Query 030030
Match_columns 184
No_of_seqs 105 out of 253
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 07:26:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11938 DUF3456: TLR4 regulat 100.0 4.5E-39 9.9E-44 254.7 9.8 143 22-165 1-151 (151)
2 KOG3782 Predicted membrane pro 100.0 6.8E-39 1.5E-43 254.1 10.7 167 13-181 15-189 (189)
3 KOG4052 Uncharacterized conser 100.0 9.9E-29 2.2E-33 196.0 7.5 132 19-161 30-187 (190)
4 KOG4260 Uncharacterized conser 99.9 1.6E-27 3.6E-32 202.7 7.9 129 1-167 4-134 (350)
5 smart00741 SapB Saposin (B) Do 96.4 0.0095 2.1E-07 39.9 5.3 75 24-164 2-76 (76)
6 PF05184 SapB_1: Saposin-like 94.0 0.12 2.6E-06 31.1 4.0 37 23-85 2-38 (39)
7 PF03489 SapB_2: Saposin-like 73.1 5.6 0.00012 23.2 3.1 30 124-158 1-30 (35)
8 PF07172 GRP: Glycine rich pro 73.0 2.2 4.7E-05 31.4 1.5 13 2-14 3-15 (95)
9 PF07172 GRP: Glycine rich pro 59.8 6.5 0.00014 28.9 1.8 20 4-23 9-28 (95)
10 KOG1340 Prosaposin [Lipid tran 49.0 41 0.0009 28.4 5.2 79 22-166 127-205 (218)
11 COG0295 Cdd Cytidine deaminase 47.3 8.8 0.00019 30.1 0.8 24 19-42 82-105 (134)
12 PF08194 DIM: DIM protein; In 35.9 31 0.00067 21.1 1.8 24 5-28 8-35 (36)
13 PRK08298 cytidine deaminase; V 35.3 23 0.00051 27.6 1.5 14 22-35 86-99 (136)
14 PRK10144 formate-dependent nit 35.3 30 0.00065 26.8 2.1 20 22-41 40-68 (126)
15 PRK12411 cytidine deaminase; P 34.9 17 0.00037 28.1 0.7 15 22-36 83-97 (132)
16 PF06064 Gam: Host-nuclease in 32.9 17 0.00037 26.5 0.4 49 130-180 23-71 (98)
17 KOG1340 Prosaposin [Lipid tran 32.7 1.2E+02 0.0026 25.7 5.4 85 13-165 27-111 (218)
18 PF11777 DUF3316: Protein of u 29.6 37 0.00081 25.3 1.8 18 1-18 1-18 (114)
19 PRK05578 cytidine deaminase; V 27.8 26 0.00057 27.0 0.7 16 21-36 82-97 (131)
20 PF08139 LPAM_1: Prokaryotic m 27.7 49 0.0011 18.6 1.6 11 2-12 8-18 (25)
21 PRK06848 hypothetical protein; 27.4 38 0.00083 26.4 1.6 14 22-35 94-107 (139)
22 TIGR02052 MerP mercuric transp 26.6 79 0.0017 20.6 2.9 11 1-11 1-11 (92)
23 PF13124 DUF3963: Protein of u 24.6 66 0.0014 19.7 1.9 16 129-144 7-22 (40)
24 COG3019 Predicted metal-bindin 24.3 93 0.002 24.8 3.2 19 19-37 30-48 (149)
25 PRK10053 hypothetical protein; 22.7 56 0.0012 25.4 1.7 14 1-14 1-14 (130)
26 PF15176 LRR19-TM: Leucine-ric 22.5 55 0.0012 24.5 1.5 34 5-43 25-59 (102)
27 KOG0833 Cytidine deaminase [Nu 22.1 58 0.0012 26.6 1.7 19 21-39 101-119 (173)
28 PF07213 DAP10: DAP10 membrane 20.7 56 0.0012 23.4 1.2 19 11-29 11-29 (79)
No 1
>PF11938 DUF3456: TLR4 regulator and MIR-interacting MSAP; InterPro: IPR021852 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 182 to 356 amino acids in length.
Probab=100.00 E-value=4.5e-39 Score=254.67 Aligned_cols=143 Identities=36% Similarity=0.594 Sum_probs=126.4
Q ss_pred CCcchhHHHHHHHHHHHhhcccccccccccc-ccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchhhccCCCcce
Q 030030 22 DEKCGACNAVAEELERGLSKEKTRNHLDLRH-RLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDW 100 (184)
Q Consensus 22 ~~kC~aC~alv~El~~~l~kt~~kk~i~~G~-Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~~~~~~~k~~ 100 (184)
+.+|+||+++|.||+++|++++|++++++|+ |+|++|+++++.++|++||+||+|+||+||++|.+|++++.++++++|
T Consensus 1 ~~~C~~C~~l~~el~~~l~~~~~~~~v~~~~~r~d~~g~~~~~~~~y~~SE~~l~EvlE~vC~~~~~Y~~~~~~~~~~~~ 80 (151)
T PF11938_consen 1 DLKCSACRALVEELEHRLAKTDPKKFVDVGGFRLDPDGERKKKKIPYARSELRLVEVLENVCEKMKDYVLHKDKSTGKRV 80 (151)
T ss_pred CCcchHHHHHHHHHHHHHHHhCCcCceeccccccccccccccccCccccchhHHHHHHHHHccCcccceeeecCCCCceE
Confidence 4799999999999999999999999999998 999999999999999999999999999999999999999998888776
Q ss_pred EEeeecCc---cch---hh-HHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhccccccCcCC
Q 030030 101 IRVDNWEN---LSI---SK-QEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCN 165 (184)
Q Consensus 101 vrv~~~~~---~~~---~~-~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~~~~~C~ 165 (184)
.+..+..+ ... ++ ++.++++++|+++|++|||+|||+|++||++.+.+ ++|.+|||++++++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~C~~ilEe~Ed~i~~~~~~~~~~-~~l~~~LC~~~~~~C~ 151 (151)
T PF11938_consen 81 YKRMSTTGGTNPELSEKDVKVDPSDENKRLKFYCERILEEYEDEIEEWFFSEQDE-DDLEEWLCSETSKVCC 151 (151)
T ss_pred EEecCCCcCcccccccccceeecHHHHhHHHHHHHHHHHHhHHHHHHHHHhcCCc-cCHHHHhhhcccccCC
Confidence 55542221 111 22 33478999999999999999999999999999865 7999999999999997
No 2
>KOG3782 consensus Predicted membrane protein, contains type II SA sequence [General function prediction only]
Probab=100.00 E-value=6.8e-39 Score=254.11 Aligned_cols=167 Identities=25% Similarity=0.486 Sum_probs=149.2
Q ss_pred HhhhccccCCCcchhHHHHHHHHHHHhhcccccccccccc-ccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchh
Q 030030 13 AIFSVAASIDEKCGACNAVAEELERGLSKEKTRNHLDLRH-RLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLE 91 (184)
Q Consensus 13 ~~~~~~~~~~~kC~aC~alv~El~~~l~kt~~kk~i~~G~-Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~ 91 (184)
.+..+..+..++|+||+++|+||+++|++++|+|++++|+ |+||+|+|..++|+|+|||+||+|+||.+|++|++|..+
T Consensus 15 g~~~a~~S~~~~CgaC~alVtelE~~IA~vDPkK~i~vgsFR~~p~G~q~~~kV~yarSE~hLTEl~E~iCd~mk~Y~~~ 94 (189)
T KOG3782|consen 15 GAGYAFTSREVKCGACKALVTELEEAIAKVDPKKMIDVGSFRLDPQGNQISKKVRYARSEMHLTELMEKICDKMKDYLKA 94 (189)
T ss_pred hhhhhhhccccccchHHHHHHHHHHHHHhcCchheeeecceEECCCCCeeeeeeccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4477788888999999999999999999999999999997 999999999999999999999999999999999999998
Q ss_pred hccCCCc-ceEEeee---cCccc---hhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhccccccCcC
Q 030030 92 KIDSTRQ-DWIRVDN---WENLS---ISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHC 164 (184)
Q Consensus 92 ~~~~~~k-~~vrv~~---~~~~~---~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~~~~~C 164 (184)
.+++++| .||++.. +++.. -++++ ++.++.|.++|+.+||++++.+.++|.+.... .++.-..|.....+|
T Consensus 95 ~~~stgk~~yv~~~~~~~~~~es~l~~~~~d-~d~n~~l~~~c~evle~~~~~~~~~f~~e~~g-~~~~~~~~~~~~~~~ 172 (189)
T KOG3782|consen 95 TYKSTGKFTYVKMIINGQMNPESSLVDFVQD-GDLNKSLGHFCNEVLEDNDEIFVKAFQAEELG-NDLDIKICSEQASYC 172 (189)
T ss_pred hccCCCceEEEEEeccCCCCCcccccccccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CccceeeeeccCCcC
Confidence 8888886 5999873 33221 24555 59999999999999999999999999888764 678889999999999
Q ss_pred CCCCcccccccccccCC
Q 030030 165 NKSSGSQRLEYYSNESY 181 (184)
Q Consensus 165 ~~~~~~~~~~~~~~~~~ 181 (184)
.+.++.++++++|+|++
T Consensus 173 ~~~~~~~~sd~~d~e~~ 189 (189)
T KOG3782|consen 173 DESPVQEESDFDDKEEL 189 (189)
T ss_pred CCccccccccCCccccC
Confidence 99999999999998864
No 3
>KOG4052 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=9.9e-29 Score=196.00 Aligned_cols=132 Identities=27% Similarity=0.503 Sum_probs=113.7
Q ss_pred ccCCCcchhHHHHHHHHHHHhhcc-cccccccccc-ccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchhhccCC
Q 030030 19 ASIDEKCGACNAVAEELERGLSKE-KTRNHLDLRH-RLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDST 96 (184)
Q Consensus 19 ~~~~~kC~aC~alv~El~~~l~kt-~~kk~i~~G~-Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~~~~~~ 96 (184)
...|.||+||+.++.||+.++.+| +.+.+++.|+ ++| +.. ++.++|.+||+||.|++|+||+++.+|+.|+.+++
T Consensus 30 vrlpsKCEvCkllatEleA~l~eTGks~eVi~~gy~~ld--~k~-k~~v~Y~rselrl~E~tEniCer~ley~~hker~g 106 (190)
T KOG4052|consen 30 VRLPSKCEVCKLLATELEAKLEETGKSKEVIEHGYTRLD--FKF-KWFVLYQRSELRLAEITENICERFLEYKIHKERTG 106 (190)
T ss_pred ccccchhHHHHHHHHHHHHHHhhcCCcceeeeeceeeec--cee-eeeeeeehhHhHHHHHHHHHHHHHHHHhhhccCcc
Confidence 367799999999999999999999 7788889897 655 232 35599999999999999999999999999999998
Q ss_pred Ccce------------------EEee------ecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCch
Q 030030 97 RQDW------------------IRVD------NWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDV 152 (184)
Q Consensus 97 ~k~~------------------vrv~------~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl 152 (184)
.-|| +||. .||.| +.+...|+.+|++++|+|||-|++||++++.+ .+|
T Consensus 107 s~rfaraqsqt~~tlk~l~~KGvKvdlgip~elwd~p-------svevt~lk~qce~lleeyed~i~ewyf~hq~e-~~l 178 (190)
T KOG4052|consen 107 SERFARAQSQTIETLKGLVEKGVKVDLGIPFELWDQP-------SVEVTALKQQCESLLEEYEDLIEEWYFNHQSE-EDL 178 (190)
T ss_pred hhHHHHHhhhHHHHHHHHHHcCceeeeCCchHhhcCC-------cHHHHHHHHHHHHHHHHHHHHHHHHHhccccH-HHH
Confidence 7554 4443 58877 57788899999999999999999999999874 699
Q ss_pred hhhcccccc
Q 030030 153 SKVLCEDLS 161 (184)
Q Consensus 153 ~~~LC~~~~ 161 (184)
+++||..+.
T Consensus 179 ~k~lce~hv 187 (190)
T KOG4052|consen 179 FKQLCERHV 187 (190)
T ss_pred HHHHHHhcc
Confidence 999998653
No 4
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=1.6e-27 Score=202.71 Aligned_cols=129 Identities=26% Similarity=0.418 Sum_probs=110.1
Q ss_pred ChhHHHHHHHHHHh-hhc-cccCCCcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHH
Q 030030 1 MAKSVTCLVITLAI-FSV-AASIDEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELL 78 (184)
Q Consensus 1 ~~~~~~~l~~~l~~-~~~-~~~~~~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~Evl 78 (184)
|.|+|++|+++|++ +++ ...++.+|.+|+.||..|..+|.+|.. +++..|+ ++|+++++.+|+.||+||+|||
T Consensus 4 ~~r~L~~L~lll~a~~~pe~~~kp~pCrtC~~LVssFn~GlerT~r-~hfaGGd----TAWEEknL~kYk~SE~RLvEil 78 (350)
T KOG4260|consen 4 PSRILLLLALLLGAPPQPEVTIKPEPCRTCRGLVSSFNEGLERTAR-HHFAGGD----TAWEEKNLSKYKTSETRLVEIL 78 (350)
T ss_pred hhHHHHHHHHHhcCCCCccCCCCCCCchHHHHHHHHHHHHHHHHhh-hccCCCc----hhhhhhhhhhccccchhHHHHH
Confidence 47888999988855 444 334589999999999999999999984 4444333 4799999999999999999999
Q ss_pred HHhhhcccccchhhccCCCcceEEeeecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhccc
Q 030030 79 DGLCDKMQDYTLEKIDSTRQDWIRVDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCE 158 (184)
Q Consensus 79 E~vC~~m~~Y~~~~~~~~~k~~vrv~~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~ 158 (184)
|+||++..- -.+.|.|++++|.+|+.|++||++.|.+.+||++|||+
T Consensus 79 EglCsks~~---------------------------------~n~DfeCh~lle~hEellE~w~~hkq~e~Pdl~~WlCv 125 (350)
T KOG4260|consen 79 EGLCSKSSL---------------------------------PNMDFECHTLLEKHEELLEEWWYHKQHESPDLFNWLCV 125 (350)
T ss_pred HHhhhccCC---------------------------------CCCChHHHHHHHHHHHHHHHHHHHhhcCCchHHhHhhh
Confidence 999998421 11459999999999999999999999999999999999
Q ss_pred cccCcCCCC
Q 030030 159 DLSKHCNKS 167 (184)
Q Consensus 159 ~~~~~C~~~ 167 (184)
++.++|||.
T Consensus 126 dqLkvCCp~ 134 (350)
T KOG4260|consen 126 DQLKVCCPD 134 (350)
T ss_pred hhheeccCC
Confidence 999999985
No 5
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=96.39 E-value=0.0095 Score=39.88 Aligned_cols=75 Identities=29% Similarity=0.632 Sum_probs=58.0
Q ss_pred cchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchhhccCCCcceEEe
Q 030030 24 KCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWIRV 103 (184)
Q Consensus 24 kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~~~~~~~k~~vrv 103 (184)
.|..|+.++..++..+.+... +..+.+.++.+|+.+.
T Consensus 2 ~C~~C~~~v~~~~~~~~~~~~--------------------------~~~i~~~~~~~C~~~~----------------- 38 (76)
T smart00741 2 LCELCEDVVKQLENLLKDNKT--------------------------EEEIKKALEKVCKKLP----------------- 38 (76)
T ss_pred cChHHHHHHHHHHHHHHhchH--------------------------HHHHHHHHHHHHHHcC-----------------
Confidence 599999999999999886431 2356689999999864
Q ss_pred eecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhccccccCcC
Q 030030 104 DNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHC 164 (184)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~~~~~C 164 (184)
......|..+++.|-+.|...+.+.. + .+.+|... +.|
T Consensus 39 -----------------~~~~~~C~~~v~~~~~~ii~~i~~~~----~-p~~iC~~l-~~C 76 (76)
T smart00741 39 -----------------KSLSDQCKEFVDQYGPEIIDLLEQGL----D-PKDVCQKL-GLC 76 (76)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHhCC----C-HHHHHHHc-CCC
Confidence 12578999999999999999997752 2 57788654 444
No 6
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=94.00 E-value=0.12 Score=31.08 Aligned_cols=37 Identities=27% Similarity=0.631 Sum_probs=30.4
Q ss_pred CcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcc
Q 030030 23 EKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKM 85 (184)
Q Consensus 23 ~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m 85 (184)
..|.+|+.++..++..|.+. .++..+...|+++|+.+
T Consensus 2 ~~C~~C~~~v~~i~~~l~~~--------------------------~t~~~I~~~l~~~C~~l 38 (39)
T PF05184_consen 2 DECDICKFVVKEIEKLLKNN--------------------------KTEEEIKKALEKACNKL 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHST--------------------------CHHHHHHHHHHHHHTTS
T ss_pred CcchHHHHHHHHHHHHHHcC--------------------------ccHHHHHHHHHHHHhhC
Confidence 36999999999999999642 24567889999999875
No 7
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=73.07 E-value=5.6 Score=23.19 Aligned_cols=30 Identities=20% Similarity=0.530 Sum_probs=24.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhccc
Q 030030 124 STYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCE 158 (184)
Q Consensus 124 ~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~ 158 (184)
+..|..+|++|-..|..++.+.. + -+.+|.
T Consensus 1 ~~~C~~~V~~y~~~ii~~l~~~~----~-p~~iC~ 30 (35)
T PF03489_consen 1 SDECKNFVDQYGPQIIQLLEKQL----D-PQQICT 30 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS----T-HHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHhcC----C-hHHHHH
Confidence 35899999999999999998763 2 456775
No 8
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=73.04 E-value=2.2 Score=31.45 Aligned_cols=13 Identities=31% Similarity=0.271 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHHh
Q 030030 2 AKSVTCLVITLAI 14 (184)
Q Consensus 2 ~~~~~~l~~~l~~ 14 (184)
+|+||+|+|+||+
T Consensus 3 SK~~llL~l~LA~ 15 (95)
T PF07172_consen 3 SKAFLLLGLLLAA 15 (95)
T ss_pred hhHHHHHHHHHHH
Confidence 5777777766533
No 9
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=59.75 E-value=6.5 Score=28.89 Aligned_cols=20 Identities=25% Similarity=-0.011 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhhhccccCCC
Q 030030 4 SVTCLVITLAIFSVAASIDE 23 (184)
Q Consensus 4 ~~~~l~~~l~~~~~~~~~~~ 23 (184)
+.|+||++|++++..++.++
T Consensus 9 L~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 9 LGLLLAALLLISSEVAAREL 28 (95)
T ss_pred HHHHHHHHHHHHhhhhhHHh
Confidence 45777787777766655544
No 10
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=49.05 E-value=41 Score=28.39 Aligned_cols=79 Identities=20% Similarity=0.446 Sum_probs=56.5
Q ss_pred CCcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchhhccCCCcceE
Q 030030 22 DEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWI 101 (184)
Q Consensus 22 ~~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~~~~~~~k~~v 101 (184)
...|.+|+.+|.++...|.. .++ ++.-+..++...|.....
T Consensus 127 ~~~C~~C~~~V~~~~~~l~d-~~~------------------------~k~~~~~~~~~~ck~l~~-------------- 167 (218)
T KOG1340|consen 127 AGECELCRETVTEADTKLQD-KPK------------------------TKGKIVSLLLKSCKSLPN-------------- 167 (218)
T ss_pred ccccHHHHHHHHHHHHhccc-chh------------------------HHHHHHHHHHhhccCCcc--------------
Confidence 68999999999999988877 221 223445677888854333
Q ss_pred EeeecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhccccccCcCCC
Q 030030 102 RVDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCNK 166 (184)
Q Consensus 102 rv~~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~~~~~C~~ 166 (184)
....|..+|.+|.-.|+....+.-+. ...|+. .+.|++
T Consensus 168 ---------------------~~~~Ck~fV~~y~p~~i~~l~~~~~p-----~~vC~~-l~~C~~ 205 (218)
T KOG1340|consen 168 ---------------------YEQKCKQFVHEYGPQLITLLEEGLDP-----HDVCTA-LGACPP 205 (218)
T ss_pred ---------------------chhHHHHHHHHhccHHHHHHHHhhCc-----hhHHHH-hhcCCc
Confidence 35689999999999999888665322 336754 577873
No 11
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=47.28 E-value=8.8 Score=30.07 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=18.4
Q ss_pred ccCCCcchhHHHHHHHHHHHhhcc
Q 030030 19 ASIDEKCGACNAVAEELERGLSKE 42 (184)
Q Consensus 19 ~~~~~kC~aC~alv~El~~~l~kt 42 (184)
...-.+|++||.+..||-..-.+.
T Consensus 82 ~~~~sPCG~CRQ~i~Ef~~~d~~i 105 (134)
T COG0295 82 GKPVSPCGACRQVLAEFCGDDTLI 105 (134)
T ss_pred CCCcCCcHHHHHHHHHhcCCCceE
Confidence 445689999999999998554443
No 12
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=35.87 E-value=31 Score=21.08 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=11.7
Q ss_pred HHHHHHHHHhhhcc----ccCCCcchhH
Q 030030 5 VTCLVITLAIFSVA----ASIDEKCGAC 28 (184)
Q Consensus 5 ~~~l~~~l~~~~~~----~~~~~kC~aC 28 (184)
|+++++.|++++++ ..+.-+|..|
T Consensus 8 ~~l~lLal~~a~~~~pG~ViING~C~dC 35 (36)
T PF08194_consen 8 FALLLLALAAAVPATPGNVIINGKCIDC 35 (36)
T ss_pred HHHHHHHHHhcccCCCCeEEECceeeeC
Confidence 34444445555533 2344667666
No 13
>PRK08298 cytidine deaminase; Validated
Probab=35.32 E-value=23 Score=27.57 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=12.8
Q ss_pred CCcchhHHHHHHHH
Q 030030 22 DEKCGACNAVAEEL 35 (184)
Q Consensus 22 ~~kC~aC~alv~El 35 (184)
-.+|++||.+..||
T Consensus 86 ~sPCG~CRQvl~Ef 99 (136)
T PRK08298 86 LSPCGVCQERLFYW 99 (136)
T ss_pred cCCChhHHHHHHHh
Confidence 36999999999999
No 14
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=35.28 E-value=30 Score=26.83 Aligned_cols=20 Identities=20% Similarity=0.499 Sum_probs=12.7
Q ss_pred CCcchhHH---------HHHHHHHHHhhc
Q 030030 22 DEKCGACN---------AVAEELERGLSK 41 (184)
Q Consensus 22 ~~kC~aC~---------alv~El~~~l~k 41 (184)
.++|-+|. .+|..|...+.+
T Consensus 40 ~LRC~vCqnqsiadSna~iA~dmR~~Vr~ 68 (126)
T PRK10144 40 QLRCPQCQNQNLLESNAPVAVSMRHQVYS 68 (126)
T ss_pred cCCCCCCCCCChhhcCCHHHHHHHHHHHH
Confidence 48899997 455555555544
No 15
>PRK12411 cytidine deaminase; Provisional
Probab=34.90 E-value=17 Score=28.09 Aligned_cols=15 Identities=47% Similarity=0.744 Sum_probs=13.2
Q ss_pred CCcchhHHHHHHHHH
Q 030030 22 DEKCGACNAVAEELE 36 (184)
Q Consensus 22 ~~kC~aC~alv~El~ 36 (184)
..+|++||.+..||.
T Consensus 83 ~sPCG~CRQ~l~Ef~ 97 (132)
T PRK12411 83 VPPCGACRQVMVELC 97 (132)
T ss_pred cCCchhHHHHHHHhC
Confidence 479999999999984
No 16
>PF06064 Gam: Host-nuclease inhibitor protein Gam; InterPro: IPR009274 The Gam protein inhibits RecBCD nuclease and is found in both bacteria and bacteriophage [].; PDB: 2UV1_A 2UUZ_A.
Probab=32.94 E-value=17 Score=26.49 Aligned_cols=49 Identities=24% Similarity=0.256 Sum_probs=35.2
Q ss_pred hhhhhHHHHHHHHHhCCCCCCchhhhccccccCcCCCCCcccccccccccC
Q 030030 130 LLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCNKSSGSQRLEYYSNES 180 (184)
Q Consensus 130 ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~~~~~C~~~~~~~~~~~~~~~~ 180 (184)
.-||-|-++-+-+-++-+ -.+.+.||.+....+...-.++-.+||||-+
T Consensus 23 aREE~EaELADdlekglp--qh~~esLcid~Lqr~ga~K~ais~afDdDV~ 71 (98)
T PF06064_consen 23 AREEKEAELADDLEKGLP--QHLFESLCIDHLQRHGASKQAISRAFDDDVE 71 (98)
T ss_dssp HHHHHHHHHHHHHHTTS---CHHHHHHHHHHCGGGT--HHHHHHHHHC-HH
T ss_pred HHHHHHHHHHHHHHccCh--HHHHHHHHHHHHHhcccchhcchhhhccchh
Confidence 346678888888876654 3799999999999999887777777876643
No 17
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=32.70 E-value=1.2e+02 Score=25.66 Aligned_cols=85 Identities=20% Similarity=0.407 Sum_probs=60.4
Q ss_pred HhhhccccCCCcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchhh
Q 030030 13 AIFSVAASIDEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEK 92 (184)
Q Consensus 13 ~~~~~~~~~~~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~~ 92 (184)
..+-++......|.-|++++..+..-+.+-. .-+.+.++..|.+...
T Consensus 27 ~~v~~~~r~~~~C~lCe~~v~~i~~~~~~~~----------------------------~~i~~~l~~~Ckkl~~----- 73 (218)
T KOG1340|consen 27 ELVEPEQRSAEVCELCELVVKRIQEYLDKNQ----------------------------NELKEDLHAECKKLPK----- 73 (218)
T ss_pred HhhccccCccchhHHHHHHHHHHHHhhcccH----------------------------HHHHHHHHHHHHHhcc-----
Confidence 4455566678999999999998887766531 1345889999998642
Q ss_pred ccCCCcceEEeeecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhccccccCcCC
Q 030030 93 IDSTRQDWIRVDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCN 165 (184)
Q Consensus 93 ~~~~~k~~vrv~~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~~~~~C~ 165 (184)
...+.|..+|+.|=+.|+.-.... -.-+..|.. .+.|.
T Consensus 74 -----------------------------~~~~~C~~fv~~y~~~ii~~l~~~-----~~P~~vC~~-l~lC~ 111 (218)
T KOG1340|consen 74 -----------------------------AIPFECLSFVDSYLDPIIKELESG-----TAPEDVCKK-LNLCS 111 (218)
T ss_pred -----------------------------cchHHHHHHHHHhhhHHHHHHHhc-----cCHHHHHHH-hccCC
Confidence 245699999999999888877654 223456743 56666
No 18
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.59 E-value=37 Score=25.27 Aligned_cols=18 Identities=22% Similarity=0.060 Sum_probs=12.2
Q ss_pred ChhHHHHHHHHHHhhhcc
Q 030030 1 MAKSVTCLVITLAIFSVA 18 (184)
Q Consensus 1 ~~~~~~~l~~~l~~~~~~ 18 (184)
|++++|+++++|+++.+.
T Consensus 1 MKk~~ll~~~ll~s~~a~ 18 (114)
T PF11777_consen 1 MKKIILLASLLLLSSSAF 18 (114)
T ss_pred CchHHHHHHHHHHHHHHh
Confidence 888888876666554443
No 19
>PRK05578 cytidine deaminase; Validated
Probab=27.80 E-value=26 Score=26.99 Aligned_cols=16 Identities=31% Similarity=0.607 Sum_probs=13.8
Q ss_pred CCCcchhHHHHHHHHH
Q 030030 21 IDEKCGACNAVAEELE 36 (184)
Q Consensus 21 ~~~kC~aC~alv~El~ 36 (184)
.-.+|++||.+..||.
T Consensus 82 ~~sPCG~CRQ~l~e~~ 97 (131)
T PRK05578 82 PLSPCGRCRQVLAEFG 97 (131)
T ss_pred ccCccHHHHHHHHHhC
Confidence 3479999999999995
No 20
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=27.72 E-value=49 Score=18.55 Aligned_cols=11 Identities=18% Similarity=0.099 Sum_probs=6.1
Q ss_pred hhHHHHHHHHH
Q 030030 2 AKSVTCLVITL 12 (184)
Q Consensus 2 ~~~~~~l~~~l 12 (184)
+|+++.+++++
T Consensus 8 Kkil~~l~a~~ 18 (25)
T PF08139_consen 8 KKILFPLLALF 18 (25)
T ss_pred HHHHHHHHHHH
Confidence 66665555444
No 21
>PRK06848 hypothetical protein; Validated
Probab=27.44 E-value=38 Score=26.37 Aligned_cols=14 Identities=29% Similarity=0.783 Sum_probs=12.8
Q ss_pred CCcchhHHHHHHHH
Q 030030 22 DEKCGACNAVAEEL 35 (184)
Q Consensus 22 ~~kC~aC~alv~El 35 (184)
..+|++||.+..||
T Consensus 94 ~~PCG~CRQvl~E~ 107 (139)
T PRK06848 94 VSPCGACRELISDY 107 (139)
T ss_pred cCCChhhHHHHHHh
Confidence 57999999999998
No 22
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=26.62 E-value=79 Score=20.55 Aligned_cols=11 Identities=36% Similarity=0.329 Sum_probs=6.1
Q ss_pred ChhHHHHHHHH
Q 030030 1 MAKSVTCLVIT 11 (184)
Q Consensus 1 ~~~~~~~l~~~ 11 (184)
|++++.+++++
T Consensus 1 ~~~~~~~~~~~ 11 (92)
T TIGR02052 1 MKKLATLLALF 11 (92)
T ss_pred ChhHHHHHHHH
Confidence 66665555444
No 23
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=24.63 E-value=66 Score=19.74 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=13.9
Q ss_pred hhhhhhHHHHHHHHHh
Q 030030 129 RLLEETEDELAKLIKK 144 (184)
Q Consensus 129 ~ivEe~Ee~I~e~~~~ 144 (184)
.++|.|=|+|.+|+.+
T Consensus 7 ~fieryfddiqkwirn 22 (40)
T PF13124_consen 7 AFIERYFDDIQKWIRN 22 (40)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3789999999999976
No 24
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=24.28 E-value=93 Score=24.79 Aligned_cols=19 Identities=21% Similarity=0.606 Sum_probs=15.4
Q ss_pred ccCCCcchhHHHHHHHHHH
Q 030030 19 ASIDEKCGACNAVAEELER 37 (184)
Q Consensus 19 ~~~~~kC~aC~alv~El~~ 37 (184)
..+...|+-|..-++.|+.
T Consensus 30 vyksPnCGCC~~w~~~mk~ 48 (149)
T COG3019 30 VYKSPNCGCCDEWAQHMKA 48 (149)
T ss_pred EEeCCCCccHHHHHHHHHh
Confidence 3456999999999988873
No 25
>PRK10053 hypothetical protein; Provisional
Probab=22.69 E-value=56 Score=25.40 Aligned_cols=14 Identities=21% Similarity=0.209 Sum_probs=10.2
Q ss_pred ChhHHHHHHHHHHh
Q 030030 1 MAKSVTCLVITLAI 14 (184)
Q Consensus 1 ~~~~~~~l~~~l~~ 14 (184)
|+|+++.+|+++++
T Consensus 1 MKK~~~~~~~~~~s 14 (130)
T PRK10053 1 MKLQAIALASFLVM 14 (130)
T ss_pred CcHHHHHHHHHHHH
Confidence 88888777776553
No 26
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=22.48 E-value=55 Score=24.50 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhhccccCCCcchhHHHHHHHH-HHHhhccc
Q 030030 5 VTCLVITLAIFSVAASIDEKCGACNAVAEEL-ERGLSKEK 43 (184)
Q Consensus 5 ~~~l~~~l~~~~~~~~~~~kC~aC~alv~El-~~~l~kt~ 43 (184)
+..|.++|+++ .-.||.+|+..-..- .+.|.+++
T Consensus 25 ~~al~~SlLIa-----laaKC~~~~k~~~SY~H~rL~e~e 59 (102)
T PF15176_consen 25 VTALVTSLLIA-----LAAKCPVWYKYLASYRHHRLPETE 59 (102)
T ss_pred HHHHHHHHHHH-----HHHHhHHHHHHHhccccccCCccc
Confidence 34444445554 446999998654443 34455553
No 27
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism]
Probab=22.08 E-value=58 Score=26.65 Aligned_cols=19 Identities=21% Similarity=0.578 Sum_probs=17.0
Q ss_pred CCCcchhHHHHHHHHHHHh
Q 030030 21 IDEKCGACNAVAEELERGL 39 (184)
Q Consensus 21 ~~~kC~aC~alv~El~~~l 39 (184)
-..+|++||.+..||....
T Consensus 101 f~tPCG~CRQfl~Ef~~~~ 119 (173)
T KOG0833|consen 101 FTTPCGVCRQFLREFGNAS 119 (173)
T ss_pred cCCCcHHHHHHHHHHhhcc
Confidence 5799999999999999874
No 28
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=20.66 E-value=56 Score=23.38 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=12.4
Q ss_pred HHHhhhccccCCCcchhHH
Q 030030 11 TLAIFSVAASIDEKCGACN 29 (184)
Q Consensus 11 ~l~~~~~~~~~~~kC~aC~ 29 (184)
.|+..+++...+-.|..|-
T Consensus 11 LLL~VaAaq~~~gscs~C~ 29 (79)
T PF07213_consen 11 LLLPVAAAQTQPGSCSGCY 29 (79)
T ss_pred HHHHHhhhcCCCCCCCCcc
Confidence 3444455666777899994
Done!