Query 030030
Match_columns 184
No_of_seqs 105 out of 253
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 11:44:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030030.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030030hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nkl_A NK-lysin; saposin fold, 97.6 0.00019 6.4E-09 49.6 7.0 77 23-166 2-78 (78)
2 2gtg_A Proactivator polypeptid 97.5 0.00024 8.2E-09 49.0 6.6 79 22-166 4-82 (83)
3 3bqp_A Proactivator polypeptid 97.4 0.00057 1.9E-08 46.4 7.4 78 22-165 2-79 (80)
4 2js9_A Saposin-like protein fa 97.4 0.00032 1.1E-08 50.9 5.8 82 18-164 17-98 (99)
5 1of9_A Pore-forming peptide am 97.3 0.0003 1E-08 48.4 5.3 72 22-159 2-73 (77)
6 1l9l_A Granulysin; saposin fol 97.3 0.00054 1.9E-08 47.1 5.7 71 23-159 2-72 (74)
7 2qyp_A Proactivator polypeptid 97.1 0.0012 4.1E-08 46.4 6.5 81 21-167 4-84 (91)
8 1n69_A Saposin B; lipid bindin 96.9 0.0026 8.8E-08 43.9 6.7 77 22-165 3-80 (81)
9 4ddj_A Saposin-A, protein A; s 96.8 0.0026 8.8E-08 43.8 5.8 81 21-165 2-82 (83)
10 3rfi_A Asp; PSI, saposin, hydr 85.7 0.76 2.6E-05 33.1 3.8 39 21-85 69-107 (108)
11 3s64_A AC-SLP-1, saposin-like 78.4 2.2 7.7E-05 29.9 3.8 69 20-147 8-76 (87)
12 3rfi_A Asp; PSI, saposin, hydr 43.6 16 0.00056 25.8 2.8 40 122-167 6-45 (108)
13 3dmo_A Cytidine deaminase; str 43.0 6.9 0.00024 29.6 0.7 15 22-36 93-107 (138)
14 2zzs_A Cytochrome C554; C-type 38.0 8.9 0.0003 25.8 0.6 7 24-30 33-39 (103)
15 3mpz_A Cytidine deaminase; ssg 33.3 12 0.00041 28.6 0.7 15 22-36 105-119 (150)
16 2d30_A Cytidine deaminase; pur 32.6 13 0.00043 28.1 0.7 15 22-36 92-106 (141)
17 3oj6_A Blasticidin-S deaminase 32.6 19 0.00064 27.7 1.7 15 22-36 109-123 (158)
18 3r2n_A Cytidine deaminase; str 31.5 14 0.00046 27.8 0.7 15 22-36 90-104 (138)
19 1c2n_A Cytochrome C2; electron 25.6 10 0.00036 27.6 -0.8 7 24-30 33-39 (137)
20 2wfu_B Probable insulin-like p 23.9 36 0.0012 18.4 1.4 13 72-84 8-20 (26)
21 2z3g_A Blasticidin-S deaminase 21.0 42 0.0014 24.6 1.7 15 22-36 85-99 (130)
No 1
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=97.62 E-value=0.00019 Score=49.56 Aligned_cols=77 Identities=21% Similarity=0.450 Sum_probs=60.8
Q ss_pred CcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchhhccCCCcceEE
Q 030030 23 EKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWIR 102 (184)
Q Consensus 23 ~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~~~~~~~k~~vr 102 (184)
..|.+|+.+|..++.-+.+-. +|..+...|+++|+.+..
T Consensus 2 ~~C~~C~~iv~~ve~~l~~~~--------------------------t~~~I~~~l~~~C~~lp~--------------- 40 (78)
T 1nkl_A 2 YFCESCRKIIQKLEDMVGPQP--------------------------NEDTVTQAASQVCDKLKI--------------- 40 (78)
T ss_dssp CHHHHHHHHHHHHHHHHCSSC--------------------------CHHHHHHHHHHHHHHSCS---------------
T ss_pred CcchHHHHHHHHHHHHHHcCC--------------------------cHHHHHHHHHHHHhhCch---------------
Confidence 579999999999999886532 345677999999998642
Q ss_pred eeecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhccccccCcCCC
Q 030030 103 VDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCNK 166 (184)
Q Consensus 103 v~~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~~~~~C~~ 166 (184)
+...|..+|++|-+.|++++.++.. -+.+|.. .+.|.+
T Consensus 41 --------------------~~~~C~~~V~~y~~~iI~~l~~~~~-----P~~IC~~-l~lC~~ 78 (78)
T 1nkl_A 41 --------------------LRGLCKKIMRSFLRRISWDILTGKK-----PQAICVD-IKICKE 78 (78)
T ss_dssp --------------------THHHHHHHHHHHHHHHHHHHHTTCC-----HHHHHHH-TTCSCC
T ss_pred --------------------hHHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHhc-cCCCCc
Confidence 5789999999999999999987632 2668864 677753
No 2
>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A
Probab=97.53 E-value=0.00024 Score=49.02 Aligned_cols=79 Identities=16% Similarity=0.516 Sum_probs=62.0
Q ss_pred CCcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchhhccCCCcceE
Q 030030 22 DEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWI 101 (184)
Q Consensus 22 ~~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~~~~~~~k~~v 101 (184)
...|..|+.++..++..|.+-. ++..+.+.|+++|+.+..
T Consensus 4 ~~~C~~C~~~v~~i~~~l~~~~--------------------------t~~~I~~~l~~~C~~lp~-------------- 43 (83)
T 2gtg_A 4 DVYCEVCEFLVKEVTKLIDNNK--------------------------TEKEILDAFDKMCSKLPK-------------- 43 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTC--------------------------CHHHHHHHHHHHTTSSCH--------------
T ss_pred CCcChhHHHHHHHHHHHHHcCC--------------------------cHHHHHHHHHHHHHHCCC--------------
Confidence 5689999999999999986521 345788999999997632
Q ss_pred EeeecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhccccccCcCCC
Q 030030 102 RVDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCNK 166 (184)
Q Consensus 102 rv~~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~~~~~C~~ 166 (184)
.+...|..+|+.|-+.|.+++.++. --+.+|. ..+.|.+
T Consensus 44 --------------------~~~~~C~~~V~~y~~~ii~~l~~~~-----~P~~iC~-~l~lC~~ 82 (83)
T 2gtg_A 44 --------------------SLSEECQEVVDTYGSSILSILLEEV-----SPELVCS-MLHLCSG 82 (83)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHTTC-----CHHHHHH-HTTSCC-
T ss_pred --------------------cchhHHHHHHHHHHHHHHHHHHHCC-----CHHHHHH-hcCCCCC
Confidence 2678999999999999999998652 2356798 5688864
No 3
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A
Probab=97.43 E-value=0.00057 Score=46.40 Aligned_cols=78 Identities=21% Similarity=0.432 Sum_probs=61.0
Q ss_pred CCcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchhhccCCCcceE
Q 030030 22 DEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWI 101 (184)
Q Consensus 22 ~~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~~~~~~~k~~v 101 (184)
+..|.+|+.+|..++..|++- .++..+.+.++++|+.+..
T Consensus 2 ~~~C~~C~~~v~~i~~~l~~~--------------------------~t~~~I~~~l~~~C~~lp~-------------- 41 (80)
T 3bqp_A 2 GGFCEVCKKLVGYLDRNLEKN--------------------------STKQEILAALEKGCSFLPD-------------- 41 (80)
T ss_dssp CTTHHHHHHHHHHHHHHSCTT--------------------------CCHHHHHHHHHHHGGGSCG--------------
T ss_pred cCcchhHHHHHHHHHHHHHcc--------------------------cHHHHHHHHHHHHHHhCCC--------------
Confidence 467999999999999988742 1345788999999998642
Q ss_pred EeeecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhccccccCcCC
Q 030030 102 RVDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCN 165 (184)
Q Consensus 102 rv~~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~~~~~C~ 165 (184)
.+...|..+|+.|-..|.+++.++. + -+.+|. ..+.|.
T Consensus 42 --------------------~~~~~C~~~v~~y~~~ii~~l~~~~----~-P~~iC~-~l~~C~ 79 (80)
T 3bqp_A 42 --------------------PYQKQCDQFVAEYEPVLIEILVEVM----D-PSFVCL-KIGACP 79 (80)
T ss_dssp --------------------GGHHHHHHHHHHHHHHHHHHHTTCC----C-HHHHHH-HTTSSC
T ss_pred --------------------ccchhhHHHHHHHHHHHHHHHHHCC----C-HHHHHh-hcCCCC
Confidence 2578999999999999999997642 2 356796 458885
No 4
>2js9_A Saposin-like protein family protein 5; caenopore-5, saposin-like fold, antimicrobial protein; NMR {Caenorhabditis elegans} PDB: 2jsa_A
Probab=97.37 E-value=0.00032 Score=50.92 Aligned_cols=82 Identities=17% Similarity=0.315 Sum_probs=60.3
Q ss_pred cccCCCcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchhhccCCC
Q 030030 18 AASIDEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTR 97 (184)
Q Consensus 18 ~~~~~~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~~~~~~~ 97 (184)
.......|.+|+.+|..++..+++ +|..+...||++|+.+..-
T Consensus 17 ~~~~~~~C~~C~~vV~~ve~~ln~----------------------------t~~~I~~~L~~~C~~lp~~--------- 59 (99)
T 2js9_A 17 RGRSALSCQMCELVVKKYEGSADK----------------------------DANVIKKDFDAECKKLFHT--------- 59 (99)
T ss_dssp --CCSSTHHHHHHHHHHHTTTSSC----------------------------CHHHHHHHHHHHHHTGGGG---------
T ss_pred CCCCCCcchhHHHHHHHHHHHHHh----------------------------hHHHHHHHHHHHHHcCCCc---------
Confidence 445678999999999999887722 2335678999999986320
Q ss_pred cceEEeeecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhccccccCcC
Q 030030 98 QDWIRVDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHC 164 (184)
Q Consensus 98 k~~vrv~~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~~~~~C 164 (184)
.-.+...|..+|+.|-+.|++++.++.. -+.+|. ..+.|
T Consensus 60 ----------------------ipf~~~~C~~~V~~y~~~II~~L~~~~~-----P~~VC~-~L~lC 98 (99)
T 2js9_A 60 ----------------------IPFGTRECDHYVNSKVDPIIHELEGGTA-----PKDVCT-KLNEC 98 (99)
T ss_dssp ----------------------STTHHHHHHTTTTTTHHHHHHHHHHTCC-----TTHHHH-HTTCC
T ss_pred ----------------------chHHHHHHHHHHHHHHHHHHHHHHhCCC-----HHHHHh-hcCCC
Confidence 0015789999999999999999988742 255886 56666
No 5
>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR {Entamoeba histolytica} SCOP: a.64.1.4
Probab=97.35 E-value=0.0003 Score=48.42 Aligned_cols=72 Identities=25% Similarity=0.499 Sum_probs=55.6
Q ss_pred CCcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchhhccCCCcceE
Q 030030 22 DEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWI 101 (184)
Q Consensus 22 ~~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~~~~~~~k~~v 101 (184)
+..|.+|+.+|..++.-+.+- . |..+...||++|+.+.
T Consensus 2 ~~~C~~C~~vv~~ve~~l~~n-t--------------------------~~~I~~~l~~~C~~lp--------------- 39 (77)
T 1of9_A 2 EILCNLCTGLINTLENLLTTK-G--------------------------ADKVKDYISSLCNKAS--------------- 39 (77)
T ss_dssp CSSHHHHHHHHHHHHHHCSSS-C--------------------------SHHHHHHHHHHHTTCS---------------
T ss_pred CCcchhHHHHHHHHHHHHHHC-c--------------------------HHHHHHHHHHHHHcCC---------------
Confidence 568999999999999888652 1 2245688999999862
Q ss_pred EeeecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhcccc
Q 030030 102 RVDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCED 159 (184)
Q Consensus 102 rv~~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~ 159 (184)
+.+...|..+|++|...|++++.++.. -+.+|..
T Consensus 40 -------------------~~~~~~C~~~V~~y~~~iI~~l~~~~~-----P~~IC~~ 73 (77)
T 1of9_A 40 -------------------GFIATLCTKVLDFGIDKLIQLIEDKVD-----ANAICAK 73 (77)
T ss_dssp -------------------STTHHHHHHHHHHCHHHHHHHHHHTCC-----HHHHHHH
T ss_pred -------------------hHHHHHHHHHHHHHHHHHHHHHHhCCC-----HHHHHhh
Confidence 126789999999999999999988642 2456753
No 6
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=97.26 E-value=0.00054 Score=47.14 Aligned_cols=71 Identities=13% Similarity=0.355 Sum_probs=56.1
Q ss_pred CcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchhhccCCCcceEE
Q 030030 23 EKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDWIR 102 (184)
Q Consensus 23 ~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~~~~~~~k~~vr 102 (184)
..|.+|..+|.+++..| +- ++|..+.+.||++|+.+..
T Consensus 2 ~~C~~C~~~v~~le~~l-~n--------------------------~Te~~I~~~L~~vC~~l~~--------------- 39 (74)
T 1l9l_A 2 RDYRTCLTIVQKLKKMV-DK--------------------------PTQRSVSNAATRVCRTGRS--------------- 39 (74)
T ss_dssp HHHHHHHHHHHHHHHHC-SS--------------------------CCHHHHHHHHHHGGGSSCH---------------
T ss_pred CCChHHHHHHHHHHHHh-cc--------------------------cCHHHHHHHHHHHHHhCCh---------------
Confidence 46999999999999998 32 2345678999999998742
Q ss_pred eeecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhcccc
Q 030030 103 VDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCED 159 (184)
Q Consensus 103 v~~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~ 159 (184)
+++..|..||+.|=..|.+++.++.. -+.+|.+
T Consensus 40 -------------------~~~~~C~~~V~~y~~~Ii~~L~~~~~-----P~~IC~~ 72 (74)
T 1l9l_A 40 -------------------RWRDVCRNFMRRYQSRVIQGLVAGET-----AQQICED 72 (74)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHHTTCC-----HHHHHGG
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHhCCC-----HHHHHhh
Confidence 26889999999999999999987632 2456654
No 7
>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A
Probab=97.13 E-value=0.0012 Score=46.41 Aligned_cols=81 Identities=15% Similarity=0.488 Sum_probs=61.5
Q ss_pred CCCcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchhhccCCCcce
Q 030030 21 IDEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDW 100 (184)
Q Consensus 21 ~~~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~~~~~~~k~~ 100 (184)
.+..|..|+.+|..++..|.+- .++..+.+.|+++|+.+..
T Consensus 4 ~~~~C~~C~~vv~~i~~~l~~n--------------------------~t~~~I~~~l~~~C~~lp~------------- 44 (91)
T 2qyp_A 4 SDVYCEVCEFLVKEVTKLIDNN--------------------------KTEKEILDAFDKMCSKLPK------------- 44 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSH--------------------------HHHHHHHHHHHHHHHTSCS-------------
T ss_pred CCCcchHHHHHHHHHHHHHhcC--------------------------CcHHHHHHHHHHHHHHCCC-------------
Confidence 3567999999999999988642 2345788999999998642
Q ss_pred EEeeecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhccccccCcCCCC
Q 030030 101 IRVDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCNKS 167 (184)
Q Consensus 101 vrv~~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~~~~~C~~~ 167 (184)
.+...|..+|++|-..|++++.+.. + -+.+|. ..+.|.++
T Consensus 45 ---------------------~~~~~C~~~V~~y~~~ii~~l~~~~----~-P~~iC~-~l~lC~~~ 84 (91)
T 2qyp_A 45 ---------------------SLSEECQEVVDTYGSSILSILLEEV----S-PELVCS-MLHLCSGT 84 (91)
T ss_dssp ---------------------STTTTHHHHHHHHHHHHHHHHHHTC----C-HHHHHH-TTTCC---
T ss_pred ---------------------CcccchHHHHHHHHHHHHHHHHHcC----C-HHHHHh-hcCCCCCc
Confidence 1567999999999999999998753 1 356786 67788754
No 8
>1n69_A Saposin B; lipid binding protein, glycosphingolipid activator protein; HET: PEH; 2.20A {Homo sapiens} SCOP: a.64.1.3
Probab=96.93 E-value=0.0026 Score=43.86 Aligned_cols=77 Identities=14% Similarity=0.433 Sum_probs=59.6
Q ss_pred CCcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhh-HHHHHHHHHhhhcccccchhhccCCCcce
Q 030030 22 DEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSE-LRVVELLDGLCDKMQDYTLEKIDSTRQDW 100 (184)
Q Consensus 22 ~~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE-~rl~EvlE~vC~~m~~Y~~~~~~~~~k~~ 100 (184)
...|..|..+|..++..|.+-. +| ..+.+.|+++|+.+..
T Consensus 3 ~~~C~~C~~~V~~ve~~l~~n~--------------------------t~~~~I~~~l~~~C~~lp~------------- 43 (81)
T 1n69_A 3 GDVCQDCIQMVTDIQTAVRTNS--------------------------TFVQALVEHVKEECDRLGP------------- 43 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCT--------------------------THHHHHHHHHHHHGGGGCT-------------
T ss_pred CCcchHHHHHHHHHHHHHHhCC--------------------------cHHHHHHHHHHHHHHHcCc-------------
Confidence 4579999999999999887632 34 5688999999998742
Q ss_pred EEeeecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhccccccCcCC
Q 030030 101 IRVDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCN 165 (184)
Q Consensus 101 vrv~~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~~~~~C~ 165 (184)
.+...|..+|++|-..|..++.+. --+.+|. ..+.|.
T Consensus 44 ---------------------~~~~~C~~~V~~y~~~ii~~l~~~------~P~~iC~-~lglC~ 80 (81)
T 1n69_A 44 ---------------------GMADICKNYISQYSEIAIQMMMHM------QPKEICA-LVGFCD 80 (81)
T ss_dssp ---------------------THHHHHHHHHHHHHHHHHHHHTTS------CHHHHHH-HTTSCC
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHhcC------CHHHHHh-hcCCCC
Confidence 267899999999999999988632 1255797 458885
No 9
>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein, galactosylcera lauryldimethylamine-N-oxide, lipid, detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB: 2dob_A*
Probab=96.80 E-value=0.0026 Score=43.78 Aligned_cols=81 Identities=17% Similarity=0.357 Sum_probs=60.4
Q ss_pred CCCcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchhhccCCCcce
Q 030030 21 IDEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQDW 100 (184)
Q Consensus 21 ~~~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~~~~~~~k~~ 100 (184)
+...|.+|+.+|..++..+.+- .+|..+.+.++++|+.+..
T Consensus 2 ~~~~C~~C~~~v~~~~~~l~~n--------------------------~t~~~I~~~l~~~C~~lp~------------- 42 (83)
T 4ddj_A 2 GSLPCDICKDVVTAAGDMLKDN--------------------------ATEEEILVYLEKTCDWLPK------------- 42 (83)
T ss_dssp -CHHHHHHHHHHHHHHHHHHST--------------------------THHHHHHHHHHHHHTTSCT-------------
T ss_pred CCCcchHHHHHHHHHHHHHHcC--------------------------ccHHHHHHHHHHHHHhCCC-------------
Confidence 4567999999999999888652 2345788999999998642
Q ss_pred EEeeecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhccccccCcCC
Q 030030 101 IRVDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCN 165 (184)
Q Consensus 101 vrv~~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~~~~~C~ 165 (184)
..+...|..+|+.|=..|.+++.++- .--+.+|. ..+.|.
T Consensus 43 --------------------~~~~~~C~~~v~~y~~~ii~~l~~~~----~~p~~vC~-~l~lC~ 82 (83)
T 4ddj_A 43 --------------------PNMSASCKEIVDSYLPVILDIIKGEM----SRPGEVCS-ALNLCE 82 (83)
T ss_dssp --------------------THHHHHHHHHHHHHHHHHHHHHHHHH----TCHHHHHH-HTTSCC
T ss_pred --------------------chhhHHHHHHHHHHHHHHHHHHHHcc----CCHHHHHh-HcCCCC
Confidence 11478999999999999999997641 01245784 577775
No 10
>3rfi_A Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuberosum}
Probab=85.73 E-value=0.76 Score=33.10 Aligned_cols=39 Identities=26% Similarity=0.521 Sum_probs=33.0
Q ss_pred CCCcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcc
Q 030030 21 IDEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKM 85 (184)
Q Consensus 21 ~~~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m 85 (184)
.+..|.+|+.+|..++..|++- ++|..+.+.|+++|+++
T Consensus 69 ~~~~C~~Ce~~V~~ie~~L~~N--------------------------~Te~eI~~~l~k~C~~L 107 (108)
T 3rfi_A 69 EAPLCTACEMAVVWMQNQLKQE--------------------------GTKEKVLEYVNQLCEKI 107 (108)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSH--------------------------HHHHHHHHHHHHHHTTC
T ss_pred CCCcChhHHHHHHHHHHHHhcC--------------------------chHHHHHHHHHHHHhhC
Confidence 5678999999999999999763 35668889999999975
No 11
>3s64_A AC-SLP-1, saposin-like protein 1; lipid-binding, lipid binding protein; HET: CIT EPE; 2.30A {Ancylostoma caninum}
Probab=78.43 E-value=2.2 Score=29.92 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=49.3
Q ss_pred cCCCcchhHHHHHHHHHHHhhccccccccccccccCCcCcccccccchhhhhHHHHHHHHHhhhcccccchhhccCCCcc
Q 030030 20 SIDEKCGACNAVAEELERGLSKEKTRNHLDLRHRLDSKGQREGKLIDYRVSELRVVELLDGLCDKMQDYTLEKIDSTRQD 99 (184)
Q Consensus 20 ~~~~kC~aC~alv~El~~~l~kt~~kk~i~~G~Rld~~G~~~~k~i~Y~~SE~rl~EvlE~vC~~m~~Y~~~~~~~~~k~ 99 (184)
+..+.|.+|+++|..++.-+.+.. . + +-.-++..|.++-..
T Consensus 8 ~~~l~C~~C~~~Vk~~e~~i~~~~---------------~-e------------ie~~~d~~Ckk~~~~----------- 48 (87)
T 3s64_A 8 SNVIVCEICKMAVKLIVPEADKDL---------------D-Q------------LEKEFIQGCMTLIGW----------- 48 (87)
T ss_dssp CCTTHHHHHHHHHHHHTTCSSCSS---------------T-T------------HHHHHHHHHHHHHCS-----------
T ss_pred CCccchHHHHHHHHHHHHhccCCH---------------H-H------------HHHHHHHHHHHhccc-----------
Confidence 345889999999988776644311 0 0 226789999985210
Q ss_pred eEEeeecCccchhhHHHHhhhcchhhhhhhhhhhhHHHHHHHHHhCCC
Q 030030 100 WIRVDNWENLSISKQEAKAYANDISTYCGRLLEETEDELAKLIKKGSL 147 (184)
Q Consensus 100 ~vrv~~~~~~~~~~~~~~~~~~~l~~~C~~ivEe~Ee~I~e~~~~~~~ 147 (184)
.......|..+++.+=+.|+..+.++..
T Consensus 49 --------------------ip~a~k~C~~~v~~~~d~II~eLe~g~~ 76 (87)
T 3s64_A 49 --------------------LPYAEKECKALAKIEMGAIKTLLENGSA 76 (87)
T ss_dssp --------------------STTHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred --------------------CCchHHHHHHHHHHhHHHHHHHHHcCCC
Confidence 0115789999999999999999988754
No 12
>3rfi_A Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuberosum}
Probab=43.59 E-value=16 Score=25.84 Aligned_cols=40 Identities=15% Similarity=0.318 Sum_probs=32.0
Q ss_pred chhhhhhhhhhhhHHHHHHHHHhCCCCCCchhhhccccccCcCCCC
Q 030030 122 DISTYCGRLLEETEDELAKLIKKGSLRTGDVSKVLCEDLSKHCNKS 167 (184)
Q Consensus 122 ~l~~~C~~ivEe~Ee~I~e~~~~~~~~~~dl~~~LC~~~~~~C~~~ 167 (184)
.+...|..+|+.|=..|.+++.++. --+.+|. ..+.|...
T Consensus 6 ~~~~~C~~~V~~Y~~~ii~~l~~~~-----~P~~iC~-~lglC~~~ 45 (108)
T 3rfi_A 6 IVSMECKTIVSQYGEMIWDLLVSGV-----RPDQVCS-QAGLCFVD 45 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHH-HTTSSCC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC-----CHHHHHH-HcCCcCCC
Confidence 4788999999999999999987753 2366997 48899864
No 13
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=42.97 E-value=6.9 Score=29.55 Aligned_cols=15 Identities=47% Similarity=0.767 Sum_probs=13.6
Q ss_pred CCcchhHHHHHHHHH
Q 030030 22 DEKCGACNAVAEELE 36 (184)
Q Consensus 22 ~~kC~aC~alv~El~ 36 (184)
-.+|++||.+..||.
T Consensus 93 ~~PCG~CRQ~l~Ef~ 107 (138)
T 3dmo_A 93 IAPCGACRQVMIELG 107 (138)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhC
Confidence 489999999999995
No 14
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=38.00 E-value=8.9 Score=25.83 Aligned_cols=7 Identities=43% Similarity=1.232 Sum_probs=5.8
Q ss_pred cchhHHH
Q 030030 24 KCGACNA 30 (184)
Q Consensus 24 kC~aC~a 30 (184)
.|.+|-.
T Consensus 33 ~C~~CHg 39 (103)
T 2zzs_A 33 VCAACHG 39 (103)
T ss_dssp TTHHHHC
T ss_pred HHHhhcC
Confidence 7999974
No 15
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=33.25 E-value=12 Score=28.62 Aligned_cols=15 Identities=33% Similarity=0.508 Sum_probs=13.5
Q ss_pred CCcchhHHHHHHHHH
Q 030030 22 DEKCGACNAVAEELE 36 (184)
Q Consensus 22 ~~kC~aC~alv~El~ 36 (184)
-.+|++||.+..||.
T Consensus 105 ~~PCG~CRQ~L~Ef~ 119 (150)
T 3mpz_A 105 LMPCGRCRQVLLEHG 119 (150)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhC
Confidence 479999999999995
No 16
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=32.63 E-value=13 Score=28.07 Aligned_cols=15 Identities=47% Similarity=0.744 Sum_probs=13.2
Q ss_pred CCcchhHHHHHHHHH
Q 030030 22 DEKCGACNAVAEELE 36 (184)
Q Consensus 22 ~~kC~aC~alv~El~ 36 (184)
-.+|++||.+..||.
T Consensus 92 ~~PCG~CRQ~l~E~~ 106 (141)
T 2d30_A 92 VPPCGACRQVMVELC 106 (141)
T ss_dssp CCCCHHHHHHHHHHS
T ss_pred cCcCHHHHHHHHHhc
Confidence 469999999999993
No 17
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=32.61 E-value=19 Score=27.75 Aligned_cols=15 Identities=33% Similarity=0.756 Sum_probs=13.2
Q ss_pred CCcchhHHHHHHHHH
Q 030030 22 DEKCGACNAVAEELE 36 (184)
Q Consensus 22 ~~kC~aC~alv~El~ 36 (184)
-.+|++||.+..||.
T Consensus 109 ~~PCG~CRQvL~Ef~ 123 (158)
T 3oj6_A 109 LSPCGRCRQVLADLH 123 (158)
T ss_dssp ECCCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhC
Confidence 379999999999993
No 18
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=31.50 E-value=14 Score=27.84 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=13.6
Q ss_pred CCcchhHHHHHHHHH
Q 030030 22 DEKCGACNAVAEELE 36 (184)
Q Consensus 22 ~~kC~aC~alv~El~ 36 (184)
-.+|++||.+..||.
T Consensus 90 ~~PCG~CRQ~l~E~~ 104 (138)
T 3r2n_A 90 LMPCGRCRQLLYEHG 104 (138)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhC
Confidence 479999999999996
No 19
>1c2n_A Cytochrome C2; electron transport; HET: HEC; NMR {Rhodobacter capsulatus} SCOP: a.3.1.1
Probab=25.63 E-value=10 Score=27.57 Aligned_cols=7 Identities=43% Similarity=1.331 Sum_probs=5.5
Q ss_pred cchhHHH
Q 030030 24 KCGACNA 30 (184)
Q Consensus 24 kC~aC~a 30 (184)
.|.+|-.
T Consensus 33 ~C~~CH~ 39 (137)
T 1c2n_A 33 KCKTCHS 39 (137)
T ss_dssp HHTTTCC
T ss_pred hHHhhCC
Confidence 6999964
No 20
>2wfu_B Probable insulin-like peptide 5 B chain; cleavage on PAIR of basic residues, signaling protein; 1.85A {Drosophila melanogaster} PDB: 2wfv_B
Probab=23.85 E-value=36 Score=18.42 Aligned_cols=13 Identities=15% Similarity=0.432 Sum_probs=11.3
Q ss_pred HHHHHHHHHhhhc
Q 030030 72 LRVVELLDGLCDK 84 (184)
Q Consensus 72 ~rl~EvlE~vC~~ 84 (184)
.+|+|.|..||.+
T Consensus 8 ~~L~eaL~~vC~~ 20 (26)
T 2wfu_B 8 PALMDMLRVACPN 20 (26)
T ss_dssp HHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhc
Confidence 3799999999975
No 21
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=21.03 E-value=42 Score=24.56 Aligned_cols=15 Identities=33% Similarity=0.693 Sum_probs=13.1
Q ss_pred CCcchhHHHHHHHHH
Q 030030 22 DEKCGACNAVAEELE 36 (184)
Q Consensus 22 ~~kC~aC~alv~El~ 36 (184)
-.+|+.||.+..||.
T Consensus 85 ~~PCG~Crq~l~e~~ 99 (130)
T 2z3g_A 85 LSPCGRCRQVLLDLH 99 (130)
T ss_dssp ECCCHHHHHHHHHHC
T ss_pred cCcCHHHHHHHHHhC
Confidence 359999999999994
Done!