BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030031
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 92 VQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVI 126
+QN ++ F K VL++GCG G+ +FA GA +
Sbjct: 31 IQNKDL-FKDKIVLDVGCGTGILSMFAAKHGAKHV 64
>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
Length = 348
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 89 RLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIH 127
R +QN + F K VL++GCG G+ FA GA I+
Sbjct: 40 RAILQN-HTDFKDKIVLDVGCGSGILSFFAAQAGARKIY 77
>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|B Chain B, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|C Chain C, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|D Chain D, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
Length = 341
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 89 RLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIH 127
R +QN + F K VL++GCG G+ FA GA I+
Sbjct: 35 RAILQN-HTDFKDKIVLDVGCGSGILSFFAAQAGARKIY 72
>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|B Chain B, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|C Chain C, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|D Chain D, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3G|A Chain A, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480).
pdb|3B3G|B Chain B, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480)
Length = 341
Score = 30.4 bits (67), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 89 RLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIH 127
R +QN + F K VL++GCG G+ FA GA I+
Sbjct: 36 RAILQN-HTDFKDKIVLDVGCGSGILSFFAAQAGARKIY 73
>pdb|4AZW|A Chain A, Crystal Structure Of Monomeric Wbdd
Length = 471
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 67 VPGVYEG--GLKLWEGSIDLVKALRLDV---QNGNISFSGKR---VLELGCGHGLPGIFA 118
+P +Y+ G W+G RLD+ Q N+S + R VL+LGC G +
Sbjct: 25 LPEIYQTIFGHPEWDGDAARDCNQRLDLITEQYDNLSRALGRPLNVLDLGCAQGFFSLSL 84
Query: 119 CLEGAAV--IHFQEFNAEVLRYLTIPN 143
+GA + I FQ+ N V R L N
Sbjct: 85 ASKGATIVGIDFQQENINVCRALAEEN 111
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 93 QNGNISFSGKRVLELGCGHGLPGIFACLEGA 123
QN +I F K VL++GCG G+ +FA GA
Sbjct: 39 QNPHI-FKDKVVLDVGCGTGILSMFAAKAGA 68
>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|D Chain D, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|F Chain F, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|H Chain H, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V7E|A Chain A, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
pdb|2V7E|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
Length = 346
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 89 RLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIH 127
R +QN + F K VL++GCG G+ FA GA I+
Sbjct: 31 RAILQN-HTDFKDKIVLDVGCGSGILSFFAAQAGARKIY 68
>pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
pdb|3G5L|B Chain B, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
Length = 253
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 98 SFSGKRVLELGCGHGLPGIFACLEGAAVI 126
F+ K VL+LGCG G I+A GA +
Sbjct: 42 DFNQKTVLDLGCGFGWHCIYAAEHGAKKV 70
>pdb|4AX8|A Chain A, Medium Resolution Structure Of The Bifunctional Kinase-
Methyltransferase Wbdd
Length = 569
Score = 30.0 bits (66), Expect = 0.79, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 67 VPGVYEG--GLKLWEGSIDLVKALRLDV---QNGNISFSGKR---VLELGCGHGLPGIFA 118
+P +Y+ G W+G RLD+ Q N+S + R VL+LGC G +
Sbjct: 25 LPEIYQTIFGHPEWDGDAARDCNQRLDLITEQYDNLSRALGRPLNVLDLGCAQGFFSLSL 84
Query: 119 CLEGAAV--IHFQEFNAEVLRYLTIPN 143
+GA + I FQ+ N V R L N
Sbjct: 85 ASKGATIVGIDFQQENINVCRALAEEN 111
>pdb|4AZS|A Chain A, High Resolution (2.2 A) Crystal Structure Of Wbdd.
pdb|4AZT|A Chain A, Co-Crystal Structure Of Wbdd And Kinase Inhibitor
Ly294002.
pdb|4AZV|A Chain A, Co-crystal Structure Of Wbdd And Kinase Inhibitor
Gw435821x
Length = 569
Score = 30.0 bits (66), Expect = 0.79, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 67 VPGVYEG--GLKLWEGSIDLVKALRLDV---QNGNISFSGKR---VLELGCGHGLPGIFA 118
+P +Y+ G W+G RLD+ Q N+S + R VL+LGC G +
Sbjct: 25 LPEIYQTIFGHPEWDGDAARDCNQRLDLITEQYDNLSRALGRPLNVLDLGCAQGFFSLSL 84
Query: 119 CLEGAAV--IHFQEFNAEVLRYLTIPN 143
+GA + I FQ+ N V R L N
Sbjct: 85 ASKGATIVGIDFQQENINVCRALAEEN 111
>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain
Of Coactivator-Associated Arginine Methyl Transferase
I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered)
Length = 480
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 89 RLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIH 127
R +QN + F K VL++GCG G+ FA GA I+
Sbjct: 148 RAILQN-HTDFKDKIVLDVGCGSGILSFFAAQAGARKIY 185
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 93 QNGNISFSGKRVLELGCGHGLPGIFACLEGA 123
QN +I F K VL++GCG G+ +FA GA
Sbjct: 58 QNPHI-FKDKVVLDVGCGTGILSMFAAKAGA 87
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 46 LTLLKGRVSTKEVLGLPNSDLVPGVYEGGLKLWEGSIDLVKAL 88
L +L+G + N +V G Y+G +K+W DLV AL
Sbjct: 329 LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVW----DLVAAL 367
>pdb|1D9Q|A Chain A, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
pdb|1D9Q|B Chain B, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
pdb|1D9Q|C Chain C, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
pdb|1D9Q|D Chain D, Oxidized Pea Fructose-1,6-Bisphosphatase Form 1
pdb|1DCU|A Chain A, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
pdb|1DCU|B Chain B, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
pdb|1DCU|C Chain C, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
pdb|1DCU|D Chain D, Redox Signaling In The Chloroplast: Structure Of Oxidized
Pea Fructose-1,6-Bisphosphate Phosphatase
Length = 357
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 36 FTLEPVNLGELTLLKGRVSTKEVLGLPNSDLVPGVYEGGLKLWE 79
FTL+P+ GE L T+E L +P S + EG KLW+
Sbjct: 209 FTLDPL-YGEFVL------TQENLQIPKSGKIYSFNEGNYKLWD 245
>pdb|1DBZ|A Chain A, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
pdb|1DBZ|B Chain B, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
pdb|1DBZ|C Chain C, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
pdb|1DBZ|D Chain D, C153s Mutant Of Pea Fructose-1,6-Bisphosphatase
Length = 357
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 36 FTLEPVNLGELTLLKGRVSTKEVLGLPNSDLVPGVYEGGLKLWE 79
FTL+P+ GE L T+E L +P S + EG KLW+
Sbjct: 209 FTLDPL-YGEFVL------TQENLQIPKSGKIYSFNEGNYKLWD 245
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 100 SGKRVLELGCGHGLPGI 116
SG RVL++GCG G P +
Sbjct: 61 SGDRVLDVGCGIGKPAV 77
>pdb|1Q9J|A Chain A, Structure Of Polyketide Synthase Associated Protein 5 From
Mycobacterium Tuberculosis
pdb|1Q9J|B Chain B, Structure Of Polyketide Synthase Associated Protein 5 From
Mycobacterium Tuberculosis
Length = 422
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 16/88 (18%)
Query: 40 PVNLGELTLLKGRVSTKEVLGLPNSDLVPGVYEGGLKLWEGSIDLVKALRLDVQNGNISF 99
PV E T L G S +G PN+D+V + + D+V LR D+ NG I
Sbjct: 275 PVAPTEATNLLGAASYLAEIG-PNTDIV-----------DLASDIVATLRADLANGVIQQ 322
Query: 100 SGKR---VLELGCGHGLPGIFACLEGAA 124
SG E G GLP + C + +
Sbjct: 323 SGLHFGTAFE-GTPPGLPPLVFCTDATS 349
>pdb|2B5U|A Chain A, Crystal Structure Of Colicin E3 V206c Mutant In Complex
With Its Immunity Protein
pdb|2B5U|C Chain C, Crystal Structure Of Colicin E3 V206c Mutant In Complex
With Its Immunity Protein
Length = 551
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 114 PGIF-ACLEGAAVIHFQEFNAEVLRYLTIPNVIANVPKKLQPAATIETNCQSGAEVRFLL 172
PG+F A + GA V++ N+ P V N K ++PA + A +RF
Sbjct: 217 PGVFTASIPGAPVLNISVNNSTPAVQTLSPGVTNNTDKDVRPAGFTQGGNTRDAVIRFPK 276
Query: 173 VTGVRSI 179
+G ++
Sbjct: 277 DSGHNAV 283
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 99 FSGKRVLELGCGHGLPGIFACLEGAAVIH 127
F GK VL++G G G+ I++ GA ++
Sbjct: 62 FEGKTVLDVGTGSGILAIWSAQAGARKVY 90
>pdb|2WFP|A Chain A, Crystal Structure Of Mannose 6-Phosphate Isomerase (Apo
Form) From Salmonella Typhimurium
Length = 394
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 137 RYLTIPNVIANVPKKLQPAATIETN-CQSGAEVRF 170
+Y+ IP ++ANV + +PA + T +SGAE+ F
Sbjct: 283 KYIDIPELVANVKFEPKPAGELLTAPVKSGAELDF 317
>pdb|3H1M|A Chain A, Crystal Structure Of Mannose 6-Phosphate Isomerase (Holo;
Zinc Bound)
pdb|3H1W|A Chain A, Crystal Structure Of Mannose 6-Phosphate Isomerase Bound
With Zinc And Yttrium
pdb|3H1Y|A Chain A, Crystal Structure Of Mannose 6-Phosphate Isomerase From
Salmonella Typhimurium Bound To Substrate (F6p)and Metal
Atom (Zn)
Length = 393
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 137 RYLTIPNVIANVPKKLQPAATIETN-CQSGAEVRF 170
+Y+ IP ++ANV + +PA + T +SGAE+ F
Sbjct: 282 KYIDIPELVANVKFEPKPAGELLTAPVKSGAELDF 316
>pdb|2ZUL|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533) In Complex With
Cofactor S-Adenosyl-L-Methionine
pdb|2ZWV|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533)
Length = 375
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 67 VPGVYEGGLKLWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVI 126
+PGV+ G K+ S+ L++AL+ + G G++VL+LG G+G + GA V+
Sbjct: 203 LPGVFSAG-KVDPASLLLLEALQERL--GPEGVRGRQVLDLGAGYGALTLPLARMGAEVV 259
Query: 127 HFQEFNAEVL 136
++ A VL
Sbjct: 260 GVEDDLASVL 269
>pdb|3DMF|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet
pdb|3DMG|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adohcy
pdb|3DMH|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet And Guanosine
Length = 381
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 67 VPGVYEGGLKLWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVI 126
+PGV+ G K+ S+ L++AL+ + G G++VL+LG G+G + GA V+
Sbjct: 203 LPGVFSAG-KVDPASLLLLEALQERL--GPEGVRGRQVLDLGAGYGALTLPLARMGAEVV 259
Query: 127 HFQEFNAEVL 136
++ A VL
Sbjct: 260 GVEDDLASVL 269
>pdb|3DLJ|A Chain A, Crystal Structure Of Human Carnosine Dipeptidase 1
pdb|3DLJ|B Chain B, Crystal Structure Of Human Carnosine Dipeptidase 1
Length = 485
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 66 LVPGVYEGGLKLWEGSIDLVKALRLDVQ 93
LVPG+Y+ + L E I+ KA+ LD++
Sbjct: 269 LVPGIYDEVVPLTEEEINTYKAIHLDLE 296
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.140 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,877,625
Number of Sequences: 62578
Number of extensions: 189807
Number of successful extensions: 418
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 403
Number of HSP's gapped (non-prelim): 26
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)