+...|...|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~i~ka~~i~~~~~~~~t~~ 59 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEF-KKIEKALAILDDDEPRRTPD 59 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHH-HHHHHHHHHHhccccccchh
Confidence 3567788888999999999987631 1 223334 35889999988755444444
No 76
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=81.82 E-value=21 Score=31.04 Aligned_cols=59 Identities=24% Similarity=0.263 Sum_probs=36.7
Q ss_pred ccCCcccccCCCC-CCCHHHHHHHHHHHHHH-------hCCCCCCC---h-hHHHHHHHHHHHHHHHcCChH
Q 030029 96 QVFEPFSILGLEH-GASDSDIKKAYRRLSIQ-------YHPDKNPD---P-EANKYFVEYISKAYQALTDPI 155 (184)
Q Consensus 96 ~~~d~Y~iLgv~~-~as~~eIkkayr~l~~~-------~HPDk~~~---~-~~~~~~~~~I~~AY~~L~d~~ 155 (184)
...+.++-||++. ..|.+|+.+--+.+..+ .++|.++. + +..+-+ +.+.+||+.|.+..
T Consensus 80 ~R~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~-~~~~~~y~~l~~~~ 150 (318)
T PF12725_consen 80 YRPPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIF-EEAREGYENLAERY 150 (318)
T ss_pred CCcCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHH-HHHHHHHHHHHHhC
Confidence 3456778899987 78888887776665544 33443321 1 123334 45889999887543
No 77
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.69 E-value=5.3 Score=30.31 Aligned_cols=67 Identities=21% Similarity=0.221 Sum_probs=44.2
Q ss_pred cccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCC
Q 030029 95 MQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGH 165 (184)
Q Consensus 95 ~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~ 165 (184)
+.....-+||+|++..+.++|.++|..|-..+.+.|+++---. ..+-.|-+-|..+..++.-.+-|+
T Consensus 56 iTlqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGSFYLQ----SKVfRAkErld~El~~e~~~k~~~ 122 (132)
T KOG3442|consen 56 ITLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSFYLQ----SKVFRAKERLDEELKIELKEKIGN 122 (132)
T ss_pred ccHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcceeeh----HHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3445567899999999999999999999999988877642110 114445555544444443334333
No 78
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.70 E-value=7.8 Score=26.66 Aligned_cols=15 Identities=27% Similarity=0.667 Sum_probs=9.7
Q ss_pred cccccC-chhHhhhhh
Q 030029 41 TIHCQC-SDCARSGKY 55 (184)
Q Consensus 41 ~~~c~c-~~c~~~~~~ 55 (184)
.+.|.| .+|+..+++
T Consensus 42 ~K~CdC~~pCDt~~~k 57 (77)
T COG2991 42 EKVCDCDEPCDTHKKK 57 (77)
T ss_pred chhcCCCCchHHHHHh
Confidence 566888 568765443
No 79
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=65.67 E-value=16 Score=27.08 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCC-h---hHHHHHHHHHHHHHHHcCCh
Q 030029 108 HGASDSDIKKAYRRLSIQYHPDKNPD-P---EANKYFVEYISKAYQALTDP 154 (184)
Q Consensus 108 ~~as~~eIkkayr~l~~~~HPDk~~~-~---~~~~~~~~~I~~AY~~L~d~ 154 (184)
+..+..+++.+.|..-++-|||...+ + +..+...+.++.--+.|..+
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 34577899999999999999997543 2 23344445566666666553
No 80
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=56.63 E-value=45 Score=23.17 Aligned_cols=33 Identities=6% Similarity=0.086 Sum_probs=25.0
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 030029 98 FEPFSILGLEHGASDSDIKKAYRRLSIQYHPDK 130 (184)
Q Consensus 98 ~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk 130 (184)
.|--+++|+++.++..||+.+-++..++..--.
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT 35 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGTT 35 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCC
Confidence 344578899999999999999877776654333
No 81
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=56.21 E-value=26 Score=30.92 Aligned_cols=55 Identities=16% Similarity=0.279 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHhhccccccCCcccccCCCCC-CCHHHHHHHHHHHHHHhCCCC
Q 030029 75 VLLWVIMIILIYYIKSTSREMQVFEPFSILGLEHG-ASDSDIKKAYRRLSIQYHPDK 130 (184)
Q Consensus 75 ~~~w~l~~~l~~~~~~~~~~~~~~d~Y~iLgv~~~-as~~eIkkayr~l~~~~HPDk 130 (184)
--+|+-+.++...+.....+.+..+.|+.||+++. -+.+-|++.- ..+.+.-|-.
T Consensus 227 ~kLW~RFFLlsVfaTmyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tn-~~a~rvFP~~ 282 (351)
T CHL00185 227 ARLWCRFFLLSVFATMYLNDLQRSDFYAAIGLDARQFDMHVIRKTN-ESAARLFPVV 282 (351)
T ss_pred HHHHHHHHHHHHHHHheehhcchHHHHHHhCCCHHHhhHHHHHHhh-HHHHhhCCee
Confidence 44677777777777777778888999999999876 4666666654 4455555654
No 82
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=53.54 E-value=32 Score=30.18 Aligned_cols=55 Identities=20% Similarity=0.218 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHhhccccccCCcccccCCCCC-CCHHHHHHHHHHHHHHhCCCC
Q 030029 75 VLLWVIMIILIYYIKSTSREMQVFEPFSILGLEHG-ASDSDIKKAYRRLSIQYHPDK 130 (184)
Q Consensus 75 ~~~w~l~~~l~~~~~~~~~~~~~~d~Y~iLgv~~~-as~~eIkkayr~l~~~~HPDk 130 (184)
--+|+-+.+|...+.....+.+..+.|+.||+++. -+.+-|++.- ..+.+.-|-.
T Consensus 221 ~kLW~RFFLLsVfaTmyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tn-e~s~rvFP~~ 276 (337)
T TIGR02029 221 AKLWSRFFLLSVYSTMYLRDHQRPGFYEALGLDATDFDLQVFRNTN-ETSGRIFPMT 276 (337)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccHHHHHHhCCCHHHhhHHHHHHhh-HHHHhhCCee
Confidence 34677777777777777777888999999999876 4666666654 4455555654
No 83
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=49.80 E-value=86 Score=21.79 Aligned_cols=55 Identities=22% Similarity=0.201 Sum_probs=35.1
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh---hHHHHHHHHHHHHHHHcCC
Q 030029 99 EPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP---EANKYFVEYISKAYQALTD 153 (184)
Q Consensus 99 d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~---~~~~~~~~~I~~AY~~L~d 153 (184)
|--.+.|+.|.+|.+||+.+=.+..++..--..|+. ++.+.-+..|..+-..|.|
T Consensus 4 nI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~AV~eva~at~~LL~ 61 (78)
T PF10041_consen 4 NIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDRAVAEVAAATRRLLD 61 (78)
T ss_pred chhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 334566888999999999998888888765554433 3333333345555544433
No 84
>PF03579 SHP: Small hydrophobic protein; InterPro: IPR005327 The small hydrophobic integral membrane protein, SH (previously designated 1A) is found to have a variety of glycosylated forms [, ]. This protein is a component of the mature respiratory syncytial virion [] where it may form complexes and appears to play a structural role.; GO: 0016020 membrane, 0016021 integral to membrane, 0048222 glycoprotein network
Probab=49.06 E-value=25 Score=23.15 Aligned_cols=21 Identities=24% Similarity=0.391 Sum_probs=15.1
Q ss_pred cCCCchHHHHHHHHhhhHHHH
Q 030029 6 ENSQLFPIFILTIMALPLVPY 26 (184)
Q Consensus 6 e~g~~f~~F~~t~~~~~lip~ 26 (184)
-+|.+|+||.+.++.+.++-+
T Consensus 10 FtskFW~YFtLi~M~lti~~~ 30 (64)
T PF03579_consen 10 FTSKFWTYFTLIFMMLTIGFF 30 (64)
T ss_pred eccccchHHHHHHHHHHHHHH
Confidence 368899999887766555443
No 85
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=48.67 E-value=17 Score=22.44 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=21.0
Q ss_pred HHHcCChHHHHHHHhcCCCCCCCc
Q 030029 148 YQALTDPISRENFEKYGHPDGRQA 171 (184)
Q Consensus 148 Y~~L~d~~~R~~Yd~~g~~~g~~~ 171 (184)
.+.|+|.+-|+.-.+||.+.||-.
T Consensus 3 ~~~LSd~eL~~~L~~~G~~~gPIt 26 (44)
T smart00540 3 VDRLSDAELRAELKQYGLPPGPIT 26 (44)
T ss_pred hhHcCHHHHHHHHHHcCCCCCCcC
Confidence 357999999999999999999864
No 86
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=47.80 E-value=42 Score=29.72 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHhhccccccCCcccccCCCCC-CCHHHHHHHHHHHHHHhCCCC
Q 030029 75 VLLWVIMIILIYYIKSTSREMQVFEPFSILGLEHG-ASDSDIKKAYRRLSIQYHPDK 130 (184)
Q Consensus 75 ~~~w~l~~~l~~~~~~~~~~~~~~d~Y~iLgv~~~-as~~eIkkayr~l~~~~HPDk 130 (184)
--+|+-+.+|...+.....+.+..+.|+.||+++. -+.+-|++.- ..+.+.-|-.
T Consensus 227 ~kLW~RFFLLsVfaTMyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tn-e~s~rvFP~~ 282 (357)
T PLN02508 227 AKLWSRFFCLSVYVTMYLNDHQRTAFYEGIGLNTKQFNMHVIIETN-RTTARIFPAV 282 (357)
T ss_pred HHHHHHHHHHHHHHHheeeccchHHHHHHhCCCHHHhhHHHHHHhh-HHHHhhCCee
Confidence 45688888888787777788888999999999876 4666666654 4455555654
No 87
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=44.66 E-value=65 Score=28.17 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHhhccccccCCcccccCCCCCC-CHHHHHHHHHHHHHHhCCCC
Q 030029 75 VLLWVIMIILIYYIKSTSREMQVFEPFSILGLEHGA-SDSDIKKAYRRLSIQYHPDK 130 (184)
Q Consensus 75 ~~~w~l~~~l~~~~~~~~~~~~~~d~Y~iLgv~~~a-s~~eIkkayr~l~~~~HPDk 130 (184)
--+|+-+.++...+.....+.+..+.|+.||+++.. +.+-|++.- ..+.+.-|-.
T Consensus 211 ~kLW~RFFLlsVfaTmyl~d~~R~~Fy~alGld~~~yD~~Vi~~Tn-~~s~rvFP~~ 266 (323)
T cd01047 211 NKLWIRFFLLSVYATMYLNDHQRPDFYEALGLDTTEFDMHVIRETN-ETAARVFPAV 266 (323)
T ss_pred HHHHHHHHHHHHHHhheeeccchHHHHHHhCCCHHHhhHHHHHHhh-HHHHhhCCee
Confidence 346888888887777777888889999999998764 566666654 4455555654
No 88
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=42.54 E-value=1.1e+02 Score=22.42 Aligned_cols=75 Identities=13% Similarity=0.236 Sum_probs=51.6
Q ss_pred ccCCcccccCCCCCC-----CHHHHHHHHHHHHHHhCCCCC-CChhHHHHHHHHHHHHHHHc--CChHHHHHHHhcCCCC
Q 030029 96 QVFEPFSILGLEHGA-----SDSDIKKAYRRLSIQYHPDKN-PDPEANKYFVEYISKAYQAL--TDPISRENFEKYGHPD 167 (184)
Q Consensus 96 ~~~d~Y~iLgv~~~a-----s~~eIkkayr~l~~~~HPDk~-~~~~~~~~~~~~I~~AY~~L--~d~~~R~~Yd~~g~~~ 167 (184)
.-.++++.|||+-+. +.=-|=++|......-++... .+.+..+.....+.+||+.. ++|..-+.+--|-...
T Consensus 13 sAEdFf~fF~V~YDp~vv~V~RLHILkrF~~yL~~~~~~~~~~e~~~~~~~R~~L~~AY~dFv~S~p~~ekvFkVf~~~~ 92 (105)
T PF03206_consen 13 SAEDFFDFFGVPYDPKVVNVNRLHILKRFGQYLRAADFAPGLSEEEDWAAYRRALERAYQDFVTSTPLEEKVFKVFKDAA 92 (105)
T ss_pred CHHHHHHHhCCCcchhHHHHhhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhcCChhhhHHHHHHHhcC
Confidence 346789999998763 344577888888888776422 23344455666799999976 6777888887776665
Q ss_pred CCC
Q 030029 168 GRQ 170 (184)
Q Consensus 168 g~~ 170 (184)
++.
T Consensus 93 ~~~ 95 (105)
T PF03206_consen 93 PPR 95 (105)
T ss_pred CCC
Confidence 553
No 89
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=42.16 E-value=48 Score=29.37 Aligned_cols=55 Identities=20% Similarity=0.336 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHhhccccccCCcccccCCCCCC-CHHHHHHHHHHHHHHhCCCC
Q 030029 75 VLLWVIMIILIYYIKSTSREMQVFEPFSILGLEHGA-SDSDIKKAYRRLSIQYHPDK 130 (184)
Q Consensus 75 ~~~w~l~~~l~~~~~~~~~~~~~~d~Y~iLgv~~~a-s~~eIkkayr~l~~~~HPDk 130 (184)
--+|+-+.+|...+.....+.+..+.|+.||+++.. +.+-|++. -..+.+.-|-.
T Consensus 231 ~kLW~RFFLlsVfaTmyl~d~~R~~Fy~alGlD~~~yD~~Vi~~T-ne~s~rvFP~~ 286 (355)
T PRK13654 231 NRLWIRFFLLAVFATMYLRDHERPDFYEALGLDAREYDQEVIRKT-NETSARVFPVV 286 (355)
T ss_pred HHHHHHHHHHHHHhheeeecccchHHHHHhCCCHHHhhHHHHHHh-hHHHHhhCCee
Confidence 346888888887777777888889999999998764 55556665 44555555654
No 90
>TIGR03778 VPDSG_CTERM VPDSG-CTERM exosortase interaction domain. Through in silico analysis, we previously described the PEP-CTERM/exosortase system (PubMed:16930487). This model describes a PEP-CTERM-like variant C-terminal protein sorting signal, as found at the C-terminus of twenty otherwise unrelated proteins in Verrucomicrobiae bacterium DG1235. The variant motif, VPDSG, seems an intermediate between the VPEP motif (TIGR02595) of typical exosortase systems and the classical LPXTG of sortase in Gram-positive bacteria.
Probab=40.29 E-value=31 Score=18.99 Aligned_cols=18 Identities=11% Similarity=0.220 Sum_probs=12.4
Q ss_pred cCCCchHHHHHHHHhhhH
Q 030029 6 ENSQLFPIFILTIMALPL 23 (184)
Q Consensus 6 e~g~~f~~F~~t~~~~~l 23 (184)
++|+++.-+.+++++++.
T Consensus 3 DsGST~~Ll~~~l~~l~~ 20 (26)
T TIGR03778 3 DSGSTLALLGLGLLGLLG 20 (26)
T ss_pred CchhHHHHHHHHHHHHHH
Confidence 578888777777665544
No 91
>PHA03049 IMV membrane protein; Provisional
Probab=39.39 E-value=64 Score=21.80 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccCCcccccCCCCCCCHHHHHHHHHHH
Q 030029 72 LSLVLLWVIMIILIYYIKSTSREMQVFEPFSILGLEHGASDSDIKKAYRRL 122 (184)
Q Consensus 72 ~~l~~~w~l~~~l~~~~~~~~~~~~~~d~Y~iLgv~~~as~~eIkkayr~l 122 (184)
+++++.-+++++++|-+.....+.+..+|- ....-..+++|..|+.-
T Consensus 6 ~l~iICVaIi~lIvYgiYnkk~~~q~~~p~----~e~ye~~e~~kT~yvD~ 52 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNKKTTTSQNPPS----QEKYEKMEDLKTGYVDK 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCC----hhhccCchhhhhhHHhh
Confidence 445555666667777766554433322221 01112345666776653
No 92
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=38.97 E-value=55 Score=19.52 Aligned_cols=20 Identities=10% Similarity=0.089 Sum_probs=14.7
Q ss_pred chHHHHHHHHhhhHHHHHHH
Q 030029 10 LFPIFILTIMALPLVPYTIL 29 (184)
Q Consensus 10 ~f~~F~~t~~~~~lip~T~~ 29 (184)
-|..|.++++.++++..-|.
T Consensus 15 ~Wi~F~l~mi~vFi~li~yt 34 (38)
T PF09125_consen 15 GWIAFALAMILVFIALIGYT 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 37889999888777765544
No 93
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=38.51 E-value=1.1e+02 Score=21.53 Aligned_cols=52 Identities=21% Similarity=0.468 Sum_probs=33.2
Q ss_pred CCCCCC-CHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHH-hcCC
Q 030029 105 GLEHGA-SDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFE-KYGH 165 (184)
Q Consensus 105 gv~~~a-s~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd-~~g~ 165 (184)
|++|+. ...++-+.++.++..+++ .+++ .+. .+.+.| +.||.-+..|| .++.
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~---~~~~---~~~-~l~~~y--~~~~~~~~~~~~~~~~ 104 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTG---GDPE---LLR-GLAQMY--VEDPRFAAMYDKKFGP 104 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS------HH---HHH-HHHHHT--TSTHHHHHHHG-GGST
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhC---CCHH---HHH-HHHHHH--HcCHHHHhhccccCCH
Confidence 555554 345677888888888877 2222 233 478887 78999999999 7765
No 94
>smart00427 H2B Histone H2B.
Probab=37.82 E-value=58 Score=23.25 Aligned_cols=39 Identities=15% Similarity=0.313 Sum_probs=23.7
Q ss_pred HHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHH
Q 030029 120 RRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRE 158 (184)
Q Consensus 120 r~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~ 158 (184)
.+..++.|||..-...+.......++.-++-+.++..|-
T Consensus 8 ~kvLKqVhpd~giS~kam~imnSfvnDiferIa~EAs~L 46 (89)
T smart00427 8 YKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASKL 46 (89)
T ss_pred HHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999997665554333333555666665555443
No 95
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.37 E-value=2e+02 Score=22.27 Aligned_cols=44 Identities=5% Similarity=0.000 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhccccccCCcccccCCCCCCCHHHHHHHHHHHH
Q 030029 69 CSNLSLVLLWVIMIILIYYIKSTSREMQVFEPFSILGLEHGASDSDIKKAYRRLS 123 (184)
Q Consensus 69 ~~~~~l~~~w~l~~~l~~~~~~~~~~~~~~d~Y~iLgv~~~as~~eIkkayr~l~ 123 (184)
.+.+.++.+....+++.|.+.......+..| ..+.+++++++.+
T Consensus 8 ~~~~vI~agiag~af~gYciYFd~KRrsdP~-----------fk~~lr~rrk~q~ 51 (143)
T KOG4056|consen 8 LRTSVIAAGIAGLAFIGYCIYFDKKRRSDPD-----------FKKKLRERRKKQA 51 (143)
T ss_pred hhhHHHHHHHHHHHHHHHHhhcccccccChh-----------HHHHHHHHHHHHh
Confidence 3467788888888999999876644333222 3456777777754
No 96
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=35.89 E-value=72 Score=31.29 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=11.1
Q ss_pred HHHHHHhhhHHHHHHHHh
Q 030029 14 FILTIMALPLVPYTILKL 31 (184)
Q Consensus 14 F~~t~~~~~lip~T~~~l 31 (184)
.+++++.++++|++-..+
T Consensus 97 ~~i~ll~~il~P~vg~~f 114 (806)
T PF05478_consen 97 AVIGLLFIILMPLVGLCF 114 (806)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345666667778765544
No 97
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=33.12 E-value=58 Score=23.86 Aligned_cols=30 Identities=20% Similarity=0.108 Sum_probs=23.9
Q ss_pred ccCCCchHHHHHHHHhhhHHHHHHHHhccc
Q 030029 5 EENSQLFPIFILTIMALPLVPYTILKLCHA 34 (184)
Q Consensus 5 de~g~~f~~F~~t~~~~~lip~T~~~l~~~ 34 (184)
|=|.++|.++..|+++++++-+.+.+|+..
T Consensus 63 DvS~~F~L~~~~ti~lv~~~~~~I~lL~sv 92 (103)
T PF12955_consen 63 DVSVPFWLFAGFTIALVVLVAGAIGLLFSV 92 (103)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 567788888888888888888888888743
No 98
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=33.02 E-value=78 Score=21.45 Aligned_cols=23 Identities=13% Similarity=0.362 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc
Q 030029 72 LSLVLLWVIMIILIYYIKSTSRE 94 (184)
Q Consensus 72 ~~l~~~w~l~~~l~~~~~~~~~~ 94 (184)
+++++.-++++.++|-+....+.
T Consensus 6 iLi~ICVaii~lIlY~iYnr~~~ 28 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRKKT 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 44555556666666766554443
No 99
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=32.06 E-value=58 Score=23.45 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=25.3
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 030029 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDK 130 (184)
Q Consensus 96 ~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk 130 (184)
....||.||-++...|..+|-+.=-..+++.|||-
T Consensus 9 s~dqP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~ 43 (93)
T cd01780 9 SPDQPYAILRAPRVSTAQDVIQQTLCKARRSNPNP 43 (93)
T ss_pred CCCCCeeEEEccccccHHHHHHHHHHHhccCCCCc
Confidence 45789999999999888876555444455557774
No 100
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=30.51 E-value=35 Score=25.48 Aligned_cols=6 Identities=33% Similarity=0.844 Sum_probs=2.3
Q ss_pred HHHHHH
Q 030029 13 IFILTI 18 (184)
Q Consensus 13 ~F~~t~ 18 (184)
+|++.+
T Consensus 4 l~~iii 9 (130)
T PF12273_consen 4 LFAIII 9 (130)
T ss_pred eHHHHH
Confidence 343333
No 101
>PLN00158 histone H2B; Provisional
Probab=29.78 E-value=90 Score=23.38 Aligned_cols=38 Identities=16% Similarity=0.343 Sum_probs=18.4
Q ss_pred HHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHH
Q 030029 120 RRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISR 157 (184)
Q Consensus 120 r~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R 157 (184)
.+..++.|||.+-...+.......++.-++-|..+..|
T Consensus 34 ~kVLKQVhPd~gIS~kaM~ImnSfvnDiferIA~EAs~ 71 (116)
T PLN00158 34 YKVLKQVHPDTGISSKAMSIMNSFINDIFEKIATEAGK 71 (116)
T ss_pred HHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777655443333322344555555444443
No 102
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=29.19 E-value=5e+02 Score=26.49 Aligned_cols=54 Identities=19% Similarity=0.147 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccc----ccCCcccccCCCCCCCHHHHHHHHHHHHH
Q 030029 71 NLSLVLLWVIMIILIYYIKSTSREM----QVFEPFSILGLEHGASDSDIKKAYRRLSI 124 (184)
Q Consensus 71 ~~~l~~~w~l~~~l~~~~~~~~~~~----~~~d~Y~iLgv~~~as~~eIkkayr~l~~ 124 (184)
.+.+++..++++..++.......+. ..-...-.+..++++|.++..+.-++...
T Consensus 522 ~~~~~~~l~~~~~~~~l~~~vp~~F~P~eD~g~~~v~~~~p~g~sl~~t~~~~~~ve~ 579 (1009)
T COG0841 522 ALVLLLYLVLLGGSVLLFLKLPKSFLPEEDQGEFMVQVQLPEGASLERTAEVVRQVED 579 (1009)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccCCcCCCCEEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3334444444444444444443332 12223345567899998887777666665
No 103
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=29.19 E-value=92 Score=22.77 Aligned_cols=29 Identities=10% Similarity=0.217 Sum_probs=19.3
Q ss_pred ccccCCCchHHHHHHHHhhhHHHHHHHHh
Q 030029 3 ATEENSQLFPIFILTIMALPLVPYTILKL 31 (184)
Q Consensus 3 ~~de~g~~f~~F~~t~~~~~lip~T~~~l 31 (184)
...++|..|+|.+..+++.+++-+.+.+.
T Consensus 9 ~~~~~g~sW~~LVGVv~~al~~SlLIala 37 (102)
T PF15176_consen 9 GPGEGGRSWPFLVGVVVTALVTSLLIALA 37 (102)
T ss_pred CCCCCCcccHhHHHHHHHHHHHHHHHHHH
Confidence 34677999998877666665555555443
No 104
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=28.84 E-value=75 Score=20.70 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=14.9
Q ss_pred hHHHHHHHHhhhHHHHHHHHhccc
Q 030029 11 FPIFILTIMALPLVPYTILKLCHA 34 (184)
Q Consensus 11 f~~F~~t~~~~~lip~T~~~l~~~ 34 (184)
+.||+++++.++++---++-|++.
T Consensus 2 y~yf~~ti~lvv~LYgY~yhLYrs 25 (56)
T TIGR02736 2 YAYFAFTLLLVIFLYAYIYHLYRS 25 (56)
T ss_pred cchHHHHHHHHHHHHHHHHHhhhh
Confidence 346777776666665555667654
No 105
>PTZ00463 histone H2B; Provisional
Probab=28.27 E-value=1e+02 Score=23.15 Aligned_cols=35 Identities=17% Similarity=0.348 Sum_probs=15.7
Q ss_pred HHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHH
Q 030029 123 SIQYHPDKNPDPEANKYFVEYISKAYQALTDPISR 157 (184)
Q Consensus 123 ~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R 157 (184)
.++.|||.+-...+.......++.-++-|..+..+
T Consensus 38 LKqVhPd~gIS~kaM~ImnSfvnDifErIA~EAs~ 72 (117)
T PTZ00463 38 LKQVHPDTGISRKSMNIMNSFLVDTFEKIATEASR 72 (117)
T ss_pred HHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666554433333222344444444444333
No 106
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=25.62 E-value=1.6e+02 Score=17.74 Aligned_cols=47 Identities=17% Similarity=0.340 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhCCCCCCChhHHHHHHHHH--HHHHHHc--CChHHHHHHHhc
Q 030029 114 DIKKAYRRLSIQYHPDKNPDPEANKYFVEYI--SKAYQAL--TDPISRENFEKY 163 (184)
Q Consensus 114 eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I--~~AY~~L--~d~~~R~~Yd~~ 163 (184)
+.+.+|++|...+. ..+...-.+ +...| ...|..| ++..++..|+.|
T Consensus 1 ~a~~~F~~lL~e~~--i~~~s~W~~-~~~~l~~dpry~~i~~~~~~R~~lF~ey 51 (51)
T PF01846_consen 1 KAREAFKELLKEHK--ITPYSSWEE-VKPKLSKDPRYKAIGDSESERESLFEEY 51 (51)
T ss_dssp HHHHHHHHHHHHTT--S-TTSSHHH-HHHHHTTSCHHHHSTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC--CCCCCcHHH-HHHHHccCHHHHHhcCCHHHHHHHHHhC
Confidence 46789999888765 433321111 11112 3477778 445555555543
No 107
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=25.50 E-value=1e+02 Score=17.19 Aligned_cols=16 Identities=25% Similarity=0.621 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhC
Q 030029 112 DSDIKKAYRRLSIQYH 127 (184)
Q Consensus 112 ~~eIkkayr~l~~~~H 127 (184)
.++.|.+-|+.++.||
T Consensus 10 ~~~~r~~lR~AALeYH 25 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYH 25 (28)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 4678888999999998
No 108
>COG2879 Uncharacterized small protein [Function unknown]
Probab=25.07 E-value=1.5e+02 Score=19.82 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=13.6
Q ss_pred HHHHHHHHHhCCCCCCC
Q 030029 117 KAYRRLSIQYHPDKNPD 133 (184)
Q Consensus 117 kayr~l~~~~HPDk~~~ 133 (184)
..|-.-+++.|||+.+-
T Consensus 26 dnYVehmr~~hPd~p~m 42 (65)
T COG2879 26 DNYVEHMRKKHPDKPPM 42 (65)
T ss_pred HHHHHHHHHhCcCCCcc
Confidence 45888899999999763
No 109
>PF15128 T_cell_tran_alt: T-cell leukemia translocation-altered
Probab=24.88 E-value=1.3e+02 Score=21.46 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 030029 71 NLSLVLLWVIMIILIYYIKST 91 (184)
Q Consensus 71 ~~~l~~~w~l~~~l~~~~~~~ 91 (184)
.+.++++|+++.+++..+...
T Consensus 27 ifkllL~WlvlsLl~I~lAWk 47 (92)
T PF15128_consen 27 IFKLLLGWLVLSLLAIHLAWK 47 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466888999998888776553
No 110
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=24.86 E-value=55 Score=27.09 Aligned_cols=20 Identities=10% Similarity=0.265 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 030029 71 NLSLVLLWVIMIILIYYIKS 90 (184)
Q Consensus 71 ~~~l~~~w~l~~~l~~~~~~ 90 (184)
.++.+.+|.+...+......
T Consensus 193 v~i~i~~w~~s~~~~~v~~~ 212 (257)
T PF10320_consen 193 VIIFIFSWFLSQIINTVSLA 212 (257)
T ss_pred eeeeeHHHHHHHHHHHHHHH
Confidence 35566788877666655443
No 111
>PF01542 HCV_core: Hepatitis C virus core protein; InterPro: IPR002521 The Hepatitis C virus (HCV) is a small (50 nm in size), enveloped, single-stranded, positive sense RNA virus. It is the only known member of the hepacivirus genus in the family Flaviviridae. There are six major genotypes of the hepatitis C virus, which are identified numerically (e.g., genotype 1, genotype 2, etc.). Although Hepatitis A virus, Hepatitis B virus, and Hepatitis C virus have similar names, because they all cause liver inflammation, these are distinctly different viruses both genetically and clinically. HCV has a positive sense RNA genome that consists of a single open reading frame of 9600 nucleotides. At the 5' and 3' ends of the RNA are the UTR regions that are not translated into proteins but are important to translation and replication of the viral RNA. The 5' UTR has a ribosome binding site (IRES - Internal ribosome entry site) that starts the translation of a 3000 amino acid containing protein that is later cut by cellular and viral proteases into 10 active structural and non-structural smaller proteins. The HCV core protein is located at the N terminus of the polyprotein and is followed by the signal sequence located between the core protein and the E1 envelope glycoprotein. This signal sequence targets the nascent HCV polyprotein to the endoplasmic reticulum (ER), allowing the translocation of E1 to the ER lumen. Cleavage by a signal peptidase in the ER lumen releases the N-terminal end of E1, leaving the 191-amino acids (aa) core protein anchored by its C-terminal signal peptide [, ]. This 191aa polypeptide, also known as p23, is the immature form of the core protein; p23 is further processed by an intramembrane protease, the signal peptide peptidase (SPP), that removes the ER anchor , releasing p21, the N-terminal 179aa mature form of the core protein []. Core protein (p21) is responsible for packaging viral RNA to form a viral nucleocapsid, and it also promotes virion budding []. Two domains have been identified in the mature form of the HCV core protein, based on predicted structural and functional characteristics []. Domain I, corresponding to the N-terminal region of approximately 120 aa, is a highly basic domain that is probably involved in the recruitment of viral RNA during particle morphogenesis. Domain II, located between aa 120 and aa 175, is a hydrophobic region predicted to form one or two alpha-helices that are probably involved in the association of core with the ER membrane and lipid droplets. This entry represents domain II and domain III (ER anchor sequence) of the core protein p23. ; GO: 0005198 structural molecule activity
Probab=24.66 E-value=42 Score=22.90 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=15.3
Q ss_pred CCchHHHHHHHHhhhHHHH
Q 030029 8 SQLFPIFILTIMALPLVPY 26 (184)
Q Consensus 8 g~~f~~F~~t~~~~~lip~ 26 (184)
|=-|+.|++++++++..|.
T Consensus 56 gcsfsIFllaLlSc~~~p~ 74 (75)
T PF01542_consen 56 GCSFSIFLLALLSCLTVPA 74 (75)
T ss_pred CccHHHHHHHHHHhccccC
Confidence 4568999999999987763
No 112
>PRK00810 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=24.34 E-value=1.5e+02 Score=22.01 Aligned_cols=73 Identities=19% Similarity=0.248 Sum_probs=45.4
Q ss_pred ccCCcccccCCCCCC-----CHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHc--CChHHHHHHHhcCCCCC
Q 030029 96 QVFEPFSILGLEHGA-----SDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQAL--TDPISRENFEKYGHPDG 168 (184)
Q Consensus 96 ~~~d~Y~iLgv~~~a-----s~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L--~d~~~R~~Yd~~g~~~g 168 (184)
.-.++++.|||+-+. +.=.|-|+|......-.....++.+....+...+.+||+.. ++|..-+.+--+....+
T Consensus 17 sAEdff~ff~V~YDp~vvnV~RLHILKrF~~yL~~~~~~~~~e~~~~~~yr~aL~~AY~dF~~Stp~~ekvFKVfkd~~~ 96 (113)
T PRK00810 17 SAEEFFQLLGVPYDPKVVNVARLHILKRMGQYLAQEDFAGLPEAEARARCRAVLERAYADFVASSPLDQRVFKVLKDAVA 96 (113)
T ss_pred cHHHHHHHhCCCCCHHHHHHhHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHccCCHhHHHHHHHHHhcCc
Confidence 346788999998663 33446667766655443222233344455666789999975 67777777766655443
No 113
>PF03967 PRCH: Photosynthetic reaction centre, H-chain N-terminal region; InterPro: IPR015810 The photosynthetic apparatus in non-oxygenic bacteria consists of light-harvesting (LH) protein-pigment complexes LH1 and LH2, which use carotenoid and bacteriochlorophyll as primary donors []. LH1 acts as the energy collection hub, temporarily storing it before its transfer to the photosynthetic reaction centre (RC) []. Electrons are transferred from the primary donor via an intermediate acceptor (bacteriopheophytin) to the primary acceptor (quinine Qa), and finally to the secondary acceptor (quinone Qb), resulting in the formation of ubiquinol QbH2. RC uses the excitation energy to shuffle electrons across the membrane, transferring them via ubiquinol to the cytochrome bc1 complex in order to establish a proton gradient across the membrane, which is used by ATP synthetase to form ATP [, , ]. The core complex is anchored in the cell membrane, consisting of one unit of RC surrounded by LH1; in some species there may be additional subunits []. RC consists of three subunits: L (light), M (medium), and H (heavy). Subunits L and M provide the scaffolding for the chromophore, while subunit H contains a cytoplasmic domain []. In Rhodopseudomonas viridis, there is also a non-membranous tetrahaem cytochrome (4Hcyt) subunit on the periplasmic surface. This entry represents the N-terminal domain of the photosynthetic reaction centre H subunit, which includes the transmembrane domain and part of the cytoplasmic domain [].; GO: 0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, 0019684 photosynthesis, light reaction, 0030077 plasma membrane light-harvesting complex; PDB: 1RZZ_H 1PST_H 2J8D_H 3DUQ_H 1FNP_H 1KBY_H 1E14_H 2HG3_H 1UMX_H 1YST_H ....
Probab=23.85 E-value=1.1e+02 Score=23.59 Aligned_cols=21 Identities=33% Similarity=0.806 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 030029 71 NLSLVLLWVIMIILIYYIKST 91 (184)
Q Consensus 71 ~~~l~~~w~l~~~l~~~~~~~ 91 (184)
.+.|.++|++++.|+|++...
T Consensus 14 ql~lyaFwiFFagLi~YLrrE 34 (136)
T PF03967_consen 14 QLVLYAFWIFFAGLIYYLRRE 34 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 467788999999999988654
No 114
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=23.68 E-value=1.9e+02 Score=17.79 Aligned_cols=40 Identities=10% Similarity=0.187 Sum_probs=24.5
Q ss_pred HHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHH
Q 030029 117 KAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFE 161 (184)
Q Consensus 117 kayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd 161 (184)
+.+|...+.-|||.. ..+ ....+.+.|..|+|.++....+
T Consensus 13 ~~~~~~~~~~~~~~~----~~~-i~~~~~~~W~~l~~~~k~~y~~ 52 (66)
T cd00084 13 QEHRAEVKAENPGLS----VGE-ISKILGEMWKSLSEEEKKKYEE 52 (66)
T ss_pred HHHHHHHHHHCcCCC----HHH-HHHHHHHHHHhCCHHHHHHHHH
Confidence 445666666788843 222 2235899999999766544443
No 115
>PF12084 DUF3561: Protein of unknown function (DUF3561); InterPro: IPR022721 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.
Probab=23.39 E-value=2.8e+02 Score=20.48 Aligned_cols=13 Identities=23% Similarity=0.519 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHH
Q 030029 72 LSLVLLWVIMIIL 84 (184)
Q Consensus 72 ~~l~~~w~l~~~l 84 (184)
....+.|+++.++
T Consensus 93 ~V~~lFwllF~~L 105 (107)
T PF12084_consen 93 AVGCLFWLLFSWL 105 (107)
T ss_pred HHHHHHHHHHHHH
Confidence 3445577777665
No 116
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=23.00 E-value=1.8e+02 Score=18.93 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=24.8
Q ss_pred HHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHh
Q 030029 118 AYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEK 162 (184)
Q Consensus 118 ayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~ 162 (184)
..|...+.-||+.. .. + ....|.+.|..|+++++....|.
T Consensus 15 ~~r~~~~~~~p~~~-~~---e-isk~l~~~Wk~ls~~eK~~y~~~ 54 (72)
T cd01388 15 RHRRKVLQEYPLKE-NR---A-ISKILGDRWKALSNEEKQPYYEE 54 (72)
T ss_pred HHHHHHHHHCCCCC-HH---H-HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34555566789853 11 2 22358999999998776554443
No 117
>COG4959 TraF Type IV secretory pathway, protease TraF [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=21.92 E-value=45 Score=26.45 Aligned_cols=14 Identities=21% Similarity=0.228 Sum_probs=11.7
Q ss_pred ccccccccCCCCCC
Q 030029 171 AMDFKWALLSLSSC 184 (184)
Q Consensus 171 ~~~~~ialp~~~~~ 184 (184)
....|-+||.|+||
T Consensus 116 ~D~~GR~lp~~~gc 129 (173)
T COG4959 116 VDRVGRALPRWQGC 129 (173)
T ss_pred ccccCCcCCcccCC
Confidence 45578899999999
No 118
>PF13131 DUF3951: Protein of unknown function (DUF3951)
Probab=21.82 E-value=1.2e+02 Score=19.37 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=18.0
Q ss_pred hHHHHHHHHhhhHHHH-HHHHhcccccccccccccc
Q 030029 11 FPIFILTIMALPLVPY-TILKLCHAFSKKIKTIHCQ 45 (184)
Q Consensus 11 f~~F~~t~~~~~lip~-T~~~l~~~~~~~~~~~~c~ 45 (184)
+-.|+++...+++|-+ |+..+-++.++..-..+|.
T Consensus 6 iG~~~~~~~I~~lIgfity~mfV~K~s~q~~YTP~d 41 (53)
T PF13131_consen 6 IGIILFTIFIFFLIGFITYKMFVKKASPQIYYTPFD 41 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHhheecCCCceeeccch
Confidence 4446666666677665 4444444434333344443
No 119
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=21.70 E-value=1e+02 Score=18.99 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=15.0
Q ss_pred HHHHHhhhHHHHHHHHhccccc
Q 030029 15 ILTIMALPLVPYTILKLCHAFS 36 (184)
Q Consensus 15 ~~t~~~~~lip~T~~~l~~~~~ 36 (184)
+..+++++|+-+|-|.+|-.+.
T Consensus 7 ~~i~i~~~lv~~Tgy~iYtaFG 28 (43)
T PF02468_consen 7 LAIFISCLLVSITGYAIYTAFG 28 (43)
T ss_pred HHHHHHHHHHHHHhhhhhheeC
Confidence 3445566788888888876654
No 120
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=20.90 E-value=2.3e+02 Score=17.78 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=22.7
Q ss_pred HHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHH
Q 030029 117 KAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISREN 159 (184)
Q Consensus 117 kayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~ 159 (184)
+..+...+.-||+.. ..+.. +.+.+.|..|++.++...
T Consensus 13 ~~~~~~~k~~~p~~~----~~~i~-~~~~~~W~~l~~~eK~~y 50 (69)
T PF00505_consen 13 KEKRAKLKEENPDLS----NKEIS-KILAQMWKNLSEEEKAPY 50 (69)
T ss_dssp HHHHHHHHHHSTTST----HHHHH-HHHHHHHHCSHHHHHHHH
T ss_pred HHHHHHHHHHhcccc----cccch-hhHHHHHhcCCHHHHHHH
Confidence 344555566688865 22222 348889999876554433
Done!