Query 030029
Match_columns 184
No_of_seqs 305 out of 1301
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 11:42:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030029.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030029hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hdj_A Human HSP40, HDJ-1; mol 99.9 2.4E-22 8.2E-27 138.6 9.1 69 98-167 3-71 (77)
2 2ctp_A DNAJ homolog subfamily 99.9 1.8E-22 6.3E-27 139.5 8.4 74 94-168 3-76 (78)
3 2dn9_A DNAJ homolog subfamily 99.9 5.5E-22 1.9E-26 137.4 8.3 74 94-168 3-77 (79)
4 2cug_A Mkiaa0962 protein; DNAJ 99.9 9.1E-22 3.1E-26 139.2 8.0 71 96-167 15-85 (88)
5 2ej7_A HCG3 gene; HCG3 protein 99.9 1.7E-21 5.7E-26 135.8 8.2 72 95-167 6-79 (82)
6 2ctr_A DNAJ homolog subfamily 99.8 1.8E-21 6.1E-26 137.7 7.4 71 95-166 4-74 (88)
7 2och_A Hypothetical protein DN 99.8 2.8E-21 9.6E-26 132.0 7.7 67 96-165 6-72 (73)
8 1wjz_A 1700030A21RIK protein; 99.8 5.4E-21 1.8E-25 136.4 6.5 72 94-166 12-90 (94)
9 2dmx_A DNAJ homolog subfamily 99.8 1.1E-20 3.7E-25 134.6 7.3 72 95-167 6-79 (92)
10 2ctq_A DNAJ homolog subfamily 99.8 7.3E-21 2.5E-25 140.3 5.5 72 95-167 17-89 (112)
11 1bq0_A DNAJ, HSP40; chaperone, 99.8 7E-21 2.4E-25 138.3 5.2 72 97-169 2-74 (103)
12 2lgw_A DNAJ homolog subfamily 99.8 1.3E-20 4.4E-25 136.3 6.1 69 98-167 2-72 (99)
13 2yua_A Williams-beuren syndrom 99.8 2.9E-20 9.9E-25 134.2 7.5 71 94-165 13-84 (99)
14 2ctw_A DNAJ homolog subfamily 99.8 4E-20 1.4E-24 135.8 8.1 72 95-167 14-86 (109)
15 2o37_A Protein SIS1; HSP40, J- 99.8 4E-20 1.4E-24 131.8 7.1 68 96-166 6-73 (92)
16 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 3.1E-20 1.1E-24 136.1 4.9 72 96-168 13-89 (109)
17 3apq_A DNAJ homolog subfamily 99.8 2.7E-19 9.2E-24 142.9 7.9 69 98-167 2-71 (210)
18 2l6l_A DNAJ homolog subfamily 99.8 7.8E-19 2.7E-23 136.0 6.1 72 93-165 5-83 (155)
19 2ys8_A RAB-related GTP-binding 99.7 5.5E-19 1.9E-23 125.5 4.5 62 96-158 25-86 (90)
20 1gh6_A Large T antigen; tumor 99.7 7.3E-20 2.5E-24 135.7 -0.6 81 97-182 7-89 (114)
21 3lz8_A Putative chaperone DNAJ 99.7 1.2E-19 3.9E-24 156.4 0.0 74 92-166 22-95 (329)
22 1faf_A Large T antigen; J doma 99.7 1.7E-18 5.7E-23 120.3 3.7 67 96-167 9-77 (79)
23 2pf4_E Small T antigen; PP2A, 99.7 8E-19 2.7E-23 138.7 0.5 66 96-165 9-76 (174)
24 3hho_A CO-chaperone protein HS 99.7 8.5E-18 2.9E-22 132.8 5.1 68 97-165 3-78 (174)
25 1fpo_A HSC20, chaperone protei 99.7 1.2E-17 3.9E-22 131.8 5.2 66 99-165 2-75 (171)
26 1iur_A KIAA0730 protein; DNAJ 99.7 2E-17 6.7E-22 117.2 1.8 63 94-157 12-76 (88)
27 3bvo_A CO-chaperone protein HS 99.6 1.2E-16 3.9E-21 129.6 5.5 69 96-165 41-119 (207)
28 2guz_A Mitochondrial import in 99.6 4.5E-17 1.5E-21 110.8 1.8 61 93-157 9-70 (71)
29 1n4c_A Auxilin; four helix bun 99.6 1.6E-16 5.5E-21 126.3 2.9 63 97-160 116-182 (182)
30 2qwo_B Putative tyrosine-prote 99.6 3.3E-16 1.1E-20 111.8 3.8 55 98-153 33-91 (92)
31 3uo3_A J-type CO-chaperone JAC 99.6 4.5E-16 1.5E-20 123.7 4.8 70 95-167 8-87 (181)
32 3apo_A DNAJ homolog subfamily 99.6 1.2E-16 3.9E-21 149.5 1.0 72 95-167 18-90 (780)
33 3ag7_A Putative uncharacterize 99.6 5.5E-16 1.9E-20 113.4 1.9 58 96-155 39-104 (106)
34 2guz_B Mitochondrial import in 99.1 7.1E-11 2.4E-15 78.9 3.3 54 97-154 3-59 (65)
35 2y4t_A DNAJ homolog subfamily 99.0 2.5E-10 8.6E-15 96.7 6.1 65 97-162 381-449 (450)
36 2pzi_A Probable serine/threoni 78.0 1.4 4.8E-05 40.1 3.4 46 97-150 628-675 (681)
37 2lif_A Core protein P21; signa 79.3 0.45 1.5E-05 25.7 0.0 20 8-27 3-22 (27)
38 2cqn_A Formin-binding protein 57.9 28 0.00097 22.9 5.7 53 109-163 5-61 (77)
39 1uzc_A Hypothetical protein FL 52.3 25 0.00085 22.9 4.6 53 109-163 11-65 (71)
40 2b7e_A PRE-mRNA processing pro 38.4 73 0.0025 20.0 5.5 49 113-164 3-56 (59)
41 2nqb_D Histone H2B; nucleosome 32.3 34 0.0012 24.8 3.0 38 120-157 40-77 (123)
42 2knc_A Integrin alpha-IIB; tra 30.9 63 0.0022 20.0 3.7 32 1-32 3-34 (54)
43 1tzy_B Histone H2B; histone-fo 30.2 39 0.0013 24.6 3.0 38 120-157 43-80 (126)
44 1r5q_A KAI A, circadian oscill 29.7 97 0.0033 21.5 4.8 29 112-140 11-39 (102)
45 1qqr_A Streptokinase domain B; 25.6 36 0.0012 25.1 2.1 30 101-130 35-64 (138)
46 1v2z_A Circadian clock protein 25.1 1E+02 0.0035 21.7 4.3 29 112-140 18-46 (111)
47 3ne5_A Cation efflux system pr 23.9 2.1E+02 0.0072 27.3 7.7 20 15-34 495-514 (1054)
48 2jss_A Chimera of histone H2B. 22.5 87 0.003 24.0 4.0 36 119-154 9-44 (192)
49 1ug2_A 2610100B20RIK gene prod 21.8 47 0.0016 22.9 2.0 23 109-131 67-89 (95)
50 2doe_A Transcription elongatio 20.8 1.9E+02 0.0063 19.0 5.9 53 109-163 13-67 (83)
51 1hry_A Human SRY; DNA, DNA-bin 20.7 1.6E+02 0.0055 18.2 5.0 38 117-160 17-54 (76)
No 1
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.87 E-value=2.4e-22 Score=138.63 Aligned_cols=69 Identities=49% Similarity=0.902 Sum_probs=64.6
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCC
Q 030029 98 FEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGHPD 167 (184)
Q Consensus 98 ~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~ 167 (184)
.|+|+||||++++|.++||++||++++++|||+++++++.+.|.+ |++||++|+||.+|..||++|..+
T Consensus 3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~-i~~Ay~~L~d~~~R~~Yd~~~~~~ 71 (77)
T 1hdj_A 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKE-IAEAYDVLSDPRKREIFDRYGEEG 71 (77)
T ss_dssp CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHH-HHHHHHHTTCHHHHHHHHHTCGGG
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHH-HHHHHHHHCCHHHHHHHHHHcccc
Confidence 689999999999999999999999999999999988878888875 999999999999999999999754
No 2
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.8e-22 Score=139.53 Aligned_cols=74 Identities=41% Similarity=0.755 Sum_probs=67.8
Q ss_pred ccccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCCC
Q 030029 94 EMQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGHPDG 168 (184)
Q Consensus 94 ~~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~g 168 (184)
.+...|+|+||||+++++.++||++||++++++|||+++.+++.+.|.+ |++||++|+||.+|..||++|..+.
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~-i~~Ay~~L~d~~~R~~YD~~~~~~~ 76 (78)
T 2ctp_A 3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKA-IGTAYAVLSNPEKRKQYDQFGSGPS 76 (78)
T ss_dssp CSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHH-HHHHHHHHTSHHHHHHHHHTCSCSC
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHH-HHHHHHHHCCHHHHHHHHHcCcccc
Confidence 3456899999999999999999999999999999999988888888875 9999999999999999999998653
No 3
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=5.5e-22 Score=137.36 Aligned_cols=74 Identities=36% Similarity=0.697 Sum_probs=66.0
Q ss_pred ccccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCCC
Q 030029 94 EMQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD-PEANKYFVEYISKAYQALTDPISRENFEKYGHPDG 168 (184)
Q Consensus 94 ~~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~-~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~g 168 (184)
.+...|+|+||||+++++.++||++||++++++|||++++ +++.+.|.+ |++||++|+||.+|..||.+|..+.
T Consensus 3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~-i~~Ay~~L~d~~~R~~YD~~g~~~~ 77 (79)
T 2dn9_A 3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQ-LAEAYEVLSDEVKRKQYDAYGSGPS 77 (79)
T ss_dssp SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHH-HHHHHHHHHSHHHHHHHHHSCCCCS
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHH-HHHHHHHHCCHHHHHHHHhccCcCC
Confidence 3456899999999999999999999999999999999984 566677765 9999999999999999999997543
No 4
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.86 E-value=9.1e-22 Score=139.21 Aligned_cols=71 Identities=45% Similarity=0.856 Sum_probs=65.9
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCC
Q 030029 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGHPD 167 (184)
Q Consensus 96 ~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~ 167 (184)
...|+|+||||+++++.++||++||++++++|||+++++.+.+.|.+ |++||++|+||.+|..||++|..+
T Consensus 15 ~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~-i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQ-ISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp SSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHH-HHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHH-HHHHHHHHCCHHHHHHHHHcCCCC
Confidence 46799999999999999999999999999999999988778888875 999999999999999999999753
No 5
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.7e-21 Score=135.81 Aligned_cols=72 Identities=36% Similarity=0.746 Sum_probs=64.1
Q ss_pred cccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh--hHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCC
Q 030029 95 MQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP--EANKYFVEYISKAYQALTDPISRENFEKYGHPD 167 (184)
Q Consensus 95 ~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~--~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~ 167 (184)
....|+|+||||+++++.++||++||++++++|||++++. .+.+.|.+ |++||++|+||.+|..||++|..+
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~-i~~Ay~~L~d~~~R~~YD~~g~~~ 79 (82)
T 2ej7_A 6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQ-VAEAYEVLSDAKKRDIYDRYGSGP 79 (82)
T ss_dssp SSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHH-HHHHHHHHSSTTHHHHHHHTCCCS
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHcCccc
Confidence 3458999999999999999999999999999999999864 45566764 999999999999999999999754
No 6
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.8e-21 Score=137.72 Aligned_cols=71 Identities=39% Similarity=0.728 Sum_probs=65.9
Q ss_pred cccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCC
Q 030029 95 MQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGHP 166 (184)
Q Consensus 95 ~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~ 166 (184)
....|+|+||||+++++.++||++||++++++|||+++++++.+.|.+ |++||++|+||.+|..||.+|+.
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~-i~~Ay~~L~d~~~R~~Yd~~~~~ 74 (88)
T 2ctr_A 4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFRE-IAEAYETLSDANRRKEYDTLGHS 74 (88)
T ss_dssp CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHH-HHHHHHHHHSSHHHHHHHHTCHH
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHH-HHHHHHHHCCHHHHHHHHHhCcc
Confidence 456899999999999999999999999999999999998888888875 99999999999999999999863
No 7
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.84 E-value=2.8e-21 Score=132.03 Aligned_cols=67 Identities=39% Similarity=0.763 Sum_probs=60.7
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCC
Q 030029 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGH 165 (184)
Q Consensus 96 ~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~ 165 (184)
...|+|+||||++++|.++||++||++++++|||++++. .+.|.+ |++||++|+||.+|..||++|.
T Consensus 6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~--~~~f~~-i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG--AEQFKQ-ISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC--HHHHHH-HHHHHHHHTSHHHHHHHHHTC-
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH--HHHHHH-HHHHHHHHCCHHHHHHHHhcCC
Confidence 457999999999999999999999999999999998754 456765 9999999999999999999996
No 8
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.83 E-value=5.4e-21 Score=136.36 Aligned_cols=72 Identities=29% Similarity=0.518 Sum_probs=63.9
Q ss_pred ccccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-------hhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCC
Q 030029 94 EMQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD-------PEANKYFVEYISKAYQALTDPISRENFEKYGHP 166 (184)
Q Consensus 94 ~~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~-------~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~ 166 (184)
.+...|+|+||||+++++.++||++||++++++|||+++. +.+.+.|.+ |++||++|+||.+|..||.+...
T Consensus 12 ~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~-i~~Ay~~L~d~~~R~~YD~~l~~ 90 (94)
T 1wjz_A 12 QTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIE-IDQAWKILGNEETKKKYDLQRSG 90 (94)
T ss_dssp SSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHH-HHHHHHHHSSSSHHHHHHHHSCC
T ss_pred cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHccC
Confidence 4567899999999999999999999999999999999874 345567764 99999999999999999998764
No 9
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=134.56 Aligned_cols=72 Identities=42% Similarity=0.726 Sum_probs=64.2
Q ss_pred cccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh--hHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCC
Q 030029 95 MQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP--EANKYFVEYISKAYQALTDPISRENFEKYGHPD 167 (184)
Q Consensus 95 ~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~--~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~ 167 (184)
....|+|+||||+++++.++||++||++++++|||++++. .+.+.|.+ |++||++|+||.+|..||++|...
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~-i~~Ay~~L~d~~~R~~Yd~~~~~~ 79 (92)
T 2dmx_A 6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKL-VSEAYEVLSDSKKRSLYDRAGCDS 79 (92)
T ss_dssp CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHH-HHHHHHHHHSHHHHHHHHHHCSCS
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHhCccc
Confidence 3457999999999999999999999999999999999753 45666764 999999999999999999998754
No 10
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=7.3e-21 Score=140.32 Aligned_cols=72 Identities=25% Similarity=0.485 Sum_probs=65.0
Q ss_pred cccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCC
Q 030029 95 MQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNP-DPEANKYFVEYISKAYQALTDPISRENFEKYGHPD 167 (184)
Q Consensus 95 ~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~-~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~ 167 (184)
....|+|+||||+++++.++||++||++++++|||+++ ++++.+.|.+ |++||++|+||.+|..||++|...
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~-i~~Ay~vL~d~~~R~~YD~~~~~~ 89 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQK-LQKAKEILTNEESRARYDHWRRSQ 89 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHH-HHHHHHHHHSHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHH-HHHHHHHHCCHHHHHHHHHhhhhc
Confidence 34589999999999999999999999999999999998 4667777865 999999999999999999998754
No 11
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.82 E-value=7e-21 Score=138.31 Aligned_cols=72 Identities=40% Similarity=0.753 Sum_probs=64.6
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCCCC
Q 030029 97 VFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD-PEANKYFVEYISKAYQALTDPISRENFEKYGHPDGR 169 (184)
Q Consensus 97 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~-~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~g~ 169 (184)
..|+|+||||++++|.++||++||++++++|||++++ +++.+.|.+ |++||++|+||.+|..||++|+....
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~-i~~Ay~~L~d~~~R~~YD~~~~~~~~ 74 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKE-IKEAYEVLTDSQKRAAYDQYGHAAFE 74 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHH-HTTTTTSTTCSHHHHHTTTSTTTSSC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHhhhhhc
Confidence 3689999999999999999999999999999999984 556677765 99999999999999999999987533
No 12
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.82 E-value=1.3e-20 Score=136.34 Aligned_cols=69 Identities=45% Similarity=0.743 Sum_probs=61.5
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh--hHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCC
Q 030029 98 FEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP--EANKYFVEYISKAYQALTDPISRENFEKYGHPD 167 (184)
Q Consensus 98 ~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~--~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~ 167 (184)
.|+|+||||++++|.++||++||++++++|||++++. .+.+.|. .|++||++|+||.+|..||.+|..+
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~-~I~~AY~vL~d~~~R~~YD~~g~~~ 72 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFK-EVAEAYEVLSDKHKREIYDRYGREG 72 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHH-HHHHHHHHHHSHHHHHHHHHHHHC-
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHhCccc
Confidence 5899999999999999999999999999999999753 3556676 4999999999999999999998654
No 13
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.9e-20 Score=134.23 Aligned_cols=71 Identities=31% Similarity=0.504 Sum_probs=63.6
Q ss_pred ccccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCC
Q 030029 94 EMQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNP-DPEANKYFVEYISKAYQALTDPISRENFEKYGH 165 (184)
Q Consensus 94 ~~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~-~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~ 165 (184)
.+...|+|+||||+++++.++||++||+|++++|||+++ ++++.+.|.+ |++||++|+||.+|..||++..
T Consensus 13 ~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~-i~~Ay~~L~d~~~R~~YD~~l~ 84 (99)
T 2yua_A 13 SYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTR-ISQAYVVLGSATLRRKYDRGLL 84 (99)
T ss_dssp SSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHH-HHHHHHHTTSHHHHHHHHHTCC
T ss_pred CCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHH-HHHHHHHHCCHHHHHHHHHhcc
Confidence 456789999999999999999999999999999999997 4566677765 9999999999999999998643
No 14
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=4e-20 Score=135.78 Aligned_cols=72 Identities=46% Similarity=0.787 Sum_probs=64.6
Q ss_pred cccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCC
Q 030029 95 MQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPD-PEANKYFVEYISKAYQALTDPISRENFEKYGHPD 167 (184)
Q Consensus 95 ~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~-~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~ 167 (184)
....|+|+||||+++++.++||++||+|++++|||++++ +++.+.|.+ |++||++|+||.+|..||++|..+
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~-i~~Ay~vL~d~~~R~~YD~~g~~~ 86 (109)
T 2ctw_A 14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKE-INNAHAILTDATKRNIYDKYGSLG 86 (109)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHH-HHHHHHHHTCHHHHHHHHHTCHHH
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHH-HHHHHHHHcCHHHHHHHHHhcccc
Confidence 356899999999999999999999999999999999985 566677765 999999999999999999998643
No 15
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.81 E-value=4e-20 Score=131.82 Aligned_cols=68 Identities=35% Similarity=0.728 Sum_probs=61.2
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCC
Q 030029 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGHP 166 (184)
Q Consensus 96 ~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~ 166 (184)
...|+|+||||+++++.++||++||++++++|||+++.. .+.|.+ |++||++|+||.+|..||++|..
T Consensus 6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--~~~f~~-i~~Ay~~L~d~~~R~~YD~~~~~ 73 (92)
T 2o37_A 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD--TEKFKE-ISEAFEILNDPQKREIYDQYGLE 73 (92)
T ss_dssp SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC--HHHHHH-HHHHHHHHTSHHHHHHHHHHCHH
T ss_pred cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh--HHHHHH-HHHHHHHHCCHHHHHHHHHHCHH
Confidence 567999999999999999999999999999999998754 346765 99999999999999999999754
No 16
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.80 E-value=3.1e-20 Score=136.10 Aligned_cols=72 Identities=25% Similarity=0.428 Sum_probs=64.2
Q ss_pred ccCCcccccCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC----hhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCCC
Q 030029 96 QVFEPFSILGLEHGA-SDSDIKKAYRRLSIQYHPDKNPD----PEANKYFVEYISKAYQALTDPISRENFEKYGHPDG 168 (184)
Q Consensus 96 ~~~d~Y~iLgv~~~a-s~~eIkkayr~l~~~~HPDk~~~----~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~g 168 (184)
...|+|+||||++++ |.++||++||++++++|||++++ +.+.+.|.+ |++||++|+||.+|..||++|...+
T Consensus 13 ~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~-i~~AY~~L~d~~~R~~YD~~~~~~~ 89 (109)
T 2qsa_A 13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRV-IATAYETLKDDEAKTNYDYYLDHPD 89 (109)
T ss_dssp TTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHH-HHHHHHHHHSHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHH-HHHHHHHHCCHHHHHHHHHhccCch
Confidence 458999999999999 99999999999999999999986 445667765 9999999999999999999986543
No 17
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.78 E-value=2.7e-19 Score=142.91 Aligned_cols=69 Identities=38% Similarity=0.783 Sum_probs=63.4
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCC
Q 030029 98 FEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNP-DPEANKYFVEYISKAYQALTDPISRENFEKYGHPD 167 (184)
Q Consensus 98 ~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~-~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~ 167 (184)
.|+|+||||+++||.++||+|||++++++|||+++ ++++.+.|.+ |++||++|+||.+|..||++|..+
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~-i~~Ay~~L~~~~~r~~yd~~~~~~ 71 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLK-INRAYEVLKDEDLRKKYDKYGEKG 71 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHH-HHHHHHHHTSHHHHHHHHHHTTTT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHH-HHHHHHHhCCHHHHHHHHHhcccc
Confidence 58999999999999999999999999999999996 4667777875 999999999999999999999754
No 18
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.75 E-value=7.8e-19 Score=135.99 Aligned_cols=72 Identities=28% Similarity=0.493 Sum_probs=62.7
Q ss_pred cccccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh-------HHHHHHHHHHHHHHHcCChHHHHHHHhcCC
Q 030029 93 REMQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPE-------ANKYFVEYISKAYQALTDPISRENFEKYGH 165 (184)
Q Consensus 93 ~~~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~-------~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~ 165 (184)
..+...|+|+||||+++++.++||++||++++++||||+++.. +.+.|. .|++||++|+||.+|+.||..+.
T Consensus 5 ~~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~-~i~~Ay~~L~dp~~R~~Yd~~~~ 83 (155)
T 2l6l_A 5 EQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFI-EIDQAWKILGNEETKREYDLQRC 83 (155)
T ss_dssp CCCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHH-HHHHHHHHSSSHHHHCHHHHHHH
T ss_pred ccCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHcc
Confidence 3456689999999999999999999999999999999987542 346676 49999999999999999998764
No 19
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.5e-19 Score=125.52 Aligned_cols=62 Identities=32% Similarity=0.567 Sum_probs=57.5
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHH
Q 030029 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRE 158 (184)
Q Consensus 96 ~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~ 158 (184)
...|+|+||||+++++.++||++||++++++|||+++++.+.+.|.+ |++||++|+||.+|.
T Consensus 25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~-i~~Ay~~L~d~~~R~ 86 (90)
T 2ys8_A 25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKA-VVNARTALLKNIKSG 86 (90)
T ss_dssp TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHH-HHHHHHHHHHHHCCS
T ss_pred cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHH-HHHHHHHHCCccccc
Confidence 45899999999999999999999999999999999988888888875 999999999998774
No 20
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.75 E-value=7.3e-20 Score=135.66 Aligned_cols=81 Identities=20% Similarity=0.310 Sum_probs=66.6
Q ss_pred cCCcccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCCCCCcccc
Q 030029 97 VFEPFSILGLEHGASD--SDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGHPDGRQAMDF 174 (184)
Q Consensus 97 ~~d~Y~iLgv~~~as~--~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~g~~~~~~ 174 (184)
..++|+||||+++++. ++||++||+|++++||||+++. +.|.+ |++||++|+||.+|..||.+|.... .....
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~---e~f~~-I~~AYevL~d~~~R~~~~~~~~~w~-~~~~~ 81 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE---EKMKK-MNTLYKKMEDGVKYAHQPDFGGFWD-ATEIP 81 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTT---TTTHH-HHHHHHHHHHHHHSCCSSCCSCCCC-CCCCC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccH---HHHHH-HHHHHHHHCCHHHHHHhhhcccccc-cccCC
Confidence 4689999999999999 9999999999999999999864 45765 9999999999999999999885332 22334
Q ss_pred ccccCCCC
Q 030029 175 KWALLSLS 182 (184)
Q Consensus 175 ~ialp~~~ 182 (184)
..+-|.|.
T Consensus 82 ~~g~p~w~ 89 (114)
T 1gh6_A 82 TYGTDEWE 89 (114)
T ss_dssp CCSSSCHH
T ss_pred CCCCchHH
Confidence 44566663
No 21
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.74 E-value=1.2e-19 Score=156.44 Aligned_cols=74 Identities=30% Similarity=0.562 Sum_probs=0.0
Q ss_pred ccccccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCC
Q 030029 92 SREMQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGHP 166 (184)
Q Consensus 92 ~~~~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~ 166 (184)
...|...|||+||||+++||.+|||+|||+|+++||||+++++++.++|.+ |++||++|+||.+|+.||+|+..
T Consensus 22 ~~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~-i~~Ay~vL~d~~~R~~YD~~~~~ 95 (329)
T 3lz8_A 22 SNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKD-LAEAWEVLKDEQRRAEYDQLWQH 95 (329)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHH-HHHHHHHhhhhhhhcccchhhcc
Confidence 344667899999999999999999999999999999999988777788875 99999999999999999999543
No 22
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.72 E-value=1.7e-18 Score=120.33 Aligned_cols=67 Identities=16% Similarity=0.284 Sum_probs=58.7
Q ss_pred ccCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCC
Q 030029 96 QVFEPFSILGLEHG--ASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGHPD 167 (184)
Q Consensus 96 ~~~d~Y~iLgv~~~--as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~ 167 (184)
...++|+||||+++ +|.++||++||++++++|||++++. +.|.+ |++||++|+|+..|.. +.||.++
T Consensus 9 ~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~---~~f~~-i~~AYe~L~~~~~r~~-~~~g~~~ 77 (79)
T 1faf_A 9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSH---ALMQE-LNSLWGTFKTEVYNLR-MNLGGTG 77 (79)
T ss_dssp HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCH---HHHHH-HHHHHHHHHHHHHHHT-TCCSSCC
T ss_pred hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCH---HHHHH-HHHHHHHHhhHHHHHH-HhcCCcc
Confidence 34679999999999 9999999999999999999998753 55765 9999999999999988 6688753
No 23
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.71 E-value=8e-19 Score=138.70 Aligned_cols=66 Identities=24% Similarity=0.464 Sum_probs=57.0
Q ss_pred ccCCcccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCC
Q 030029 96 QVFEPFSILGLEHGAS--DSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEKYGH 165 (184)
Q Consensus 96 ~~~d~Y~iLgv~~~as--~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~ 165 (184)
...|+|+||||+++|+ .++||+|||++++++|||+++++ +.|.+ |++||++|+||.+|+.||+||.
T Consensus 9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~---e~F~~-I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE---EKMKK-MNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CC---TTTTH-HHHHHHHHHHHHHHHTSCGGGG
T ss_pred ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCH---HHHHH-HHHHHHHhCCHHHHHHHhccCC
Confidence 3478999999999998 59999999999999999998874 45764 9999999999999999999995
No 24
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.70 E-value=8.5e-18 Score=132.84 Aligned_cols=68 Identities=26% Similarity=0.427 Sum_probs=59.0
Q ss_pred cCCcccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCChh------HHHHHHHHHHHHHHHcCChHHHHHHHhcCC
Q 030029 97 VFEPFSILGLEHGAS--DSDIKKAYRRLSIQYHPDKNPDPE------ANKYFVEYISKAYQALTDPISRENFEKYGH 165 (184)
Q Consensus 97 ~~d~Y~iLgv~~~as--~~eIkkayr~l~~~~HPDk~~~~~------~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~ 165 (184)
..|||+||||+++++ .++||++||++++++|||++++.. +.+.|. .|++||++|+||.+|..||...+
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~-~In~AY~vL~dp~~R~~Yd~~l~ 78 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAA-QINDAYQTLKDPLRRAEYLLSLQ 78 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHH-HHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHH-HHHHHHHHHcChHHHHHHHHHcc
Confidence 479999999999988 999999999999999999987543 345676 49999999999999999997543
No 25
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.69 E-value=1.2e-17 Score=131.78 Aligned_cols=66 Identities=27% Similarity=0.437 Sum_probs=58.6
Q ss_pred CcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCChh------HHHHHHHHHHHHHHHcCChHHHHHHHhcCC
Q 030029 99 EPFSILGLEHGA--SDSDIKKAYRRLSIQYHPDKNPDPE------ANKYFVEYISKAYQALTDPISRENFEKYGH 165 (184)
Q Consensus 99 d~Y~iLgv~~~a--s~~eIkkayr~l~~~~HPDk~~~~~------~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~ 165 (184)
|||+||||++++ |.++||++||++++++|||++++.. +.+.|. .|++||++|+||.+|..||...+
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~-~In~AY~vL~dp~~R~~Yd~~l~ 75 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSA-TINQAWQTLRHPLMRAEYLLSLH 75 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHH-HHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHH-HHHHHHHHHcCchHHHHHHHHhc
Confidence 799999999999 9999999999999999999987532 235676 49999999999999999998765
No 26
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.65 E-value=2e-17 Score=117.25 Aligned_cols=63 Identities=29% Similarity=0.380 Sum_probs=55.3
Q ss_pred ccccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh--hHHHHHHHHHHHHHHHcCChHHH
Q 030029 94 EMQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP--EANKYFVEYISKAYQALTDPISR 157 (184)
Q Consensus 94 ~~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~--~~~~~~~~~I~~AY~~L~d~~~R 157 (184)
.+...++|+||||+++||.+|||++||+|++++|||++++. ++.+.|.+ |++||++|+|+..|
T Consensus 12 ~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~-I~~AYevL~~~~~r 76 (88)
T 1iur_A 12 GSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKH-LQNEINRLEKQAFL 76 (88)
T ss_dssp SSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHH-HHHHHHHHHHHTTC
T ss_pred CccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHH-HHHHHHHHHhhccc
Confidence 34557899999999999999999999999999999999863 45677765 99999999998776
No 27
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.64 E-value=1.2e-16 Score=129.61 Aligned_cols=69 Identities=22% Similarity=0.367 Sum_probs=58.5
Q ss_pred ccCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCChh------HHHHHHHHHHHHHHHcCChHHHHHHHh--cCC
Q 030029 96 QVFEPFSILGLEHG--ASDSDIKKAYRRLSIQYHPDKNPDPE------ANKYFVEYISKAYQALTDPISRENFEK--YGH 165 (184)
Q Consensus 96 ~~~d~Y~iLgv~~~--as~~eIkkayr~l~~~~HPDk~~~~~------~~~~~~~~I~~AY~~L~d~~~R~~Yd~--~g~ 165 (184)
...|||+||||+++ +|.++||++||+|++++|||++++.. +.+.|. .|++||++|+||.+|..||. .|.
T Consensus 41 ~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~-~In~AY~vLsdp~~R~~Yd~~l~G~ 119 (207)
T 3bvo_A 41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHST-LVNDAYKTLLAPLSRGLYLLKLHGI 119 (207)
T ss_dssp TTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHH-HHHHHHHHHHSHHHHHHHHHHHTTC
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHhcCC
Confidence 45799999999986 78999999999999999999987532 234565 49999999999999999984 454
No 28
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.63 E-value=4.5e-17 Score=110.80 Aligned_cols=61 Identities=25% Similarity=0.336 Sum_probs=52.4
Q ss_pred cccccCCcccccCCCC-CCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHH
Q 030029 93 REMQVFEPFSILGLEH-GASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISR 157 (184)
Q Consensus 93 ~~~~~~d~Y~iLgv~~-~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R 157 (184)
..|...++|+||||++ ++|.++||++||+|++++|||+++++ +.|.+ |++||++|+|+..|
T Consensus 9 ~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~---~~f~~-i~~Aye~L~~~~~r 70 (71)
T 2guz_A 9 PKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSP---FLATK-INEAKDFLEKRGIS 70 (71)
T ss_dssp SSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCH---HHHHH-HHHHHHHHHHHCCC
T ss_pred CCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCH---HHHHH-HHHHHHHHhhhhhc
Confidence 4466678999999999 79999999999999999999997654 35764 99999999987654
No 29
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.61 E-value=1.6e-16 Score=126.28 Aligned_cols=63 Identities=21% Similarity=0.393 Sum_probs=56.0
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh----HHHHHHHHHHHHHHHcCChHHHHHH
Q 030029 97 VFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPE----ANKYFVEYISKAYQALTDPISRENF 160 (184)
Q Consensus 97 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~----~~~~~~~~I~~AY~~L~d~~~R~~Y 160 (184)
..|+|++|||+++++.++||++||++++++||||+++.. +.+.|.+ |++||++|+||.+|..|
T Consensus 116 ~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~-I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFME-LNDAWSEFENQGQKPLY 182 (182)
T ss_dssp TCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHH-HHHHHHHHHHHHSSCCC
T ss_pred ccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHH-HHHHHHHHCCHHhhhhC
Confidence 369999999999999999999999999999999987543 5567765 99999999999998765
No 30
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.60 E-value=3.3e-16 Score=111.77 Aligned_cols=55 Identities=22% Similarity=0.423 Sum_probs=48.6
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh----HHHHHHHHHHHHHHHcCC
Q 030029 98 FEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPE----ANKYFVEYISKAYQALTD 153 (184)
Q Consensus 98 ~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~----~~~~~~~~I~~AY~~L~d 153 (184)
.++|++|||+++||.+|||+|||++++++||||+++.. +.+.|.+ |++||++|.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~-i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFME-LNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHH-HHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHH-HHHHHHHHHh
Confidence 58999999999999999999999999999999987542 5567765 9999999964
No 31
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.60 E-value=4.5e-16 Score=123.75 Aligned_cols=70 Identities=23% Similarity=0.364 Sum_probs=59.6
Q ss_pred cccCCccccc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHHHh---cC
Q 030029 95 MQVFEPFSIL------GLEH-GASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENFEK---YG 164 (184)
Q Consensus 95 ~~~~d~Y~iL------gv~~-~as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~---~g 164 (184)
....|||+|| |+++ ++|.++||++||+|++++|||++++ +.+.|.+ |++||++|+||.+|..||. .|
T Consensus 8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~--a~~~f~~-i~~AY~vL~dp~~R~~Yd~~l~~g 84 (181)
T 3uo3_A 8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ--GSEQSST-LNQAYHTLKDPLRRSQYMLKLLRN 84 (181)
T ss_dssp CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS--CSSGGGS-HHHHHHHHHSHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc--HHHHHHH-HHHHHHHHcChHHHHHHHHHHHhC
Confidence 3457999999 4665 8999999999999999999999986 4455765 9999999999999999998 55
Q ss_pred CCC
Q 030029 165 HPD 167 (184)
Q Consensus 165 ~~~ 167 (184)
.+-
T Consensus 85 ~~~ 87 (181)
T 3uo3_A 85 IDL 87 (181)
T ss_dssp CCT
T ss_pred CCc
Confidence 543
No 32
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.59 E-value=1.2e-16 Score=149.46 Aligned_cols=72 Identities=36% Similarity=0.735 Sum_probs=40.9
Q ss_pred cccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-ChhHHHHHHHHHHHHHHHcCChHHHHHHHhcCCCC
Q 030029 95 MQVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNP-DPEANKYFVEYISKAYQALTDPISRENFEKYGHPD 167 (184)
Q Consensus 95 ~~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~-~~~~~~~~~~~I~~AY~~L~d~~~R~~Yd~~g~~~ 167 (184)
....|||+||||+++||.++||+|||++++++|||+++ ++++.+.|.+ |++||++|+||.+|+.||+||..+
T Consensus 18 ~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~-i~~ay~~L~~~~~r~~yd~~~~~~ 90 (780)
T 3apo_A 18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLK-INRAYEVLKDEDLRKKYDKYGEKG 90 (780)
T ss_dssp -----CHHHHTCCTTCCHHHHHHHHCC------------------------CTHHHHHHSHHHHHHHTTC----
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHH-HHHHHHHHcChHHHHHHHhhcccc
Confidence 35689999999999999999999999999999999996 4556677765 999999999999999999999754
No 33
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.56 E-value=5.5e-16 Score=113.35 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=49.7
Q ss_pred ccCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCh--------hHHHHHHHHHHHHHHHcCChH
Q 030029 96 QVFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDP--------EANKYFVEYISKAYQALTDPI 155 (184)
Q Consensus 96 ~~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~--------~~~~~~~~~I~~AY~~L~d~~ 155 (184)
...|+|+|||++. ||.++||+|||++++++||||++++ .+.+.|.+ |++||++|+|+.
T Consensus 39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~-I~~AYevLsd~~ 104 (106)
T 3ag7_A 39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFEL-LQEAWDHFNTLG 104 (106)
T ss_dssp TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHH-HHHHHHHHTTTC
T ss_pred ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHH-HHHHHHHHcCcc
Confidence 4479999999996 9999999999999999999997631 24567765 999999999985
No 34
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.06 E-value=7.1e-11 Score=78.89 Aligned_cols=54 Identities=17% Similarity=0.112 Sum_probs=45.4
Q ss_pred cCCcccccCCCCC---CCHHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCCh
Q 030029 97 VFEPFSILGLEHG---ASDSDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDP 154 (184)
Q Consensus 97 ~~d~Y~iLgv~~~---as~~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~ 154 (184)
..+.|.||||+++ ++.++|+++||+|+..+|||+++++-.. ..|++|.+.|..+
T Consensus 3 ~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~----~ki~~Ake~l~~~ 59 (65)
T 2guz_B 3 LDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQ----SKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHH----HHHHHHHHHHHHH
Confidence 3567899999999 9999999999999999999998775432 2499999988644
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.02 E-value=2.5e-10 Score=96.68 Aligned_cols=65 Identities=38% Similarity=0.677 Sum_probs=53.8
Q ss_pred cCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCChh----HHHHHHHHHHHHHHHcCChHHHHHHHh
Q 030029 97 VFEPFSILGLEHGASDSDIKKAYRRLSIQYHPDKNPDPE----ANKYFVEYISKAYQALTDPISRENFEK 162 (184)
Q Consensus 97 ~~d~Y~iLgv~~~as~~eIkkayr~l~~~~HPDk~~~~~----~~~~~~~~I~~AY~~L~d~~~R~~Yd~ 162 (184)
..++|++||+...++.++|+++|+++++++|||+.++++ +.+.|. .|++||++|+||++|..||+
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~-~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFI-DIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHH-HHHHHHHHSSGGGGC-----
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHH-HHHHHHHHhCCHHHHHhccC
Confidence 458999999999999999999999999999999998653 555676 49999999999999999996
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=78.03 E-value=1.4 Score=40.07 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=32.0
Q ss_pred cCCcccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHH
Q 030029 97 VFEPFSILGLEHGASD--SDIKKAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQA 150 (184)
Q Consensus 97 ~~d~Y~iLgv~~~as~--~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~ 150 (184)
..|+|.+||++-+... .+|+++||++++..+++ .+++ .++..|+.+
T Consensus 628 ~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~-------~~r~-~lvd~a~~v 675 (681)
T 2pzi_A 628 KASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ-------RHRY-TLVDMANKV 675 (681)
T ss_dssp CCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH-------HHHH-HHHHHHHHH
T ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh-------HHHH-HHHHHhccc
Confidence 3459999999766544 66999999999966554 2333 246666654
No 37
>2lif_A Core protein P21; signal peptide, E1 envelope protein, transmemb membrane protein, viral protein; NMR {Hepatitis c virus jfh-1}
Probab=79.32 E-value=0.45 Score=25.69 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=17.3
Q ss_pred CCchHHHHHHHHhhhHHHHH
Q 030029 8 SQLFPIFILTIMALPLVPYT 27 (184)
Q Consensus 8 g~~f~~F~~t~~~~~lip~T 27 (184)
|--|+.|+++++++.++|..
T Consensus 3 gcsfsiFlLaLlscLt~Pas 22 (27)
T 2lif_A 3 GFPFSIFLLALLSCITVPVS 22 (27)
Confidence 55689999999999999974
No 38
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=57.90 E-value=28 Score=22.93 Aligned_cols=53 Identities=15% Similarity=0.251 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCh---hHHHHHHHHHHHHHHHcCCh-HHHHHHHhc
Q 030029 109 GASDSDIKKAYRRLSIQYHPDKNPDP---EANKYFVEYISKAYQALTDP-ISRENFEKY 163 (184)
Q Consensus 109 ~as~~eIkkayr~l~~~~HPDk~~~~---~~~~~~~~~I~~AY~~L~d~-~~R~~Yd~~ 163 (184)
..-...++..++.+.+...|...... ++...| + =..+|+.+.++ .++..|+.|
T Consensus 5 ~~r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~-e-~~~~fkav~~E~eR~~lFeeY 61 (77)
T 2cqn_A 5 SSGMKRKESAFKSMLKQAAPPIELDAVWEDIRERF-V-KEPAFEDITLESERKRIFKDF 61 (77)
T ss_dssp CCSHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHH-T-TSHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHH-c-cCHHHHhcCCHHHHHHHHHHH
Confidence 34567799999999999888765542 333333 2 35689999775 666677766
No 39
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=52.29 E-value=25 Score=22.87 Aligned_cols=53 Identities=21% Similarity=0.347 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHHcCC-hHHHHHHHhc
Q 030029 109 GASDSDIKKAYRRLSIQYHPDKNPD-PEANKYFVEYISKAYQALTD-PISRENFEKY 163 (184)
Q Consensus 109 ~as~~eIkkayr~l~~~~HPDk~~~-~~~~~~~~~~I~~AY~~L~d-~~~R~~Yd~~ 163 (184)
-+|.++.+++|++|....+-+-.-. +.....+. =..-|.+|.+ .++++.|+.|
T Consensus 11 ~~t~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~--~DpRY~al~~~~eRk~~F~ey 65 (71)
T 1uzc_A 11 WNTKEEAKQAFKELLKEKRVPSNASWEQAMKMII--NDPRYSALAKLSEKKQAFNAY 65 (71)
T ss_dssp CCSHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHH--TSGGGGGCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHc--cCccccccCCHHHHHHHHHHH
Confidence 4789999999999999886443322 22222111 1346888887 4566677766
No 40
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=38.35 E-value=73 Score=20.00 Aligned_cols=49 Identities=20% Similarity=0.336 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCChhHHHHHHHHH---HHHHHHcCC-hH-HHHHHHhcC
Q 030029 113 SDIKKAYRRLSIQYHPDKNPDPEANKYFVEYI---SKAYQALTD-PI-SRENFEKYG 164 (184)
Q Consensus 113 ~eIkkayr~l~~~~HPDk~~~~~~~~~~~~~I---~~AY~~L~d-~~-~R~~Yd~~g 164 (184)
+|-.++|.+|.+...-|-.=+ -.+... .| ..-|.+|.| |. +++.|+.|-
T Consensus 3 eEae~aF~~lL~~~~V~s~ws--weqamr-~i~i~DPrY~al~d~~~eRK~~Fe~Y~ 56 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWS--FSRIIS-ELGTRDPRYWMVDDDPLWKKEMFEKYL 56 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCC--HHHHHH-HHHHHCTHHHHSCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCc--HHHHHH-HhccCCCccccccCCHHHHHHHHHHHH
Confidence 577899999999876554332 112222 24 358999997 65 677888873
No 41
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=32.28 E-value=34 Score=24.82 Aligned_cols=38 Identities=18% Similarity=0.338 Sum_probs=22.5
Q ss_pred HHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHH
Q 030029 120 RRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISR 157 (184)
Q Consensus 120 r~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R 157 (184)
.+..++.|||..-+..+...+...++..++-|..+..+
T Consensus 40 yKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~ 77 (123)
T 2nqb_D 40 YTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASR 77 (123)
T ss_dssp HHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667789997666555544444455556655554444
No 42
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=30.95 E-value=63 Score=19.95 Aligned_cols=32 Identities=16% Similarity=0.279 Sum_probs=17.1
Q ss_pred CCccccCCCchHHHHHHHHhhhHHHHHHHHhc
Q 030029 1 MAATEENSQLFPIFILTIMALPLVPYTILKLC 32 (184)
Q Consensus 1 ~~~~de~g~~f~~F~~t~~~~~lip~T~~~l~ 32 (184)
|++-+++-..|.+.+..+.++.++.+..+.|+
T Consensus 3 ~~~~~~~vp~wiIi~svl~GLllL~li~~~Lw 34 (54)
T 2knc_A 3 MGSEERAIPIWWVLVGVLGGLLLLTILVLAMW 34 (54)
T ss_dssp TTCTTTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444556666555555555555555554
No 43
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=30.19 E-value=39 Score=24.63 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=22.6
Q ss_pred HHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHH
Q 030029 120 RRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISR 157 (184)
Q Consensus 120 r~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R 157 (184)
.+..++.|||..-+..+...+...++..++-|..+..+
T Consensus 43 yKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~ 80 (126)
T 1tzy_B 43 YKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASR 80 (126)
T ss_dssp HHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667789997666655554444455556555554444
No 44
>1r5q_A KAI A, circadian oscillation regulator; four-helix-bundle, gene regulation; 2.00A {Nostoc SP} SCOP: a.186.1.1
Probab=29.72 E-value=97 Score=21.50 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCChhHHHHH
Q 030029 112 DSDIKKAYRRLSIQYHPDKNPDPEANKYF 140 (184)
Q Consensus 112 ~~eIkkayr~l~~~~HPDk~~~~~~~~~~ 140 (184)
.++++..||.+.+.|-.+-..-.++-+.|
T Consensus 11 l~~L~~~YR~ill~YF~~d~~~n~~Id~f 39 (102)
T 1r5q_A 11 LQQLKSDYRQILLSYFTTDKALKEKIDKF 39 (102)
T ss_dssp HHHHHHHHHHHHHHTTSCC--CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 36789999999999876654444454554
No 45
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=25.62 E-value=36 Score=25.11 Aligned_cols=30 Identities=10% Similarity=0.226 Sum_probs=27.0
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 030029 101 FSILGLEHGASDSDIKKAYRRLSIQYHPDK 130 (184)
Q Consensus 101 Y~iLgv~~~as~~eIkkayr~l~~~~HPDk 130 (184)
+..+-|....+.+|++++=..+..++|||=
T Consensus 35 l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 35 LKTLAIGDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEECTTCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hcccccCcccCHHHHHHHHHHHHHhcCCCc
Confidence 677788888999999999999999999993
No 46
>1v2z_A Circadian clock protein KAIA homolog; all alpha, riken structural genomics/proteomics initiative, structural genomics; 1.80A {Thermosynechococcus elongatus} SCOP: a.186.1.1 PDB: 1q6a_A 1q6b_A 1suy_A 1sv1_A
Probab=25.09 E-value=1e+02 Score=21.71 Aligned_cols=29 Identities=17% Similarity=0.348 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCChhHHHHH
Q 030029 112 DSDIKKAYRRLSIQYHPDKNPDPEANKYF 140 (184)
Q Consensus 112 ~~eIkkayr~l~~~~HPDk~~~~~~~~~~ 140 (184)
.++++..||.+.+.|--|-..-.++-+.|
T Consensus 18 l~~L~~~YR~ill~YF~~d~~~nq~Id~F 46 (111)
T 1v2z_A 18 LDELRSIYRTIVLEYFNTDAKVNERIDEF 46 (111)
T ss_dssp HHHHHHHHHHHHHHTTCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 46799999999999876654434444444
No 47
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=23.95 E-value=2.1e+02 Score=27.29 Aligned_cols=20 Identities=10% Similarity=0.164 Sum_probs=12.6
Q ss_pred HHHHHhhhHHHHHHHHhccc
Q 030029 15 ILTIMALPLVPYTILKLCHA 34 (184)
Q Consensus 15 ~~t~~~~~lip~T~~~l~~~ 34 (184)
+.++++++++|..+..+.+.
T Consensus 495 ~s~~~~l~~~P~l~~~~~~~ 514 (1054)
T 3ne5_A 495 GAALLAIVVIPILMGYWIRG 514 (1054)
T ss_dssp HHHHHTTTTHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 34566778889888877543
No 48
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=22.50 E-value=87 Score=24.03 Aligned_cols=36 Identities=11% Similarity=0.302 Sum_probs=22.3
Q ss_pred HHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCCh
Q 030029 119 YRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDP 154 (184)
Q Consensus 119 yr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~ 154 (184)
-++..++-|||..-+.++.......++...+-|..+
T Consensus 9 i~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~e 44 (192)
T 2jss_A 9 IYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATE 44 (192)
T ss_dssp HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 356677889998777666555444455555555444
No 49
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=21.75 E-value=47 Score=22.92 Aligned_cols=23 Identities=13% Similarity=0.349 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCC
Q 030029 109 GASDSDIKKAYRRLSIQYHPDKN 131 (184)
Q Consensus 109 ~as~~eIkkayr~l~~~~HPDk~ 131 (184)
+-++.|++.+|+.|++.+|-...
T Consensus 67 Nks~nqV~~RFq~Lm~Lf~~~~~ 89 (95)
T 1ug2_A 67 NKTPVEVSHRFRELMQLFHTACE 89 (95)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCSS
T ss_pred cCCHHHHHHHHHHHHHHHHHHhc
Confidence 35789999999999999986553
No 50
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=20.83 E-value=1.9e+02 Score=18.98 Aligned_cols=53 Identities=19% Similarity=0.339 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCC-hhHHHHHHHHHHHHHHHcCC-hHHHHHHHhc
Q 030029 109 GASDSDIKKAYRRLSIQYHPDKNPD-PEANKYFVEYISKAYQALTD-PISRENFEKY 163 (184)
Q Consensus 109 ~as~~eIkkayr~l~~~~HPDk~~~-~~~~~~~~~~I~~AY~~L~d-~~~R~~Yd~~ 163 (184)
.+....++.+|+.|.+..+-+.... ..+...+ . =..+|.++.+ ..++..|+.|
T Consensus 13 ~~r~~k~~~~F~~mL~e~~I~~~s~W~~~~~~i-~-~Dpry~av~~~~eRe~lF~eY 67 (83)
T 2doe_A 13 KTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKV-E-SDPRYKAVDSSSMREDLFKQY 67 (83)
T ss_dssp SCCHHHHHHHHHHHHHHTTCCTTCCHHHHHHHH-T-TSTHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHH-c-cCHHHHhcCCHHHHHHHHHHH
Confidence 4677899999999998876333222 2222222 2 3458999987 4666777776
No 51
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=20.73 E-value=1.6e+02 Score=18.23 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHcCChHHHHHH
Q 030029 117 KAYRRLSIQYHPDKNPDPEANKYFVEYISKAYQALTDPISRENF 160 (184)
Q Consensus 117 kayr~l~~~~HPDk~~~~~~~~~~~~~I~~AY~~L~d~~~R~~Y 160 (184)
+.+|...+.-||+....+ . . +.|.+.|..|+++++ ..|
T Consensus 17 ~~~r~~~~~~~p~~~~~e-i---s-k~lg~~Wk~ls~~eK-~~y 54 (76)
T 1hry_A 17 RDQRRKMALENPRMRNSE-I---S-KQLGYQWKMLTEAEK-WPF 54 (76)
T ss_dssp HHHHHHHHHHCSCCSSSH-H---H-HHHHHHHHTCCHHHH-HHH
T ss_pred HHHHHHHHHHCcCCCHHH-H---H-HHHHhHHHhCCHHHH-HHH
Confidence 445555666688864332 1 2 348889999986654 444
Done!