Query 030031
Match_columns 184
No_of_seqs 217 out of 1485
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 07:27:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030031.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030031hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2920 Predicted methyltransf 99.9 2.6E-23 5.6E-28 178.1 4.1 147 3-152 17-168 (282)
2 PF10294 Methyltransf_16: Puta 99.5 1.7E-14 3.8E-19 115.7 7.0 75 73-149 16-93 (173)
3 PF06325 PrmA: Ribosomal prote 99.2 1.2E-10 2.7E-15 101.2 8.7 70 76-152 143-212 (295)
4 COG2264 PrmA Ribosomal protein 99.1 3.7E-10 8E-15 98.4 8.4 68 77-151 145-212 (300)
5 COG3897 Predicted methyltransf 99.1 9.3E-11 2E-15 96.6 3.3 77 68-151 53-129 (218)
6 COG2263 Predicted RNA methylas 99.0 1.5E-09 3.3E-14 88.9 8.4 66 83-150 29-94 (198)
7 PF12847 Methyltransf_18: Meth 98.9 8.2E-09 1.8E-13 75.1 7.5 45 100-145 1-46 (112)
8 PF05175 MTS: Methyltransferas 98.8 1.8E-08 4E-13 80.2 9.2 62 80-150 19-81 (170)
9 KOG1499 Protein arginine N-met 98.8 1.6E-08 3.5E-13 89.3 7.2 59 91-151 51-109 (346)
10 PRK00517 prmA ribosomal protei 98.8 2.7E-08 5.8E-13 83.9 8.0 65 78-149 103-167 (250)
11 TIGR00406 prmA ribosomal prote 98.7 4E-08 8.7E-13 84.6 8.8 51 99-150 158-208 (288)
12 KOG3420 Predicted RNA methylas 98.6 3.8E-08 8.2E-13 78.2 5.1 68 77-145 25-92 (185)
13 TIGR00095 RNA methyltransferas 98.6 8.1E-08 1.7E-12 78.3 7.1 51 99-150 48-98 (189)
14 TIGR00478 tly hemolysin TlyA f 98.6 1.4E-07 3.1E-12 79.3 8.8 58 77-138 56-113 (228)
15 TIGR00537 hemK_rel_arch HemK-r 98.6 2.3E-07 4.9E-12 74.0 8.3 49 99-149 18-66 (179)
16 PRK00107 gidB 16S rRNA methylt 98.5 3.3E-07 7.1E-12 74.8 8.1 49 100-149 45-94 (187)
17 PRK14967 putative methyltransf 98.5 3.7E-07 7.9E-12 75.5 8.4 64 80-149 21-84 (223)
18 TIGR00138 gidB 16S rRNA methyl 98.5 2E-07 4.3E-12 75.4 6.6 50 99-149 41-91 (181)
19 TIGR00477 tehB tellurite resis 98.5 3.1E-07 6.6E-12 74.7 7.4 47 99-147 29-75 (195)
20 KOG1270 Methyltransferases [Co 98.5 9.5E-08 2.1E-12 81.9 4.5 41 99-140 88-128 (282)
21 PF13847 Methyltransf_31: Meth 98.5 3.9E-07 8.5E-12 70.6 7.4 50 100-150 3-54 (152)
22 PRK14968 putative methyltransf 98.5 6.6E-07 1.4E-11 70.6 8.4 65 76-150 7-71 (188)
23 PRK11207 tellurite resistance 98.5 4.4E-07 9.6E-12 73.9 7.5 48 99-148 29-76 (197)
24 COG2227 UbiG 2-polyprenyl-3-me 98.5 2.2E-07 4.7E-12 78.7 5.6 44 98-142 57-100 (243)
25 COG4123 Predicted O-methyltran 98.5 3.8E-07 8.3E-12 77.7 6.7 70 74-152 26-96 (248)
26 TIGR02469 CbiT precorrin-6Y C5 98.5 1E-06 2.2E-11 64.6 8.2 49 99-148 18-67 (124)
27 COG2890 HemK Methylase of poly 98.4 6.6E-07 1.4E-11 77.2 7.9 46 103-149 113-159 (280)
28 PRK10909 rsmD 16S rRNA m(2)G96 98.4 5.2E-07 1.1E-11 74.4 6.7 50 99-149 52-101 (199)
29 PRK08287 cobalt-precorrin-6Y C 98.4 1.3E-06 2.8E-11 70.1 8.5 50 99-149 30-80 (187)
30 PLN02585 magnesium protoporphy 98.4 1.3E-06 2.8E-11 76.7 9.1 46 99-146 143-188 (315)
31 COG2813 RsmC 16S RNA G1207 met 98.4 9.6E-07 2.1E-11 77.0 7.9 51 101-152 159-210 (300)
32 PRK03522 rumB 23S rRNA methylu 98.4 8.4E-07 1.8E-11 77.3 7.6 49 99-149 172-220 (315)
33 TIGR00452 methyltransferase, p 98.4 9.9E-07 2.1E-11 77.4 7.8 58 77-139 103-160 (314)
34 PRK12335 tellurite resistance 98.4 6.8E-07 1.5E-11 76.7 6.6 49 99-149 119-167 (287)
35 TIGR02021 BchM-ChlM magnesium 98.4 1.7E-06 3.7E-11 70.9 8.7 49 98-148 53-101 (219)
36 PRK10258 biotin biosynthesis p 98.4 1.1E-06 2.4E-11 73.4 7.6 40 100-140 42-81 (251)
37 PRK15001 SAM-dependent 23S rib 98.4 6.6E-07 1.4E-11 80.4 6.5 48 101-149 229-277 (378)
38 PRK13168 rumA 23S rRNA m(5)U19 98.4 1.5E-06 3.3E-11 79.0 8.4 50 99-150 296-345 (443)
39 PF13659 Methyltransf_26: Meth 98.4 1.1E-06 2.3E-11 64.5 6.1 48 101-149 1-48 (117)
40 PRK11727 23S rRNA mA1618 methy 98.3 2.4E-06 5.2E-11 75.3 9.1 68 79-147 89-161 (321)
41 PRK15068 tRNA mo(5)U34 methylt 98.3 1.7E-06 3.6E-11 76.0 7.9 42 98-139 120-161 (322)
42 PLN02396 hexaprenyldihydroxybe 98.3 1.2E-06 2.6E-11 77.1 6.7 47 98-146 129-175 (322)
43 PRK07402 precorrin-6B methylas 98.3 3E-06 6.5E-11 68.5 8.5 50 99-149 39-89 (196)
44 PRK11783 rlmL 23S rRNA m(2)G24 98.3 1.1E-06 2.4E-11 84.4 6.9 51 99-150 537-587 (702)
45 PRK15128 23S rRNA m(5)C1962 me 98.3 1.2E-06 2.6E-11 79.1 6.7 51 99-150 219-269 (396)
46 PF03848 TehB: Tellurite resis 98.3 2E-06 4.4E-11 70.7 6.9 42 98-140 28-69 (192)
47 PRK11036 putative S-adenosyl-L 98.3 2E-06 4.4E-11 72.3 6.9 47 99-147 43-89 (255)
48 PRK00377 cbiT cobalt-precorrin 98.3 3.4E-06 7.5E-11 68.5 7.9 50 98-148 38-89 (198)
49 PF03602 Cons_hypoth95: Conser 98.3 1.5E-06 3.3E-11 70.7 5.5 49 99-148 41-89 (183)
50 TIGR03840 TMPT_Se_Te thiopurin 98.3 3.3E-06 7.2E-11 70.1 7.4 64 71-140 7-73 (213)
51 PRK14103 trans-aconitate 2-met 98.2 1.8E-06 4E-11 72.5 5.9 45 99-143 28-73 (255)
52 PRK13944 protein-L-isoaspartat 98.2 3.4E-06 7.4E-11 69.1 7.2 50 99-149 71-122 (205)
53 TIGR03587 Pse_Me-ase pseudamin 98.2 4.2E-06 9.1E-11 68.9 7.4 42 99-140 42-84 (204)
54 PRK15451 tRNA cmo(5)U34 methyl 98.2 3.8E-06 8.3E-11 70.6 7.2 48 99-147 55-105 (247)
55 TIGR00080 pimt protein-L-isoas 98.2 6.2E-06 1.3E-10 67.8 8.0 51 98-149 75-127 (215)
56 TIGR02085 meth_trns_rumB 23S r 98.2 3.5E-06 7.6E-11 75.3 7.0 49 99-149 232-280 (374)
57 PF13489 Methyltransf_23: Meth 98.2 7E-06 1.5E-10 62.7 7.8 40 98-138 20-59 (161)
58 PRK04148 hypothetical protein; 98.2 5.8E-06 1.2E-10 64.5 7.3 53 83-140 3-56 (134)
59 KOG1500 Protein arginine N-met 98.2 4.6E-06 1E-10 74.3 7.3 59 92-152 169-227 (517)
60 smart00650 rADc Ribosomal RNA 98.2 4.2E-06 9.1E-11 66.3 6.4 45 99-145 12-56 (169)
61 PRK00121 trmB tRNA (guanine-N( 98.2 3.5E-06 7.5E-11 69.0 6.1 48 100-148 40-88 (202)
62 PRK00274 ksgA 16S ribosomal RN 98.2 4.4E-06 9.6E-11 71.4 7.0 44 99-144 41-84 (272)
63 PRK07580 Mg-protoporphyrin IX 98.2 4.8E-06 1E-10 68.0 6.8 46 99-146 62-107 (230)
64 TIGR02752 MenG_heptapren 2-hep 98.2 9.3E-06 2E-10 66.7 8.4 48 99-147 44-93 (231)
65 PRK01683 trans-aconitate 2-met 98.2 7.3E-06 1.6E-10 68.6 7.7 42 99-140 30-72 (258)
66 PRK05785 hypothetical protein; 98.2 3.5E-06 7.5E-11 70.3 5.6 41 100-140 51-91 (226)
67 TIGR03533 L3_gln_methyl protei 98.2 5.2E-06 1.1E-10 71.6 6.9 49 100-149 121-170 (284)
68 TIGR00479 rumA 23S rRNA (uraci 98.2 8E-06 1.7E-10 73.8 8.3 50 99-150 291-340 (431)
69 PRK04266 fibrillarin; Provisio 98.1 7.7E-06 1.7E-10 68.6 7.6 70 74-145 46-117 (226)
70 TIGR01983 UbiG ubiquinone bios 98.1 1.1E-05 2.5E-10 65.7 8.4 69 78-148 23-91 (224)
71 PF08241 Methyltransf_11: Meth 98.1 5.5E-06 1.2E-10 57.5 5.6 37 105-141 1-37 (95)
72 TIGR03704 PrmC_rel_meth putati 98.1 4.9E-06 1.1E-10 70.5 6.3 47 101-148 87-134 (251)
73 PRK14966 unknown domain/N5-glu 98.1 7.6E-06 1.7E-10 74.5 7.8 48 100-148 251-299 (423)
74 PRK13255 thiopurine S-methyltr 98.1 8.2E-06 1.8E-10 68.0 7.3 40 100-140 37-76 (218)
75 PRK09489 rsmC 16S ribosomal RN 98.1 5.4E-06 1.2E-10 73.5 6.4 49 101-150 197-246 (342)
76 TIGR00536 hemK_fam HemK family 98.1 6.7E-06 1.4E-10 70.6 6.5 48 102-150 116-164 (284)
77 PLN02244 tocopherol O-methyltr 98.1 8.4E-06 1.8E-10 71.8 7.1 47 99-147 117-164 (340)
78 PRK13942 protein-L-isoaspartat 98.1 1.5E-05 3.2E-10 65.8 7.9 50 98-148 74-125 (212)
79 PLN02672 methionine S-methyltr 98.1 5.2E-06 1.1E-10 83.0 6.0 68 79-150 100-168 (1082)
80 PRK00312 pcm protein-L-isoaspa 98.1 2.6E-05 5.7E-10 63.7 9.2 47 99-147 77-123 (212)
81 PLN02233 ubiquinone biosynthes 98.1 9.7E-06 2.1E-10 68.9 6.7 42 99-140 72-115 (261)
82 PRK05134 bifunctional 3-demeth 98.1 1.4E-05 2.9E-10 65.9 7.4 48 98-147 46-93 (233)
83 PRK01544 bifunctional N5-gluta 98.1 1.9E-05 4.1E-10 73.4 8.9 49 100-149 138-187 (506)
84 PF08003 Methyltransf_9: Prote 98.0 1.8E-05 3.9E-10 69.4 7.9 59 77-140 97-155 (315)
85 TIGR02143 trmA_only tRNA (urac 98.0 1.8E-05 3.9E-10 70.3 8.1 48 101-150 198-245 (353)
86 TIGR00740 methyltransferase, p 98.0 1.1E-05 2.5E-10 67.0 6.5 47 99-146 52-101 (239)
87 TIGR03534 RF_mod_PrmC protein- 98.0 2.4E-05 5.2E-10 64.6 8.4 66 78-149 70-136 (251)
88 COG2226 UbiE Methylase involve 98.0 1.4E-05 2.9E-10 67.9 6.9 48 100-147 51-99 (238)
89 COG2230 Cfa Cyclopropane fatty 98.0 1.2E-05 2.5E-10 69.9 6.5 47 95-141 67-113 (283)
90 PRK14896 ksgA 16S ribosomal RN 98.0 1.2E-05 2.6E-10 68.1 6.5 46 98-145 27-72 (258)
91 PRK11805 N5-glutamine S-adenos 98.0 1.2E-05 2.6E-10 70.1 6.6 47 102-149 135-182 (307)
92 PF13649 Methyltransf_25: Meth 98.0 1.1E-05 2.4E-10 58.2 5.2 41 104-145 1-45 (101)
93 COG4976 Predicted methyltransf 98.0 2E-06 4.4E-11 73.0 1.1 42 101-143 126-167 (287)
94 PRK05031 tRNA (uracil-5-)-meth 98.0 3.2E-05 6.9E-10 68.9 8.8 48 101-150 207-254 (362)
95 PRK09328 N5-glutamine S-adenos 98.0 2.5E-05 5.4E-10 65.7 7.6 46 99-145 107-153 (275)
96 PRK11873 arsM arsenite S-adeno 98.0 1.9E-05 4.2E-10 66.7 6.9 49 99-148 76-126 (272)
97 PRK06202 hypothetical protein; 98.0 6.7E-06 1.5E-10 68.1 4.0 42 99-140 59-105 (232)
98 PRK11705 cyclopropane fatty ac 98.0 2.7E-05 5.9E-10 69.9 8.0 45 98-144 165-210 (383)
99 COG0742 N6-adenine-specific me 98.0 2.1E-05 4.6E-10 64.5 6.5 48 98-146 41-88 (187)
100 PF01209 Ubie_methyltran: ubiE 98.0 1.8E-05 3.8E-10 66.7 6.1 44 99-142 46-91 (233)
101 KOG2793 Putative N2,N2-dimethy 97.9 1.3E-05 2.7E-10 68.5 5.2 75 74-150 53-134 (248)
102 TIGR01177 conserved hypothetic 97.9 3.4E-05 7.4E-10 67.5 8.0 62 83-150 169-230 (329)
103 KOG2904 Predicted methyltransf 97.9 4.4E-05 9.6E-10 66.3 8.1 73 77-152 127-200 (328)
104 TIGR02081 metW methionine bios 97.9 1.5E-05 3.2E-10 64.3 4.8 43 100-142 13-55 (194)
105 TIGR03438 probable methyltrans 97.9 2.3E-05 4.9E-10 68.0 5.9 46 100-146 63-110 (301)
106 PTZ00338 dimethyladenosine tra 97.9 3.6E-05 7.8E-10 67.0 7.1 48 98-147 34-81 (294)
107 TIGR02072 BioC biotin biosynth 97.9 3.7E-05 8E-10 62.4 6.8 42 99-140 33-75 (240)
108 TIGR00091 tRNA (guanine-N(7)-) 97.9 3.3E-05 7.2E-10 62.6 6.4 47 100-147 16-63 (194)
109 TIGR01444 fkbM_fam methyltrans 97.9 5.7E-05 1.2E-09 57.3 7.3 47 103-150 1-48 (143)
110 COG2242 CobL Precorrin-6B meth 97.9 6.1E-05 1.3E-09 61.8 7.9 76 96-174 30-111 (187)
111 TIGR00755 ksgA dimethyladenosi 97.9 4.9E-05 1.1E-09 64.1 7.3 44 99-144 28-71 (253)
112 PRK13943 protein-L-isoaspartat 97.9 5.6E-05 1.2E-09 66.6 7.9 50 99-149 79-130 (322)
113 PF02353 CMAS: Mycolic acid cy 97.8 5.9E-05 1.3E-09 65.0 7.6 46 94-140 56-102 (273)
114 PTZ00098 phosphoethanolamine N 97.8 4.6E-05 1E-09 64.8 6.8 42 99-140 51-92 (263)
115 KOG1271 Methyltransferases [Ge 97.8 4.4E-05 9.6E-10 62.9 6.2 63 81-145 48-111 (227)
116 PRK00216 ubiE ubiquinone/menaq 97.8 4.4E-05 9.5E-10 62.2 6.3 46 100-146 51-98 (239)
117 smart00828 PKS_MT Methyltransf 97.8 5.3E-05 1.2E-09 61.9 6.8 44 102-146 1-45 (224)
118 KOG1541 Predicted protein carb 97.8 4.5E-05 9.8E-10 64.5 6.3 45 100-145 50-94 (270)
119 PLN02781 Probable caffeoyl-CoA 97.8 5.4E-05 1.2E-09 63.6 6.8 51 99-150 67-119 (234)
120 PHA03411 putative methyltransf 97.8 4E-05 8.7E-10 66.4 5.8 40 101-140 65-105 (279)
121 PRK04338 N(2),N(2)-dimethylgua 97.8 5.7E-05 1.2E-09 68.0 6.8 49 101-150 58-107 (382)
122 PRK10901 16S rRNA methyltransf 97.8 9.3E-05 2E-09 67.1 8.1 50 99-149 243-293 (427)
123 PLN02336 phosphoethanolamine N 97.8 5E-05 1.1E-09 69.3 6.2 45 99-144 265-309 (475)
124 COG1092 Predicted SAM-dependen 97.8 9.4E-05 2E-09 66.9 7.8 56 99-155 216-271 (393)
125 PRK08317 hypothetical protein; 97.8 0.00014 3E-09 58.8 8.1 43 98-140 17-61 (241)
126 PHA03412 putative methyltransf 97.7 3.8E-05 8.3E-10 65.2 4.6 44 100-144 49-96 (241)
127 PTZ00146 fibrillarin; Provisio 97.7 0.00018 3.8E-09 62.9 8.7 65 75-140 107-174 (293)
128 PLN02336 phosphoethanolamine N 97.7 6.9E-05 1.5E-09 68.3 6.4 40 99-139 36-75 (475)
129 PF02475 Met_10: Met-10+ like- 97.7 7.8E-05 1.7E-09 61.6 6.0 53 98-151 99-152 (200)
130 PLN02490 MPBQ/MSBQ methyltrans 97.7 0.00018 4E-09 63.9 8.7 41 100-140 113-154 (340)
131 PF05958 tRNA_U5-meth_tr: tRNA 97.7 0.0001 2.2E-09 65.5 6.9 49 102-152 198-246 (352)
132 KOG3191 Predicted N6-DNA-methy 97.7 0.00016 3.4E-09 59.5 7.3 73 77-151 21-95 (209)
133 PRK11088 rrmA 23S rRNA methylt 97.7 0.00014 3.1E-09 61.8 7.5 41 100-140 85-129 (272)
134 COG2265 TrmA SAM-dependent met 97.6 0.00012 2.7E-09 66.9 6.9 53 98-152 291-343 (432)
135 TIGR00438 rrmJ cell division p 97.6 0.0001 2.2E-09 59.2 5.6 39 97-135 29-69 (188)
136 PF08242 Methyltransf_12: Meth 97.6 5.8E-06 1.2E-10 59.2 -1.5 36 105-140 1-37 (99)
137 PF10672 Methyltrans_SAM: S-ad 97.6 0.00013 2.9E-09 63.4 6.6 53 99-152 122-174 (286)
138 TIGR00308 TRM1 tRNA(guanine-26 97.6 0.00016 3.5E-09 65.0 7.4 49 101-150 45-95 (374)
139 PRK14904 16S rRNA methyltransf 97.6 0.00018 3.9E-09 65.6 7.8 50 99-149 249-300 (445)
140 TIGR00446 nop2p NOL1/NOP2/sun 97.6 0.00025 5.5E-09 60.4 8.0 51 99-150 70-122 (264)
141 smart00138 MeTrc Methyltransfe 97.6 0.00016 3.4E-09 61.8 6.7 41 100-140 99-149 (264)
142 PHA01634 hypothetical protein 97.6 0.00014 3E-09 56.9 5.4 54 95-149 23-76 (156)
143 PRK14902 16S rRNA methyltransf 97.6 0.0002 4.3E-09 65.2 7.4 51 99-150 249-301 (444)
144 PRK06922 hypothetical protein; 97.6 0.00017 3.7E-09 69.0 7.0 46 99-145 417-463 (677)
145 TIGR01934 MenG_MenH_UbiE ubiqu 97.6 0.00019 4.2E-09 57.7 6.1 44 100-144 39-84 (223)
146 KOG3201 Uncharacterized conser 97.5 4.5E-05 9.7E-10 61.8 2.0 71 72-147 5-77 (201)
147 cd02440 AdoMet_MTases S-adenos 97.5 0.00021 4.5E-09 48.7 5.0 38 103-140 1-38 (107)
148 PF05185 PRMT5: PRMT5 arginine 97.5 0.00043 9.3E-09 63.6 8.1 63 86-149 172-239 (448)
149 PRK00811 spermidine synthase; 97.5 0.00021 4.5E-09 61.6 5.7 45 100-145 76-121 (283)
150 PRK11188 rrmJ 23S rRNA methylt 97.4 0.00024 5.2E-09 58.6 5.3 36 98-133 49-86 (209)
151 COG2520 Predicted methyltransf 97.4 0.00028 6.1E-09 62.8 5.9 54 98-152 186-239 (341)
152 PF13679 Methyltransf_32: Meth 97.4 0.00086 1.9E-08 51.8 8.0 60 84-143 9-73 (141)
153 TIGR00563 rsmB ribosomal RNA s 97.4 0.00052 1.1E-08 62.2 7.7 50 99-149 237-287 (426)
154 TIGR02716 C20_methyl_CrtF C-20 97.4 0.00053 1.2E-08 59.1 7.4 49 99-149 148-197 (306)
155 PRK13256 thiopurine S-methyltr 97.4 0.00028 6.2E-09 59.4 5.5 41 100-141 43-83 (226)
156 PRK14121 tRNA (guanine-N(7)-)- 97.4 0.00038 8.3E-09 63.0 6.7 50 99-149 121-171 (390)
157 PF01135 PCMT: Protein-L-isoas 97.4 0.00045 9.9E-09 57.4 6.6 52 98-150 70-123 (209)
158 PRK14901 16S rRNA methyltransf 97.3 0.00076 1.7E-08 61.3 8.0 51 99-150 251-303 (434)
159 COG2518 Pcm Protein-L-isoaspar 97.3 0.00086 1.9E-08 56.0 7.1 50 98-149 70-119 (209)
160 COG4106 Tam Trans-aconitate me 97.3 0.00033 7.1E-09 59.2 4.4 41 100-140 30-71 (257)
161 PRK04457 spermidine synthase; 97.3 0.00052 1.1E-08 58.6 5.7 45 100-145 66-111 (262)
162 PRK14903 16S rRNA methyltransf 97.3 0.0012 2.6E-08 60.2 8.2 50 99-149 236-287 (431)
163 KOG2187 tRNA uracil-5-methyltr 97.3 0.0003 6.4E-09 65.4 4.2 66 85-152 368-433 (534)
164 KOG2899 Predicted methyltransf 97.2 0.00043 9.2E-09 59.3 4.7 48 97-145 55-103 (288)
165 PF07021 MetW: Methionine bios 97.2 0.00066 1.4E-08 56.0 5.4 42 99-140 12-53 (193)
166 PF05724 TPMT: Thiopurine S-me 97.1 0.00067 1.4E-08 56.6 4.9 61 74-140 13-76 (218)
167 COG0030 KsgA Dimethyladenosine 97.1 0.0016 3.5E-08 56.0 6.9 42 98-140 28-69 (259)
168 TIGR00417 speE spermidine synt 97.1 0.0011 2.4E-08 56.5 5.6 44 100-144 72-116 (270)
169 PLN02476 O-methyltransferase 97.0 0.0022 4.9E-08 55.6 7.2 51 99-150 117-169 (278)
170 PRK03612 spermidine synthase; 97.0 0.0012 2.6E-08 61.6 5.9 41 100-140 297-338 (521)
171 COG1189 Predicted rRNA methyla 97.0 0.0026 5.7E-08 54.1 7.3 55 79-137 62-116 (245)
172 PF05971 Methyltransf_10: Prot 97.0 0.0031 6.8E-08 55.3 7.9 66 80-147 81-149 (299)
173 PLN03075 nicotianamine synthas 96.9 0.0037 8.1E-08 54.7 8.0 45 100-145 123-170 (296)
174 KOG1540 Ubiquinone biosynthesi 96.9 0.002 4.3E-08 55.6 6.1 51 96-146 96-153 (296)
175 PF05401 NodS: Nodulation prot 96.9 0.0012 2.7E-08 54.7 4.6 38 102-140 45-82 (201)
176 PF01596 Methyltransf_3: O-met 96.9 0.0025 5.5E-08 52.7 6.5 51 99-150 44-96 (205)
177 KOG3010 Methyltransferase [Gen 96.9 0.00081 1.8E-08 57.4 3.2 37 103-140 36-72 (261)
178 PF09445 Methyltransf_15: RNA 96.9 0.0023 4.9E-08 51.5 5.6 45 102-148 1-45 (163)
179 PRK01581 speE spermidine synth 96.8 0.0021 4.6E-08 57.9 5.2 42 99-140 149-191 (374)
180 COG4076 Predicted RNA methylas 96.8 0.0013 2.8E-08 54.7 3.4 49 101-151 33-81 (252)
181 PLN02366 spermidine synthase 96.6 0.0046 1E-07 54.2 6.0 41 100-140 91-132 (308)
182 PF00398 RrnaAD: Ribosomal RNA 96.6 0.0036 7.9E-08 53.1 5.2 54 82-140 16-69 (262)
183 PF03291 Pox_MCEL: mRNA cappin 96.5 0.0043 9.2E-08 55.0 5.2 42 100-141 62-103 (331)
184 KOG0820 Ribosomal RNA adenine 96.5 0.0088 1.9E-07 52.1 6.7 44 96-140 54-97 (315)
185 PF09243 Rsm22: Mitochondrial 96.4 0.0098 2.1E-07 51.1 6.7 63 78-140 11-75 (274)
186 PF02527 GidB: rRNA small subu 96.3 0.027 5.8E-07 46.0 8.4 50 100-149 48-98 (184)
187 COG1041 Predicted DNA modifica 96.2 0.0079 1.7E-07 53.7 5.3 58 83-146 184-241 (347)
188 COG4122 Predicted O-methyltran 96.1 0.03 6.6E-07 47.0 8.0 52 99-151 58-111 (219)
189 COG2519 GCD14 tRNA(1-methylade 96.1 0.017 3.6E-07 49.6 6.3 49 97-146 91-141 (256)
190 PRK11760 putative 23S rRNA C24 96.1 0.0094 2E-07 53.4 4.8 36 97-133 208-243 (357)
191 PF04816 DUF633: Family of unk 96.0 0.02 4.3E-07 47.5 6.5 47 104-151 1-48 (205)
192 PRK00050 16S rRNA m(4)C1402 me 96.0 0.016 3.6E-07 50.6 6.2 42 99-140 18-61 (296)
193 PF05219 DREV: DREV methyltran 96.0 0.021 4.5E-07 49.3 6.7 45 99-144 93-137 (265)
194 PF08704 GCD14: tRNA methyltra 96.0 0.03 6.5E-07 47.8 7.5 53 97-150 37-91 (247)
195 KOG2361 Predicted methyltransf 95.9 0.009 2E-07 51.1 3.7 47 103-150 74-123 (264)
196 KOG4300 Predicted methyltransf 95.8 0.01 2.2E-07 50.0 3.9 44 103-147 79-122 (252)
197 COG0357 GidB Predicted S-adeno 95.8 0.033 7.1E-07 46.7 6.8 51 101-151 68-119 (215)
198 KOG1501 Arginine N-methyltrans 95.8 0.012 2.7E-07 54.3 4.5 45 103-148 69-113 (636)
199 PF01728 FtsJ: FtsJ-like methy 95.7 0.018 3.9E-07 45.6 4.8 35 100-134 23-59 (181)
200 KOG1227 Putative methyltransfe 95.6 0.01 2.3E-07 52.3 3.0 76 76-152 168-246 (351)
201 PF02390 Methyltransf_4: Putat 95.4 0.06 1.3E-06 44.0 6.9 43 103-146 20-63 (195)
202 PRK10742 putative methyltransf 95.3 0.048 1E-06 46.7 6.3 42 103-146 91-132 (250)
203 COG3963 Phospholipid N-methylt 95.3 0.084 1.8E-06 43.2 7.1 58 79-140 31-90 (194)
204 PLN02589 caffeoyl-CoA O-methyl 95.3 0.06 1.3E-06 45.9 6.6 50 99-149 78-129 (247)
205 PF00891 Methyltransf_2: O-met 95.2 0.098 2.1E-06 43.3 7.7 40 100-140 100-140 (241)
206 PF02384 N6_Mtase: N-6 DNA Met 95.2 0.077 1.7E-06 45.6 7.1 61 82-147 32-100 (311)
207 PLN02823 spermine synthase 95.1 0.047 1E-06 48.5 5.7 46 100-146 103-149 (336)
208 TIGR02987 met_A_Alw26 type II 95.1 0.046 9.9E-07 50.8 5.8 47 100-147 31-86 (524)
209 PF01170 UPF0020: Putative RNA 94.9 0.039 8.5E-07 44.4 4.3 61 83-148 15-85 (179)
210 PRK11783 rlmL 23S rRNA m(2)G24 94.5 0.14 3E-06 49.7 7.8 64 83-150 176-282 (702)
211 COG0500 SmtA SAM-dependent met 94.4 0.12 2.5E-06 35.8 5.2 35 104-139 52-88 (257)
212 COG2521 Predicted archaeal met 94.1 0.031 6.7E-07 48.0 2.1 42 99-140 133-174 (287)
213 KOG1661 Protein-L-isoaspartate 94.1 0.085 1.9E-06 44.5 4.5 50 98-148 80-132 (237)
214 KOG0024 Sorbitol dehydrogenase 94.0 0.092 2E-06 46.8 4.9 43 99-141 168-212 (354)
215 cd00315 Cyt_C5_DNA_methylase C 93.9 0.12 2.6E-06 44.3 5.4 38 103-140 2-39 (275)
216 PF08123 DOT1: Histone methyla 93.9 0.18 3.9E-06 41.8 6.2 41 99-139 41-82 (205)
217 PF07757 AdoMet_MTase: Predict 93.9 0.12 2.7E-06 39.0 4.7 49 83-132 41-89 (112)
218 PF01555 N6_N4_Mtase: DNA meth 93.2 0.44 9.4E-06 38.0 7.3 58 77-140 173-230 (231)
219 PF01739 CheR: CheR methyltran 92.9 0.35 7.6E-06 39.7 6.4 41 100-140 31-81 (196)
220 PF02005 TRM: N2,N2-dimethylgu 92.9 0.19 4.2E-06 45.3 5.2 50 101-151 50-101 (377)
221 KOG2497 Predicted methyltransf 92.7 0.13 2.7E-06 44.5 3.5 48 72-123 66-113 (262)
222 COG1867 TRM1 N2,N2-dimethylgua 92.6 0.21 4.6E-06 45.1 5.0 46 101-147 53-99 (380)
223 COG1352 CheR Methylase of chem 92.6 0.45 9.7E-06 41.2 6.8 41 100-140 96-146 (268)
224 KOG1975 mRNA cap methyltransfe 92.0 0.2 4.4E-06 44.8 4.0 42 99-140 116-157 (389)
225 KOG2078 tRNA modification enzy 91.4 0.15 3.3E-06 47.0 2.7 53 98-152 247-299 (495)
226 PF07942 N2227: N2227-like pro 91.0 1.1 2.3E-05 38.9 7.5 47 98-148 54-100 (270)
227 KOG2940 Predicted methyltransf 90.9 0.25 5.5E-06 42.5 3.4 40 101-140 73-112 (325)
228 TIGR03439 methyl_EasF probable 90.8 0.51 1.1E-05 41.7 5.4 46 99-145 75-125 (319)
229 PF00145 DNA_methylase: C-5 cy 90.7 0.49 1.1E-05 40.0 5.1 41 103-144 2-42 (335)
230 PF01234 NNMT_PNMT_TEMT: NNMT/ 90.5 0.18 4E-06 43.3 2.3 43 98-140 54-96 (256)
231 PF01564 Spermine_synth: Sperm 90.2 0.63 1.4E-05 39.4 5.3 41 100-140 76-117 (246)
232 COG0293 FtsJ 23S rRNA methylas 90.0 0.67 1.4E-05 38.7 5.2 38 96-133 41-80 (205)
233 PRK11933 yebU rRNA (cytosine-C 89.6 1 2.2E-05 41.9 6.5 50 99-149 112-163 (470)
234 COG2384 Predicted SAM-dependen 89.4 0.78 1.7E-05 38.8 5.1 52 100-152 16-68 (226)
235 PRK11524 putative methyltransf 89.3 1.8 3.9E-05 37.1 7.5 53 82-140 195-247 (284)
236 PRK10611 chemotaxis methyltran 88.9 0.81 1.8E-05 39.9 5.1 39 102-140 117-164 (287)
237 KOG3987 Uncharacterized conser 88.4 0.076 1.6E-06 45.0 -1.5 44 99-143 111-154 (288)
238 COG0220 Predicted S-adenosylme 88.1 1.3 2.8E-05 37.4 5.6 39 102-140 50-89 (227)
239 COG0116 Predicted N6-adenine-s 88.0 1.1 2.5E-05 40.6 5.5 51 99-150 190-280 (381)
240 PF06080 DUF938: Protein of un 87.9 2.3 5.1E-05 35.4 7.0 44 102-146 27-71 (204)
241 PRK13699 putative methylase; P 87.6 2.9 6.2E-05 35.0 7.5 53 82-140 150-202 (227)
242 PF01861 DUF43: Protein of unk 87.5 4 8.6E-05 35.0 8.2 66 69-140 18-84 (243)
243 PF05891 Methyltransf_PK: AdoM 87.3 0.94 2E-05 38.2 4.3 41 100-140 55-95 (218)
244 PF03141 Methyltransf_29: Puta 86.5 1.3 2.8E-05 41.6 5.1 77 39-124 61-141 (506)
245 PRK01544 bifunctional N5-gluta 86.5 1.7 3.7E-05 40.6 6.0 41 100-140 347-388 (506)
246 PF07091 FmrO: Ribosomal RNA m 86.5 0.93 2E-05 38.9 3.9 40 101-140 106-146 (251)
247 PF01189 Nol1_Nop2_Fmu: NOL1/N 86.0 5 0.00011 34.6 8.3 71 73-151 65-137 (283)
248 COG1063 Tdh Threonine dehydrog 85.9 1.5 3.3E-05 38.7 5.2 43 99-141 167-211 (350)
249 PF02636 Methyltransf_28: Puta 85.5 1.1 2.4E-05 37.6 4.0 54 84-137 2-64 (252)
250 KOG4058 Uncharacterized conser 85.5 0.99 2.1E-05 36.5 3.4 45 102-146 74-118 (199)
251 PF11599 AviRa: RRNA methyltra 85.3 2.5 5.5E-05 35.9 5.9 44 101-145 52-98 (246)
252 COG4262 Predicted spermidine s 85.1 2.4 5.1E-05 38.9 5.9 40 101-140 290-330 (508)
253 KOG2730 Methylase [General fun 85.1 0.68 1.5E-05 39.5 2.4 47 100-148 94-140 (263)
254 COG0421 SpeE Spermidine syntha 85.0 2.2 4.8E-05 37.1 5.6 39 102-140 78-117 (282)
255 TIGR00675 dcm DNA-methyltransf 84.1 2 4.3E-05 37.6 5.0 37 104-140 1-37 (315)
256 PF02086 MethyltransfD12: D12 83.9 1.5 3.3E-05 36.2 4.0 52 83-139 7-58 (260)
257 PRK00536 speE spermidine synth 81.9 3.5 7.5E-05 35.5 5.5 41 100-141 72-112 (262)
258 cd08283 FDH_like_1 Glutathione 81.4 3 6.5E-05 36.8 5.1 43 98-140 182-226 (386)
259 KOG1709 Guanidinoacetate methy 79.7 6.2 0.00013 33.8 6.1 42 99-140 100-141 (271)
260 COG0270 Dcm Site-specific DNA 79.3 4.5 9.8E-05 35.5 5.5 40 101-140 3-42 (328)
261 PF05206 TRM13: Methyltransfer 78.8 4.4 9.6E-05 34.8 5.1 38 96-133 14-57 (259)
262 COG3129 Predicted SAM-dependen 77.8 4.8 0.0001 34.8 5.0 70 81-152 57-130 (292)
263 PF12147 Methyltransf_20: Puta 77.5 14 0.0003 32.8 7.8 48 100-148 135-185 (311)
264 KOG1663 O-methyltransferase [S 76.9 9.2 0.0002 32.6 6.4 53 83-139 60-114 (237)
265 PF03686 UPF0146: Uncharacteri 76.1 9.4 0.0002 29.6 5.7 45 82-134 2-47 (127)
266 PF05050 Methyltransf_21: Meth 76.0 7.1 0.00015 29.3 5.2 43 106-149 1-50 (167)
267 KOG2671 Putative RNA methylase 75.8 1.3 2.9E-05 40.0 1.2 54 98-152 206-261 (421)
268 PF11899 DUF3419: Protein of u 75.0 9.1 0.0002 34.7 6.3 59 75-142 18-76 (380)
269 KOG4589 Cell division protein 73.9 5.7 0.00012 33.3 4.3 36 97-132 66-103 (232)
270 KOG1253 tRNA methyltransferase 73.6 1.3 2.9E-05 41.5 0.6 52 99-151 108-161 (525)
271 COG1889 NOP1 Fibrillarin-like 73.5 10 0.00022 32.0 5.8 69 71-140 46-117 (231)
272 PRK10458 DNA cytosine methylas 73.2 7 0.00015 36.4 5.2 40 101-140 88-127 (467)
273 PLN02668 indole-3-acetate carb 72.6 2.4 5.3E-05 38.5 2.0 39 101-139 64-118 (386)
274 TIGR00006 S-adenosyl-methyltra 72.1 14 0.00029 32.7 6.5 46 99-145 19-65 (305)
275 cd08237 ribitol-5-phosphate_DH 72.1 7.3 0.00016 33.7 4.9 42 99-140 162-206 (341)
276 PRK09880 L-idonate 5-dehydroge 71.9 8.2 0.00018 33.3 5.1 42 99-140 168-211 (343)
277 KOG1201 Hydroxysteroid 17-beta 70.4 16 0.00035 32.2 6.6 51 95-147 32-85 (300)
278 PF05148 Methyltransf_8: Hypot 70.1 7.9 0.00017 32.7 4.4 32 100-133 72-103 (219)
279 PRK09424 pntA NAD(P) transhydr 70.0 8.7 0.00019 36.2 5.1 41 99-140 163-205 (509)
280 COG1064 AdhP Zn-dependent alco 69.4 9.9 0.00021 34.1 5.1 42 98-140 164-207 (339)
281 KOG2651 rRNA adenine N-6-methy 68.4 14 0.0003 34.1 5.8 38 99-137 151-190 (476)
282 COG1062 AdhC Zn-dependent alco 68.3 12 0.00026 33.8 5.4 43 98-140 183-227 (366)
283 COG5459 Predicted rRNA methyla 67.8 11 0.00023 34.6 5.0 59 95-155 108-168 (484)
284 COG3392 Adenine-specific DNA m 67.7 6.6 0.00014 34.5 3.5 50 82-132 8-58 (330)
285 PF03721 UDPG_MGDP_dh_N: UDP-g 66.6 12 0.00025 30.3 4.6 30 110-140 7-40 (185)
286 COG0144 Sun tRNA and rRNA cyto 66.6 24 0.00052 31.5 7.1 53 98-151 154-209 (355)
287 KOG0022 Alcohol dehydrogenase, 65.8 12 0.00027 33.6 4.9 42 99-140 191-234 (375)
288 COG1565 Uncharacterized conser 64.6 28 0.00062 31.6 7.1 54 83-137 61-123 (370)
289 PF01269 Fibrillarin: Fibrilla 62.6 29 0.00062 29.5 6.4 66 74-140 47-115 (229)
290 TIGR01202 bchC 2-desacetyl-2-h 62.3 14 0.0003 31.5 4.6 42 99-140 143-186 (308)
291 KOG2915 tRNA(1-methyladenosine 62.1 20 0.00042 31.7 5.4 43 97-139 102-146 (314)
292 PRK08328 hypothetical protein; 61.8 8.8 0.00019 32.0 3.2 36 98-133 24-61 (231)
293 KOG1269 SAM-dependent methyltr 61.1 8.2 0.00018 34.8 3.0 53 99-151 109-161 (364)
294 PLN02740 Alcohol dehydrogenase 60.8 16 0.00034 32.2 4.8 41 98-140 196-240 (381)
295 TIGR01381 E1_like_apg7 E1-like 60.7 9.8 0.00021 37.0 3.6 36 98-133 335-372 (664)
296 KOG2352 Predicted spermine/spe 60.2 10 0.00022 35.6 3.5 43 102-144 50-92 (482)
297 cd01080 NAD_bind_m-THF_DH_Cycl 59.5 43 0.00094 26.7 6.7 38 97-135 40-80 (168)
298 TIGR03366 HpnZ_proposed putati 59.3 20 0.00044 29.9 5.0 42 99-140 119-162 (280)
299 TIGR02818 adh_III_F_hyde S-(hy 58.9 20 0.00042 31.4 5.0 43 98-140 183-227 (368)
300 PRK05690 molybdopterin biosynt 58.9 9.5 0.00021 32.1 2.9 35 98-132 29-65 (245)
301 COG1255 Uncharacterized protei 57.7 24 0.00052 27.3 4.6 43 84-134 4-47 (129)
302 cd01075 NAD_bind_Leu_Phe_Val_D 57.5 57 0.0012 26.4 7.2 42 96-140 23-68 (200)
303 KOG2798 Putative trehalase [Ca 57.4 18 0.00039 32.5 4.4 49 99-151 149-197 (369)
304 TIGR02356 adenyl_thiF thiazole 57.4 11 0.00023 30.7 2.9 35 98-132 18-54 (202)
305 PF11968 DUF3321: Putative met 57.1 11 0.00025 31.7 3.0 53 79-133 30-82 (219)
306 cd00401 AdoHcyase S-adenosyl-L 56.7 33 0.00072 31.5 6.2 44 96-140 197-242 (413)
307 PF13578 Methyltransf_24: Meth 56.6 5.1 0.00011 28.5 0.8 30 105-134 1-34 (106)
308 PRK08862 short chain dehydroge 56.0 31 0.00068 28.1 5.5 42 98-140 2-46 (227)
309 TIGR03451 mycoS_dep_FDH mycoth 55.9 24 0.00051 30.6 5.0 43 98-140 174-218 (358)
310 PF01488 Shikimate_DH: Shikima 55.7 36 0.00079 25.6 5.5 43 98-140 9-53 (135)
311 cd05188 MDR Medium chain reduc 55.2 26 0.00057 27.9 4.9 40 99-139 133-174 (271)
312 COG4017 Uncharacterized protei 55.0 24 0.00053 29.8 4.6 70 75-146 19-89 (254)
313 PF04989 CmcI: Cephalosporin h 54.6 30 0.00064 28.9 5.1 54 74-132 11-69 (206)
314 cd05191 NAD_bind_amino_acid_DH 54.5 57 0.0012 22.5 5.9 47 85-131 7-55 (86)
315 COG1004 Ugd Predicted UDP-gluc 54.2 19 0.00041 33.2 4.1 29 110-139 7-39 (414)
316 cd08281 liver_ADH_like1 Zinc-d 53.4 26 0.00056 30.6 4.9 43 98-140 189-233 (371)
317 PRK08223 hypothetical protein; 53.4 11 0.00024 32.9 2.5 36 98-133 24-61 (287)
318 COG5379 BtaA S-adenosylmethion 52.9 34 0.00074 30.7 5.4 54 76-138 47-100 (414)
319 TIGR02355 moeB molybdopterin s 52.2 13 0.00028 31.3 2.7 35 99-133 22-58 (240)
320 cd01483 E1_enzyme_family Super 51.7 16 0.00036 27.5 3.0 41 103-148 1-43 (143)
321 cd01065 NAD_bind_Shikimate_DH 51.3 73 0.0016 23.8 6.6 41 97-139 15-59 (155)
322 TIGR03201 dearomat_had 6-hydro 50.6 31 0.00068 29.7 4.9 42 98-140 164-207 (349)
323 cd00755 YgdL_like Family of ac 49.9 15 0.00032 31.0 2.6 35 99-133 9-45 (231)
324 COG1568 Predicted methyltransf 49.3 22 0.00047 31.6 3.6 66 69-140 126-192 (354)
325 PF03492 Methyltransf_7: SAM d 48.7 15 0.00032 32.5 2.6 40 100-139 16-72 (334)
326 PLN02827 Alcohol dehydrogenase 47.9 37 0.00079 29.9 5.0 40 98-139 191-234 (378)
327 PRK07411 hypothetical protein; 47.7 12 0.00026 33.8 1.9 45 99-148 36-82 (390)
328 PF04445 SAM_MT: Putative SAM- 47.0 30 0.00066 29.4 4.1 36 103-139 78-113 (234)
329 PRK05597 molybdopterin biosynt 46.4 15 0.00032 32.7 2.3 36 98-133 25-62 (355)
330 cd08300 alcohol_DH_class_III c 46.1 44 0.00096 29.0 5.2 39 99-139 185-227 (368)
331 PRK12548 shikimate 5-dehydroge 45.9 87 0.0019 26.8 6.9 35 98-133 123-160 (289)
332 cd08239 THR_DH_like L-threonin 45.6 45 0.00097 28.3 5.0 39 99-139 162-204 (339)
333 PF00899 ThiF: ThiF family; I 45.2 23 0.0005 26.5 2.8 43 101-148 2-46 (135)
334 PF00107 ADH_zinc_N: Zinc-bind 45.1 28 0.00061 25.1 3.3 30 110-140 1-31 (130)
335 TIGR02354 thiF_fam2 thiamine b 44.6 27 0.00059 28.5 3.4 35 98-132 18-54 (200)
336 PRK07878 molybdopterin biosynt 44.3 16 0.00034 33.0 2.1 46 99-149 40-87 (392)
337 COG0863 DNA modification methy 44.1 83 0.0018 26.2 6.4 43 97-140 219-261 (302)
338 PF03059 NAS: Nicotianamine sy 44.0 52 0.0011 28.6 5.2 40 101-140 121-163 (276)
339 PRK06153 hypothetical protein; 44.0 24 0.00052 32.3 3.2 34 99-132 174-209 (393)
340 PRK09242 tropinone reductase; 43.1 1E+02 0.0022 24.8 6.7 47 97-145 5-54 (257)
341 PLN02780 ketoreductase/ oxidor 42.5 1.6E+02 0.0035 25.4 8.1 44 100-145 52-98 (320)
342 cd08232 idonate-5-DH L-idonate 42.3 52 0.0011 27.8 5.0 40 100-139 165-206 (339)
343 PRK08339 short chain dehydroge 42.3 94 0.002 25.6 6.4 42 98-140 5-49 (263)
344 cd08254 hydroxyacyl_CoA_DH 6-h 42.1 52 0.0011 27.5 4.8 42 98-140 163-206 (338)
345 cd08301 alcohol_DH_plants Plan 42.0 53 0.0011 28.5 5.0 40 98-139 185-228 (369)
346 PRK07523 gluconate 5-dehydroge 41.2 1.1E+02 0.0024 24.6 6.6 40 98-139 7-50 (255)
347 TIGR03325 BphB_TodD cis-2,3-di 41.0 84 0.0018 25.6 5.8 40 99-139 3-45 (262)
348 cd05311 NAD_bind_2_malic_enz N 40.2 86 0.0019 26.0 5.8 51 81-132 6-60 (226)
349 PRK07688 thiamine/molybdopteri 40.0 30 0.00065 30.7 3.2 35 98-132 21-57 (339)
350 cd08277 liver_alcohol_DH_like 39.8 62 0.0013 28.1 5.1 40 98-139 182-225 (365)
351 PRK06949 short chain dehydroge 39.7 98 0.0021 24.8 6.0 41 97-139 5-49 (258)
352 KOG3115 Methyltransferase-like 39.6 37 0.0008 28.9 3.4 38 102-139 62-100 (249)
353 PRK09072 short chain dehydroge 39.6 95 0.0021 25.2 5.9 40 99-139 3-45 (263)
354 PRK15116 sulfur acceptor prote 39.5 39 0.00084 29.2 3.7 36 98-133 27-64 (268)
355 PRK14027 quinate/shikimate deh 39.0 1E+02 0.0022 26.5 6.3 42 98-139 124-167 (283)
356 PRK10309 galactitol-1-phosphat 38.9 64 0.0014 27.6 5.0 39 99-139 159-201 (347)
357 PRK05867 short chain dehydroge 38.8 89 0.0019 25.2 5.6 41 98-139 6-49 (253)
358 PRK12549 shikimate 5-dehydroge 38.6 1.1E+02 0.0024 26.2 6.4 43 98-140 124-168 (284)
359 PRK02318 mannitol-1-phosphate 38.4 55 0.0012 29.2 4.6 38 102-140 1-41 (381)
360 cd00757 ThiF_MoeB_HesA_family 38.4 40 0.00086 27.8 3.5 35 99-133 19-55 (228)
361 PRK03369 murD UDP-N-acetylmura 37.8 60 0.0013 30.0 4.9 39 99-138 10-50 (488)
362 KOG1098 Putative SAM-dependent 37.3 57 0.0012 32.0 4.7 37 97-133 41-79 (780)
363 cd08285 NADP_ADH NADP(H)-depen 37.2 75 0.0016 27.2 5.2 42 98-139 164-207 (351)
364 KOG1207 Diacetyl reductase/L-x 37.0 93 0.002 26.1 5.3 42 98-140 4-48 (245)
365 cd05213 NAD_bind_Glutamyl_tRNA 37.0 1.3E+02 0.0028 26.0 6.6 37 99-137 176-216 (311)
366 PF02254 TrkA_N: TrkA-N domain 36.7 73 0.0016 22.6 4.3 34 109-142 4-40 (116)
367 PRK00045 hemA glutamyl-tRNA re 36.0 86 0.0019 28.4 5.5 40 98-137 179-220 (423)
368 TIGR00561 pntA NAD(P) transhyd 35.7 73 0.0016 30.2 5.1 41 99-140 162-204 (511)
369 PRK07035 short chain dehydroge 35.5 1.5E+02 0.0032 23.8 6.4 41 98-139 5-48 (252)
370 PRK12475 thiamine/molybdopteri 35.0 47 0.001 29.4 3.6 36 98-133 21-58 (338)
371 COG3510 CmcI Cephalosporin hyd 34.8 1.1E+02 0.0023 26.0 5.3 57 73-134 47-108 (237)
372 PRK07533 enoyl-(acyl carrier p 34.6 1.4E+02 0.0029 24.5 6.1 39 96-135 5-48 (258)
373 cd08238 sorbose_phosphate_red 34.3 71 0.0015 28.4 4.7 42 99-140 174-220 (410)
374 PRK12749 quinate/shikimate deh 34.2 1.2E+02 0.0026 26.2 5.9 38 96-133 119-158 (288)
375 PRK08644 thiamine biosynthesis 34.2 52 0.0011 27.0 3.5 35 98-132 25-61 (212)
376 KOG2013 SMT3/SUMO-activating c 33.5 61 0.0013 30.9 4.1 35 99-133 10-46 (603)
377 cd01485 E1-1_like Ubiquitin ac 33.4 51 0.0011 26.7 3.3 35 99-133 17-53 (198)
378 PF04672 Methyltransf_19: S-ad 33.4 82 0.0018 27.4 4.7 36 102-137 70-109 (267)
379 PRK06057 short chain dehydroge 33.2 1.4E+02 0.0031 24.0 6.0 38 99-137 5-45 (255)
380 PRK05872 short chain dehydroge 33.1 1.4E+02 0.0031 25.0 6.2 41 98-139 6-49 (296)
381 PRK14851 hypothetical protein; 32.9 28 0.00061 34.0 1.9 36 98-133 40-77 (679)
382 PRK06035 3-hydroxyacyl-CoA deh 32.8 1.1E+02 0.0024 25.9 5.5 37 102-139 4-42 (291)
383 cd01487 E1_ThiF_like E1_ThiF_l 32.6 60 0.0013 25.7 3.5 31 103-133 1-33 (174)
384 KOG0725 Reductases with broad 32.5 1.7E+02 0.0036 24.9 6.5 43 97-140 4-49 (270)
385 PRK06124 gluconate 5-dehydroge 32.2 2.3E+02 0.005 22.7 7.1 42 97-139 7-51 (256)
386 cd01489 Uba2_SUMO Ubiquitin ac 32.2 33 0.00072 30.3 2.1 31 103-133 1-33 (312)
387 COG0677 WecC UDP-N-acetyl-D-ma 32.1 44 0.00096 30.9 3.0 37 102-139 10-48 (436)
388 PRK07097 gluconate 5-dehydroge 31.9 2E+02 0.0043 23.4 6.7 43 96-139 5-50 (265)
389 PRK08306 dipicolinate synthase 31.8 1.8E+02 0.0039 25.1 6.6 42 96-138 147-190 (296)
390 TIGR00936 ahcY adenosylhomocys 31.8 1.5E+02 0.0032 27.2 6.4 38 97-135 191-230 (406)
391 KOG2017 Molybdopterin synthase 31.8 56 0.0012 29.9 3.5 39 95-133 60-100 (427)
392 PRK08703 short chain dehydroge 31.8 1.6E+02 0.0036 23.3 6.1 41 98-139 3-46 (239)
393 PRK06398 aldose dehydrogenase; 31.6 88 0.0019 25.6 4.5 34 98-132 3-39 (258)
394 TIGR02822 adh_fam_2 zinc-bindi 31.6 96 0.0021 26.6 4.9 42 98-140 163-206 (329)
395 PRK12826 3-ketoacyl-(acyl-carr 31.2 2.1E+02 0.0046 22.6 6.6 37 99-137 4-44 (251)
396 PRK05476 S-adenosyl-L-homocyst 31.1 1.5E+02 0.0032 27.4 6.2 37 97-136 208-248 (425)
397 PRK00421 murC UDP-N-acetylmura 31.1 77 0.0017 28.8 4.4 35 98-133 4-41 (461)
398 PRK07063 short chain dehydroge 31.1 1.6E+02 0.0035 23.7 6.0 41 99-140 5-48 (260)
399 PRK07819 3-hydroxybutyryl-CoA 31.1 1.1E+02 0.0024 26.1 5.2 43 103-147 7-51 (286)
400 PRK10083 putative oxidoreducta 31.0 1E+02 0.0022 26.0 4.9 41 98-140 158-203 (339)
401 PRK05786 fabG 3-ketoacyl-(acyl 30.8 1.6E+02 0.0034 23.3 5.8 40 99-139 3-45 (238)
402 cd05278 FDH_like Formaldehyde 30.8 1.1E+02 0.0024 25.8 5.1 41 99-139 166-208 (347)
403 PRK08762 molybdopterin biosynt 30.7 55 0.0012 29.2 3.3 35 98-132 132-168 (376)
404 PF07101 DUF1363: Protein of u 30.3 19 0.00041 26.9 0.3 16 104-119 6-21 (124)
405 PRK07890 short chain dehydroge 30.2 1.8E+02 0.0038 23.3 6.0 40 99-139 3-45 (258)
406 PRK06720 hypothetical protein; 30.1 2E+02 0.0044 22.5 6.2 40 98-138 13-55 (169)
407 PLN03154 putative allyl alcoho 30.0 1.1E+02 0.0023 26.6 5.0 41 98-139 156-199 (348)
408 PRK06125 short chain dehydroge 29.9 1.8E+02 0.0038 23.5 6.1 41 98-139 4-47 (259)
409 cd08278 benzyl_alcohol_DH Benz 29.9 1.2E+02 0.0025 26.3 5.2 41 99-139 185-227 (365)
410 PRK12829 short chain dehydroge 29.9 1.7E+02 0.0037 23.4 5.9 41 98-139 8-51 (264)
411 PRK06113 7-alpha-hydroxysteroi 29.8 1.7E+02 0.0037 23.6 5.9 41 98-139 8-51 (255)
412 PRK08265 short chain dehydroge 29.7 1.8E+02 0.0038 23.7 6.0 39 99-138 4-45 (261)
413 KOG3178 Hydroxyindole-O-methyl 29.7 1.2E+02 0.0026 27.3 5.3 44 99-144 175-219 (342)
414 PRK06200 2,3-dihydroxy-2,3-dih 29.7 1.6E+02 0.0035 23.9 5.8 40 99-139 4-46 (263)
415 PF02737 3HCDH_N: 3-hydroxyacy 29.6 1.2E+02 0.0025 24.1 4.8 39 104-146 2-44 (180)
416 PRK14852 hypothetical protein; 29.6 35 0.00076 34.9 2.0 36 98-133 329-366 (989)
417 TIGR02819 fdhA_non_GSH formald 29.4 1.1E+02 0.0024 27.2 5.1 42 99-140 184-227 (393)
418 PRK06172 short chain dehydroge 29.1 2.3E+02 0.0051 22.6 6.6 41 98-139 4-47 (253)
419 cd08293 PTGR2 Prostaglandin re 29.1 1.2E+02 0.0025 25.7 5.0 39 101-139 155-196 (345)
420 PRK07877 hypothetical protein; 29.1 59 0.0013 32.1 3.5 36 98-133 104-141 (722)
421 PRK08277 D-mannonate oxidoredu 28.8 1.9E+02 0.004 23.7 6.1 41 98-139 7-50 (278)
422 PRK07062 short chain dehydroge 28.8 1.9E+02 0.0041 23.4 6.1 41 98-139 5-48 (265)
423 PRK11730 fadB multifunctional 28.7 1.1E+02 0.0024 29.9 5.2 44 102-147 314-359 (715)
424 PRK05600 thiamine biosynthesis 28.7 72 0.0016 28.7 3.7 36 98-133 38-75 (370)
425 PRK07231 fabG 3-ketoacyl-(acyl 28.7 2.4E+02 0.0051 22.3 6.5 40 99-139 3-45 (251)
426 PRK08213 gluconate 5-dehydroge 28.7 1.7E+02 0.0036 23.7 5.7 40 98-139 9-52 (259)
427 PF03269 DUF268: Caenorhabditi 28.4 92 0.002 25.4 3.9 33 101-133 2-34 (177)
428 PF01795 Methyltransf_5: MraW 28.3 89 0.0019 27.7 4.2 43 98-140 18-61 (310)
429 PRK05876 short chain dehydroge 28.3 1.6E+02 0.0035 24.4 5.6 40 99-139 4-46 (275)
430 PRK05993 short chain dehydroge 28.2 1.5E+02 0.0032 24.5 5.4 38 101-139 4-44 (277)
431 cd01492 Aos1_SUMO Ubiquitin ac 28.2 65 0.0014 26.1 3.1 34 99-133 19-55 (197)
432 COG0286 HsdM Type I restrictio 27.8 1.6E+02 0.0034 27.5 5.9 50 100-150 186-240 (489)
433 PRK08945 putative oxoacyl-(acy 27.5 1.8E+02 0.0039 23.2 5.7 40 98-139 9-52 (247)
434 PRK06196 oxidoreductase; Provi 27.4 2E+02 0.0044 24.3 6.2 41 97-139 22-66 (315)
435 TIGR01035 hemA glutamyl-tRNA r 27.4 1.7E+02 0.0037 26.5 6.0 38 98-137 177-218 (417)
436 cd08245 CAD Cinnamyl alcohol d 27.3 1.3E+02 0.0029 25.1 5.0 42 98-140 160-203 (330)
437 PRK08293 3-hydroxybutyryl-CoA 26.9 1.7E+02 0.0036 24.8 5.5 38 102-140 4-43 (287)
438 PRK07856 short chain dehydroge 26.9 1.5E+02 0.0032 23.9 5.1 36 98-134 3-41 (252)
439 PRK01390 murD UDP-N-acetylmura 26.9 1E+02 0.0023 27.8 4.5 38 99-137 7-46 (460)
440 cd08230 glucose_DH Glucose deh 26.8 1.3E+02 0.0028 25.9 4.9 40 99-139 171-215 (355)
441 PRK07454 short chain dehydroge 26.8 1.8E+02 0.0039 23.1 5.5 38 100-139 5-46 (241)
442 PRK08217 fabG 3-ketoacyl-(acyl 26.5 2.4E+02 0.0053 22.2 6.2 40 99-139 3-45 (253)
443 PRK06138 short chain dehydroge 26.5 2.1E+02 0.0045 22.8 5.8 40 98-138 2-44 (252)
444 TIGR01832 kduD 2-deoxy-D-gluco 26.5 1.4E+02 0.003 23.9 4.7 35 98-133 2-39 (248)
445 PRK04690 murD UDP-N-acetylmura 26.4 93 0.002 28.5 4.1 34 99-133 6-41 (468)
446 PRK07326 short chain dehydroge 26.2 2E+02 0.0044 22.6 5.7 39 99-139 4-46 (237)
447 COG1748 LYS9 Saccharopine dehy 25.8 1.5E+02 0.0031 27.2 5.2 37 102-140 2-42 (389)
448 TIGR01809 Shik-DH-AROM shikima 25.8 1.7E+02 0.0038 24.9 5.5 42 98-139 122-165 (282)
449 PRK05866 short chain dehydroge 25.7 2.3E+02 0.0049 23.9 6.1 42 97-139 36-80 (293)
450 cd08255 2-desacetyl-2-hydroxye 25.7 1.3E+02 0.0028 24.5 4.5 42 98-139 95-138 (277)
451 PRK07066 3-hydroxybutyryl-CoA 25.7 1.8E+02 0.0039 25.7 5.6 37 102-139 8-46 (321)
452 PRK08993 2-deoxy-D-gluconate 3 25.4 1.4E+02 0.0031 24.1 4.7 35 98-133 7-44 (253)
453 cd08240 6_hydroxyhexanoate_dh_ 25.4 1.3E+02 0.0029 25.5 4.7 38 100-139 175-216 (350)
454 PRK09273 hypothetical protein; 25.3 1.3E+02 0.0028 25.3 4.4 36 105-140 67-102 (211)
455 PRK06171 sorbitol-6-phosphate 25.0 1.3E+02 0.0029 24.3 4.5 35 98-133 6-43 (266)
456 PRK07825 short chain dehydroge 24.8 2.6E+02 0.0057 22.7 6.3 40 99-139 3-45 (273)
457 KOG0821 Predicted ribosomal RN 24.6 1.2E+02 0.0027 26.2 4.2 44 94-137 44-87 (326)
458 PRK07530 3-hydroxybutyryl-CoA 24.5 2E+02 0.0043 24.3 5.6 38 102-140 5-44 (292)
459 PRK05708 2-dehydropantoate 2-r 24.5 1.1E+02 0.0024 26.3 4.0 38 102-140 3-42 (305)
460 cd01491 Ube1_repeat1 Ubiquitin 24.4 66 0.0014 28.0 2.6 35 99-133 17-53 (286)
461 TIGR00571 dam DNA adenine meth 24.3 1.7E+02 0.0038 24.7 5.1 48 83-138 13-60 (266)
462 cd05211 NAD_bind_Glu_Leu_Phe_V 24.3 3E+02 0.0066 22.7 6.5 35 97-133 19-57 (217)
463 PRK05717 oxidoreductase; Valid 24.2 2.5E+02 0.0054 22.6 6.0 40 96-136 5-47 (255)
464 PRK09260 3-hydroxybutyryl-CoA 24.1 1.9E+02 0.0041 24.4 5.4 35 103-140 3-41 (288)
465 PTZ00245 ubiquitin activating 24.1 82 0.0018 27.6 3.1 46 99-150 24-72 (287)
466 PRK07666 fabG 3-ketoacyl-(acyl 24.0 2.3E+02 0.0051 22.4 5.7 39 99-139 5-47 (239)
467 cd01078 NAD_bind_H4MPT_DH NADP 23.7 3.6E+02 0.0078 21.1 7.0 43 96-139 23-68 (194)
468 PRK08085 gluconate 5-dehydroge 23.5 3.1E+02 0.0067 22.0 6.4 41 98-139 6-49 (254)
469 TIGR00518 alaDH alanine dehydr 23.4 1.6E+02 0.0035 26.3 5.0 40 99-139 165-206 (370)
470 PRK11154 fadJ multifunctional 23.3 1.7E+02 0.0038 28.5 5.5 45 102-148 310-357 (708)
471 PRK05579 bifunctional phosphop 23.2 3.6E+02 0.0078 24.5 7.2 49 82-133 171-238 (399)
472 PRK15057 UDP-glucose 6-dehydro 22.9 1.6E+02 0.0035 26.6 4.9 30 110-140 7-39 (388)
473 cd05285 sorbitol_DH Sorbitol d 22.8 1.8E+02 0.0039 24.7 5.0 42 98-139 160-203 (343)
474 PRK07774 short chain dehydroge 22.7 2.6E+02 0.0057 22.2 5.7 39 99-139 4-46 (250)
475 PRK07478 short chain dehydroge 22.6 3.2E+02 0.007 21.8 6.3 41 98-139 3-46 (254)
476 PRK00258 aroE shikimate 5-dehy 22.5 4.3E+02 0.0094 22.3 7.3 43 97-139 119-163 (278)
477 COG1179 Dinucleotide-utilizing 22.3 1.1E+02 0.0024 26.5 3.5 36 99-134 28-65 (263)
478 PRK06194 hypothetical protein; 22.0 2.8E+02 0.0062 22.6 6.0 40 99-139 4-46 (287)
479 PRK12481 2-deoxy-D-gluconate 3 22.0 1.8E+02 0.004 23.5 4.7 35 98-133 5-42 (251)
480 TIGR02440 FadJ fatty oxidation 21.9 1.7E+02 0.0037 28.5 5.2 45 102-148 305-352 (699)
481 PRK01368 murD UDP-N-acetylmura 21.9 1E+02 0.0023 28.2 3.5 34 100-134 5-39 (454)
482 TIGR03206 benzo_BadH 2-hydroxy 21.8 2.7E+02 0.0058 22.1 5.6 40 99-139 1-43 (250)
483 KOG3045 Predicted RNA methylas 21.7 68 0.0015 28.3 2.1 29 100-132 180-208 (325)
484 COG1743 Adenine-specific DNA m 21.7 97 0.0021 31.1 3.4 41 98-139 88-128 (875)
485 cd01486 Apg7 Apg7 is an E1-lik 21.4 1.1E+02 0.0023 27.2 3.3 31 103-133 1-33 (307)
486 PRK07576 short chain dehydroge 21.2 3.3E+02 0.0072 22.2 6.2 41 98-139 6-49 (264)
487 PLN02353 probable UDP-glucose 21.1 92 0.002 29.0 3.0 36 103-140 3-43 (473)
488 PRK06523 short chain dehydroge 21.0 2.1E+02 0.0045 23.0 4.9 35 98-133 6-43 (260)
489 PRK05808 3-hydroxybutyryl-CoA 21.0 2.4E+02 0.0051 23.7 5.3 33 103-138 5-41 (282)
490 PF08515 TGF_beta_GS: Transfor 20.7 47 0.001 19.3 0.6 10 108-117 14-23 (29)
491 PRK07677 short chain dehydroge 20.6 2.7E+02 0.0059 22.3 5.5 38 101-139 1-41 (252)
492 PRK06841 short chain dehydroge 20.5 3.4E+02 0.0074 21.6 6.0 37 98-135 12-51 (255)
493 PRK08628 short chain dehydroge 20.3 2.9E+02 0.0062 22.2 5.5 39 97-136 3-44 (258)
494 PRK15182 Vi polysaccharide bio 20.1 1.3E+02 0.0028 27.5 3.7 36 102-140 7-45 (425)
495 KOG2918 Carboxymethyl transfer 20.1 1.3E+02 0.0028 27.0 3.6 36 100-135 87-125 (335)
No 1
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=99.87 E-value=2.6e-23 Score=178.07 Aligned_cols=147 Identities=51% Similarity=0.889 Sum_probs=129.6
Q ss_pred ccccccCCCCCCCCCCCCCc--ccccCCCCCCCCc---cccceeccCCeeeeccccchhhhcCCCCCCCCCCccCCCccc
Q 030031 3 GLSFLDSKEDETPLPPPPPS--LEVLPSEVSPSLN---FTLEPVNLGELTLLKGRVSTKEVLGLPNSDLVPGVYEGGLKL 77 (184)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~p~--~e~l~~~~~~~~~---~~~e~v~~~~~~~~kg~~~~~~~~~~~~sd~~~~~ye~G~~~ 77 (184)
|+||+++ ++...++|+|+ +|.+.++.+..-+ |..+...+++.++.++..+.+.++.+.++|.+|++||||+++
T Consensus 17 ~~~~~e~--s~~~~~~~~~~~~~e~~~~~~~~~~~~~~f~~~~l~~g~~~l~~~~~~~~~i~~~~~sDl~p~vyEGg~k~ 94 (282)
T KOG2920|consen 17 GLGFFES--SEKFLPSPPPPHPVEHIRSKLTIGRKSSGFDIKLLLVGSHTLWKHLDSIEEIILLNHSDLVPGVYEGGLKL 94 (282)
T ss_pred ccccccc--cccccCCCCCccccccchhhcccccccccchhhhhhhhHHHHhhcccccchhhcccccccCCceeecceEE
Confidence 6788888 77777777777 8888888754444 566666678888999999988889999999999999999999
Q ss_pred cccHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCCCCC
Q 030031 78 WEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVPKKL 152 (184)
Q Consensus 78 We~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~~~ 152 (184)
|+|+.++..++.+++ ...+.+.+|+|||||||+|++++++.+.|+..++++|+|.+.++..+.||+..|.....
T Consensus 95 wecS~dl~~~l~~e~-~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~ 168 (282)
T KOG2920|consen 95 WECSVDLLPYLKEEI-GAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGV 168 (282)
T ss_pred eecHHHHHHHHHHHh-hhheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhh
Confidence 999999999999887 66778999999999999999999999999889999999999999999999999988874
No 2
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.53 E-value=1.7e-14 Score=115.71 Aligned_cols=75 Identities=40% Similarity=0.601 Sum_probs=51.7
Q ss_pred CCccccccHHHHHHHHHHHhhc--CCCCCCCCeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 73 GGLKLWEGSIDLVKALRLDVQN--GNISFSGKRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 73 ~G~~~We~s~~La~~l~~~i~~--~~~~~~gkrVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
.|.++|+++..|++|+.+.... ....+++++|||||||+|++|+.+++. ++.+|++||+++ .++.+. .|++.|..
T Consensus 16 ~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~-~Ni~~N~~ 93 (173)
T PF10294_consen 16 TGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLR-RNIELNGS 93 (173)
T ss_dssp -------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHH-HHHHTT--
T ss_pred CcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHH-HHHHhccc
Confidence 4899999999999999985321 245688999999999999999999998 777999999998 887665 99999984
No 3
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.16 E-value=1.2e-10 Score=101.24 Aligned_cols=70 Identities=23% Similarity=0.228 Sum_probs=57.3
Q ss_pred cccccHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCCCCC
Q 030031 76 KLWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVPKKL 152 (184)
Q Consensus 76 ~~We~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~~~ 152 (184)
-..+.+....++|.+. ..+|++|||+|||||+++|.++++||++|+++|+++.+++.+. .|+..|.....
T Consensus 143 G~H~TT~lcl~~l~~~------~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~-~N~~~N~~~~~ 212 (295)
T PF06325_consen 143 GHHPTTRLCLELLEKY------VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAAR-ENAELNGVEDR 212 (295)
T ss_dssp SHCHHHHHHHHHHHHH------SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHH-HHHHHTT-TTC
T ss_pred CCCHHHHHHHHHHHHh------ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHH-HHHHHcCCCee
Confidence 3455556666676664 4678999999999999999999999999999999999998665 99999987763
No 4
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=3.7e-10 Score=98.36 Aligned_cols=68 Identities=24% Similarity=0.225 Sum_probs=56.1
Q ss_pred ccccHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCCCC
Q 030031 77 LWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVPKK 151 (184)
Q Consensus 77 ~We~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~~ 151 (184)
.-+.+....+++.+. ..+|++|||+|||+|+++|.+++.||++|+++|++|.+++.. +.|+++|....
T Consensus 145 ~HpTT~lcL~~Le~~------~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa-~eNa~~N~v~~ 212 (300)
T COG2264 145 THPTTSLCLEALEKL------LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAA-RENARLNGVEL 212 (300)
T ss_pred CChhHHHHHHHHHHh------hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHH-HHHHHHcCCch
Confidence 334444445555553 358999999999999999999999999999999999999855 59999999884
No 5
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=99.06 E-value=9.3e-11 Score=96.58 Aligned_cols=77 Identities=29% Similarity=0.348 Sum_probs=66.9
Q ss_pred CCccCCCccccccHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHh
Q 030031 68 PGVYEGGLKLWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIAN 147 (184)
Q Consensus 68 ~~~ye~G~~~We~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N 147 (184)
|..| |...|.+.+.+++|+.. ++...+||+|||+|+|+|+++|.+++.|++.|+.+|+.+..+..+. .|+..|
T Consensus 53 pPpf--wa~~WagG~~lAR~i~~----~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~-lNa~an 125 (218)
T COG3897 53 PPPF--WAFAWAGGQVLARYIDD----HPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIR-LNAAAN 125 (218)
T ss_pred CchH--HHHHHhhhHHHHHHHhc----CccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhh-cchhhc
Confidence 4567 89999999999999987 5677999999999999999999999999999999999987776544 788888
Q ss_pred CCCC
Q 030031 148 VPKK 151 (184)
Q Consensus 148 ~~~~ 151 (184)
...-
T Consensus 126 gv~i 129 (218)
T COG3897 126 GVSI 129 (218)
T ss_pred ccee
Confidence 7653
No 6
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=1.5e-09 Score=88.90 Aligned_cols=66 Identities=26% Similarity=0.278 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 83 DLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 83 ~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
.++.++..... ..-+.+|+.|+|||||||.+++.++.+|+++|+++|+++++++.+. .|+..+...
T Consensus 29 ~~Aa~il~~a~-~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r-~N~~~l~g~ 94 (198)
T COG2263 29 PLAAYILWVAY-LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIAR-ANAEELLGD 94 (198)
T ss_pred HHHHHHHHHHH-HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHH-HHHHhhCCc
Confidence 34555544332 2446899999999999999999999999999999999999999775 888874443
No 7
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.87 E-value=8.2e-09 Score=75.15 Aligned_cols=45 Identities=29% Similarity=0.384 Sum_probs=38.4
Q ss_pred CCCeEEEEccccCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHH
Q 030031 100 SGKRVLELGCGHGLPGIFACL-EGAAVIHFQEFNAEVLRYLTIPNVI 145 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~~~Nv~ 145 (184)
++++|||+|||+|..++.+++ ....+|+++|+|++|++.+. .|+.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~-~~~~ 46 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIAR-ERAA 46 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHH-HHHH
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHH-HHHH
Confidence 578999999999999999998 23448999999999999876 6663
No 8
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.85 E-value=1.8e-08 Score=80.16 Aligned_cols=62 Identities=27% Similarity=0.427 Sum_probs=51.1
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCC-eEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 80 GSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAA-VIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 80 ~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~-~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
++..|++++... ++++|||+|||+|.+++.+++.+.. +|+++|+++.+++.+. .|+..|...
T Consensus 19 ~t~lL~~~l~~~--------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~-~n~~~n~~~ 81 (170)
T PF05175_consen 19 GTRLLLDNLPKH--------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAK-RNAERNGLE 81 (170)
T ss_dssp HHHHHHHHHHHH--------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHH-HHHHHTTCT
T ss_pred HHHHHHHHHhhc--------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH-HHHHhcCcc
Confidence 445566666642 6789999999999999999988764 7999999999998765 999999766
No 9
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.77 E-value=1.6e-08 Score=89.34 Aligned_cols=59 Identities=25% Similarity=0.401 Sum_probs=50.2
Q ss_pred HhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCCCC
Q 030031 91 DVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVPKK 151 (184)
Q Consensus 91 ~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~~ 151 (184)
.+..+...|++|.|||+|||||++++++|+.||++|+++|.+. +.+.+ ...+..|....
T Consensus 51 ~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a-~~iv~~N~~~~ 109 (346)
T KOG1499|consen 51 AILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFA-RKIVKDNGLED 109 (346)
T ss_pred HHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHH-HHHHHhcCccc
Confidence 3445677899999999999999999999999999999999984 55544 58888888776
No 10
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.76 E-value=2.7e-08 Score=83.85 Aligned_cols=65 Identities=25% Similarity=0.303 Sum_probs=52.1
Q ss_pred cccHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 78 WEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 78 We~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
.+.+..+.+.+.+. ..++++|||+|||+|.+++.+++.|+.+|+++|+|+.|++.+. .|+..|..
T Consensus 103 h~tt~~~l~~l~~~------~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~-~n~~~~~~ 167 (250)
T PRK00517 103 HPTTRLCLEALEKL------VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAAR-ENAELNGV 167 (250)
T ss_pred CHHHHHHHHHHHhh------cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHH-HHHHHcCC
Confidence 44444455555432 3578999999999999999999999878999999999999775 89988865
No 11
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.75 E-value=4e-08 Score=84.62 Aligned_cols=51 Identities=25% Similarity=0.343 Sum_probs=45.8
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
.++++|||+|||+|.+++.+++.|+.+|+++|+++.|++.+. .|+..|...
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~-~n~~~n~~~ 208 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESAR-KNAELNQVS 208 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHH-HHHHHcCCC
Confidence 468999999999999999999999889999999999999765 899988654
No 12
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=3.8e-08 Score=78.23 Aligned_cols=68 Identities=19% Similarity=0.327 Sum_probs=55.1
Q ss_pred ccccHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHH
Q 030031 77 LWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVI 145 (184)
Q Consensus 77 ~We~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~ 145 (184)
.+...-.+|.-+...|.+..-+++||+++|||||+|.+++.++..++..|+|.|+++++|+.++ .|.+
T Consensus 25 QY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~-rNae 92 (185)
T KOG3420|consen 25 QYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFT-RNAE 92 (185)
T ss_pred hCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHh-hchH
Confidence 4445555566666555556667999999999999999999888889999999999999999887 6654
No 13
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.64 E-value=8.1e-08 Score=78.27 Aligned_cols=51 Identities=25% Similarity=0.281 Sum_probs=46.7
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
+++++||||+||+|.+|+.++.+|+++|+++|.++.+++.+. .|++.|...
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~-~N~~~~~~~ 98 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLK-ENLALLKSG 98 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHhCCc
Confidence 678999999999999999999999999999999999999775 999998654
No 14
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.64 E-value=1.4e-07 Score=79.29 Aligned_cols=58 Identities=26% Similarity=0.176 Sum_probs=48.5
Q ss_pred ccccHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 030031 77 LWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRY 138 (184)
Q Consensus 77 ~We~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~ 138 (184)
++.++..|...+... ...+++++|||+|||||.++..+++.|+++|+++|.+++|+..
T Consensus 56 vsr~~~kL~~~l~~~----~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 56 VSRGGEKLKEALEEF----NIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred hhhhHHHHHHHHHhc----CCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 556666677776653 3467999999999999999999999999999999999988764
No 15
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.59 E-value=2.3e-07 Score=73.98 Aligned_cols=49 Identities=29% Similarity=0.317 Sum_probs=43.1
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
.++++|||+|||+|.+++.++..+. +|+++|++++|++.+. .|+..|..
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~-~~~~~~~~ 66 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELR-ENAKLNNV 66 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHH-HHHHHcCC
Confidence 5668999999999999999998887 8999999999999775 88887754
No 16
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.54 E-value=3.3e-07 Score=74.76 Aligned_cols=49 Identities=22% Similarity=0.393 Sum_probs=41.1
Q ss_pred CCCeEEEEccccCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 100 SGKRVLELGCGHGLPGIFACL-EGAAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
++++|||+|||+|..++.+++ ....+|+++|.+++|++.++ .|++.|..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~-~~~~~~~l 94 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLR-EVAAELGL 94 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHH-HHHHHcCC
Confidence 388999999999999997775 44568999999999999776 77877654
No 17
>PRK14967 putative methyltransferase; Provisional
Probab=98.54 E-value=3.7e-07 Score=75.49 Aligned_cols=64 Identities=23% Similarity=0.248 Sum_probs=49.8
Q ss_pred cHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 80 GSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 80 ~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
.+..+++.+... ...++.+|||+|||+|.+++.+++.++.+|+++|+++.+++.+. .|+..|..
T Consensus 21 ds~~l~~~l~~~-----~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~-~n~~~~~~ 84 (223)
T PRK14967 21 DTQLLADALAAE-----GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSAR-LNALLAGV 84 (223)
T ss_pred cHHHHHHHHHhc-----ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHH-HHHHHhCC
Confidence 445566666542 12457899999999999999998887778999999999998765 88877643
No 18
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.54 E-value=2e-07 Score=75.45 Aligned_cols=50 Identities=24% Similarity=0.420 Sum_probs=41.1
Q ss_pred CCCCeEEEEccccCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEG-AAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~g-a~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
+++++|||+|||+|.+++.++..+ ..+|+++|.+++|++.+. .|++.|..
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~-~~~~~~~~ 91 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLR-EVKAELGL 91 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHH-HHHHHhCC
Confidence 458999999999999999877654 458999999999998765 77776643
No 19
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.52 E-value=3.1e-07 Score=74.72 Aligned_cols=47 Identities=19% Similarity=0.373 Sum_probs=40.2
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHh
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIAN 147 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N 147 (184)
.++.+|||+|||+|..++.+++.|. +|+++|+|+.|++.+. .+...|
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~-~~~~~~ 75 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVL-DMKARE 75 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHH-HHHHHh
Confidence 4567999999999999999999886 8999999999999776 455443
No 20
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.52 E-value=9.5e-08 Score=81.91 Aligned_cols=41 Identities=22% Similarity=0.392 Sum_probs=37.5
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
+.|++|||+|||+|++++-+++.|+ +|+|+|.+++|++.+.
T Consensus 88 ~~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~ 128 (282)
T KOG1270|consen 88 LLGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVAN 128 (282)
T ss_pred cCCceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHH
Confidence 4468999999999999999999998 8999999999998665
No 21
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.51 E-value=3.9e-07 Score=70.60 Aligned_cols=50 Identities=26% Similarity=0.292 Sum_probs=39.2
Q ss_pred CCCeEEEEccccCHHHHHHH-Hc-CCCeEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 100 SGKRVLELGCGHGLPGIFAC-LE-GAAVIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa-~~-ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
++++|||+|||+|..++.++ +. ...+|+++|+|++|++.+. .+++.+...
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~-~~~~~~~~~ 54 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAK-KRAKELGLD 54 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHH-HHHHHTTST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhh-ccccccccc
Confidence 57899999999999999888 43 2458999999999999886 555554443
No 22
>PRK14968 putative methyltransferase; Provisional
Probab=98.49 E-value=6.6e-07 Score=70.62 Aligned_cols=65 Identities=26% Similarity=0.246 Sum_probs=51.4
Q ss_pred cccccHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 76 KLWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 76 ~~We~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
..++.+..+.+++.. .++++|||+|||+|..++.++..++ +|+++|++++|++.+. .|+..|...
T Consensus 7 ~p~~~~~~l~~~~~~--------~~~~~vLd~G~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~-~~~~~~~~~ 71 (188)
T PRK14968 7 EPAEDSFLLAENAVD--------KKGDRVLEVGTGSGIVAIVAAKNGK-KVVGVDINPYAVECAK-CNAKLNNIR 71 (188)
T ss_pred CcchhHHHHHHhhhc--------cCCCEEEEEccccCHHHHHHHhhcc-eEEEEECCHHHHHHHH-HHHHHcCCC
Confidence 356666666665542 4678999999999999998888864 8999999999998775 888776654
No 23
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.49 E-value=4.4e-07 Score=73.89 Aligned_cols=48 Identities=21% Similarity=0.327 Sum_probs=41.1
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANV 148 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~ 148 (184)
.++++|||+|||+|..++.+++.|. +|+++|+|++|++.+. .++..+.
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~-~~~~~~~ 76 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLE-RIKAAEN 76 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHH-HHHHHcC
Confidence 4678999999999999999999887 8999999999999776 5555543
No 24
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.48 E-value=2.2e-07 Score=78.72 Aligned_cols=44 Identities=23% Similarity=0.378 Sum_probs=40.4
Q ss_pred CCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHH
Q 030031 98 SFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIP 142 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~ 142 (184)
.+.|++|||+|||.|+++.-+|+.|+ .|+++|.++++|+.++..
T Consensus 57 ~l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~h 100 (243)
T COG2227 57 DLPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLH 100 (243)
T ss_pred CCCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHh
Confidence 37899999999999999999999997 799999999999988733
No 25
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.46 E-value=3.8e-07 Score=77.70 Aligned_cols=70 Identities=24% Similarity=0.265 Sum_probs=56.9
Q ss_pred CccccccHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHhCCCCC
Q 030031 74 GLKLWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLTIPNVIANVPKKL 152 (184)
Q Consensus 74 G~~~We~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~~~ 152 (184)
|++.=..++.|+.|..- ...++|||||||+|+++++++++ ...+|+++|+.++|.+.+. .|+..|....+
T Consensus 26 ~~~~~~DaiLL~~~~~~--------~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~-~nv~ln~l~~r 96 (248)
T COG4123 26 GFRYGTDAILLAAFAPV--------PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQ-RNVALNPLEER 96 (248)
T ss_pred ccccccHHHHHHhhccc--------ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHH-HHHHhCcchhc
Confidence 56666677888888653 33789999999999999999987 5468999999999999776 99998765543
No 26
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.46 E-value=1e-06 Score=64.64 Aligned_cols=49 Identities=24% Similarity=0.190 Sum_probs=41.0
Q ss_pred CCCCeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHhC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLTIPNVIANV 148 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~~~Nv~~N~ 148 (184)
.++++|||+|||+|..++.+++. +..+|+++|+++.+++.+. .|+..+.
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~-~~~~~~~ 67 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIE-RNARRFG 67 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHH-HHHHHhC
Confidence 35779999999999999988775 4468999999999999776 7777654
No 27
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=6.6e-07 Score=77.22 Aligned_cols=46 Identities=28% Similarity=0.359 Sum_probs=40.9
Q ss_pred eEEEEccccCHHHHHHHHcCC-CeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 103 RVLELGCGHGLPGIFACLEGA-AVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 103 rVLELGcGtGl~gi~aa~~ga-~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
+|||+|||||.+++.+++.+. ..|+++|+|+.+++.+. .|+..|..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~-~Na~~~~l 159 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAR-ENAERNGL 159 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHH-HHHHHcCC
Confidence 899999999999999888654 48999999999999765 99999875
No 28
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.44 E-value=5.2e-07 Score=74.35 Aligned_cols=50 Identities=24% Similarity=0.192 Sum_probs=43.4
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
.++++|||||||+|.+++.++..++.+|+++|.++++++.+. .|+..|..
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~-~Nl~~~~~ 101 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLI-KNLATLKA 101 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHH-HHHHHhCC
Confidence 467899999999999999776667789999999999999775 89988754
No 29
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.42 E-value=1.3e-06 Score=70.05 Aligned_cols=50 Identities=24% Similarity=0.257 Sum_probs=42.0
Q ss_pred CCCCeEEEEccccCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEG-AAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~g-a~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
.++.+|||+|||+|.+++.+++.+ ..+|+++|.++++++.+. .|+..|..
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~-~n~~~~~~ 80 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIK-ENRQRFGC 80 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHhCC
Confidence 467899999999999999888754 358999999999999775 88877643
No 30
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.42 E-value=1.3e-06 Score=76.74 Aligned_cols=46 Identities=26% Similarity=0.447 Sum_probs=40.3
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHH
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIA 146 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~ 146 (184)
.++.+|||+|||+|.+++.+++.|. +|+++|+|+.|++.+. .|...
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~-~~~~~ 188 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAE-RRAKE 188 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHH-HHHHh
Confidence 4688999999999999999999886 7999999999999776 66554
No 31
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=9.6e-07 Score=77.02 Aligned_cols=51 Identities=29% Similarity=0.505 Sum_probs=44.4
Q ss_pred CCeEEEEccccCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHhCCCCC
Q 030031 101 GKRVLELGCGHGLPGIFACLEG-AAVIHFQEFNAEVLRYLTIPNVIANVPKKL 152 (184)
Q Consensus 101 gkrVLELGcGtGl~gi~aa~~g-a~~V~~tD~s~~~l~~l~~~Nv~~N~~~~~ 152 (184)
+.+|||+|||.|.+|+.+++.. ..+|+.+|.|..+++..+ .|+..|...+.
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar-~Nl~~N~~~~~ 210 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESAR-KNLAANGVENT 210 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHH-HhHHHcCCCcc
Confidence 3499999999999999988865 568999999999999765 99999987764
No 32
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.40 E-value=8.4e-07 Score=77.28 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=43.5
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
.++.+|||+|||+|..++.+++.+. +|+++|+++.|++.+. .|+..|..
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~~-~V~gvD~s~~av~~A~-~n~~~~~l 220 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPGM-QLTGIEISAEAIACAK-QSAAELGL 220 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcCC-EEEEEeCCHHHHHHHH-HHHHHcCC
Confidence 4578999999999999999999875 8999999999999775 99988765
No 33
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.39 E-value=9.9e-07 Score=77.44 Aligned_cols=58 Identities=21% Similarity=0.297 Sum_probs=44.6
Q ss_pred ccccHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHh
Q 030031 77 LWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 77 ~We~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
-|.+.+.....+.+ ....+|++|||+|||+|.....++..|+..|+++|.|+.|+..+
T Consensus 103 e~~s~~~~~~~l~~-----l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~ 160 (314)
T TIGR00452 103 EWRSDIKWDRVLPH-----LSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQF 160 (314)
T ss_pred HHHHHHHHHHHHHh-----cCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHH
Confidence 45544443344332 33578999999999999999988888888899999999998754
No 34
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.39 E-value=6.8e-07 Score=76.75 Aligned_cols=49 Identities=22% Similarity=0.373 Sum_probs=41.6
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
.++++|||+|||+|..++.+++.|. +|+++|+|+.|++.+. .|+..+..
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~-~~~~~~~l 167 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQ-EIAEKENL 167 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHH-HHHHHcCC
Confidence 4567999999999999999999886 8999999999999775 66665443
No 35
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.39 E-value=1.7e-06 Score=70.91 Aligned_cols=49 Identities=27% Similarity=0.503 Sum_probs=41.3
Q ss_pred CCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhC
Q 030031 98 SFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANV 148 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~ 148 (184)
..++++|||+|||+|..+..++..++ +|+++|+|++|++.+. .++..+.
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~-~~~~~~~ 101 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMAR-NRAQGRD 101 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHH-HHHHhcC
Confidence 35789999999999999999988876 8999999999998776 5555443
No 36
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.38 E-value=1.1e-06 Score=73.35 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=35.8
Q ss_pred CCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 100 SGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
++.+|||+|||+|..+..++..+. +|+++|+|++|++.+.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~ 81 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQAR 81 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHH
Confidence 567999999999999988888875 8999999999998775
No 37
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.38 E-value=6.6e-07 Score=80.40 Aligned_cols=48 Identities=25% Similarity=0.431 Sum_probs=41.3
Q ss_pred CCeEEEEccccCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 101 GKRVLELGCGHGLPGIFACLEG-AAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 101 gkrVLELGcGtGl~gi~aa~~g-a~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
+.+|||||||+|.+++.+++.+ ..+|+++|.|+.|++.+. .|++.|..
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~-~N~~~n~~ 277 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSR-LNVETNMP 277 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCc
Confidence 4699999999999999888763 458999999999999765 99998864
No 38
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.36 E-value=1.5e-06 Score=79.01 Aligned_cols=50 Identities=24% Similarity=0.152 Sum_probs=43.6
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
.++.+|||+|||+|..++.+++.++ +|+++|.|++|++.+. .|+..|...
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~~-~V~gvD~s~~al~~A~-~n~~~~~~~ 345 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQAA-EVVGVEGVEAMVERAR-ENARRNGLD 345 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhCC-EEEEEeCCHHHHHHHH-HHHHHcCCC
Confidence 4678999999999999999988864 8999999999999876 899887653
No 39
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.36 E-value=1.1e-06 Score=64.52 Aligned_cols=48 Identities=31% Similarity=0.395 Sum_probs=41.9
Q ss_pred CCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 101 GKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 101 gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
|.+|||+|||+|...+.+++.+..+++++|+++..++.+. .|+..+..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~-~~~~~~~~ 48 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELAR-RNLPRNGL 48 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHH-HHCHHCTT
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHH-HHHHHccC
Confidence 5689999999999999999988669999999999998765 77777654
No 40
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.35 E-value=2.4e-06 Score=75.32 Aligned_cols=68 Identities=19% Similarity=0.128 Sum_probs=47.4
Q ss_pred ccHHHHHHHHHHHhhcC---CC-CCCCCeEEEEccccCHHHHHHH-HcCCCeEEEEeCCHHHHHHhhHHHHHHh
Q 030031 79 EGSIDLVKALRLDVQNG---NI-SFSGKRVLELGCGHGLPGIFAC-LEGAAVIHFQEFNAEVLRYLTIPNVIAN 147 (184)
Q Consensus 79 e~s~~La~~l~~~i~~~---~~-~~~gkrVLELGcGtGl~gi~aa-~~ga~~V~~tD~s~~~l~~l~~~Nv~~N 147 (184)
+...+...|+.+.+... .. .-++.++||+|||+|.+...++ +....+++++|+++.+++.+. .|+..|
T Consensus 89 P~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~-~Nv~~N 161 (321)
T PRK11727 89 PGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQ-AIISAN 161 (321)
T ss_pred CcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHH-HHHHhc
Confidence 44556666666654321 11 1245799999999986665444 433348999999999999776 999999
No 41
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.34 E-value=1.7e-06 Score=75.99 Aligned_cols=42 Identities=24% Similarity=0.344 Sum_probs=37.8
Q ss_pred CCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHh
Q 030031 98 SFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
.++|++|||+|||+|..++.++..|+.+|+++|.|+.|+...
T Consensus 120 ~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~ 161 (322)
T PRK15068 120 PLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQF 161 (322)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHH
Confidence 468999999999999999999998888899999999988654
No 42
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.32 E-value=1.2e-06 Score=77.09 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=40.1
Q ss_pred CCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHH
Q 030031 98 SFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIA 146 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~ 146 (184)
..++.+|||+|||+|.+++.+++.|+ +|+++|.+++|++.+. .+...
T Consensus 129 ~~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar-~~~~~ 175 (322)
T PLN02396 129 PFEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIAR-LHADM 175 (322)
T ss_pred CCCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHH-HHHHh
Confidence 35788999999999999999998886 7999999999999776 44443
No 43
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.32 E-value=3e-06 Score=68.54 Aligned_cols=50 Identities=18% Similarity=0.098 Sum_probs=41.5
Q ss_pred CCCCeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
.++.+|||+|||+|..++.+++. ...+|+++|.+++|++.+. .|+..+..
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~-~n~~~~~~ 89 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIR-RNCDRFGV 89 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHhCC
Confidence 46789999999999999987754 3358999999999999775 88887654
No 44
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.32 E-value=1.1e-06 Score=84.36 Aligned_cols=51 Identities=24% Similarity=0.234 Sum_probs=46.5
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
.+|++|||+|||||..++.+++.|+++|+++|+|+.+++.+. .|+..|...
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~-~N~~~ng~~ 587 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAE-RNFALNGLS 587 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHhCCC
Confidence 468999999999999999999999988999999999999775 999999764
No 45
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.32 E-value=1.2e-06 Score=79.14 Aligned_cols=51 Identities=24% Similarity=0.143 Sum_probs=45.8
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
.++++|||+|||||..++.++..|+.+|+++|.|+.+++.+. .|+..|...
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~-~N~~~Ngl~ 269 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIAR-QNVELNKLD 269 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCC
Confidence 468999999999999999888888889999999999999775 999999753
No 46
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.29 E-value=2e-06 Score=70.73 Aligned_cols=42 Identities=21% Similarity=0.449 Sum_probs=35.9
Q ss_pred CCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 98 SFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
.++..++||||||.|.-++++++.|. .|+++|.|+..++.+.
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~ 69 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQ 69 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHH
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHH
Confidence 45788999999999999999999999 7999999999998765
No 47
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.28 E-value=2e-06 Score=72.33 Aligned_cols=47 Identities=23% Similarity=0.264 Sum_probs=40.2
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHh
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIAN 147 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N 147 (184)
.++.+|||+|||+|..++.++..|. +|+++|+|++|++.+. .++..+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~-~~~~~~ 89 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAK-QAAEAK 89 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHH-HHHHhc
Confidence 3567999999999999999999886 8999999999999776 566543
No 48
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.27 E-value=3.4e-06 Score=68.45 Aligned_cols=50 Identities=20% Similarity=0.287 Sum_probs=42.0
Q ss_pred CCCCCeEEEEccccCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHhC
Q 030031 98 SFSGKRVLELGCGHGLPGIFACLE-G-AAVIHFQEFNAEVLRYLTIPNVIANV 148 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa~~-g-a~~V~~tD~s~~~l~~l~~~Nv~~N~ 148 (184)
..++.+|||+|||+|.+++.+++. + ..+|+++|.+++|++.+. .|+..|.
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~-~n~~~~g 89 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTR-RNAEKFG 89 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHhC
Confidence 457889999999999999988764 2 358999999999999765 8888775
No 49
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.26 E-value=1.5e-06 Score=70.65 Aligned_cols=49 Identities=31% Similarity=0.402 Sum_probs=40.8
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANV 148 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~ 148 (184)
++|+++|||-||||.+|+.++.+||++|+++|.|++.++.+. .|++.-.
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~-~N~~~l~ 89 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIK-KNLEKLG 89 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHH-HHHHHHT
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHH-HHHHHhC
Confidence 789999999999999999999999999999999999998775 8888533
No 50
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.25 E-value=3.3e-06 Score=70.09 Aligned_cols=64 Identities=19% Similarity=0.126 Sum_probs=47.4
Q ss_pred cCCCcccccc---HHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 71 YEGGLKLWEG---SIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 71 ye~G~~~We~---s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
|+.+-..|.. +-.+.+++... ...++.+|||+|||.|.-++.++.+|. +|+++|+|+.+++.+.
T Consensus 7 y~~~~~~w~~~~p~~~l~~~~~~l-----~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~ 73 (213)
T TIGR03840 7 WQEGQIGFHQSEVNPLLVKHWPAL-----GLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFF 73 (213)
T ss_pred HhcCCCCCccCCCCHHHHHHHHhh-----CCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHH
Confidence 3444446642 34555555431 112567999999999999999999998 7999999999999754
No 51
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.25 E-value=1.8e-06 Score=72.48 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=37.4
Q ss_pred CCCCeEEEEccccCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHH
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEG-AAVIHFQEFNAEVLRYLTIPN 143 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~g-a~~V~~tD~s~~~l~~l~~~N 143 (184)
.++.+|||+|||+|.++..++... ..+|+++|+|+.|++.+...|
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~ 73 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERG 73 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcC
Confidence 567899999999999998887762 238999999999999876443
No 52
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.24 E-value=3.4e-06 Score=69.08 Aligned_cols=50 Identities=20% Similarity=0.229 Sum_probs=40.4
Q ss_pred CCCCeEEEEccccCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLE-G-AAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~-g-a~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
.++.+|||+|||+|..+..+++. + ..+|+++|+++++++.+. .|+..+..
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~-~~l~~~~~ 122 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAA-QNIERLGY 122 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH-HHHHHcCC
Confidence 46789999999999999877753 2 348999999999998775 78877643
No 53
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.23 E-value=4.2e-06 Score=68.89 Aligned_cols=42 Identities=19% Similarity=-0.023 Sum_probs=36.2
Q ss_pred CCCCeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhh
Q 030031 99 FSGKRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~ 140 (184)
.++.+|||+|||+|..+..++.. +..+++++|+|++|++.+.
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~ 84 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAK 84 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHH
Confidence 36779999999999999988775 4458999999999999776
No 54
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.22 E-value=3.8e-06 Score=70.58 Aligned_cols=48 Identities=17% Similarity=0.226 Sum_probs=38.7
Q ss_pred CCCCeEEEEccccCHHHHHHHH---cCCCeEEEEeCCHHHHHHhhHHHHHHh
Q 030031 99 FSGKRVLELGCGHGLPGIFACL---EGAAVIHFQEFNAEVLRYLTIPNVIAN 147 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~---~ga~~V~~tD~s~~~l~~l~~~Nv~~N 147 (184)
..+.+|||+|||+|..++.+++ ....+|+++|.|+.|++.++ .|+..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~-~~~~~~ 105 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCR-RHIDAY 105 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHH-HHHHhc
Confidence 3678999999999999987765 23348999999999999876 666553
No 55
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.21 E-value=6.2e-06 Score=67.78 Aligned_cols=51 Identities=18% Similarity=0.094 Sum_probs=41.6
Q ss_pred CCCCCeEEEEccccCHHHHHHHHcCC--CeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 98 SFSGKRVLELGCGHGLPGIFACLEGA--AVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa~~ga--~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
..++.+|||+|||+|..+..+++... .+|+++|+++++++.+. .|+..+..
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~-~~~~~~g~ 127 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAE-RRLRKLGL 127 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHCCC
Confidence 35788999999999999998887643 35999999999998765 78876543
No 56
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.20 E-value=3.5e-06 Score=75.26 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=43.1
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
..+++|||||||+|.+++.++..++ +|+++|+++.+++.+. .|+..|..
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~~-~v~~vE~~~~av~~a~-~N~~~~~~ 280 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPDT-QLTGIEIESEAIACAQ-QSAQMLGL 280 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcCC-eEEEEECCHHHHHHHH-HHHHHcCC
Confidence 4567999999999999999998774 8999999999999776 99988865
No 57
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.20 E-value=7e-06 Score=62.66 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=36.5
Q ss_pred CCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 030031 98 SFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRY 138 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~ 138 (184)
..++++|||+|||+|..+..++..|. +|+++|+++.+++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK 59 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh
Confidence 46788999999999999999999988 89999999999875
No 58
>PRK04148 hypothetical protein; Provisional
Probab=98.20 E-value=5.8e-06 Score=64.48 Aligned_cols=53 Identities=13% Similarity=0.118 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhcCCCCCCCCeEEEEccccCH-HHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 83 DLVKALRLDVQNGNISFSGKRVLELGCGHGL-PGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 83 ~La~~l~~~i~~~~~~~~gkrVLELGcGtGl-~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
++++|+.+.. ...+++++||+|||+|. ++..+++.|. .|+++|++++.++.+.
T Consensus 3 ~i~~~l~~~~----~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~ 56 (134)
T PRK04148 3 TIAEFIAENY----EKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAK 56 (134)
T ss_pred HHHHHHHHhc----ccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence 4677776643 23467899999999997 8888888887 8999999999887664
No 59
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.19 E-value=4.6e-06 Score=74.30 Aligned_cols=59 Identities=27% Similarity=0.388 Sum_probs=49.0
Q ss_pred hhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCCCCC
Q 030031 92 VQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVPKKL 152 (184)
Q Consensus 92 i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~~~ 152 (184)
+..+..+|++|.|||+|||+|+++.++++.||++|.+++-| +|.+.+. .=|..|....+
T Consensus 169 il~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~-~Lv~~N~~~~r 227 (517)
T KOG1500|consen 169 ILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYAR-KLVASNNLADR 227 (517)
T ss_pred HHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHH-HHHhcCCccce
Confidence 34567799999999999999999999999999999999997 6777665 66677755443
No 60
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.19 E-value=4.2e-06 Score=66.25 Aligned_cols=45 Identities=22% Similarity=0.203 Sum_probs=38.5
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHH
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVI 145 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~ 145 (184)
.++.+|||+|||+|.++..+++.+ .+|+++|+++.|++.+. .|+.
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~-~~~~ 56 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLR-EKFA 56 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHH-HHhc
Confidence 456799999999999999998885 48999999999998775 6553
No 61
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.19 E-value=3.5e-06 Score=68.95 Aligned_cols=48 Identities=13% Similarity=-0.038 Sum_probs=39.9
Q ss_pred CCCeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHhC
Q 030031 100 SGKRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLTIPNVIANV 148 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~~~Nv~~N~ 148 (184)
.+.+|||+|||+|..++.+++. ...+|+++|+|++|++.+. .|+..|.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~-~~~~~~~ 88 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKAL-KKIEEEG 88 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHH-HHHHHcC
Confidence 5679999999999999987764 3458999999999999876 7777654
No 62
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.18 E-value=4.4e-06 Score=71.42 Aligned_cols=44 Identities=23% Similarity=0.232 Sum_probs=38.7
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHH
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNV 144 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv 144 (184)
.++.+|||+|||+|.++..++..+. +|+++|++++|++.+. .|+
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~-~~~ 84 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILA-ETF 84 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHH-Hhh
Confidence 4678999999999999999998876 8999999999999875 444
No 63
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.18 E-value=4.8e-06 Score=68.03 Aligned_cols=46 Identities=22% Similarity=0.394 Sum_probs=39.2
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHH
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIA 146 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~ 146 (184)
.++.+|||+|||+|..+..+++.+. +|+++|.++.|++.+. .+...
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~-~~~~~ 107 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEAR-ERAPE 107 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHH-HHHHh
Confidence 4678999999999999999988887 6999999999999776 45443
No 64
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.17 E-value=9.3e-06 Score=66.69 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=38.8
Q ss_pred CCCCeEEEEccccCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHh
Q 030031 99 FSGKRVLELGCGHGLPGIFACLE-G-AAVIHFQEFNAEVLRYLTIPNVIAN 147 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~-g-a~~V~~tD~s~~~l~~l~~~Nv~~N 147 (184)
.++++|||+|||+|..+..++.. + ..+|+++|++++|++.+. .|+..+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~-~~~~~~ 93 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGR-QKVKDA 93 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHhc
Confidence 45789999999999999988764 3 348999999999998765 666543
No 65
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.16 E-value=7.3e-06 Score=68.59 Aligned_cols=42 Identities=24% Similarity=0.241 Sum_probs=35.8
Q ss_pred CCCCeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhh
Q 030031 99 FSGKRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~ 140 (184)
.++.+|||+|||+|.++..++.. +..+|+++|+|+.|++.+.
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~ 72 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEAR 72 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 46789999999999999877764 3458999999999998775
No 66
>PRK05785 hypothetical protein; Provisional
Probab=98.16 E-value=3.5e-06 Score=70.30 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=35.1
Q ss_pred CCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 100 SGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
.+.+|||+|||||..+..+++....+|+++|+|++|++.+.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~ 91 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNL 91 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHH
Confidence 36799999999999998888763248999999999999765
No 67
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.16 E-value=5.2e-06 Score=71.59 Aligned_cols=49 Identities=20% Similarity=0.197 Sum_probs=41.4
Q ss_pred CCCeEEEEccccCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 100 SGKRVLELGCGHGLPGIFACLEG-AAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~g-a~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
++++|||+|||+|.+++.+++.. ..+|+++|+|+.+++.+. .|+..|..
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~-~n~~~~~~ 170 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAE-INIERHGL 170 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCC
Confidence 35789999999999999888753 348999999999999775 89988754
No 68
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.15 E-value=8e-06 Score=73.84 Aligned_cols=50 Identities=16% Similarity=0.048 Sum_probs=43.0
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
.++++|||+|||+|..++.+++.+ .+|+++|++++|++.+. .|+..|...
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~-~n~~~~~~~ 340 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQ-QNAELNGIA 340 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHH-HHHHHhCCC
Confidence 346799999999999999988875 48999999999999776 899887654
No 69
>PRK04266 fibrillarin; Provisional
Probab=98.15 E-value=7.7e-06 Score=68.58 Aligned_cols=70 Identities=20% Similarity=0.184 Sum_probs=48.1
Q ss_pred CccccccHH-HHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHH
Q 030031 74 GLKLWEGSI-DLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLTIPNVI 145 (184)
Q Consensus 74 G~~~We~s~-~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~~~Nv~ 145 (184)
+++.|.... .++..+...+ +.....+|.+|||+|||+|..++.++.. +..+|+++|.+++|++.+. .++.
T Consensus 46 ~~~~~~~~r~~~~~~ll~~~-~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~ 117 (226)
T PRK04266 46 EYREWNPRRSKLAAAILKGL-KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAE 117 (226)
T ss_pred EEEEECCCccchHHHHHhhH-hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhh
Confidence 557787642 3444444322 1122346789999999999999988875 3348999999999998664 4443
No 70
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.15 E-value=1.1e-05 Score=65.68 Aligned_cols=69 Identities=19% Similarity=0.198 Sum_probs=51.4
Q ss_pred cccHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhC
Q 030031 78 WEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANV 148 (184)
Q Consensus 78 We~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~ 148 (184)
|.-......++.+.+.......++.+|||+|||+|..+..+++.+. +++++|.++.+++.+. .|+..+.
T Consensus 23 ~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~-~~~~~~~ 91 (224)
T TIGR01983 23 HKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAK-LHAKKDP 91 (224)
T ss_pred HHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHH-HHHHHcC
Confidence 4444445677776665433345788999999999999998888776 6999999999998765 6665543
No 71
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.14 E-value=5.5e-06 Score=57.53 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=31.3
Q ss_pred EEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhH
Q 030031 105 LELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTI 141 (184)
Q Consensus 105 LELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~ 141 (184)
||+|||+|..+..+++.+..+|+++|+++++++.+.+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~ 37 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARK 37 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHh
Confidence 8999999999999998855689999999999997763
No 72
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.14 E-value=4.9e-06 Score=70.52 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=39.6
Q ss_pred CCeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHhC
Q 030031 101 GKRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLTIPNVIANV 148 (184)
Q Consensus 101 gkrVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~~~Nv~~N~ 148 (184)
+.+|||+|||+|.+++.+++. +..+|+++|+|+.+++.+. .|+..|.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~-~N~~~~~ 134 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCAR-RNLADAG 134 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcC
Confidence 458999999999999987754 3458999999999999765 9998875
No 73
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.13 E-value=7.6e-06 Score=74.52 Aligned_cols=48 Identities=23% Similarity=0.300 Sum_probs=40.5
Q ss_pred CCCeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHhC
Q 030031 100 SGKRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLTIPNVIANV 148 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~~~Nv~~N~ 148 (184)
++.+|||+|||+|.+++.+++. ...+|+++|+|++|++.+. .|+..|.
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~Ar-eNa~~~g 299 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETAR-KNAADLG 299 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcC
Confidence 4569999999999999987753 4568999999999999775 8888764
No 74
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.13 E-value=8.2e-06 Score=67.96 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=36.8
Q ss_pred CCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 100 SGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
++.+|||+|||.|.-++.++.+|. +|+++|+|+.+++.+.
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~ 76 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFF 76 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHH
Confidence 567999999999999999999998 7999999999999764
No 75
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.12 E-value=5.4e-06 Score=73.47 Aligned_cols=49 Identities=20% Similarity=0.352 Sum_probs=41.5
Q ss_pred CCeEEEEccccCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 101 GKRVLELGCGHGLPGIFACLEG-AAVIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 101 gkrVLELGcGtGl~gi~aa~~g-a~~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
..+|||+|||+|.+++.+++.+ ..+|+++|+|+.|++.+. .|+..|...
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~-~nl~~n~l~ 246 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSR-ATLAANGLE 246 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCC
Confidence 3479999999999999888764 348999999999999775 899988654
No 76
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.11 E-value=6.7e-06 Score=70.60 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=40.7
Q ss_pred CeEEEEccccCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 102 KRVLELGCGHGLPGIFACLEG-AAVIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 102 krVLELGcGtGl~gi~aa~~g-a~~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
++|||+|||+|.+++.++... ..+|+++|+|+++++.+. .|+..|...
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~-~n~~~~~~~ 164 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAE-ENAEKNQLE 164 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCCC
Confidence 689999999999999888754 258999999999999776 898877543
No 77
>PLN02244 tocopherol O-methyltransferase
Probab=98.09 E-value=8.4e-06 Score=71.85 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=39.2
Q ss_pred CCCCeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHh
Q 030031 99 FSGKRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLTIPNVIAN 147 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~~~Nv~~N 147 (184)
.++++|||+|||+|..+..+++. ++ +|+++|+|+.|++.+. .++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~-~v~gvD~s~~~i~~a~-~~~~~~ 164 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGA-NVKGITLSPVQAARAN-ALAAAQ 164 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCC-EEEEEECCHHHHHHHH-HHHHhc
Confidence 46789999999999999988875 55 8999999999998775 555544
No 78
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.08 E-value=1.5e-05 Score=65.75 Aligned_cols=50 Identities=20% Similarity=0.159 Sum_probs=40.8
Q ss_pred CCCCCeEEEEccccCHHHHHHHHc-CC-CeEEEEeCCHHHHHHhhHHHHHHhC
Q 030031 98 SFSGKRVLELGCGHGLPGIFACLE-GA-AVIHFQEFNAEVLRYLTIPNVIANV 148 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa~~-ga-~~V~~tD~s~~~l~~l~~~Nv~~N~ 148 (184)
..++.+|||+|||+|..+..+++. +. .+|+++|+++++++.+. .|+..+.
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~-~~l~~~g 125 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAK-KTLKKLG 125 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH-HHHHHcC
Confidence 356889999999999999877765 32 48999999999999775 7877654
No 79
>PLN02672 methionine S-methyltransferase
Probab=98.08 E-value=5.2e-06 Score=82.96 Aligned_cols=68 Identities=22% Similarity=0.260 Sum_probs=50.4
Q ss_pred ccHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 79 EGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 79 e~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
+.+..+++.+... ....+++++|||+|||+|.+++.+++. ...+|+++|+|+++++.+. .|+..|...
T Consensus 100 peTE~lve~L~~~---~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~-~Na~~n~l~ 168 (1082)
T PLN02672 100 DWSFTFYEGLNRH---PDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAW-INLYLNALD 168 (1082)
T ss_pred hhHHHHHHHHHhc---ccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCcc
Confidence 3344555554321 122357889999999999999988875 3468999999999999775 999998643
No 80
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.07 E-value=2.6e-05 Score=63.67 Aligned_cols=47 Identities=19% Similarity=0.120 Sum_probs=39.7
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHh
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIAN 147 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N 147 (184)
.++.+|||+|||+|..+..+++.+. +|+++|.++++++.+. .|+..+
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~a~-~~~~~~ 123 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWEAK-RRLKQL 123 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHHHH-HHHHHC
Confidence 4678999999999999988777754 8999999999998775 777654
No 81
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.07 E-value=9.7e-06 Score=68.94 Aligned_cols=42 Identities=29% Similarity=0.428 Sum_probs=35.5
Q ss_pred CCCCeEEEEccccCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhh
Q 030031 99 FSGKRVLELGCGHGLPGIFACLE-G-AAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~-g-a~~V~~tD~s~~~l~~l~ 140 (184)
.++.+|||+|||||..+..+++. + ..+|+++|+|++|++.+.
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~ 115 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAA 115 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 46789999999999999887764 3 248999999999999775
No 82
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.06 E-value=1.4e-05 Score=65.91 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=40.2
Q ss_pred CCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHh
Q 030031 98 SFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIAN 147 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N 147 (184)
..++++|||+|||+|..+..+++.++ +|+++|.++.+++.+. .|+..+
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~-~~~~~~ 93 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVAR-LHALES 93 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHH-HHHHHc
Confidence 45788999999999999998888876 7999999999998665 555443
No 83
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.06 E-value=1.9e-05 Score=73.37 Aligned_cols=49 Identities=22% Similarity=0.211 Sum_probs=40.5
Q ss_pred CCCeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 100 SGKRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
++.+|||+|||+|.+++.+++. ...+|+++|+|+.+++.+. .|+..|..
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~-~N~~~~~l 187 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAK-SNAIKYEV 187 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHH-HHHHHcCC
Confidence 3568999999999999977653 4458999999999999775 88887653
No 84
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.04 E-value=1.8e-05 Score=69.38 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=45.2
Q ss_pred ccccHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 77 LWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 77 ~We~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
-|.+.+...+..-+ ..+++||+|||+|||.|..+..++..||+.|+|+|.++.-..+..
T Consensus 97 EWrSd~KW~rl~p~-----l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~ 155 (315)
T PF08003_consen 97 EWRSDWKWDRLLPH-----LPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFE 155 (315)
T ss_pred cccccchHHHHHhh-----hCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHH
Confidence 45555544333222 236899999999999999999999999999999999877665544
No 85
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.04 E-value=1.8e-05 Score=70.30 Aligned_cols=48 Identities=21% Similarity=0.159 Sum_probs=41.4
Q ss_pred CCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 101 GKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 101 gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
+++|||||||+|.+++.+++.. .+|+++|.+++|++.+. .|+..|...
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~-~n~~~~~~~ 245 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQ-YNIAANNID 245 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHH-HHHHHcCCC
Confidence 4579999999999999877764 58999999999999776 999998654
No 86
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.04 E-value=1.1e-05 Score=66.97 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=38.0
Q ss_pred CCCCeEEEEccccCHHHHHHHHc---CCCeEEEEeCCHHHHHHhhHHHHHH
Q 030031 99 FSGKRVLELGCGHGLPGIFACLE---GAAVIHFQEFNAEVLRYLTIPNVIA 146 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~---ga~~V~~tD~s~~~l~~l~~~Nv~~ 146 (184)
..+.+|||+|||+|..++.+++. ...+|+++|+|++|++.+. .++..
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~-~~~~~ 101 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCR-QHIAA 101 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHH-HHHHh
Confidence 36679999999999999888764 2348999999999999776 55543
No 87
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.04 E-value=2.4e-05 Score=64.59 Aligned_cols=66 Identities=23% Similarity=0.181 Sum_probs=48.6
Q ss_pred cccHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 78 WEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 78 We~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
++.+..+.+.+.+.+ ..++++|||+|||+|.+++.++.. ...+|+++|+++.+++.+. .|+..+..
T Consensus 70 ~~~~~~l~~~~l~~~-----~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~-~~~~~~~~ 136 (251)
T TIGR03534 70 RPDTEELVEAALERL-----KKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVAR-KNAARLGL 136 (251)
T ss_pred CCChHHHHHHHHHhc-----ccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHcCC
Confidence 344555555555533 124569999999999999988875 3458999999999999775 78876544
No 88
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.03 E-value=1.4e-05 Score=67.88 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=40.2
Q ss_pred CCCeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHh
Q 030031 100 SGKRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLTIPNVIAN 147 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~~~Nv~~N 147 (184)
+|.+|||+|||||-.++.+++. |..+|+++|+|+.||+.....-...+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~ 99 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKG 99 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccC
Confidence 7999999999999999988764 55689999999999998875544433
No 89
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.03 E-value=1.2e-05 Score=69.88 Aligned_cols=47 Identities=26% Similarity=0.310 Sum_probs=39.9
Q ss_pred CCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhH
Q 030031 95 GNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTI 141 (184)
Q Consensus 95 ~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~ 141 (184)
....-.|++|||+|||-|.+++++|+.-..+|+++++|+++.+.+..
T Consensus 67 kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~ 113 (283)
T COG2230 67 KLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEK 113 (283)
T ss_pred hcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHH
Confidence 44556899999999999999999998733389999999999987763
No 90
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.03 E-value=1.2e-05 Score=68.14 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=39.3
Q ss_pred CCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHH
Q 030031 98 SFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVI 145 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~ 145 (184)
..++++|||+|||+|.+++.+++.+. +|+++|+++.|++.+. .|+.
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~-~~~~ 72 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLR-DDEI 72 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHH-HHhc
Confidence 34678999999999999999998865 8999999999998776 5543
No 91
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.02 E-value=1.2e-05 Score=70.15 Aligned_cols=47 Identities=19% Similarity=0.202 Sum_probs=40.3
Q ss_pred CeEEEEccccCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 102 KRVLELGCGHGLPGIFACLEG-AAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 102 krVLELGcGtGl~gi~aa~~g-a~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
++|||+|||+|.+++.+++.. ..+|+++|+|+.+++.+. .|+..|..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~-~n~~~~~l 182 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAE-INIERHGL 182 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHhCC
Confidence 689999999999999888753 458999999999999775 89887754
No 92
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.01 E-value=1.1e-05 Score=58.24 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=31.0
Q ss_pred EEEEccccCHHHHHHHHcC----CCeEEEEeCCHHHHHHhhHHHHH
Q 030031 104 VLELGCGHGLPGIFACLEG----AAVIHFQEFNAEVLRYLTIPNVI 145 (184)
Q Consensus 104 VLELGcGtGl~gi~aa~~g----a~~V~~tD~s~~~l~~l~~~Nv~ 145 (184)
|||+|||+|.....+.... ..+++++|+|++|++.+. .+..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~-~~~~ 45 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAK-KRFS 45 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHH-HHSH
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHH-Hhch
Confidence 7999999999999888753 258999999999999776 4443
No 93
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.99 E-value=2e-06 Score=72.97 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=35.4
Q ss_pred CCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHH
Q 030031 101 GKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPN 143 (184)
Q Consensus 101 gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~N 143 (184)
-+++||||||||+.|..+-.+ +.+.+++|+|.+|++.+..+-
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg 167 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKG 167 (287)
T ss_pred cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhcc
Confidence 479999999999999887766 458999999999999775433
No 94
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.99 E-value=3.2e-05 Score=68.91 Aligned_cols=48 Identities=21% Similarity=0.159 Sum_probs=41.3
Q ss_pred CCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 101 GKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 101 gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
+.+|||++||+|.+++.+++. +++|+++|.++.+++.+. .|+..|...
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~-~N~~~~~~~ 254 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQ-YNIAANGID 254 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHH-HHHHHhCCC
Confidence 357999999999999977765 568999999999999775 999998654
No 95
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.98 E-value=2.5e-05 Score=65.69 Aligned_cols=46 Identities=26% Similarity=0.275 Sum_probs=39.2
Q ss_pred CCCCeEEEEccccCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHH
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEG-AAVIHFQEFNAEVLRYLTIPNVI 145 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~g-a~~V~~tD~s~~~l~~l~~~Nv~ 145 (184)
.++.+|||+|||+|.+++.++... ..+|+++|+++.+++.+. .|+.
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~-~n~~ 153 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVAR-RNAK 153 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHH
Confidence 456799999999999999888754 458999999999999775 7777
No 96
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=97.98 E-value=1.9e-05 Score=66.71 Aligned_cols=49 Identities=24% Similarity=0.332 Sum_probs=39.2
Q ss_pred CCCCeEEEEccccCHHHHHHHHc-CC-CeEEEEeCCHHHHHHhhHHHHHHhC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLE-GA-AVIHFQEFNAEVLRYLTIPNVIANV 148 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~-ga-~~V~~tD~s~~~l~~l~~~Nv~~N~ 148 (184)
.++++|||+|||+|..++.+++. +. .+|+++|++++|++.+. .|...+.
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~-~~~~~~g 126 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKAR-ANARKAG 126 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHH-HHHHHcC
Confidence 46889999999999998866653 43 37999999999999876 6766543
No 97
>PRK06202 hypothetical protein; Provisional
Probab=97.98 E-value=6.7e-06 Score=68.05 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=34.1
Q ss_pred CCCCeEEEEccccCHHHHHHHHc----C-CCeEEEEeCCHHHHHHhh
Q 030031 99 FSGKRVLELGCGHGLPGIFACLE----G-AAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~----g-a~~V~~tD~s~~~l~~l~ 140 (184)
.++.+|||+|||+|.++..+++. | ..+|+++|++++|++.+.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~ 105 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFAR 105 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHH
Confidence 35679999999999998877642 3 238999999999998775
No 98
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.97 E-value=2.7e-05 Score=69.94 Aligned_cols=45 Identities=27% Similarity=0.382 Sum_probs=37.9
Q ss_pred CCCCCeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHH
Q 030031 98 SFSGKRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLTIPNV 144 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~~~Nv 144 (184)
..++.+|||+|||+|.+++.+++. |. +|+++|+|++|++.+. .++
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~-~~~ 210 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQ-ERC 210 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHH-HHh
Confidence 346789999999999999988875 55 8999999999999775 544
No 99
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.96 E-value=2.1e-05 Score=64.48 Aligned_cols=48 Identities=35% Similarity=0.476 Sum_probs=44.1
Q ss_pred CCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHH
Q 030031 98 SFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIA 146 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~ 146 (184)
.+.|+++|||-+|+|.+|+.|+.+||++++++|.|..++..+. .|++.
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~-~N~~~ 88 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILK-ENLKA 88 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHH-HHHHH
Confidence 3789999999999999999999999999999999999998775 88764
No 100
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=97.95 E-value=1.8e-05 Score=66.66 Aligned_cols=44 Identities=20% Similarity=0.263 Sum_probs=32.2
Q ss_pred CCCCeEEEEccccCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHH
Q 030031 99 FSGKRVLELGCGHGLPGIFACLE-G-AAVIHFQEFNAEVLRYLTIP 142 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~-g-a~~V~~tD~s~~~l~~l~~~ 142 (184)
.+|.+|||+|||||.++..+++. + ..+|+++|+|++||+.+...
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k 91 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKK 91 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHH
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHH
Confidence 56789999999999999988764 3 24899999999999987633
No 101
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=97.95 E-value=1.3e-05 Score=68.46 Aligned_cols=75 Identities=31% Similarity=0.340 Sum_probs=53.3
Q ss_pred CccccccHHHHHHHHHHHhhc-----CCCCCC--CCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHH
Q 030031 74 GLKLWEGSIDLVKALRLDVQN-----GNISFS--GKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIA 146 (184)
Q Consensus 74 G~~~We~s~~La~~l~~~i~~-----~~~~~~--gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~ 146 (184)
.+.+|.++..++.++.....+ +...++ .++|||||+|||++|+.+++....+|+.+|...-+ +.+. .|...
T Consensus 53 ~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~-~~L~-~~~~~ 130 (248)
T KOG2793|consen 53 SAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVV-ENLK-FNRDK 130 (248)
T ss_pred eeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchhhH-HHHH-Hhhhh
Confidence 677999999999998876542 122233 55799999999999999988544589999997543 3343 45444
Q ss_pred hCCC
Q 030031 147 NVPK 150 (184)
Q Consensus 147 N~~~ 150 (184)
|...
T Consensus 131 ~~~~ 134 (248)
T KOG2793|consen 131 NNIA 134 (248)
T ss_pred hhhh
Confidence 4443
No 102
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.94 E-value=3.4e-05 Score=67.53 Aligned_cols=62 Identities=24% Similarity=0.119 Sum_probs=47.6
Q ss_pred HHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 83 DLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 83 ~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
.++..+.+.. ...++++|||.|||||.+.+.++..++ +|+++|+++.|++.+. .|+..+...
T Consensus 169 ~la~~~~~l~----~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~-~nl~~~g~~ 230 (329)
T TIGR01177 169 KLARAMVNLA----RVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGAR-INLEHYGIE 230 (329)
T ss_pred HHHHHHHHHh----CCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHH-HHHHHhCCC
Confidence 4555555432 134578999999999999999888876 7999999999998765 788765443
No 103
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.92 E-value=4.4e-05 Score=66.28 Aligned_cols=73 Identities=12% Similarity=0.048 Sum_probs=52.8
Q ss_pred ccccHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHhCCCCC
Q 030031 77 LWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACL-EGAAVIHFQEFNAEVLRYLTIPNVIANVPKKL 152 (184)
Q Consensus 77 ~We~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~~~ 152 (184)
-||. ..+.+++.+... +...+++..+||+|||+|.+++.++. .+...|+++|.|+.++.++ ..|+.++.....
T Consensus 127 RpET-EE~V~~Vid~~~-~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La-~eN~qr~~l~g~ 200 (328)
T KOG2904|consen 127 RPET-EEWVEAVIDALN-NSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLA-KENAQRLKLSGR 200 (328)
T ss_pred CccH-HHHHHHHHHHHh-hhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHH-HHHHHHHhhcCc
Confidence 4553 344555555432 23346677999999999999997664 5667899999999999865 599998876654
No 104
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.91 E-value=1.5e-05 Score=64.35 Aligned_cols=43 Identities=26% Similarity=0.224 Sum_probs=35.3
Q ss_pred CCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHH
Q 030031 100 SGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIP 142 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~ 142 (184)
.+++|||+|||+|..+..++......++++|++++|++.+...
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~ 55 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR 55 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc
Confidence 5679999999999999877765444789999999999876543
No 105
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.89 E-value=2.3e-05 Score=67.96 Aligned_cols=46 Identities=20% Similarity=0.166 Sum_probs=37.2
Q ss_pred CCCeEEEEccccCHHHHHHHHcC--CCeEEEEeCCHHHHHHhhHHHHHH
Q 030031 100 SGKRVLELGCGHGLPGIFACLEG--AAVIHFQEFNAEVLRYLTIPNVIA 146 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~g--a~~V~~tD~s~~~l~~l~~~Nv~~ 146 (184)
++.+|||||||||..+..++... ..+|+++|+|++||+.+. .++..
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~-~~l~~ 110 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESA-AALAA 110 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHH-HHHHh
Confidence 56799999999999998777653 247999999999998776 55443
No 106
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.89 E-value=3.6e-05 Score=66.98 Aligned_cols=48 Identities=17% Similarity=0.075 Sum_probs=40.6
Q ss_pred CCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHh
Q 030031 98 SFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIAN 147 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N 147 (184)
..++.+|||+|||+|.++..++..+. +|+++|+++.|++.+. .|+..+
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~-~~~~~~ 81 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELK-KRFQNS 81 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHH-HHHHhc
Confidence 34678999999999999998888765 7999999999999876 666543
No 107
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.89 E-value=3.7e-05 Score=62.39 Aligned_cols=42 Identities=24% Similarity=0.262 Sum_probs=35.4
Q ss_pred CCCCeEEEEccccCHHHHHHHHcC-CCeEEEEeCCHHHHHHhh
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEG-AAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~g-a~~V~~tD~s~~~l~~l~ 140 (184)
.++++|||+|||+|..+..++..+ ..+|+++|.++++++.+.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~ 75 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAK 75 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHH
Confidence 456899999999999999888765 346899999999998665
No 108
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=97.88 E-value=3.3e-05 Score=62.61 Aligned_cols=47 Identities=17% Similarity=0.099 Sum_probs=38.0
Q ss_pred CCCeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHh
Q 030031 100 SGKRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLTIPNVIAN 147 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~~~Nv~~N 147 (184)
...++||+|||+|..++.+++. ....|+++|++++|++.+. .|+..+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~-~~~~~~ 63 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAAN-NKANKL 63 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHH-HHHHHh
Confidence 4568999999999999877764 3458999999999998775 666554
No 109
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.88 E-value=5.7e-05 Score=57.34 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=40.5
Q ss_pred eEEEEccccCHHHHHHHHcCCC-eEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 103 RVLELGCGHGLPGIFACLEGAA-VIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 103 rVLELGcGtGl~gi~aa~~ga~-~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
.+||+|||+|..++.+++.+.. +|+++|.++.+.+.+. .|+..|...
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~-~~~~~n~~~ 48 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILE-ENVKLNNLP 48 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHH-HHHHHcCCC
Confidence 4899999999999988887653 7999999999999876 999988653
No 110
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.88 E-value=6.1e-05 Score=61.75 Aligned_cols=76 Identities=20% Similarity=0.171 Sum_probs=54.0
Q ss_pred CCCCCCCeEEEEccccCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHhCCCCCC----CCccccccccc-cceeE
Q 030031 96 NISFSGKRVLELGCGHGLPGIFACLEG-AAVIHFQEFNAEVLRYLTIPNVIANVPKKLQ----PAATIETNCQS-GAEVR 169 (184)
Q Consensus 96 ~~~~~gkrVLELGcGtGl~gi~aa~~g-a~~V~~tD~s~~~l~~l~~~Nv~~N~~~~~~----~~~~~~~~~~~-~~~~~ 169 (184)
....+|.+++|+|||||-+++.+++.+ ..+|+++|.++++++.+. .|.++....+.. ..+... .++ .++.-
T Consensus 30 L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~-~N~~~fg~~n~~vv~g~Ap~~L--~~~~~~dai 106 (187)
T COG2242 30 LRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIE-RNAARFGVDNLEVVEGDAPEAL--PDLPSPDAI 106 (187)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHH-HHHHHhCCCcEEEEeccchHhh--cCCCCCCEE
Confidence 335678899999999999999888643 458999999999999665 999887755431 111111 123 35666
Q ss_pred EEecC
Q 030031 170 FLLVT 174 (184)
Q Consensus 170 f~~~~ 174 (184)
|..+.
T Consensus 107 FIGGg 111 (187)
T COG2242 107 FIGGG 111 (187)
T ss_pred EECCC
Confidence 76665
No 111
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.86 E-value=4.9e-05 Score=64.07 Aligned_cols=44 Identities=20% Similarity=0.208 Sum_probs=38.1
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHH
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNV 144 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv 144 (184)
.++.+|||+|||+|.++..++..+. +|+++|.++.+++.+. .+.
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~-~~~ 71 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILR-KLL 71 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHH-HHh
Confidence 4678999999999999999998876 6999999999998765 444
No 112
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.86 E-value=5.6e-05 Score=66.64 Aligned_cols=50 Identities=22% Similarity=0.216 Sum_probs=40.5
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCC--CeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGA--AVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga--~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
.++++|||+|||+|..++.+++... .+|+++|.+++|++.+. .|+..+..
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar-~~l~~~g~ 130 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAK-RNVRRLGI 130 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHH-HHHHHcCC
Confidence 4678999999999999998876532 36999999999998665 88876543
No 113
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.85 E-value=5.9e-05 Score=64.96 Aligned_cols=46 Identities=28% Similarity=0.416 Sum_probs=34.2
Q ss_pred cCCCCCCCCeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhh
Q 030031 94 NGNISFSGKRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 94 ~~~~~~~gkrVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~ 140 (184)
+......|.+|||+|||.|-+++.+++. |+ +|+++.+|++..+.+.
T Consensus 56 ~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~ 102 (273)
T PF02353_consen 56 EKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYAR 102 (273)
T ss_dssp TTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHH
T ss_pred HHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHH
Confidence 3444567899999999999999999887 77 8999999999998776
No 114
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=97.83 E-value=4.6e-05 Score=64.82 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=35.2
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
.++.+|||+|||+|..+..++.....+|+++|+++.|++.+.
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~ 92 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAK 92 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHH
Confidence 467899999999999998776542338999999999998776
No 115
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.83 E-value=4.4e-05 Score=62.95 Aligned_cols=63 Identities=21% Similarity=0.249 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCC-eEEEEeCCHHHHHHhhHHHHH
Q 030031 81 SIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAA-VIHFQEFNAEVLRYLTIPNVI 145 (184)
Q Consensus 81 s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~-~V~~tD~s~~~l~~l~~~Nv~ 145 (184)
-..+.+|+.+.+......-...||||||||.|.+-..+++.|.. +.+++|||+++++++ .|+.
T Consensus 48 e~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA--~niA 111 (227)
T KOG1271|consen 48 EERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELA--QNIA 111 (227)
T ss_pred HHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHH--HHHH
Confidence 35678888876642222223339999999999999999988764 489999999999974 4444
No 116
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=97.83 E-value=4.4e-05 Score=62.15 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=38.6
Q ss_pred CCCeEEEEccccCHHHHHHHHcC--CCeEEEEeCCHHHHHHhhHHHHHH
Q 030031 100 SGKRVLELGCGHGLPGIFACLEG--AAVIHFQEFNAEVLRYLTIPNVIA 146 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~g--a~~V~~tD~s~~~l~~l~~~Nv~~ 146 (184)
++.+|||+|||+|..+..++..+ ..+|+++|+++.+++.+. .|+..
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~-~~~~~ 98 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGR-EKLRD 98 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH-Hhhcc
Confidence 57899999999999999888766 368999999999998776 55543
No 117
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.83 E-value=5.3e-05 Score=61.91 Aligned_cols=44 Identities=27% Similarity=0.272 Sum_probs=36.2
Q ss_pred CeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHH
Q 030031 102 KRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLTIPNVIA 146 (184)
Q Consensus 102 krVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~~~Nv~~ 146 (184)
++|||+|||+|..+..+++. +..+|+++|+|+++++.+. .++..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~-~~~~~ 45 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGR-ERIRA 45 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHh
Confidence 57999999999999887765 3458999999999998776 66654
No 118
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.82 E-value=4.5e-05 Score=64.49 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=38.7
Q ss_pred CCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHH
Q 030031 100 SGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVI 145 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~ 145 (184)
+..-|||+|||||+-|..+...|. .++++|+|+.||+.+...-++
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e 94 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE 94 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh
Confidence 456799999999999999988896 899999999999987754454
No 119
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.82 E-value=5.4e-05 Score=63.56 Aligned_cols=51 Identities=16% Similarity=0.117 Sum_probs=41.7
Q ss_pred CCCCeEEEEccccCHHHHHHHH--cCCCeEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACL--EGAAVIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~--~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
.+.++|||+|||+|.-++.++. .+..+|+++|+++++++.+. .|+..|...
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~-~n~~~~gl~ 119 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGL-EFIKKAGVD 119 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCC
Confidence 4678999999999997775554 34568999999999998665 999988765
No 120
>PHA03411 putative methyltransferase; Provisional
Probab=97.80 E-value=4e-05 Score=66.40 Aligned_cols=40 Identities=25% Similarity=0.215 Sum_probs=34.1
Q ss_pred CCeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhh
Q 030031 101 GKRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 101 gkrVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~ 140 (184)
+.+|||+|||+|.+++.+++. +..+|+++|+++.|++.+.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar 105 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGK 105 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 468999999999999887764 2458999999999999775
No 121
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.78 E-value=5.7e-05 Score=68.01 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=42.7
Q ss_pred CCeEEEEccccCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 101 GKRVLELGCGHGLPGIFACL-EGAAVIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 101 gkrVLELGcGtGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
+.+|||++||+|..|+.+++ .++.+|+++|+++++++.+. .|++.|...
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~-~N~~~N~~~ 107 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIK-KNLELNGLE 107 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHhCCC
Confidence 46899999999999998776 46668999999999999776 999999754
No 122
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.77 E-value=9.3e-05 Score=67.14 Aligned_cols=50 Identities=18% Similarity=0.098 Sum_probs=42.4
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCC-CeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGA-AVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga-~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
.+|.+|||+|||+|..++.++..+. .+|+++|.++.+++.+. .|+..+..
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~-~n~~~~g~ 293 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVR-ENLQRLGL 293 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHH-HHHHHcCC
Confidence 5788999999999999998877543 48999999999999775 88887654
No 123
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.76 E-value=5e-05 Score=69.25 Aligned_cols=45 Identities=16% Similarity=0.349 Sum_probs=36.8
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHH
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNV 144 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv 144 (184)
-++.+|||+|||+|..++.+++....+|+++|+|++|++.+. .|.
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~-~~~ 309 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFAL-ERA 309 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHH-HHh
Confidence 357899999999999998887653348999999999998765 454
No 124
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.76 E-value=9.4e-05 Score=66.94 Aligned_cols=56 Identities=25% Similarity=0.219 Sum_probs=50.7
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCCCCCCCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVPKKLQPA 155 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~~~~~~ 155 (184)
.+||+||++-|=||..|+.|++.||++|+.+|+|...|+.+. .|.+.|.....++.
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~-~N~~LNg~~~~~~~ 271 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWAR-ENAELNGLDGDRHR 271 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHH-HHHHhcCCCcccee
Confidence 469999999999999999999999999999999999999776 99999998765543
No 125
>PRK08317 hypothetical protein; Provisional
Probab=97.76 E-value=0.00014 Score=58.77 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=35.8
Q ss_pred CCCCCeEEEEccccCHHHHHHHHcC--CCeEEEEeCCHHHHHHhh
Q 030031 98 SFSGKRVLELGCGHGLPGIFACLEG--AAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa~~g--a~~V~~tD~s~~~l~~l~ 140 (184)
..++.+|||+|||+|..+..++... ..+|+++|.++.+++.+.
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~ 61 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAK 61 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Confidence 3467899999999999998777642 458999999999998765
No 126
>PHA03412 putative methyltransferase; Provisional
Probab=97.74 E-value=3.8e-05 Score=65.24 Aligned_cols=44 Identities=18% Similarity=0.091 Sum_probs=36.6
Q ss_pred CCCeEEEEccccCHHHHHHHHc----CCCeEEEEeCCHHHHHHhhHHHH
Q 030031 100 SGKRVLELGCGHGLPGIFACLE----GAAVIHFQEFNAEVLRYLTIPNV 144 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~----ga~~V~~tD~s~~~l~~l~~~Nv 144 (184)
.+.+|||+|||+|.+++.+++. ...+|+++|+++.+++.+. .|+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar-~n~ 96 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGK-RIV 96 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHH-hhc
Confidence 4679999999999999988763 3448999999999999776 554
No 127
>PTZ00146 fibrillarin; Provisional
Probab=97.72 E-value=0.00018 Score=62.87 Aligned_cols=65 Identities=28% Similarity=0.274 Sum_probs=46.1
Q ss_pred ccccccHH-HHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhh
Q 030031 75 LKLWEGSI-DLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLE-G-AAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 75 ~~~We~s~-~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~-g-a~~V~~tD~s~~~l~~l~ 140 (184)
++.|+.-. .|+..+..-+.. ....++.+|||||||+|..+..++.. + ..+|+++|++++|++.+.
T Consensus 107 yR~w~p~rSKlaa~i~~g~~~-l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl 174 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVAN-IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLT 174 (293)
T ss_pred eeeeCCcccHHHHHHHCCcce-eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHH
Confidence 78998853 455555443221 22357789999999999999988875 2 347999999998765443
No 128
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.72 E-value=6.9e-05 Score=68.31 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=35.2
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHh
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
.++++|||+|||+|..+..+++.+. +|+++|++++|++..
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a 75 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKN 75 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHH
Confidence 4677999999999999999988764 899999999999754
No 129
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.71 E-value=7.8e-05 Score=61.65 Aligned_cols=53 Identities=21% Similarity=0.241 Sum_probs=41.0
Q ss_pred CCCCCeEEEEccccCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHhCCCC
Q 030031 98 SFSGKRVLELGCGHGLPGIFACL-EGAAVIHFQEFNAEVLRYLTIPNVIANVPKK 151 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~~ 151 (184)
..+|.+|+|+.||.|..++.+++ ..++.|++.|+||.+++.+. .|++.|....
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~-~Ni~lNkv~~ 152 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLK-ENIRLNKVEN 152 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHH-HHHHHTT-TT
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHH-HHHHHcCCCC
Confidence 35688999999999999999988 33458999999999999886 9999997664
No 130
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=97.70 E-value=0.00018 Score=63.92 Aligned_cols=41 Identities=15% Similarity=0.218 Sum_probs=34.7
Q ss_pred CCCeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhh
Q 030031 100 SGKRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~ 140 (184)
.+.+|||+|||+|..++.+++. +..+|+++|.+++|++.+.
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~ 154 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAK 154 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 5679999999999999877653 4458999999999998775
No 131
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.69 E-value=0.0001 Score=65.50 Aligned_cols=49 Identities=20% Similarity=0.151 Sum_probs=40.2
Q ss_pred CeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCCCCC
Q 030031 102 KRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVPKKL 152 (184)
Q Consensus 102 krVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~~~ 152 (184)
.+||||-||+|.+|+.++.... +|+|+|.++++++.+. .|+..|...+.
T Consensus 198 ~~vlDlycG~G~fsl~la~~~~-~V~gvE~~~~av~~A~-~Na~~N~i~n~ 246 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKAK-KVIGVEIVEEAVEDAR-ENAKLNGIDNV 246 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCSS-EEEEEES-HHHHHHHH-HHHHHTT--SE
T ss_pred CcEEEEeecCCHHHHHHHhhCC-eEEEeeCCHHHHHHHH-HHHHHcCCCcc
Confidence 3799999999999999998865 8999999999999876 99999987653
No 132
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.00016 Score=59.52 Aligned_cols=73 Identities=25% Similarity=0.293 Sum_probs=52.9
Q ss_pred ccccHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHhCCCC
Q 030031 77 LWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLE--GAAVIHFQEFNAEVLRYLTIPNVIANVPKK 151 (184)
Q Consensus 77 ~We~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~--ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~~ 151 (184)
.-|.++.|.+.|.+.... ......+-++|+|||+|.++-++++. +.....++|+|+.+++ +++...+.|...-
T Consensus 21 PaEDTFlLlDaLekd~~e-L~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~-~Tl~TA~~n~~~~ 95 (209)
T KOG3191|consen 21 PAEDTFLLLDALEKDAAE-LKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALE-ATLETARCNRVHI 95 (209)
T ss_pred ccchhhHHHHHHHHHHHH-HhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHH-HHHHHHHhcCCcc
Confidence 446677777777764322 11122567999999999999988874 3446789999999998 5568888887663
No 133
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.68 E-value=0.00014 Score=61.80 Aligned_cols=41 Identities=15% Similarity=0.284 Sum_probs=33.5
Q ss_pred CCCeEEEEccccCHHHHHHHHcC----CCeEEEEeCCHHHHHHhh
Q 030031 100 SGKRVLELGCGHGLPGIFACLEG----AAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~g----a~~V~~tD~s~~~l~~l~ 140 (184)
++.+|||+|||+|.++..++... ..+|+++|+|++|++.+.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~ 129 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAA 129 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHH
Confidence 45789999999999998776542 136999999999998775
No 134
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.00012 Score=66.90 Aligned_cols=53 Identities=28% Similarity=0.320 Sum_probs=46.8
Q ss_pred CCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCCCCC
Q 030031 98 SFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVPKKL 152 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~~~ 152 (184)
..++++||||=||.|..|+.+++... +|+++|+++++++.+. .|++.|...+.
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~~~-~V~gvEi~~~aV~~A~-~NA~~n~i~N~ 343 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKRVK-KVHGVEISPEAVEAAQ-ENAAANGIDNV 343 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhcccCC-EEEEEecCHHHHHHHH-HHHHHcCCCcE
Confidence 34668999999999999999997754 8999999999999776 99999999864
No 135
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.64 E-value=0.0001 Score=59.22 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=31.7
Q ss_pred CCCCCCeEEEEccccCHHHHHHHHc--CCCeEEEEeCCHHH
Q 030031 97 ISFSGKRVLELGCGHGLPGIFACLE--GAAVIHFQEFNAEV 135 (184)
Q Consensus 97 ~~~~gkrVLELGcGtGl~gi~aa~~--ga~~V~~tD~s~~~ 135 (184)
...+|++|||+|||+|.++..++.. +..+|+++|+++.+
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~ 69 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK 69 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc
Confidence 3467899999999999999877664 34479999999865
No 136
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.64 E-value=5.8e-06 Score=59.24 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=27.6
Q ss_pred EEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhh
Q 030031 105 LELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 105 LELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~ 140 (184)
||+|||+|..+..++.. ...+++++|+|+.|++.+.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~ 37 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERAR 37 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTC
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 79999999999876655 3448999999999996554
No 137
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.63 E-value=0.00013 Score=63.40 Aligned_cols=53 Identities=25% Similarity=0.137 Sum_probs=45.7
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCCCCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVPKKL 152 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~~~ 152 (184)
.+|++||++-|=||-.|+.+++.||.+|+.+|.|..+++.+. .|...|.....
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~-~N~~lNg~~~~ 174 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAK-ENAALNGLDLD 174 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHH-HHHHHTT-CCT
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCcc
Confidence 578999999999999999999999999999999999999776 99999986543
No 138
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.63 E-value=0.00016 Score=64.95 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=43.5
Q ss_pred CCeEEEEccccCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 101 GKRVLELGCGHGLPGIFACLE--GAAVIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 101 gkrVLELGcGtGl~gi~aa~~--ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
+.+|||+.||+|..|+.+++. |+++|++.|+|+++++.+. .|++.|...
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~-~N~~~N~~~ 95 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIK-NNVEYNSVE 95 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH-HHHHHhCCC
Confidence 358999999999999998886 7889999999999999775 999999654
No 139
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.63 E-value=0.00018 Score=65.59 Aligned_cols=50 Identities=18% Similarity=0.098 Sum_probs=40.8
Q ss_pred CCCCeEEEEccccCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLE--GAAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~--ga~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
.+|++|||+|||+|..++.++.. +..+|+++|.++++++.+. .|+..+..
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~-~~~~~~g~ 300 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIR-SHASALGI 300 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-HHHHHhCC
Confidence 57889999999999999876653 2348999999999999775 88877554
No 140
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.62 E-value=0.00025 Score=60.36 Aligned_cols=51 Identities=18% Similarity=0.092 Sum_probs=42.0
Q ss_pred CCCCeEEEEccccCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLE-G-AAVIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~-g-a~~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
.+|.+|||+|||+|..++.++.. + ...|+++|.++.+++.+. .|+.++...
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~-~n~~~~g~~ 122 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLI-ANINRCGVL 122 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHH-HHHHHcCCC
Confidence 46789999999999999877653 2 248999999999999775 999887643
No 141
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.61 E-value=0.00016 Score=61.79 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=31.5
Q ss_pred CCCeEEEEccccCH----HHHHHHHcC------CCeEEEEeCCHHHHHHhh
Q 030031 100 SGKRVLELGCGHGL----PGIFACLEG------AAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 100 ~gkrVLELGcGtGl----~gi~aa~~g------a~~V~~tD~s~~~l~~l~ 140 (184)
++.+|||+|||||- +++.++..+ ..+|+++|+|+.||+.+.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar 149 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKAR 149 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHH
Confidence 45699999999995 455554432 247999999999999776
No 142
>PHA01634 hypothetical protein
Probab=97.59 E-value=0.00014 Score=56.87 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=47.9
Q ss_pred CCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 95 GNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 95 ~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
+.+++++|+|+|+|++.|--+|+.+..||++|++.+.++...+... .|+..|..
T Consensus 23 ~~idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~e-en~k~nnI 76 (156)
T PHA01634 23 GMLNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWE-EVCAYFNI 76 (156)
T ss_pred hheeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHH-HHhhhhee
Confidence 3567899999999999999999999999999999999998887665 79988743
No 143
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.59 E-value=0.0002 Score=65.21 Aligned_cols=51 Identities=12% Similarity=0.047 Sum_probs=42.3
Q ss_pred CCCCeEEEEccccCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLE--GAAVIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~--ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
.++.+|||+|||+|..++.++.. +..+|+++|+++++++.+. .|+..+...
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~-~n~~~~g~~ 301 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIE-ENAKRLGLT 301 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCC
Confidence 46789999999999999987764 2458999999999999775 888876543
No 144
>PRK06922 hypothetical protein; Provisional
Probab=97.58 E-value=0.00017 Score=69.05 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=37.2
Q ss_pred CCCCeEEEEccccCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHH
Q 030031 99 FSGKRVLELGCGHGLPGIFACL-EGAAVIHFQEFNAEVLRYLTIPNVI 145 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~~~Nv~ 145 (184)
.++.+|||+|||+|..+..++. ....+|+++|+|+.|++.+. .+..
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ar-arl~ 463 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLK-KKKQ 463 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHhh
Confidence 4688999999999999876665 33458999999999999876 4443
No 145
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.55 E-value=0.00019 Score=57.74 Aligned_cols=44 Identities=23% Similarity=0.406 Sum_probs=36.9
Q ss_pred CCCeEEEEccccCHHHHHHHHcCC--CeEEEEeCCHHHHHHhhHHHH
Q 030031 100 SGKRVLELGCGHGLPGIFACLEGA--AVIHFQEFNAEVLRYLTIPNV 144 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~ga--~~V~~tD~s~~~l~~l~~~Nv 144 (184)
++++|||+|||+|..+..+++.+. .+++++|.++.+++.+. .|.
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~-~~~ 84 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAK-KKS 84 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHH-HHh
Confidence 788999999999999988877655 38999999999998765 444
No 146
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=4.5e-05 Score=61.80 Aligned_cols=71 Identities=25% Similarity=0.429 Sum_probs=57.7
Q ss_pred CCCccccccHHHHHHHHHHHhhcCCCCCCCCeEEEEccc-cCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHh
Q 030031 72 EGGLKLWEGSIDLVKALRLDVQNGNISFSGKRVLELGCG-HGLPGIFACL-EGAAVIHFQEFNAEVLRYLTIPNVIAN 147 (184)
Q Consensus 72 e~G~~~We~s~~La~~l~~~i~~~~~~~~gkrVLELGcG-tGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~~~Nv~~N 147 (184)
+|-..+|++...|+.++.+. +..++|++|||||.| ||+-|++.|. ...+.|..||-|.+.++.+. .-+.+|
T Consensus 5 tgnvciwpseeala~~~l~~----~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~-ki~~~n 77 (201)
T KOG3201|consen 5 TGNVCIWPSEEALAWTILRD----PNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVE-KIRNSN 77 (201)
T ss_pred CCcEEecccHHHHHHHHHhc----hhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHH-HHHhcc
Confidence 45567999999999998873 456889999999999 8999987665 45678999999999988775 445556
No 147
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.51 E-value=0.00021 Score=48.74 Aligned_cols=38 Identities=26% Similarity=0.398 Sum_probs=32.9
Q ss_pred eEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 103 RVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 103 rVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
+++|+|||+|..+..+++....+++++|.++++++.+.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 38 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELAR 38 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHH
Confidence 58999999999998888755679999999999988665
No 148
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.49 E-value=0.00043 Score=63.64 Aligned_cols=63 Identities=32% Similarity=0.322 Sum_probs=42.1
Q ss_pred HHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcC-----CCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 86 KALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEG-----AAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 86 ~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~g-----a~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
+.+.+.........+++.|+|+|||+|.++.++++.+ +.+|++++.|+.++..+. .-|..|.-
T Consensus 172 ~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~-~~v~~n~w 239 (448)
T PF05185_consen 172 EALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQ-KRVNANGW 239 (448)
T ss_dssp HHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHH-HHHHHTTT
T ss_pred HHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHH-HHHHhcCC
Confidence 3444433333333367899999999999999888775 679999999998875443 33355544
No 149
>PRK00811 spermidine synthase; Provisional
Probab=97.48 E-value=0.00021 Score=61.62 Aligned_cols=45 Identities=22% Similarity=0.187 Sum_probs=38.4
Q ss_pred CCCeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHH
Q 030031 100 SGKRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLTIPNVI 145 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~~~Nv~ 145 (184)
+.++||++|||+|..+..+++. +..+|+++|++++|++.+. .+..
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~-~~~~ 121 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCR-KYLP 121 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHH-HHhH
Confidence 5689999999999999988876 6679999999999999776 4443
No 150
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=97.44 E-value=0.00024 Score=58.62 Aligned_cols=36 Identities=17% Similarity=0.114 Sum_probs=29.9
Q ss_pred CCCCCeEEEEccccCHHHHHHHHcC--CCeEEEEeCCH
Q 030031 98 SFSGKRVLELGCGHGLPGIFACLEG--AAVIHFQEFNA 133 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa~~g--a~~V~~tD~s~ 133 (184)
..++.+|||||||||..+..+++.. ..+|+++|+++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~ 86 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP 86 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence 3568899999999999998877753 24899999986
No 151
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.42 E-value=0.00028 Score=62.81 Aligned_cols=54 Identities=22% Similarity=0.268 Sum_probs=49.5
Q ss_pred CCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCCCCC
Q 030031 98 SFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVPKKL 152 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~~~ 152 (184)
...|.+|+|+-||.|..++.+|+.|+..|+++|+||.+++.+. .|+.+|-....
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~-eNi~LN~v~~~ 239 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLK-ENIRLNKVEGR 239 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHH-HHHHhcCccce
Confidence 3569999999999999999999999877999999999999886 99999998875
No 152
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.42 E-value=0.00086 Score=51.76 Aligned_cols=60 Identities=12% Similarity=0.035 Sum_probs=42.2
Q ss_pred HHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHH-----cCCCeEEEEeCCHHHHHHhhHHH
Q 030031 84 LVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACL-----EGAAVIHFQEFNAEVLRYLTIPN 143 (184)
Q Consensus 84 La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~-----~ga~~V~~tD~s~~~l~~l~~~N 143 (184)
+++++...........+..+|+|+|||.|.++..++. ....+|+++|.++..++.+...+
T Consensus 9 ~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~ 73 (141)
T PF13679_consen 9 MAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRA 73 (141)
T ss_pred HHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHH
Confidence 3444444332212234567999999999999998887 43458999999999988765433
No 153
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.41 E-value=0.00052 Score=62.24 Aligned_cols=50 Identities=10% Similarity=-0.030 Sum_probs=42.0
Q ss_pred CCCCeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
.+|.+|||+|||+|..++.++.. +..+|+++|.++++++.+. .|+.++..
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~-~n~~r~g~ 287 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVY-ENLKRLGL 287 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HHHHHcCC
Confidence 46789999999999999887764 4458999999999999775 89987654
No 154
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.41 E-value=0.00053 Score=59.12 Aligned_cols=49 Identities=10% Similarity=0.026 Sum_probs=38.5
Q ss_pred CCCCeEEEEccccCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEG-AAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~g-a~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
-++.+|||+|||+|.+++.+++.. ..+++++|. +.+++.+. .|+.....
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~gl 197 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVN-ENAAEKGV 197 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHH-HHHHhCCc
Confidence 345799999999999999888763 347999998 68998665 77776543
No 155
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.41 E-value=0.00028 Score=59.39 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=37.6
Q ss_pred CCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhH
Q 030031 100 SGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTI 141 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~ 141 (184)
++.|||..|||.|.-.+.++..|. +|+++|+|+.+++.+..
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~ 83 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFS 83 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHH
Confidence 578999999999999999999999 69999999999998753
No 156
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.41 E-value=0.00038 Score=62.98 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=40.2
Q ss_pred CCCCeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
..+..+||+|||+|...+.+|+. ....++|+|+++.|++.+. .++..+..
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~-~ka~~~gL 171 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVL-KQIELLNL 171 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHH-HHHHHcCC
Confidence 34579999999999999988775 3457999999999999876 66666543
No 157
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.40 E-value=0.00045 Score=57.35 Aligned_cols=52 Identities=23% Similarity=0.240 Sum_probs=39.3
Q ss_pred CCCCCeEEEEccccCHHHHHHHHc-CC-CeEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 98 SFSGKRVLELGCGHGLPGIFACLE-GA-AVIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa~~-ga-~~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
.-+|.+|||+|||||+.+-.++.. |. .+|+++|.++...+.+. .|+......
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~-~~l~~~~~~ 123 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERAR-RNLARLGID 123 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHH-HHHHHHTTH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHH-HHHHHhccC
Confidence 457889999999999999877765 43 26999999999998775 888875443
No 158
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.35 E-value=0.00076 Score=61.34 Aligned_cols=51 Identities=18% Similarity=0.048 Sum_probs=42.5
Q ss_pred CCCCeEEEEccccCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLE--GAAVIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~--ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
.+|.+|||+|||+|..++.++.. +..+|+++|.++++++.+. .|+.++...
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~-~n~~r~g~~ 303 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQ-ENAQRLGLK 303 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHH-HHHHHcCCC
Confidence 46889999999999999877764 2348999999999999776 899887654
No 159
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00086 Score=55.96 Aligned_cols=50 Identities=22% Similarity=0.119 Sum_probs=42.3
Q ss_pred CCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 98 SFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
.-++.+|||+|||+|+.+-.+++... +|+.+|..++..+.++ .|+.....
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~-~~L~~lg~ 119 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQAR-RNLETLGY 119 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHH-HHHHHcCC
Confidence 46789999999999999999998865 8999999998888765 77776554
No 160
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.28 E-value=0.00033 Score=59.17 Aligned_cols=41 Identities=27% Similarity=0.327 Sum_probs=34.9
Q ss_pred CCCeEEEEccccCHHHHHHHH-cCCCeEEEEeCCHHHHHHhh
Q 030031 100 SGKRVLELGCGHGLPGIFACL-EGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~ 140 (184)
.-.+|.|||||+|.-+..+++ ...++|+|+|-|++||+.+.
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa 71 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAA 71 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHH
Confidence 456899999999999987665 56669999999999999775
No 161
>PRK04457 spermidine synthase; Provisional
Probab=97.28 E-value=0.00052 Score=58.57 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=36.9
Q ss_pred CCCeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHH
Q 030031 100 SGKRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLTIPNVI 145 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~~~Nv~ 145 (184)
++++|||+|||+|.++..+++. ...+|+++|+++++++.+. .+..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~-~~f~ 111 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVAR-NHFE 111 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHH-HHcC
Confidence 5689999999999999877654 4558999999999999765 5544
No 162
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.26 E-value=0.0012 Score=60.25 Aligned_cols=50 Identities=14% Similarity=0.029 Sum_probs=41.2
Q ss_pred CCCCeEEEEccccCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLE--GAAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~--ga~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
.+|.+|||+|||+|..++.++.. +..+|+++|+++++++.+. .|+.+...
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~-~n~~r~g~ 287 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVE-KHAKRLKL 287 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHH-HHHHHcCC
Confidence 56889999999999999877764 2358999999999999776 88887543
No 163
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.0003 Score=65.40 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=52.3
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCCCCC
Q 030031 85 VKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVPKKL 152 (184)
Q Consensus 85 a~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~~~ 152 (184)
|.-+.+.+.+....-.++.++|+-||||..|+.+++. +++|++++++++.++.+. .|...|...+.
T Consensus 368 aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~-~nA~~NgisNa 433 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAE-KNAQINGISNA 433 (534)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhh-hcchhcCccce
Confidence 4444444444444456689999999999999998875 668999999999999886 99999988775
No 164
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.24 E-value=0.00043 Score=59.34 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=41.1
Q ss_pred CCCCCCeEEEEccccCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHH
Q 030031 97 ISFSGKRVLELGCGHGLPGIFACL-EGAAVIHFQEFNAEVLRYLTIPNVI 145 (184)
Q Consensus 97 ~~~~gkrVLELGcGtGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~~~Nv~ 145 (184)
..++++.+||+||-+|.+++..++ .|...|+|+|+++..|+.+. .|++
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ar-k~~r 103 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRAR-KEIR 103 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHH-Hhcc
Confidence 358899999999999999998776 68889999999999988776 5544
No 165
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.21 E-value=0.00066 Score=55.99 Aligned_cols=42 Identities=26% Similarity=0.253 Sum_probs=33.5
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
-.|.||||||||.|.+...+......+..|+|++++.+..+.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv 53 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACV 53 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHH
Confidence 468899999999999887777643447999999988765443
No 166
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.14 E-value=0.00067 Score=56.63 Aligned_cols=61 Identities=23% Similarity=0.340 Sum_probs=44.9
Q ss_pred Ccccccc---HHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 74 GLKLWEG---SIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 74 G~~~We~---s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
|-..|+. +-.|.+++.+. ..-.+.+||.-|||.|.=.+.++..|. +|+|+|+|+.+++.+.
T Consensus 13 ~~~~w~~~~~~p~L~~~~~~l-----~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~ 76 (218)
T PF05724_consen 13 GQTPWDQGEPNPALVEYLDSL-----ALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAF 76 (218)
T ss_dssp T--TT--TTSTHHHHHHHHHH-----TTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHhc-----CCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHH
Confidence 4445665 35677777762 123567999999999999999999998 8999999999998874
No 167
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.0016 Score=55.97 Aligned_cols=42 Identities=24% Similarity=0.206 Sum_probs=37.4
Q ss_pred CCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 98 SFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
..++.+|||+|+|.|.++..+++.++ +|+++++++.+++.+.
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~ 69 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLK 69 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHH
Confidence 34478999999999999999999987 7999999999998775
No 168
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.06 E-value=0.0011 Score=56.49 Aligned_cols=44 Identities=16% Similarity=0.124 Sum_probs=36.7
Q ss_pred CCCeEEEEccccCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHH
Q 030031 100 SGKRVLELGCGHGLPGIFACLEG-AAVIHFQEFNAEVLRYLTIPNV 144 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~g-a~~V~~tD~s~~~l~~l~~~Nv 144 (184)
+.++||++|||+|..+..+++.. ..+|+++|+++++++.+. .+.
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~-~~~ 116 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSK-KFL 116 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHH-HHh
Confidence 45699999999999888777664 678999999999998775 544
No 169
>PLN02476 O-methyltransferase
Probab=97.02 E-value=0.0022 Score=55.58 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=42.4
Q ss_pred CCCCeEEEEccccCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLE-G-AAVIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~-g-a~~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
.+.++|||+|+++|..++.+++. + ..+|+.+|.+++.++.+. .|++.+...
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar-~n~~~aGl~ 169 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAK-RYYELAGVS 169 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCC
Confidence 46789999999999999988763 2 337999999999998665 999987665
No 170
>PRK03612 spermidine synthase; Provisional
Probab=97.02 E-value=0.0012 Score=61.56 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=36.6
Q ss_pred CCCeEEEEccccCHHHHHHHHcCC-CeEEEEeCCHHHHHHhh
Q 030031 100 SGKRVLELGCGHGLPGIFACLEGA-AVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~ga-~~V~~tD~s~~~l~~l~ 140 (184)
+.++|||+|||+|.....+++.+. ++|+++|+|++|++.++
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar 338 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELAR 338 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHH
Confidence 568999999999999988888754 79999999999999876
No 171
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.0026 Score=54.11 Aligned_cols=55 Identities=25% Similarity=0.265 Sum_probs=45.9
Q ss_pred ccHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHH
Q 030031 79 EGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLR 137 (184)
Q Consensus 79 e~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~ 137 (184)
.+++.|...+.+ -.++++|+++||+|+.||-.+.++..+||++|+++|.....+.
T Consensus 62 RG~~KL~~ale~----F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~ 116 (245)
T COG1189 62 RGGLKLEKALEE----FELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLH 116 (245)
T ss_pred cHHHHHHHHHHh----cCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccC
Confidence 445666777665 3678999999999999999999999999999999999865543
No 172
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.99 E-value=0.0031 Score=55.25 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHhhcCCCCC-CCCeEEEEccccC-HHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHh
Q 030031 80 GSIDLVKALRLDVQNGNISF-SGKRVLELGCGHG-LPGIFACL-EGAAVIHFQEFNAEVLRYLTIPNVIAN 147 (184)
Q Consensus 80 ~s~~La~~l~~~i~~~~~~~-~gkrVLELGcGtG-l~gi~aa~-~ga~~V~~tD~s~~~l~~l~~~Nv~~N 147 (184)
...+...|+.+.+....... ...++||+|||.- ++.+..++ .|. +++|||+++..++.+. .||..|
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~-~nv~~N 149 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESAR-ENVERN 149 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHH-HHHHHT
T ss_pred hhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHH-HHHHhc
Confidence 34556666766554332222 2568999999965 54554444 566 8999999999999876 999999
No 173
>PLN03075 nicotianamine synthase; Provisional
Probab=96.95 E-value=0.0037 Score=54.69 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=34.4
Q ss_pred CCCeEEEEccc-cCHHHHHHHH--cCCCeEEEEeCCHHHHHHhhHHHHH
Q 030031 100 SGKRVLELGCG-HGLPGIFACL--EGAAVIHFQEFNAEVLRYLTIPNVI 145 (184)
Q Consensus 100 ~gkrVLELGcG-tGl~gi~aa~--~ga~~V~~tD~s~~~l~~l~~~Nv~ 145 (184)
.+++|+|+||| .|+.++.++. ....+++++|.++++++.++ .++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar-~~~~ 170 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVAR-RLVS 170 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH-HHhh
Confidence 78999999999 5565665542 34458999999999999765 6664
No 174
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=96.95 E-value=0.002 Score=55.63 Aligned_cols=51 Identities=14% Similarity=0.052 Sum_probs=39.7
Q ss_pred CCCCCCCeEEEEccccCHHHHHHHHc-CC------CeEEEEeCCHHHHHHhhHHHHHH
Q 030031 96 NISFSGKRVLELGCGHGLPGIFACLE-GA------AVIHFQEFNAEVLRYLTIPNVIA 146 (184)
Q Consensus 96 ~~~~~gkrVLELGcGtGl~gi~aa~~-ga------~~V~~tD~s~~~l~~l~~~Nv~~ 146 (184)
....++.++||++||||-++....+. +. ++|+..|+|++||....+.-.+.
T Consensus 96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~ 153 (296)
T KOG1540|consen 96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKR 153 (296)
T ss_pred cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhc
Confidence 34567899999999999999766543 23 68999999999999777554443
No 175
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=96.94 E-value=0.0012 Score=54.68 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=31.3
Q ss_pred CeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 102 KRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 102 krVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
.++||+|||.|.++..++.+.. +++++|.++.+++.+.
T Consensus 45 ~~alEvGCs~G~lT~~LA~rCd-~LlavDis~~Al~~Ar 82 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRCD-RLLAVDISPRALARAR 82 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGEE-EEEEEES-HHHHHHHH
T ss_pred ceeEecCCCccHHHHHHHHhhC-ceEEEeCCHHHHHHHH
Confidence 5899999999999999988764 8999999999998775
No 176
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=96.94 E-value=0.0025 Score=52.74 Aligned_cols=51 Identities=22% Similarity=0.173 Sum_probs=40.8
Q ss_pred CCCCeEEEEccccCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLE-G-AAVIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~-g-a~~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
.+.++|||+||++|+-++.++.. + ..+|+.+|.+++..+.+. +|++.....
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~-~~~~~ag~~ 96 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIAR-ENFRKAGLD 96 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHH-HHHHHTTGG
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHH-HHHHhcCCC
Confidence 46789999999999999988863 1 348999999999998665 888875543
No 177
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=96.89 E-value=0.00081 Score=57.40 Aligned_cols=37 Identities=11% Similarity=0.137 Sum_probs=32.6
Q ss_pred eEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 103 RVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 103 rVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
.++|+|||+|...+.++.. .++|+++|.|++||+.+.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~ 72 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAK 72 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhh
Confidence 7999999999888888877 458999999999999775
No 178
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.88 E-value=0.0023 Score=51.49 Aligned_cols=45 Identities=20% Similarity=0.095 Sum_probs=36.6
Q ss_pred CeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhC
Q 030031 102 KRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANV 148 (184)
Q Consensus 102 krVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~ 148 (184)
+.|+|+.||.|--++.+|+.+. +|+++|+++..++++. .|++.=.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~~a~-hNa~vYG 45 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLECAK-HNAEVYG 45 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHH-HHHHHTT
T ss_pred CEEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHHHHH-HHHHHcC
Confidence 3699999999999999999865 8999999999999775 8887643
No 179
>PRK01581 speE spermidine synthase; Validated
Probab=96.79 E-value=0.0021 Score=57.88 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=35.7
Q ss_pred CCCCeEEEEccccCHHHHHHHHcC-CCeEEEEeCCHHHHHHhh
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEG-AAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~g-a~~V~~tD~s~~~l~~l~ 140 (184)
.+.++||++|||+|.....+.+.. ..+|+++|++++|++.++
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr 191 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMAR 191 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHH
Confidence 456799999999999887777764 568999999999999776
No 180
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=96.77 E-value=0.0013 Score=54.69 Aligned_cols=49 Identities=18% Similarity=0.198 Sum_probs=40.8
Q ss_pred CCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCCCC
Q 030031 101 GKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVPKK 151 (184)
Q Consensus 101 gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~~ 151 (184)
...+-|||+|+|++++++++. |.+|++++.+|...+++. .|+..|...+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~-eN~~v~g~~n 81 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAE-ENLHVPGDVN 81 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhh-hcCCCCCCcc
Confidence 357899999999999999988 789999999999988775 7776555443
No 181
>PLN02366 spermidine synthase
Probab=96.61 E-value=0.0046 Score=54.22 Aligned_cols=41 Identities=22% Similarity=0.172 Sum_probs=35.8
Q ss_pred CCCeEEEEccccCHHHHHHHHcC-CCeEEEEeCCHHHHHHhh
Q 030031 100 SGKRVLELGCGHGLPGIFACLEG-AAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~g-a~~V~~tD~s~~~l~~l~ 140 (184)
+.++||++|||.|.....+++.. ..+|+.+|+++++++.++
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar 132 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSK 132 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHH
Confidence 47899999999999998888763 568999999999999776
No 182
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.60 E-value=0.0036 Score=53.13 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 82 IDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 82 ~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
..+++.+.+.+. ..++..|||+|+|+|.++..++..+ ++|+++|.++.+.+.+.
T Consensus 16 ~~~~~~Iv~~~~----~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~ 69 (262)
T PF00398_consen 16 PNIADKIVDALD----LSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLK 69 (262)
T ss_dssp HHHHHHHHHHHT----CGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHhcC----CCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHH
Confidence 344555555431 2378899999999999999999888 58999999999988776
No 183
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.52 E-value=0.0043 Score=55.00 Aligned_cols=42 Identities=19% Similarity=0.072 Sum_probs=30.9
Q ss_pred CCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhH
Q 030031 100 SGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTI 141 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~ 141 (184)
.+.+|||||||-|-=-.--...+...++|+|++.+.|+.+..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~ 103 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARE 103 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHH
Confidence 778999999998765555555677899999999999988763
No 184
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.48 E-value=0.0088 Score=52.11 Aligned_cols=44 Identities=20% Similarity=0.144 Sum_probs=38.4
Q ss_pred CCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 96 NISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 96 ~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
.....+..|||+|-|||.++..+...|+ +|+++++++.|+..++
T Consensus 54 a~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~ 97 (315)
T KOG0820|consen 54 ADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELE 97 (315)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHH
Confidence 3345677899999999999999998887 7999999999998776
No 185
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.42 E-value=0.0098 Score=51.12 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=43.6
Q ss_pred cccHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHc--CCCeEEEEeCCHHHHHHhh
Q 030031 78 WEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLE--GAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 78 We~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~--ga~~V~~tD~s~~~l~~l~ 140 (184)
.++.+.....+.+++......|+.++|||+|||.|.....+... ...+++++|.|+.|++...
T Consensus 11 ~p~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~ 75 (274)
T PF09243_consen 11 MPATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAK 75 (274)
T ss_pred hhHHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHH
Confidence 34444444555555555555788999999999998655444321 3568999999999998543
No 186
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.32 E-value=0.027 Score=45.97 Aligned_cols=50 Identities=24% Similarity=0.390 Sum_probs=36.1
Q ss_pred CCCeEEEEccccCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 100 SGKRVLELGCGHGLPGIFACL-EGAAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
.+++++|+|+|.|+||+.++. +...+|+.+|-...-+..+..--...++.
T Consensus 48 ~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~ 98 (184)
T PF02527_consen 48 FGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS 98 (184)
T ss_dssp CCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S
T ss_pred CCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC
Confidence 344899999999999997765 44568999999987776665443444544
No 187
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.25 E-value=0.0079 Score=53.71 Aligned_cols=58 Identities=26% Similarity=0.171 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHH
Q 030031 83 DLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIA 146 (184)
Q Consensus 83 ~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~ 146 (184)
.+|+.+.+. ....+|..|||=-||||-+.+.+...|+ +++|+|++..|++-+. .|++.
T Consensus 184 ~lAR~mVNL----a~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak-~Nl~~ 241 (347)
T COG1041 184 RLARAMVNL----ARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAK-INLEY 241 (347)
T ss_pred HHHHHHHHH----hccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhh-hhhhh
Confidence 577777764 2356889999999999999999999998 7999999999999765 77775
No 188
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=96.13 E-value=0.03 Score=47.04 Aligned_cols=52 Identities=19% Similarity=0.213 Sum_probs=41.5
Q ss_pred CCCCeEEEEccccCHHHHHHHH-cC-CCeEEEEeCCHHHHHHhhHHHHHHhCCCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACL-EG-AAVIHFQEFNAEVLRYLTIPNVIANVPKK 151 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~-~g-a~~V~~tD~s~~~l~~l~~~Nv~~N~~~~ 151 (184)
...|+|||+|.++|+-++.++. .. ..+++.+|.++++.+.+. .|+..=....
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~-~n~~~ag~~~ 111 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIAR-ENLAEAGVDD 111 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHH-HHHHHcCCcc
Confidence 3789999999999999997665 33 458999999999998765 7777654444
No 189
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=96.09 E-value=0.017 Score=49.63 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=41.8
Q ss_pred CCCCCCeEEEEccccCHHHHHHHH--cCCCeEEEEeCCHHHHHHhhHHHHHH
Q 030031 97 ISFSGKRVLELGCGHGLPGIFACL--EGAAVIHFQEFNAEVLRYLTIPNVIA 146 (184)
Q Consensus 97 ~~~~gkrVLELGcGtGl~gi~aa~--~ga~~V~~tD~s~~~l~~l~~~Nv~~ 146 (184)
-...|++|||.|.|+|.++.+++. ....+|+..|+.++.++.+. .|++.
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~-~Nl~~ 141 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTAR-ENLSE 141 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHH-HHHHH
Confidence 357899999999999999998885 23358999999999999775 99987
No 190
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.05 E-value=0.0094 Score=53.35 Aligned_cols=36 Identities=17% Similarity=0.129 Sum_probs=32.5
Q ss_pred CCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCH
Q 030031 97 ISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNA 133 (184)
Q Consensus 97 ~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~ 133 (184)
...+|+++|||||++|-.+-.+.+.|+ +|+++|..+
T Consensus 208 ~~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~ 243 (357)
T PRK11760 208 RLAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP 243 (357)
T ss_pred ccCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh
Confidence 346899999999999999999999998 899999764
No 191
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.05 E-value=0.02 Score=47.49 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=38.9
Q ss_pred EEEEccccCHHHHHHHHcCC-CeEEEEeCCHHHHHHhhHHHHHHhCCCC
Q 030031 104 VLELGCGHGLPGIFACLEGA-AVIHFQEFNAEVLRYLTIPNVIANVPKK 151 (184)
Q Consensus 104 VLELGcGtGl~gi~aa~~ga-~~V~~tD~s~~~l~~l~~~Nv~~N~~~~ 151 (184)
|.|+||-+|++++++.+.|. .+|+++|+++.-++.+. .|+..+....
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~-~~i~~~~l~~ 48 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAK-ENIAKYGLED 48 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHH-HHHHHTT-TT
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCcc
Confidence 68999999999999999875 57999999999999876 8998866443
No 192
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.04 E-value=0.016 Score=50.64 Aligned_cols=42 Identities=5% Similarity=-0.141 Sum_probs=35.9
Q ss_pred CCCCeEEEEccccCHHHHHHHHcC--CCeEEEEeCCHHHHHHhh
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEG--AAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~g--a~~V~~tD~s~~~l~~l~ 140 (184)
..+..+||.+||.|--+..+++.. ..+|+++|.+++|++.+.
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak 61 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAK 61 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHH
Confidence 456799999999999999888763 358999999999998765
No 193
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.04 E-value=0.021 Score=49.30 Aligned_cols=45 Identities=18% Similarity=0.113 Sum_probs=38.1
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHH
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNV 144 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv 144 (184)
.+.+++||||+|.|-++..++..-. +|++|+.|+.|...+.+.+.
T Consensus 93 ~~~~~lLDlGAGdG~VT~~l~~~f~-~v~aTE~S~~Mr~rL~~kg~ 137 (265)
T PF05219_consen 93 WKDKSLLDLGAGDGEVTERLAPLFK-EVYATEASPPMRWRLSKKGF 137 (265)
T ss_pred ccCCceEEecCCCcHHHHHHHhhcc-eEEeecCCHHHHHHHHhCCC
Confidence 4567999999999999998888754 79999999999887775544
No 194
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=95.99 E-value=0.03 Score=47.79 Aligned_cols=53 Identities=21% Similarity=0.108 Sum_probs=40.2
Q ss_pred CCCCCCeEEEEccccCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 97 ISFSGKRVLELGCGHGLPGIFACLE--GAAVIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 97 ~~~~gkrVLELGcGtGl~gi~aa~~--ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
....|++|||-|.|+|.++.++++. ...+|+..|+.++.++.+. .|++.+...
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~-~n~~~~gl~ 91 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKAR-KNFERHGLD 91 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHH-HHHHHTTCC
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHH-HHHHHcCCC
Confidence 3568999999999999999988863 2348999999999999776 999987663
No 195
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=95.87 E-value=0.009 Score=51.14 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=36.4
Q ss_pred eEEEEccccCHHHHHHHHcCC---CeEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 103 RVLELGCGHGLPGIFACLEGA---AVIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 103 rVLELGcGtGl~gi~aa~~ga---~~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
+|||+|||.|-...-+.+-.. -.|++.|+++.+++.+. .|...|-..
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk-~~~~~~e~~ 123 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVK-KSSGYDESR 123 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHH-hccccchhh
Confidence 699999999988876665432 37999999999999775 666665544
No 196
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=95.85 E-value=0.01 Score=49.99 Aligned_cols=44 Identities=20% Similarity=0.264 Sum_probs=33.6
Q ss_pred eEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHh
Q 030031 103 RVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIAN 147 (184)
Q Consensus 103 rVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N 147 (184)
.|||+|||||..--+.-.....+||++|.|+.|-+.+. ..+..|
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~-ks~~E~ 122 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIAD-KSAAEK 122 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHH-HHHhhc
Confidence 57999999998765544333458999999999988665 666666
No 197
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.81 E-value=0.033 Score=46.70 Aligned_cols=51 Identities=24% Similarity=0.353 Sum_probs=37.8
Q ss_pred CCeEEEEccccCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHhCCCC
Q 030031 101 GKRVLELGCGHGLPGIFACL-EGAAVIHFQEFNAEVLRYLTIPNVIANVPKK 151 (184)
Q Consensus 101 gkrVLELGcGtGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~~ 151 (184)
+++++|+|+|.|+||+.++. ....+|+.+|-...-+..+..--.+.|+.+.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv 119 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENV 119 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCe
Confidence 78999999999999998774 4445799999987776666544444555533
No 198
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.78 E-value=0.012 Score=54.35 Aligned_cols=45 Identities=24% Similarity=0.286 Sum_probs=37.6
Q ss_pred eEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhC
Q 030031 103 RVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANV 148 (184)
Q Consensus 103 rVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~ 148 (184)
.|||+|+|||++++++++.||..|++.+.=.-|..++. .=+..|.
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~ar-kI~~kng 113 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLAR-KIMHKNG 113 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHH-HHHhcCC
Confidence 69999999999999999999999999999888888664 3344343
No 199
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=95.72 E-value=0.018 Score=45.64 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=30.2
Q ss_pred CCCeEEEEccccCHHHHHHHHcC--CCeEEEEeCCHH
Q 030031 100 SGKRVLELGCGHGLPGIFACLEG--AAVIHFQEFNAE 134 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~g--a~~V~~tD~s~~ 134 (184)
++.+||||||+.|-.+.++..++ +.+|+++|+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 45899999999999999999987 569999999865
No 200
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=95.56 E-value=0.01 Score=52.27 Aligned_cols=76 Identities=21% Similarity=0.250 Sum_probs=56.3
Q ss_pred cccccHHHHHHHHH--HHhhcCCCCCCCCeEEEEccccCHHHH-HHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCCCCC
Q 030031 76 KLWEGSIDLVKALR--LDVQNGNISFSGKRVLELGCGHGLPGI-FACLEGAAVIHFQEFNAEVLRYLTIPNVIANVPKKL 152 (184)
Q Consensus 76 ~~We~s~~La~~l~--~~i~~~~~~~~gkrVLELGcGtGl~gi-~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~~~ 152 (184)
..|+...-+..+=. +..+-....-.+..|.||-+|.|+.++ ++..+||+.|++.|.||..++.+. .|++.|....+
T Consensus 168 ~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLr-R~~~~N~V~~r 246 (351)
T KOG1227|consen 168 QIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALR-RNAEANNVMDR 246 (351)
T ss_pred EEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHH-HHHHhcchHHH
Confidence 47777654433211 111112334456789999999999999 899999999999999999999776 99999976654
No 201
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=95.40 E-value=0.06 Score=44.04 Aligned_cols=43 Identities=19% Similarity=0.114 Sum_probs=33.0
Q ss_pred eEEEEccccCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHH
Q 030031 103 RVLELGCGHGLPGIFACL-EGAAVIHFQEFNAEVLRYLTIPNVIA 146 (184)
Q Consensus 103 rVLELGcGtGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~~~Nv~~ 146 (184)
.+||+|||.|-..+..|+ .....++|+|+....+..+. ..+..
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~-~~~~~ 63 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKAL-RKAEK 63 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHH-HHHHH
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHH-HHHHh
Confidence 799999999999987665 45568999999999998776 44444
No 202
>PRK10742 putative methyltransferase; Provisional
Probab=95.35 E-value=0.048 Score=46.75 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=38.1
Q ss_pred eEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHH
Q 030031 103 RVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIA 146 (184)
Q Consensus 103 rVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~ 146 (184)
+|||+-+|+|..++.++.+|+. |+++|.++.+...+. .|+.+
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~-dgL~r 132 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLD-DGLAR 132 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHH-HHHHH
Confidence 8999999999999999999995 999999998887665 88876
No 203
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=95.27 E-value=0.084 Score=43.18 Aligned_cols=58 Identities=24% Similarity=0.240 Sum_probs=45.1
Q ss_pred ccHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCC--CeEEEEeCCHHHHHHhh
Q 030031 79 EGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGA--AVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 79 e~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga--~~V~~tD~s~~~l~~l~ 140 (184)
+.|-.+|+.|.+.+ ..-+|+-|||+|.|||.++-....+|. ..++++++|++-...+.
T Consensus 31 PsSs~lA~~M~s~I----~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~ 90 (194)
T COG3963 31 PSSSILARKMASVI----DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLN 90 (194)
T ss_pred CCcHHHHHHHHhcc----CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHH
Confidence 55556677777643 234688999999999999988887764 47899999999887665
No 204
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=95.25 E-value=0.06 Score=45.87 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=39.8
Q ss_pred CCCCeEEEEccccCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLE--GAAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~--ga~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
.+.++|||+|+++|+-++.+++. ...+|+.+|.+++..+.+. .|+..-..
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar-~~~~~ag~ 129 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGL-PVIQKAGV 129 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH-HHHHHCCC
Confidence 46789999999999999977753 1248999999999988654 88876543
No 205
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=95.20 E-value=0.098 Score=43.29 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=30.0
Q ss_pred CCCeEEEEccccCHHHHHHHH-cCCCeEEEEeCCHHHHHHhh
Q 030031 100 SGKRVLELGCGHGLPGIFACL-EGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~ 140 (184)
+.++|+|+|+|+|..++.+++ ...-+++..|+ |++++.+.
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~ 140 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAK 140 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHH
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhccc
Confidence 446899999999999997765 44558999999 67876555
No 206
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=95.17 E-value=0.077 Score=45.61 Aligned_cols=61 Identities=20% Similarity=0.156 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHc--------CCCeEEEEeCCHHHHHHhhHHHHHHh
Q 030031 82 IDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLE--------GAAVIHFQEFNAEVLRYLTIPNVIAN 147 (184)
Q Consensus 82 ~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~--------ga~~V~~tD~s~~~l~~l~~~Nv~~N 147 (184)
..+++++.+.. ...++.+|+|-.||+|-+.+.+... ...+++|+|+++.++..+. -|+..+
T Consensus 32 ~~i~~l~~~~~----~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~-~nl~l~ 100 (311)
T PF02384_consen 32 REIVDLMVKLL----NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAK-LNLLLH 100 (311)
T ss_dssp HHHHHHHHHHH----TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHH-HHHHHT
T ss_pred HHHHHHHHhhh----hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHH-hhhhhh
Confidence 34567777654 2346778999999999998877652 3458999999999988654 566543
No 207
>PLN02823 spermine synthase
Probab=95.07 E-value=0.047 Score=48.50 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=37.9
Q ss_pred CCCeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHH
Q 030031 100 SGKRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLTIPNVIA 146 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~~~Nv~~ 146 (184)
+.++||.+|+|.|.....+.+. +..+|+++|+++++++.++ .+...
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar-~~~~~ 149 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCR-KHLTV 149 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHH-Hhccc
Confidence 5679999999999999877774 5678999999999999776 54433
No 208
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.07 E-value=0.046 Score=50.84 Aligned_cols=47 Identities=13% Similarity=0.173 Sum_probs=36.3
Q ss_pred CCCeEEEEccccCHHHHHHHHcC---------CCeEEEEeCCHHHHHHhhHHHHHHh
Q 030031 100 SGKRVLELGCGHGLPGIFACLEG---------AAVIHFQEFNAEVLRYLTIPNVIAN 147 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~g---------a~~V~~tD~s~~~l~~l~~~Nv~~N 147 (184)
...+|||.+||+|.+.+.++... ...+++.|+++.+++.+. .|+...
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~-~~l~~~ 86 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAK-KLLGEF 86 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHH-HHHhhc
Confidence 45699999999999998776532 146899999999998665 565543
No 209
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=94.91 E-value=0.039 Score=44.38 Aligned_cols=61 Identities=30% Similarity=0.184 Sum_probs=42.3
Q ss_pred HHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCC-e---------EEEEeCCHHHHHHhhHHHHHHhC
Q 030031 83 DLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAA-V---------IHFQEFNAEVLRYLTIPNVIANV 148 (184)
Q Consensus 83 ~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~-~---------V~~tD~s~~~l~~l~~~Nv~~N~ 148 (184)
.+|..|.... ..-++..|||--||+|-+.+.++..+.. . +++.|+++++++.+. .|+..-.
T Consensus 15 ~lA~~ll~la----~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~-~N~~~ag 85 (179)
T PF01170_consen 15 TLAAALLNLA----GWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGAR-ENLKAAG 85 (179)
T ss_dssp HHHHHHHHHT----T--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHH-HHHHHTT
T ss_pred HHHHHHHHHh----CCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHH-HHHHhcc
Confidence 4566666532 1235779999999999999988775432 2 779999999998665 8887643
No 210
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=94.54 E-value=0.14 Score=49.66 Aligned_cols=64 Identities=19% Similarity=0.190 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcC----------------------------------------
Q 030031 83 DLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEG---------------------------------------- 122 (184)
Q Consensus 83 ~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~g---------------------------------------- 122 (184)
.+|..|.... ...-.+..++|-+||+|-+.|.++...
T Consensus 176 tlAaa~l~~a---~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~ 252 (702)
T PRK11783 176 NLAAAILLRS---GWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL 252 (702)
T ss_pred HHHHHHHHHc---CCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 4565555431 121256799999999999999887631
Q ss_pred ---CCeEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 123 ---AAVIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 123 ---a~~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
..+++++|+++++++.+. .|+..+...
T Consensus 253 ~~~~~~i~G~Did~~av~~A~-~N~~~~g~~ 282 (702)
T PRK11783 253 AELPSKFYGSDIDPRVIQAAR-KNARRAGVA 282 (702)
T ss_pred cccCceEEEEECCHHHHHHHH-HHHHHcCCC
Confidence 126999999999999765 999987654
No 211
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=94.35 E-value=0.12 Score=35.76 Aligned_cols=35 Identities=29% Similarity=0.499 Sum_probs=26.9
Q ss_pred EEEEccccCHHHHHHHHcCC--CeEEEEeCCHHHHHHh
Q 030031 104 VLELGCGHGLPGIFACLEGA--AVIHFQEFNAEVLRYL 139 (184)
Q Consensus 104 VLELGcGtGl~gi~aa~~ga--~~V~~tD~s~~~l~~l 139 (184)
++|+|||+|... .+..... ..++++|.++.++...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~ 88 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALA 88 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHH
Confidence 999999999976 3333322 2789999999998873
No 212
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=94.10 E-value=0.031 Score=47.96 Aligned_cols=42 Identities=31% Similarity=0.316 Sum_probs=39.1
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
-+|++|||-..|-|..++.++++||.+|+-++.++++|+++.
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~ 174 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAK 174 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeec
Confidence 479999999999999999999999999999999999998765
No 213
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.06 E-value=0.085 Score=44.50 Aligned_cols=50 Identities=24% Similarity=0.328 Sum_probs=39.3
Q ss_pred CCCCCeEEEEccccCHHHHHHHH-cCCC--eEEEEeCCHHHHHHhhHHHHHHhC
Q 030031 98 SFSGKRVLELGCGHGLPGIFACL-EGAA--VIHFQEFNAEVLRYLTIPNVIANV 148 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa~-~ga~--~V~~tD~s~~~l~~l~~~Nv~~N~ 148 (184)
..+|.+.||+|.|||.++-.+++ .|+. .++++|.-++.++... .|++.-.
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk-~nl~k~i 132 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSK-KNLDKDI 132 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHH-HHHHhhc
Confidence 46899999999999999987764 3332 2399999999999765 8887655
No 214
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.99 E-value=0.092 Score=46.80 Aligned_cols=43 Identities=28% Similarity=0.332 Sum_probs=37.3
Q ss_pred CCCCeEEEEccc-cCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhH
Q 030031 99 FSGKRVLELGCG-HGLPGIFACL-EGAAVIHFQEFNAEVLRYLTI 141 (184)
Q Consensus 99 ~~gkrVLELGcG-tGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~~ 141 (184)
..|.+||=+||| .|++.+.+++ .||++|+++|.++.-|+.+.+
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 457899999999 7999887776 699999999999999997763
No 215
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=93.94 E-value=0.12 Score=44.34 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=34.2
Q ss_pred eEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 103 RVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 103 rVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
+|+||-||.|-+++.+...|...|.++|+++.+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~ 39 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYE 39 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHH
Confidence 69999999999999888889888899999999988665
No 216
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=93.87 E-value=0.18 Score=41.79 Aligned_cols=41 Identities=22% Similarity=0.137 Sum_probs=28.6
Q ss_pred CCCCeEEEEccccCHHHHHHHH-cCCCeEEEEeCCHHHHHHh
Q 030031 99 FSGKRVLELGCGHGLPGIFACL-EGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~-~ga~~V~~tD~s~~~l~~l 139 (184)
-++...+|||||.|-+-+.++. .+.++++|+++.+...+..
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a 82 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLA 82 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHH
Confidence 4577899999999999886664 5777899999998876544
No 217
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.87 E-value=0.12 Score=39.05 Aligned_cols=49 Identities=18% Similarity=0.062 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCC
Q 030031 83 DLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFN 132 (184)
Q Consensus 83 ~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s 132 (184)
..|.||.....+....-+...-.|||||.|++--.+.+.|. .=.|+|.-
T Consensus 41 aIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 41 AIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred HHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 45677776554433333345789999999999999998887 46778763
No 218
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=93.20 E-value=0.44 Score=37.96 Aligned_cols=58 Identities=19% Similarity=0.122 Sum_probs=41.8
Q ss_pred ccccHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 77 LWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 77 ~We~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
...-...|.+.+.+.. ..+|..|||--||+|-.+++|.+.|- +.+++|++++..+.+.
T Consensus 173 ~~~kP~~l~~~lI~~~-----t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 173 PTQKPVELIERLIKAS-----TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAK 230 (231)
T ss_dssp TT-S-HHHHHHHHHHH-----S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHH
T ss_pred eecCCHHHHHHHHHhh-----hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhc
Confidence 3344566777776543 34688999999999999999999986 7999999999887653
No 219
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=92.93 E-value=0.35 Score=39.75 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=26.6
Q ss_pred CCCeEEEEccccC--HHH--HHHHH---cCC---CeEEEEeCCHHHHHHhh
Q 030031 100 SGKRVLELGCGHG--LPG--IFACL---EGA---AVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 100 ~gkrVLELGcGtG--l~g--i~aa~---~ga---~~V~~tD~s~~~l~~l~ 140 (184)
+.-||+-.||+|| ..+ +.+.. ... -+|++||+|+.+|+.+.
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar 81 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKAR 81 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHH
Confidence 3459999999999 233 33333 112 28999999999998775
No 220
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=92.88 E-value=0.19 Score=45.34 Aligned_cols=50 Identities=22% Similarity=0.277 Sum_probs=40.7
Q ss_pred CCeEEEEccccCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHhCCCC
Q 030031 101 GKRVLELGCGHGLPGIFACLE--GAAVIHFQEFNAEVLRYLTIPNVIANVPKK 151 (184)
Q Consensus 101 gkrVLELGcGtGl~gi~aa~~--ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~~ 151 (184)
.-++||-=||||+=|+-.++. ++.+|++-|+|+++++.+. .|++.|....
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~-~N~~~N~~~~ 101 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIK-RNLELNGLED 101 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHH-HHHHHCT-SG
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHH-HhHhhccccC
Confidence 348999999999999976665 6789999999999999765 9999999887
No 221
>KOG2497 consensus Predicted methyltransferase [General function prediction only]
Probab=92.66 E-value=0.13 Score=44.46 Aligned_cols=48 Identities=31% Similarity=0.412 Sum_probs=39.9
Q ss_pred CCCccccccHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCC
Q 030031 72 EGGLKLWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGA 123 (184)
Q Consensus 72 e~G~~~We~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga 123 (184)
.+|..+|+++..|..++.+. +....++++.++|||.++..+.+++...
T Consensus 66 ~tg~~~w~~al~L~~~l~~~----~d~~~~~~v~~l~~gi~~~~~~~a~~~~ 113 (262)
T KOG2497|consen 66 RTGLSVWESALSLEADLRDK----PDLSSELTVEELGCDIALKHVLAARVPD 113 (262)
T ss_pred HhccccchHHHHHHHHHhhC----cccccccchHhhccCHHHHHHHHHhccc
Confidence 36889999999999999873 4447889999999999999977777654
No 222
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=92.59 E-value=0.21 Score=45.11 Aligned_cols=46 Identities=26% Similarity=0.420 Sum_probs=40.7
Q ss_pred CCeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHh
Q 030031 101 GKRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLTIPNVIAN 147 (184)
Q Consensus 101 gkrVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~~~Nv~~N 147 (184)
.++|+|-=||||+=||-.+.. +..+|++-|+||++.++++ .|+..|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik-~Nv~~N 99 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIK-ENVRLN 99 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHH-HHHHhc
Confidence 789999999999999976664 5558999999999999775 999999
No 223
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=92.58 E-value=0.45 Score=41.15 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=30.3
Q ss_pred CCCeEEEEccccC----HHHHHHHHcC------CCeEEEEeCCHHHHHHhh
Q 030031 100 SGKRVLELGCGHG----LPGIFACLEG------AAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 100 ~gkrVLELGcGtG----l~gi~aa~~g------a~~V~~tD~s~~~l~~l~ 140 (184)
+.-||+-.||+|| -+++.+...+ .-+|++||+|..+|+.+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~ 146 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKAR 146 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHh
Confidence 3559999999999 3344443322 248999999999998776
No 224
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=91.97 E-value=0.2 Score=44.84 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=36.0
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
-++..+++||||-|-=.+---+.|.+.++++|+..-.|+.+.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~ 157 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQAR 157 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHH
Confidence 457789999999998777777888889999999988888775
No 225
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=91.39 E-value=0.15 Score=46.96 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=46.3
Q ss_pred CCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCCCCC
Q 030031 98 SFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVPKKL 152 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~~~ 152 (184)
.-.|..|-|+-||.|-..+-+++.+ .+|++-|+++++++.+. .|+..|-....
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk-~ni~lNkv~~~ 299 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLK-ANIKLNKVDPS 299 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHH-Hhccccccchh
Confidence 3457789999999999999999998 48999999999999887 88888877654
No 226
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=91.03 E-value=1.1 Score=38.88 Aligned_cols=47 Identities=30% Similarity=0.204 Sum_probs=39.3
Q ss_pred CCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhC
Q 030031 98 SFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANV 148 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~ 148 (184)
..+..+||-=|||.|.++..+|++|. .+.+.|.|--|+- ..|...|.
T Consensus 54 ~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll---~s~fiLn~ 100 (270)
T PF07942_consen 54 DRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLL---ASNFILNH 100 (270)
T ss_pred CCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHH---HHHHHHcc
Confidence 34567999999999999999999998 7999999999963 25666675
No 227
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=90.94 E-value=0.25 Score=42.55 Aligned_cols=40 Identities=13% Similarity=0.215 Sum_probs=35.9
Q ss_pred CCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 101 GKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 101 gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
...++|+|||-|.+.--+...+..+++.+|.|..|++.+.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~ 112 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCR 112 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhh
Confidence 4679999999999998888888889999999999998765
No 228
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=90.77 E-value=0.51 Score=41.72 Aligned_cols=46 Identities=15% Similarity=0.040 Sum_probs=31.7
Q ss_pred CCCCeEEEEccccCHHHHHHH----Hc-CCCeEEEEeCCHHHHHHhhHHHHH
Q 030031 99 FSGKRVLELGCGHGLPGIFAC----LE-GAAVIHFQEFNAEVLRYLTIPNVI 145 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa----~~-ga~~V~~tD~s~~~l~~l~~~Nv~ 145 (184)
-++..++|||||.|.=.-.+. +. .....+.+|+|.++|+.+. .++.
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~-~~L~ 125 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTL-AELP 125 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHH-Hhhh
Confidence 356689999999997543211 11 1236899999999998765 5554
No 229
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=90.75 E-value=0.49 Score=39.97 Aligned_cols=41 Identities=20% Similarity=0.188 Sum_probs=34.7
Q ss_pred eEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHH
Q 030031 103 RVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNV 144 (184)
Q Consensus 103 rVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv 144 (184)
+++||-||.|.+++.+.+.|...|.++|+++.+.+... .|.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~-~N~ 42 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYK-ANF 42 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHH-HHH
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhh-hcc
Confidence 69999999999999999999888899999999887655 444
No 230
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=90.47 E-value=0.18 Score=43.26 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=32.0
Q ss_pred CCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 98 SFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
..+|.++||+|||.-+.-+..+..-++.|+.+|+.+.-++.+.
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~ 96 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELE 96 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHH
Confidence 4678899999999988877666666779999999998887654
No 231
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=90.25 E-value=0.63 Score=39.36 Aligned_cols=41 Identities=27% Similarity=0.271 Sum_probs=33.6
Q ss_pred CCCeEEEEccccCHHHHHHHHcC-CCeEEEEeCCHHHHHHhh
Q 030031 100 SGKRVLELGCGHGLPGIFACLEG-AAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~g-a~~V~~tD~s~~~l~~l~ 140 (184)
+.++||=+|-|.|...-.+.+.. ..+|+++|+++.+++.+.
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~ 117 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELAR 117 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHH
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHH
Confidence 68899999999999988887765 568999999999999775
No 232
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=90.05 E-value=0.67 Score=38.68 Aligned_cols=38 Identities=21% Similarity=0.119 Sum_probs=30.3
Q ss_pred CCCCCCCeEEEEccccCHHHHHHHHcCCC--eEEEEeCCH
Q 030031 96 NISFSGKRVLELGCGHGLPGIFACLEGAA--VIHFQEFNA 133 (184)
Q Consensus 96 ~~~~~gkrVLELGcGtGl~gi~aa~~ga~--~V~~tD~s~ 133 (184)
.+..++++|+||||--|-.+..++++... .|+++|+.|
T Consensus 41 ~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p 80 (205)
T COG0293 41 KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP 80 (205)
T ss_pred CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence 33446789999999999999988876332 499999986
No 233
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=89.57 E-value=1 Score=41.94 Aligned_cols=50 Identities=18% Similarity=0.186 Sum_probs=40.3
Q ss_pred CCCCeEEEEccccCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLE--GAAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~--ga~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
-+|.+|||++||.|-=+..++.. +...|++.|+++.-++.+. .|+++-..
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~-~nl~r~G~ 163 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLH-ANISRCGV 163 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHH-HHHHHcCC
Confidence 57889999999999999876653 2247999999999998775 89987443
No 234
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=89.41 E-value=0.78 Score=38.81 Aligned_cols=52 Identities=21% Similarity=0.223 Sum_probs=42.9
Q ss_pred CCCeEEEEccccCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHhCCCCC
Q 030031 100 SGKRVLELGCGHGLPGIFACLEG-AAVIHFQEFNAEVLRYLTIPNVIANVPKKL 152 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~g-a~~V~~tD~s~~~l~~l~~~Nv~~N~~~~~ 152 (184)
++.++.|+||=+|++.+++.+.+ ++.+++.|.++.-++.+. .|+..|.....
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~-~~v~~~~l~~~ 68 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAI-RNVKKNNLSER 68 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHH-HHHHhcCCcce
Confidence 45679999999999999988754 578999999999998774 88888765543
No 235
>PRK11524 putative methyltransferase; Provisional
Probab=89.27 E-value=1.8 Score=37.14 Aligned_cols=53 Identities=26% Similarity=0.172 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 82 IDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 82 ~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
..|.+.+... ...+|..|||--||+|-.+++|.+.|= +.+|+|++++-.+.+.
T Consensus 195 ~~L~erlI~~-----~S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~ 247 (284)
T PRK11524 195 EALLKRIILA-----SSNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGL 247 (284)
T ss_pred HHHHHHHHHH-----hCCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHH
Confidence 4555555542 246789999999999999999999975 7999999998887665
No 236
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=88.87 E-value=0.81 Score=39.88 Aligned_cols=39 Identities=15% Similarity=0.066 Sum_probs=28.6
Q ss_pred CeEEEEccccC--HHH--HHHHHcC-----CCeEEEEeCCHHHHHHhh
Q 030031 102 KRVLELGCGHG--LPG--IFACLEG-----AAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 102 krVLELGcGtG--l~g--i~aa~~g-----a~~V~~tD~s~~~l~~l~ 140 (184)
-||+-.||+|| -.+ +.+.... .-+|+|||+|+.+|+.+.
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar 164 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKAR 164 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHH
Confidence 59999999999 333 3333321 237999999999998775
No 237
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=88.43 E-value=0.076 Score=45.02 Aligned_cols=44 Identities=18% Similarity=0.113 Sum_probs=35.5
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHH
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPN 143 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~N 143 (184)
.+.+++||||+|-|-++...+-.- .+|.+|++|..|...+.+.|
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~f-eevyATElS~tMr~rL~kk~ 154 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTF-EEVYATELSWTMRDRLKKKN 154 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchH-HHHHHHHhhHHHHHHHhhcC
Confidence 345899999999999998776553 47999999999988876554
No 238
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=88.08 E-value=1.3 Score=37.35 Aligned_cols=39 Identities=18% Similarity=0.013 Sum_probs=31.4
Q ss_pred CeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhh
Q 030031 102 KRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 102 krVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~ 140 (184)
..+||+|||.|-..+..|+. ....++|+|+....+..+.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l 89 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKAL 89 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHH
Confidence 47999999999998876664 4557899999887776665
No 239
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=88.01 E-value=1.1 Score=40.61 Aligned_cols=51 Identities=22% Similarity=0.156 Sum_probs=40.7
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCC----------------------------------------eEEEEeCCHHHHHH
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAA----------------------------------------VIHFQEFNAEVLRY 138 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~----------------------------------------~V~~tD~s~~~l~~ 138 (184)
..+..++|-=||+|-+.|.+|..+.. .+++.|+++.|++.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 44568999999999999999988641 37799999999997
Q ss_pred hhHHHHHHhCCC
Q 030031 139 LTIPNVIANVPK 150 (184)
Q Consensus 139 l~~~Nv~~N~~~ 150 (184)
+. .|.+.-...
T Consensus 270 Ak-~NA~~AGv~ 280 (381)
T COG0116 270 AK-ANARAAGVG 280 (381)
T ss_pred HH-HHHHhcCCC
Confidence 76 887754433
No 240
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=87.93 E-value=2.3 Score=35.39 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=32.0
Q ss_pred CeEEEEccccCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHH
Q 030031 102 KRVLELGCGHGLPGIFACL-EGAAVIHFQEFNAEVLRYLTIPNVIA 146 (184)
Q Consensus 102 krVLELGcGtGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~~~Nv~~ 146 (184)
.+|||+|||||-=..+++. ...-+..-+|.++..+..+. ..+..
T Consensus 27 ~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~-a~~~~ 71 (204)
T PF06080_consen 27 TRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIR-AWIAE 71 (204)
T ss_pred ceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHH-HHHHh
Confidence 3799999999999986665 44446677999988766554 44444
No 241
>PRK13699 putative methylase; Provisional
Probab=87.65 E-value=2.9 Score=34.95 Aligned_cols=53 Identities=17% Similarity=0.066 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 82 IDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 82 ~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
..|.+.+.+. ..-+|..|||--||+|-.++++.+.|- +.+++|++++-.+.+.
T Consensus 150 ~~l~~~~i~~-----~s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~ 202 (227)
T PRK13699 150 VTSLQPLIES-----FTHPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQ 202 (227)
T ss_pred HHHHHHHHHH-----hCCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHH
Confidence 3455554432 134788999999999999999999886 6999999998887554
No 242
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=87.47 E-value=4 Score=34.96 Aligned_cols=66 Identities=18% Similarity=0.252 Sum_probs=44.7
Q ss_pred CccCCCccccccHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHH-cCCCeEEEEeCCHHHHHHhh
Q 030031 69 GVYEGGLKLWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACL-EGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 69 ~~ye~G~~~We~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~ 140 (184)
..|+.+..+++.++.-+.++.+ .-++.||+||=+| =-=+.|+.++. ...++|+.+|+++.+++.+.
T Consensus 18 ~~~DQ~~~T~eT~~~Ra~~~~~-----~gdL~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~ 84 (243)
T PF01861_consen 18 VELDQGYATPETTLRRAALMAE-----RGDLEGKRILFLG-DDDLTSLALALTGLPKRITVVDIDERLLDFIN 84 (243)
T ss_dssp GGGT---B-HHHHHHHHHHHHH-----TT-STT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHh-----cCcccCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHH
Confidence 3466788899999999999987 3468999999999 55588887776 34569999999999999776
No 243
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=87.32 E-value=0.94 Score=38.16 Aligned_cols=41 Identities=20% Similarity=0.075 Sum_probs=31.2
Q ss_pred CCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 100 SGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
+..++||.|||.|.++-.+...-+.+|..+|..+..++.+.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~ 95 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAK 95 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHH
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHH
Confidence 45699999999999998665555779999999999998775
No 244
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=86.52 E-value=1.3 Score=41.59 Aligned_cols=77 Identities=16% Similarity=0.186 Sum_probs=44.4
Q ss_pred ceeccCCeeeeccccchhhhcCCCCCCCCCCccCC-CccccccHHHHHHHHHHHhhcCCCCCCC---CeEEEEccccCHH
Q 030031 39 EPVNLGELTLLKGRVSTKEVLGLPNSDLVPGVYEG-GLKLWEGSIDLVKALRLDVQNGNISFSG---KRVLELGCGHGLP 114 (184)
Q Consensus 39 e~v~~~~~~~~kg~~~~~~~~~~~~sd~~~~~ye~-G~~~We~s~~La~~l~~~i~~~~~~~~g---krVLELGcGtGl~ 114 (184)
.+|.+..|+..|+.++ ++..+..- -.+.| |-....++....+.+.+.+... ..+ ..+||+|||+|..
T Consensus 61 ~Nvph~~L~~~K~~qn---Wv~~~gd~---~~FPgggt~F~~Ga~~Yid~i~~~~~~~---~~~g~iR~~LDvGcG~aSF 131 (506)
T PF03141_consen 61 ANVPHTKLAEEKADQN---WVRVEGDK---FRFPGGGTMFPHGADHYIDQIAEMIPLI---KWGGGIRTALDVGCGVASF 131 (506)
T ss_pred cccCchHHhhhccccc---ceeecCCE---EEeCCCCccccCCHHHHHHHHHHHhhcc---ccCCceEEEEeccceeehh
Confidence 4666655666666443 22111111 12223 3344556666666676654221 222 3699999999999
Q ss_pred HHHHHHcCCC
Q 030031 115 GIFACLEGAA 124 (184)
Q Consensus 115 gi~aa~~ga~ 124 (184)
|-++..++.-
T Consensus 132 ~a~l~~r~V~ 141 (506)
T PF03141_consen 132 GAYLLERNVT 141 (506)
T ss_pred HHHHhhCCce
Confidence 9999888763
No 245
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=86.52 E-value=1.7 Score=40.61 Aligned_cols=41 Identities=22% Similarity=0.083 Sum_probs=32.7
Q ss_pred CCCeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhh
Q 030031 100 SGKRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~ 140 (184)
.+..+||+|||.|-..+..|+. ....++|+|.....+..+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~ 388 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVL 388 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHH
Confidence 4568999999999988876664 4557999999988776654
No 246
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=86.50 E-value=0.93 Score=38.95 Aligned_cols=40 Identities=20% Similarity=0.361 Sum_probs=29.5
Q ss_pred CCeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhh
Q 030031 101 GKRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 101 gkrVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~ 140 (184)
..+|+|+|||.==+++..... ....+++.|++..+++.+.
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~ 146 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLN 146 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHH
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHH
Confidence 569999999998888754433 2348999999999998765
No 247
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=85.98 E-value=5 Score=34.60 Aligned_cols=71 Identities=20% Similarity=0.137 Sum_probs=49.4
Q ss_pred CCccccccHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHH-cC-CCeEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 73 GGLKLWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACL-EG-AAVIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 73 ~G~~~We~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~-~g-a~~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
|.+.+++.+-.++..+.. ...|.+|||+.|+-|-=+..++. .+ ...|++.|+++.-++.+. +|+.+-...
T Consensus 65 G~~~vQd~sS~l~~~~L~-------~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~-~~~~r~g~~ 136 (283)
T PF01189_consen 65 GLFYVQDESSQLVALALD-------PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLK-ENLKRLGVF 136 (283)
T ss_dssp TSEEEHHHHHHHHHHHHT-------TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHH-HHHHHTT-S
T ss_pred CcEEeccccccccccccc-------ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHH-HHHHhcCCc
Confidence 344566665444444432 35788999999999988876554 32 458999999999998876 888774443
Q ss_pred C
Q 030031 151 K 151 (184)
Q Consensus 151 ~ 151 (184)
+
T Consensus 137 ~ 137 (283)
T PF01189_consen 137 N 137 (283)
T ss_dssp S
T ss_pred e
Confidence 3
No 248
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=85.92 E-value=1.5 Score=38.65 Aligned_cols=43 Identities=28% Similarity=0.311 Sum_probs=35.0
Q ss_pred CCCCeEEEEccc-cCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhH
Q 030031 99 FSGKRVLELGCG-HGLPGIFACL-EGAAVIHFQEFNAEVLRYLTI 141 (184)
Q Consensus 99 ~~gkrVLELGcG-tGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~~ 141 (184)
..+.+|+=+||| .|++++.+++ .|+++|+++|.+++-++.+..
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 344489999999 6888876655 689999999999999987753
No 249
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=85.53 E-value=1.1 Score=37.56 Aligned_cols=54 Identities=13% Similarity=0.063 Sum_probs=33.1
Q ss_pred HHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHc---------CCCeEEEEeCCHHHHH
Q 030031 84 LVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLE---------GAAVIHFQEFNAEVLR 137 (184)
Q Consensus 84 La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~---------ga~~V~~tD~s~~~l~ 137 (184)
+++|+.+........-..-+|+|+|+|+|.+..-.... ..-+++.+|.|+.+.+
T Consensus 2 ia~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~ 64 (252)
T PF02636_consen 2 IARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRE 64 (252)
T ss_dssp HHHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHH
T ss_pred hHHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHH
Confidence 45666665544322223468999999999998644431 1247999999987765
No 250
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.52 E-value=0.99 Score=36.50 Aligned_cols=45 Identities=22% Similarity=0.213 Sum_probs=37.8
Q ss_pred CeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHH
Q 030031 102 KRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIA 146 (184)
Q Consensus 102 krVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~ 146 (184)
.+.+|||+|-|.+-+.++++|...-+++++|+=.+.......++.
T Consensus 74 GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~ 118 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRA 118 (199)
T ss_pred CcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHH
Confidence 368999999999999999999878899999998877666555544
No 251
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=85.32 E-value=2.5 Score=35.93 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=31.0
Q ss_pred CCeEEEEccccCHHHHHHHH-cC--CCeEEEEeCCHHHHHHhhHHHHH
Q 030031 101 GKRVLELGCGHGLPGIFACL-EG--AAVIHFQEFNAEVLRYLTIPNVI 145 (184)
Q Consensus 101 gkrVLELGcGtGl~gi~aa~-~g--a~~V~~tD~s~~~l~~l~~~Nv~ 145 (184)
.-.+.|=.||.|.+--.+.. ++ -..|++.|+++++|+.+. .|+.
T Consensus 52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~-kNL~ 98 (246)
T PF11599_consen 52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELAR-KNLS 98 (246)
T ss_dssp -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHH-HHHH
T ss_pred CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHH-Hhhh
Confidence 34899999999977654443 22 247999999999999765 7765
No 252
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=85.06 E-value=2.4 Score=38.94 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=35.7
Q ss_pred CCeEEEEccccCHHHHHHHHcC-CCeEEEEeCCHHHHHHhh
Q 030031 101 GKRVLELGCGHGLPGIFACLEG-AAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 101 gkrVLELGcGtGl~gi~aa~~g-a~~V~~tD~s~~~l~~l~ 140 (184)
-.+||-||-|-|+-.-.+.+.. ..+|+.+|++|+|++...
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~ 330 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELAS 330 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhh
Confidence 3589999999999998888875 779999999999999776
No 253
>KOG2730 consensus Methylase [General function prediction only]
Probab=85.06 E-value=0.68 Score=39.53 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=38.8
Q ss_pred CCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhC
Q 030031 100 SGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANV 148 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~ 148 (184)
.-.+|+|.-||.|--.+..++.+. .|+++|++|.-|.++. .|++.=+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~Ak-hNaeiYG 140 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACAR-HNAEVYG 140 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHh-ccceeec
Confidence 456899999999999998888887 7999999999888665 7766533
No 254
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=85.01 E-value=2.2 Score=37.09 Aligned_cols=39 Identities=26% Similarity=0.218 Sum_probs=35.2
Q ss_pred CeEEEEccccCHHHHHHHHcC-CCeEEEEeCCHHHHHHhh
Q 030031 102 KRVLELGCGHGLPGIFACLEG-AAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 102 krVLELGcGtGl~gi~aa~~g-a~~V~~tD~s~~~l~~l~ 140 (184)
|+||-+|-|.|-..-.+.+.. ..+++.+|+++++++.+.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar 117 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELAR 117 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHH
Confidence 699999999999999888875 579999999999999776
No 255
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.12 E-value=2 Score=37.56 Aligned_cols=37 Identities=14% Similarity=0.059 Sum_probs=32.2
Q ss_pred EEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 104 VLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 104 VLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
|+||-||.|-+++.+...|...+.+.|+++.+.+...
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~ 37 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYE 37 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHH
Confidence 6899999999999888889866778999999887665
No 256
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=83.92 E-value=1.5 Score=36.19 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHh
Q 030031 83 DLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 83 ~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
.++.++.+.+... +.++++|.-||+|.+++.+...+ .+|+.-|+++..+...
T Consensus 7 ~l~~~I~~~ip~~----~~~~~vepF~G~g~V~~~~~~~~-~~vi~ND~~~~l~~~~ 58 (260)
T PF02086_consen 7 KLAKWIIELIPKN----KHKTYVEPFAGGGSVFLNLKQPG-KRVIINDINPDLINFW 58 (260)
T ss_dssp GGHHHHHHHS-S-----S-SEEEETT-TTSHHHHCC---S-SEEEEEES-HHHHHHH
T ss_pred HHHHHHHHHcCCC----CCCEEEEEecchhHHHHHhcccc-cceeeeechHHHHHHH
Confidence 3566777654221 67899999999999998876654 4899999998776543
No 257
>PRK00536 speE spermidine synthase; Provisional
Probab=81.89 E-value=3.5 Score=35.55 Aligned_cols=41 Identities=12% Similarity=-0.049 Sum_probs=36.8
Q ss_pred CCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhH
Q 030031 100 SGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTI 141 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~ 141 (184)
+.||||=+|-|=|...-.+.+... +|+.+|+++++++.+..
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~ 112 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFIS 112 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHH
Confidence 468999999999999999999864 89999999999998764
No 258
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=81.40 E-value=3 Score=36.82 Aligned_cols=43 Identities=26% Similarity=0.249 Sum_probs=32.8
Q ss_pred CCCCCeEEEEcccc-CHHHHHHHH-cCCCeEEEEeCCHHHHHHhh
Q 030031 98 SFSGKRVLELGCGH-GLPGIFACL-EGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 98 ~~~gkrVLELGcGt-Gl~gi~aa~-~ga~~V~~tD~s~~~l~~l~ 140 (184)
..++.+||.+|||. |...+.+++ .|+.+|+++|.+++.++.+.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~ 226 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMAR 226 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 35688999999876 666665555 56656999999998887664
No 259
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=79.72 E-value=6.2 Score=33.80 Aligned_cols=42 Identities=26% Similarity=0.363 Sum_probs=36.0
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
.+|.|||++|-|.|+..-+.......+=..++.+|++++.++
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr 141 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMR 141 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHH
Confidence 689999999999999998888776656688999999998764
No 260
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=79.31 E-value=4.5 Score=35.45 Aligned_cols=40 Identities=15% Similarity=0.148 Sum_probs=34.8
Q ss_pred CCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 101 GKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 101 gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
..+++||-||.|-+++-+...|..-+.+.|+++..++...
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~ 42 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYK 42 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHH
Confidence 3479999999999999888889878889999999987554
No 261
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=78.77 E-value=4.4 Score=34.80 Aligned_cols=38 Identities=11% Similarity=0.168 Sum_probs=28.6
Q ss_pred CCCCCCCeEEEEccccCHHHHHHHHc------CCCeEEEEeCCH
Q 030031 96 NISFSGKRVLELGCGHGLPGIFACLE------GAAVIHFQEFNA 133 (184)
Q Consensus 96 ~~~~~gkrVLELGcGtGl~gi~aa~~------ga~~V~~tD~s~ 133 (184)
.+.-++..++|+|||.|.++-+++.. ....++.+|-..
T Consensus 14 ~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 14 GLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 33346678999999999999877654 235789999853
No 262
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=77.77 E-value=4.8 Score=34.76 Aligned_cols=70 Identities=20% Similarity=0.146 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhcCC--CCCCCCeEEEEccccC--HHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCCCCC
Q 030031 81 SIDLVKALRLDVQNGN--ISFSGKRVLELGCGHG--LPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVPKKL 152 (184)
Q Consensus 81 s~~La~~l~~~i~~~~--~~~~gkrVLELGcGtG--l~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~~~ 152 (184)
.-+..+++++.+.... .+-++-++||+|.|.- ++-+-.-.+|. +.+++|+++..++.+. .||..|-....
T Consensus 57 RAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~-~ii~~N~~l~~ 130 (292)
T COG3129 57 RADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAK-AIISANPGLER 130 (292)
T ss_pred hhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHH-HHHHcCcchhh
Confidence 3455666666554332 2334457788776632 22223334677 6899999999998775 88888844433
No 263
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=77.47 E-value=14 Score=32.76 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=34.8
Q ss_pred CCCeEEEEccccCHHHHHHHH-cC--CCeEEEEeCCHHHHHHhhHHHHHHhC
Q 030031 100 SGKRVLELGCGHGLPGIFACL-EG--AAVIHFQEFNAEVLRYLTIPNVIANV 148 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~-~g--a~~V~~tD~s~~~l~~l~~~Nv~~N~ 148 (184)
+.-+|||+-||+|..-+-+.. .. ..+|...|+++..++.-. .=+..+.
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~-~li~~~g 185 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGR-ALIAERG 185 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHH-HHHHHcC
Confidence 345999999999998775443 33 368999999999888665 3344433
No 264
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.90 E-value=9.2 Score=32.63 Aligned_cols=53 Identities=23% Similarity=0.275 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHc--CCCeEEEEeCCHHHHHHh
Q 030031 83 DLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLE--GAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 83 ~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~--ga~~V~~tD~s~~~l~~l 139 (184)
+...++...++ .++.|++||+|.=||+-.+..|.. -..+|++.|++++..+..
T Consensus 60 d~g~fl~~li~----~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~ 114 (237)
T KOG1663|consen 60 DKGQFLQMLIR----LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIG 114 (237)
T ss_pred HHHHHHHHHHH----HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHh
Confidence 44555554432 368899999999888887766553 223899999999888755
No 265
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=76.06 E-value=9.4 Score=29.59 Aligned_cols=45 Identities=13% Similarity=0.119 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhcCCCCCCCCeEEEEccccCH-HHHHHHHcCCCeEEEEeCCHH
Q 030031 82 IDLVKALRLDVQNGNISFSGKRVLELGCGHGL-PGIFACLEGAAVIHFQEFNAE 134 (184)
Q Consensus 82 ~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl-~gi~aa~~ga~~V~~tD~s~~ 134 (184)
.++++|+.+. ....+|.|+|-|.=. .+..+...|. .|++||+++.
T Consensus 2 ~~~a~~ia~~-------~~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~ 47 (127)
T PF03686_consen 2 VDFAEYIARL-------NNYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR 47 (127)
T ss_dssp HHHHHHHHHH-------S-SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S
T ss_pred chHHHHHHHh-------CCCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc
Confidence 3577777763 233499999999643 3345566786 8999999986
No 266
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=76.03 E-value=7.1 Score=29.32 Aligned_cols=43 Identities=19% Similarity=0.188 Sum_probs=24.7
Q ss_pred EEccccCHHH--HHHH--Hc-CCCeEEEEeCCHHHHHHhhHHH--HHHhCC
Q 030031 106 ELGCGHGLPG--IFAC--LE-GAAVIHFQEFNAEVLRYLTIPN--VIANVP 149 (184)
Q Consensus 106 ELGcGtGl~g--i~aa--~~-ga~~V~~tD~s~~~l~~l~~~N--v~~N~~ 149 (184)
|+|++.|..+ +... .+ ...+|+++|.++..++.+. .| +..|-.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~-~~~~~~l~~~ 50 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLK-RNLNLALNDK 50 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHH-HH--HHHTTT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHh-HHHHHHhcCC
Confidence 7999999333 3322 23 2358999999999998776 67 666643
No 267
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=75.82 E-value=1.3 Score=40.03 Aligned_cols=54 Identities=19% Similarity=0.044 Sum_probs=45.1
Q ss_pred CCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHh--hHHHHHHhCCCCC
Q 030031 98 SFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYL--TIPNVIANVPKKL 152 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l--~~~Nv~~N~~~~~ 152 (184)
.-.|+-|.|=--|||-+-+.++..|| .|+|+|++-.|++.- ...||.+|..+=.
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg 261 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYG 261 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhC
Confidence 46789999999999999999999998 799999999888721 2478888887754
No 268
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=74.95 E-value=9.1 Score=34.71 Aligned_cols=59 Identities=22% Similarity=0.220 Sum_probs=39.8
Q ss_pred ccccccHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHH
Q 030031 75 LKLWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIP 142 (184)
Q Consensus 75 ~~~We~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~ 142 (184)
..+||......+.|. .-++.+||-+.+|..-. +..+..+.++|+++|+|+..+.++..+
T Consensus 18 ~~~WEDp~vD~~aL~--------i~~~d~vl~ItSaG~N~-L~yL~~~P~~I~aVDlNp~Q~aLleLK 76 (380)
T PF11899_consen 18 AQCWEDPRVDMEALN--------IGPDDRVLTITSAGCNA-LDYLLAGPKRIHAVDLNPAQNALLELK 76 (380)
T ss_pred ccccCCcHHHHHHhC--------CCCCCeEEEEccCCchH-HHHHhcCCceEEEEeCCHHHHHHHHHH
Confidence 458998876555554 34677899886554333 333445667999999999887766533
No 269
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=73.86 E-value=5.7 Score=33.31 Aligned_cols=36 Identities=14% Similarity=0.062 Sum_probs=27.9
Q ss_pred CCCCCCeEEEEccccCHHHHHHHHc--CCCeEEEEeCC
Q 030031 97 ISFSGKRVLELGCGHGLPGIFACLE--GAAVIHFQEFN 132 (184)
Q Consensus 97 ~~~~gkrVLELGcGtGl~gi~aa~~--ga~~V~~tD~s 132 (184)
+.-++.+|||+||.-|.++..+.++ ....|.++|+-
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll 103 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL 103 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence 3446889999999999999877764 23468888874
No 270
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=73.56 E-value=1.3 Score=41.54 Aligned_cols=52 Identities=23% Similarity=0.215 Sum_probs=42.9
Q ss_pred CCCCeEEEEccccCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHhCCCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLE--GAAVIHFQEFNAEVLRYLTIPNVIANVPKK 151 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~--ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~~ 151 (184)
.++-+|||-=|+||+-+|.-++. |..+|++-|.+++.++.+. .|++.|....
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~-~Nv~~N~v~~ 161 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQ-RNVELNGVED 161 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHH-hhhhhcCchh
Confidence 34568999999999999977663 6678999999999998765 9999995443
No 271
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=73.53 E-value=10 Score=32.05 Aligned_cols=69 Identities=26% Similarity=0.333 Sum_probs=45.8
Q ss_pred cCCC-ccccccHH-HHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHH-HcCCCeEEEEeCCHHHHHHhh
Q 030031 71 YEGG-LKLWEGSI-DLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFAC-LEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 71 ye~G-~~~We~s~-~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa-~~ga~~V~~tD~s~~~l~~l~ 140 (184)
|+++ .+.|+.-. .|+..+..-+.. ...-+|.+||=||+.+|-.---.+ -.|...|.++++++.+.+.+.
T Consensus 46 ~~~~eYR~Wnp~RSKLaAaIl~Gl~~-~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl 117 (231)
T COG1889 46 VEGEEYREWNPRRSKLAAAILKGLKN-FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELL 117 (231)
T ss_pred ecCcceeeeCcchhHHHHHHHcCccc-CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHH
Confidence 4444 68998853 455555543211 123468899999999996554333 345557999999999887664
No 272
>PRK10458 DNA cytosine methylase; Provisional
Probab=73.19 E-value=7 Score=36.43 Aligned_cols=40 Identities=20% Similarity=0.141 Sum_probs=34.4
Q ss_pred CCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 101 GKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 101 gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
.-+++||-||.|-+++.+-..|...|.+.|+++.+.+...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~ 127 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYK 127 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHH
Confidence 4589999999999999888888877788999998887654
No 273
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=72.64 E-value=2.4 Score=38.54 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=26.5
Q ss_pred CCeEEEEccccCHHHHHHHH---------c---C----CCeEEEEeCCHHHHHHh
Q 030031 101 GKRVLELGCGHGLPGIFACL---------E---G----AAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 101 gkrVLELGcGtGl~gi~aa~---------~---g----a~~V~~tD~s~~~l~~l 139 (184)
.-+|+|+|||+|..++.+.. + + --+|++.|+..+-.+.+
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtl 118 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTL 118 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHH
Confidence 45899999999988765431 1 1 13788899876555443
No 274
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=72.08 E-value=14 Score=32.65 Aligned_cols=46 Identities=7% Similarity=0.026 Sum_probs=36.6
Q ss_pred CCCCeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHH
Q 030031 99 FSGKRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYLTIPNVI 145 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l~~~Nv~ 145 (184)
.+|..++|.-||.|--+..+++. +..+|++.|.++.+++.+. ..+.
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak-~~L~ 65 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAK-ERLS 65 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHH-HHHh
Confidence 45678999999999999877754 3358999999999998664 4443
No 275
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=72.06 E-value=7.3 Score=33.74 Aligned_cols=42 Identities=12% Similarity=-0.014 Sum_probs=28.9
Q ss_pred CCCCeEEEEccc-cCHHHHHHHH--cCCCeEEEEeCCHHHHHHhh
Q 030031 99 FSGKRVLELGCG-HGLPGIFACL--EGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 99 ~~gkrVLELGcG-tGl~gi~aa~--~ga~~V~~tD~s~~~l~~l~ 140 (184)
..|.+||=+||| .|+..+.+++ .|+.+|+++|.+++-++.+.
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~ 206 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFS 206 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHh
Confidence 468899999975 3444444343 46668999999987776554
No 276
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=71.89 E-value=8.2 Score=33.28 Aligned_cols=42 Identities=31% Similarity=0.335 Sum_probs=29.0
Q ss_pred CCCCeEEEEccc-cCHHHHHHHH-cCCCeEEEEeCCHHHHHHhh
Q 030031 99 FSGKRVLELGCG-HGLPGIFACL-EGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 99 ~~gkrVLELGcG-tGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~ 140 (184)
.++++||=.||| .|+..+.+++ .|+++|+++|.+++-++.+.
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~ 211 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAR 211 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHH
Confidence 468899988874 2333333343 57778999999988887654
No 277
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.39 E-value=16 Score=32.22 Aligned_cols=51 Identities=24% Similarity=0.169 Sum_probs=39.8
Q ss_pred CCCCCCCCeEEEEccccCH---HHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHh
Q 030031 95 GNISFSGKRVLELGCGHGL---PGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIAN 147 (184)
Q Consensus 95 ~~~~~~gkrVLELGcGtGl---~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N 147 (184)
...+++|+.||==|.|+|+ +++.++++|+ ++...|++.+-.+... .+++.+
T Consensus 32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv-~~~~~~ 85 (300)
T KOG1201|consen 32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETV-KEIRKI 85 (300)
T ss_pred chhhccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHH-HHHHhc
Confidence 4557899999999999995 5567788898 7999999988776543 555554
No 278
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=70.10 E-value=7.9 Score=32.66 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=18.5
Q ss_pred CCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCH
Q 030031 100 SGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNA 133 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~ 133 (184)
++..|-|+|||-+.++-.+ ..+. +|+..|+-+
T Consensus 72 ~~~viaD~GCGdA~la~~~-~~~~-~V~SfDLva 103 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAV-PNKH-KVHSFDLVA 103 (219)
T ss_dssp TTS-EEEES-TT-HHHHH---S----EEEEESS-
T ss_pred CCEEEEECCCchHHHHHhc-ccCc-eEEEeeccC
Confidence 4568999999999998443 2333 699999853
No 279
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=69.97 E-value=8.7 Score=36.21 Aligned_cols=41 Identities=29% Similarity=0.379 Sum_probs=34.0
Q ss_pred CCCCeEEEEccc-cCHHHHHHHH-cCCCeEEEEeCCHHHHHHhh
Q 030031 99 FSGKRVLELGCG-HGLPGIFACL-EGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 99 ~~gkrVLELGcG-tGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~ 140 (184)
..+.+|+=+||| .|+..+.+++ +|+ .|+++|.+++.++.+.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~ae 205 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVE 205 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 468899999999 6788876665 688 7999999999888765
No 280
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=69.42 E-value=9.9 Score=34.07 Aligned_cols=42 Identities=24% Similarity=0.179 Sum_probs=31.7
Q ss_pred CCCCCeEEEEccc-cCHHHHHHHH-cCCCeEEEEeCCHHHHHHhh
Q 030031 98 SFSGKRVLELGCG-HGLPGIFACL-EGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 98 ~~~gkrVLELGcG-tGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~ 140 (184)
..+|++|+=.|+| .|.+++..++ .|+ +|+++|.+++-++.++
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~ 207 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAK 207 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHH
Confidence 3568899888888 3455566666 785 8999999998776554
No 281
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=68.44 E-value=14 Score=34.14 Aligned_cols=38 Identities=26% Similarity=0.498 Sum_probs=29.8
Q ss_pred CCC-CeEEEEccccCHHHHHHHH-cCCCeEEEEeCCHHHHH
Q 030031 99 FSG-KRVLELGCGHGLPGIFACL-EGAAVIHFQEFNAEVLR 137 (184)
Q Consensus 99 ~~g-krVLELGcGtGl~gi~aa~-~ga~~V~~tD~s~~~l~ 137 (184)
+-| +.|+|+|+|-|.++-+++. .|. .|.++|-|....+
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y~l-sV~aIegsq~~~~ 190 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGYGL-SVKAIEGSQRLVE 190 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhccCc-eEEEeccchHHHH
Confidence 444 5899999999999988776 455 7999999965443
No 282
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=68.33 E-value=12 Score=33.85 Aligned_cols=43 Identities=30% Similarity=0.347 Sum_probs=32.7
Q ss_pred CCCCCeEEEEccc-cCHHHHHHHH-cCCCeEEEEeCCHHHHHHhh
Q 030031 98 SFSGKRVLELGCG-HGLPGIFACL-EGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 98 ~~~gkrVLELGcG-tGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~ 140 (184)
...|.+|.=+||| .|+-.+.-++ .|+.+|+++|++++-++++.
T Consensus 183 v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~ 227 (366)
T COG1062 183 VEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAK 227 (366)
T ss_pred CCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHH
Confidence 3456777777776 5777775554 69999999999998888765
No 283
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=67.80 E-value=11 Score=34.62 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=37.9
Q ss_pred CCCCCCCCeEEEEccccCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHhCCCCCCCC
Q 030031 95 GNISFSGKRVLELGCGHGLPGIFACLE--GAAVIHFQEFNAEVLRYLTIPNVIANVPKKLQPA 155 (184)
Q Consensus 95 ~~~~~~gkrVLELGcGtGl~gi~aa~~--ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~~~~~~ 155 (184)
...+|+.+++||+|.|-|.-..++-.. --+.++.++.|+ .|+.+- .-+..|+....+.+
T Consensus 108 ~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp-~lrkV~-~tl~~nv~t~~td~ 168 (484)
T COG5459 108 RVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP-ALRKVG-DTLAENVSTEKTDW 168 (484)
T ss_pred hCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCH-HHHHHH-HHHHhhcccccCCC
Confidence 345789999999999876544333221 224567777876 444443 77888887766443
No 284
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=67.70 E-value=6.6 Score=34.48 Aligned_cols=50 Identities=20% Similarity=0.330 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhc-CCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCC
Q 030031 82 IDLVKALRLDVQN-GNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFN 132 (184)
Q Consensus 82 ~~La~~l~~~i~~-~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s 132 (184)
..|..|+.+-+.. ...+.+|+.+.|+-+|||++|-++-+.|. .|++-|+.
T Consensus 8 ~~LlsFi~~~i~~~~k~~~s~k~f~DiFaGtGVV~~~fkk~~n-~iiaNDle 58 (330)
T COG3392 8 YKLLSFIKENIHEVKKEDLSGKIFCDIFAGTGVVGRFFKKAGN-KIIANDLE 58 (330)
T ss_pred HHHHHHHHHHHHHHhhcccCCCeeeeeccCccHHHHHHHHhcc-hhhhchHH
Confidence 3455666654432 34567889999999999999999999987 69998874
No 285
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=66.64 E-value=12 Score=30.27 Aligned_cols=30 Identities=20% Similarity=0.281 Sum_probs=18.5
Q ss_pred ccCHHHH----HHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 110 GHGLPGI----FACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 110 GtGl~gi----~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
|.|++|+ .++..|. +|+++|.+++.++.+.
T Consensus 7 GlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~ 40 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALN 40 (185)
T ss_dssp --STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHH
T ss_pred CCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHh
Confidence 5555554 3445676 8999999999887654
No 286
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=66.60 E-value=24 Score=31.45 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=39.9
Q ss_pred CCCCCeEEEEccccCHHHHHHHHcC---CCeEEEEeCCHHHHHHhhHHHHHHhCCCC
Q 030031 98 SFSGKRVLELGCGHGLPGIFACLEG---AAVIHFQEFNAEVLRYLTIPNVIANVPKK 151 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa~~g---a~~V~~tD~s~~~l~~l~~~Nv~~N~~~~ 151 (184)
...|.+|||+-++-|-=+..++... ...|++.|.++.-++.+. .|+.+=...+
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~-~nl~RlG~~n 209 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLR-ENLKRLGVRN 209 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHH-HHHHHcCCCc
Confidence 4678999999999887776555442 235799999999998775 8888744443
No 287
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=65.77 E-value=12 Score=33.60 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=27.4
Q ss_pred CCCCeEEEEcccc-CHHHHHHH-HcCCCeEEEEeCCHHHHHHhh
Q 030031 99 FSGKRVLELGCGH-GLPGIFAC-LEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 99 ~~gkrVLELGcGt-Gl~gi~aa-~~ga~~V~~tD~s~~~l~~l~ 140 (184)
.+|..|.=+|+|. |+--+.-+ .+||++++++|+|++=.+...
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak 234 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAK 234 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHH
Confidence 3455566666553 33333323 479999999999998877654
No 288
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=64.59 E-value=28 Score=31.59 Aligned_cols=54 Identities=17% Similarity=-0.016 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHH---------cCCCeEEEEeCCHHHHH
Q 030031 83 DLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACL---------EGAAVIHFQEFNAEVLR 137 (184)
Q Consensus 83 ~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~---------~ga~~V~~tD~s~~~l~ 137 (184)
.++.|+.+..... -....-.++|+|.|+|.+..-+.+ ..+.++..++.|++..+
T Consensus 61 lla~~~~~~wq~~-g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~ 123 (370)
T COG1565 61 LLAEQFLQLWQEL-GRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRA 123 (370)
T ss_pred HHHHHHHHHHHHh-cCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHH
Confidence 4566666654321 112334799999999998853332 13568999999987765
No 289
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=62.57 E-value=29 Score=29.52 Aligned_cols=66 Identities=23% Similarity=0.289 Sum_probs=41.7
Q ss_pred CccccccHH-HHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHH-cC-CCeEEEEeCCHHHHHHhh
Q 030031 74 GLKLWEGSI-DLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACL-EG-AAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 74 G~~~We~s~-~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~-~g-a~~V~~tD~s~~~l~~l~ 140 (184)
.++.|+.-. .|+..+..-+. .....+|.+||-||+.+|-.---.+- .| ...|.+++.++.+.+.+.
T Consensus 47 eYR~W~P~RSKLaAai~~Gl~-~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~ 115 (229)
T PF01269_consen 47 EYRVWNPFRSKLAAAILKGLE-NIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLL 115 (229)
T ss_dssp EEEEE-TTT-HHHHHHHTT-S---S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHH
T ss_pred ceeecCchhhHHHHHHHcCcc-ccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHH
Confidence 678998853 46666654321 12335688999999999976654443 33 347999999998877663
No 290
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=62.29 E-value=14 Score=31.51 Aligned_cols=42 Identities=19% Similarity=-0.052 Sum_probs=28.6
Q ss_pred CCCCeEEEEccc-cCHHHHHHHH-cCCCeEEEEeCCHHHHHHhh
Q 030031 99 FSGKRVLELGCG-HGLPGIFACL-EGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 99 ~~gkrVLELGcG-tGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~ 140 (184)
.++++||=+||| .|+..+.+++ .|+..|.++|.+++.++.+.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~ 186 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGAT 186 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhh
Confidence 357788888875 3445554444 58877888899887776553
No 291
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=62.14 E-value=20 Score=31.70 Aligned_cols=43 Identities=21% Similarity=0.092 Sum_probs=33.1
Q ss_pred CCCCCCeEEEEccccCHHHHHHHHcC--CCeEEEEeCCHHHHHHh
Q 030031 97 ISFSGKRVLELGCGHGLPGIFACLEG--AAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 97 ~~~~gkrVLELGcGtGl~gi~aa~~g--a~~V~~tD~s~~~l~~l 139 (184)
....|.+|||-|.|+|-++.++++.- -.+++-.|+...-.+.+
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka 146 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKA 146 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHH
Confidence 34678999999999999999888752 23788999976554444
No 292
>PRK08328 hypothetical protein; Provisional
Probab=61.85 E-value=8.8 Score=32.01 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=27.6
Q ss_pred CCCCCeEEEEccc-cCHH-HHHHHHcCCCeEEEEeCCH
Q 030031 98 SFSGKRVLELGCG-HGLP-GIFACLEGAAVIHFQEFNA 133 (184)
Q Consensus 98 ~~~gkrVLELGcG-tGl~-gi~aa~~ga~~V~~tD~s~ 133 (184)
.+++++|+=+||| .|.. ...+++.|..+++.+|.+.
T Consensus 24 ~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 24 KLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 3567899999999 3433 3467788999999999873
No 293
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=61.06 E-value=8.2 Score=34.83 Aligned_cols=53 Identities=25% Similarity=0.210 Sum_probs=41.1
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCCCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVPKK 151 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~~ 151 (184)
+.+.+++|+|||.|-+..+.+..+...+++.|+++.-+......++..++...
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k 161 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNK 161 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhh
Confidence 45568999999999999988877766899999998777666555555555443
No 294
>PLN02740 Alcohol dehydrogenase-like
Probab=60.85 E-value=16 Score=32.16 Aligned_cols=41 Identities=24% Similarity=0.243 Sum_probs=28.8
Q ss_pred CCCCCeEEEEccccCHHHHH---HHH-cCCCeEEEEeCCHHHHHHhh
Q 030031 98 SFSGKRVLELGCGHGLPGIF---ACL-EGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~---aa~-~ga~~V~~tD~s~~~l~~l~ 140 (184)
..+|++||=.|| |-+|+. +++ +|+.+|+++|.+++-++.+.
T Consensus 196 ~~~g~~VlV~G~--G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~ 240 (381)
T PLN02740 196 VQAGSSVAIFGL--GAVGLAVAEGARARGASKIIGVDINPEKFEKGK 240 (381)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHH
Confidence 456889999986 455543 333 57767999999887776553
No 295
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=60.65 E-value=9.8 Score=37.04 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=28.9
Q ss_pred CCCCCeEEEEcccc-CH-HHHHHHHcCCCeEEEEeCCH
Q 030031 98 SFSGKRVLELGCGH-GL-PGIFACLEGAAVIHFQEFNA 133 (184)
Q Consensus 98 ~~~gkrVLELGcGt-Gl-~gi~aa~~ga~~V~~tD~s~ 133 (184)
.+++.+||=+|||+ |- +...++..|..+++++|.+.
T Consensus 335 kL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~ 372 (664)
T TIGR01381 335 RYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGK 372 (664)
T ss_pred HHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 35678999999996 54 44578889999999999863
No 296
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=60.22 E-value=10 Score=35.55 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=37.8
Q ss_pred CeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHH
Q 030031 102 KRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNV 144 (184)
Q Consensus 102 krVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv 144 (184)
-++|.+|||.--+....-+-|...|+.+|+|+-+++.....|.
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~ 92 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA 92 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc
Confidence 3899999999999998888899999999999999987766654
No 297
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=59.45 E-value=43 Score=26.69 Aligned_cols=38 Identities=21% Similarity=0.290 Sum_probs=28.5
Q ss_pred CCCCCCeEEEEccc--cCHHH-HHHHHcCCCeEEEEeCCHHH
Q 030031 97 ISFSGKRVLELGCG--HGLPG-IFACLEGAAVIHFQEFNAEV 135 (184)
Q Consensus 97 ~~~~gkrVLELGcG--tGl~g-i~aa~~ga~~V~~tD~s~~~ 135 (184)
..+++++||=+|+| .|.+. -.+...|+ +|+.++-..+-
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~~~ 80 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKTKN 80 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCchh
Confidence 46899999999999 37744 45556777 69998887543
No 298
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=59.31 E-value=20 Score=29.93 Aligned_cols=42 Identities=29% Similarity=0.394 Sum_probs=27.5
Q ss_pred CCCCeEEEEccc-cCHHHHHHHH-cCCCeEEEEeCCHHHHHHhh
Q 030031 99 FSGKRVLELGCG-HGLPGIFACL-EGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 99 ~~gkrVLELGcG-tGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~ 140 (184)
.++++||=.|+| .|+..+.+++ +|+.+|+++|.+++-++.+.
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~ 162 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELAL 162 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 478899999874 2333333333 57766999998877666543
No 299
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=58.94 E-value=20 Score=31.39 Aligned_cols=43 Identities=23% Similarity=0.213 Sum_probs=29.0
Q ss_pred CCCCCeEEEEccc-cCHHHHHHHH-cCCCeEEEEeCCHHHHHHhh
Q 030031 98 SFSGKRVLELGCG-HGLPGIFACL-EGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 98 ~~~gkrVLELGcG-tGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~ 140 (184)
...|.+||=.||| .|+..+.+++ .|+.+|+++|.+++-++.+.
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~ 227 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAK 227 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 3568899999874 2333344444 57767999999887776553
No 300
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=58.87 E-value=9.5 Score=32.13 Aligned_cols=35 Identities=23% Similarity=0.509 Sum_probs=26.6
Q ss_pred CCCCCeEEEEccc-cCHHH-HHHHHcCCCeEEEEeCC
Q 030031 98 SFSGKRVLELGCG-HGLPG-IFACLEGAAVIHFQEFN 132 (184)
Q Consensus 98 ~~~gkrVLELGcG-tGl~g-i~aa~~ga~~V~~tD~s 132 (184)
.++.++|+=+||| .|... ..+++.|..+++.+|.+
T Consensus 29 ~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 29 KLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred HhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 3678899999997 33332 35667898899999987
No 301
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.67 E-value=24 Score=27.27 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=29.0
Q ss_pred HHHHHHHHhhcCCCCCCCCeEEEEccccCH-HHHHHHHcCCCeEEEEeCCHH
Q 030031 84 LVKALRLDVQNGNISFSGKRVLELGCGHGL-PGIFACLEGAAVIHFQEFNAE 134 (184)
Q Consensus 84 La~~l~~~i~~~~~~~~gkrVLELGcGtGl-~gi~aa~~ga~~V~~tD~s~~ 134 (184)
++.++..+ ....+|.|+|.|-=+ ++-.++++|. .|+++|+++.
T Consensus 4 ~a~~iAre-------~~~gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~ 47 (129)
T COG1255 4 VAEYIARE-------NARGKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK 47 (129)
T ss_pred HHHHHHHH-------hcCCcEEEEccchHHHHHHHHHHcCC-cEEEEecccc
Confidence 45666653 223489999988532 2335667786 6999999975
No 302
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=57.50 E-value=57 Score=26.45 Aligned_cols=42 Identities=29% Similarity=0.301 Sum_probs=31.9
Q ss_pred CCCCCCCeEEEEccccCHHHHHHH----HcCCCeEEEEeCCHHHHHHhh
Q 030031 96 NISFSGKRVLELGCGHGLPGIFAC----LEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 96 ~~~~~gkrVLELGcGtGl~gi~aa----~~ga~~V~~tD~s~~~l~~l~ 140 (184)
...++|++|+=+|+| -+|..++ ..|+ +|+++|.+++.++.+.
T Consensus 23 ~~~l~gk~v~I~G~G--~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~ 68 (200)
T cd01075 23 TDSLEGKTVAVQGLG--KVGYKLAEHLLEEGA-KLIVADINEEAVARAA 68 (200)
T ss_pred CCCCCCCEEEEECCC--HHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence 456899999999998 4555443 4687 7999999988776554
No 303
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=57.43 E-value=18 Score=32.55 Aligned_cols=49 Identities=24% Similarity=0.150 Sum_probs=37.5
Q ss_pred CCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCCCC
Q 030031 99 FSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVPKK 151 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~~ 151 (184)
.+.-+||-=|||.|.++.-++..|. ++-+-+.|--|+-+ .+...|..+.
T Consensus 149 r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~---S~FiLN~~~~ 197 (369)
T KOG2798|consen 149 RTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLIC---SSFILNYCKQ 197 (369)
T ss_pred ccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHH---HHHHHHhhcc
Confidence 3445899999999999999999988 58888999888642 4455555443
No 304
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=57.35 E-value=11 Score=30.72 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=27.1
Q ss_pred CCCCCeEEEEcccc-C-HHHHHHHHcCCCeEEEEeCC
Q 030031 98 SFSGKRVLELGCGH-G-LPGIFACLEGAAVIHFQEFN 132 (184)
Q Consensus 98 ~~~gkrVLELGcGt-G-l~gi~aa~~ga~~V~~tD~s 132 (184)
.+++++||=+|||. | .....+++.|..+++.+|.+
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 36788999999993 3 33346777898899999987
No 305
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=57.13 E-value=11 Score=31.74 Aligned_cols=53 Identities=19% Similarity=0.016 Sum_probs=33.9
Q ss_pred ccHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCH
Q 030031 79 EGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNA 133 (184)
Q Consensus 79 e~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~ 133 (184)
+++..+.+||..............++||+||=+.-..+. ..+.-.|+.+|+++
T Consensus 30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns 82 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNS 82 (219)
T ss_pred chhHHHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCC
Confidence 567788888887543222222235999999975443322 23444699999986
No 306
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=56.66 E-value=33 Score=31.45 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=31.2
Q ss_pred CCCCCCCeEEEEcccc-CHHHHHHH-HcCCCeEEEEeCCHHHHHHhh
Q 030031 96 NISFSGKRVLELGCGH-GLPGIFAC-LEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 96 ~~~~~gkrVLELGcGt-Gl~gi~aa-~~ga~~V~~tD~s~~~l~~l~ 140 (184)
...+.|++|+=+|||. |+.....+ ..|+ +|+.+|.++.-++.+.
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~ 242 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAA 242 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHH
Confidence 3457899999999994 54444333 3687 7999999987655443
No 307
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=56.57 E-value=5.1 Score=28.53 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=5.8
Q ss_pred EEEccccCHHHHHHHHc----CCCeEEEEeCCHH
Q 030031 105 LELGCGHGLPGIFACLE----GAAVIHFQEFNAE 134 (184)
Q Consensus 105 LELGcGtGl~gi~aa~~----ga~~V~~tD~s~~ 134 (184)
||+|+..|.-++.+++. +..+++++|..+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~ 34 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG 34 (106)
T ss_dssp --------------------------EEEESS--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc
Confidence 69999999888765542 2237999999984
No 308
>PRK08862 short chain dehydrogenase; Provisional
Probab=55.97 E-value=31 Score=28.05 Aligned_cols=42 Identities=14% Similarity=0.113 Sum_probs=31.6
Q ss_pred CCCCCeEEEEccccCHH---HHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 98 SFSGKRVLELGCGHGLP---GIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~---gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
.++++++|=.|++.|+- ...+++.|+ +|+.++.+++.++.+.
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~ 46 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTY 46 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence 36789999999999873 334556787 6999999888776553
No 309
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=55.94 E-value=24 Score=30.59 Aligned_cols=43 Identities=26% Similarity=0.396 Sum_probs=28.5
Q ss_pred CCCCCeEEEEccc-cCHHHHHHHH-cCCCeEEEEeCCHHHHHHhh
Q 030031 98 SFSGKRVLELGCG-HGLPGIFACL-EGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 98 ~~~gkrVLELGcG-tGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~ 140 (184)
..+|.+||=.||| .|+..+.+++ .|+.+|+++|.+++-++.+.
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~ 218 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAR 218 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 3468899988864 2333343444 57767999999887776553
No 310
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=55.70 E-value=36 Score=25.65 Aligned_cols=43 Identities=28% Similarity=0.345 Sum_probs=31.7
Q ss_pred CCCCCeEEEEccccCHHHH--HHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 98 SFSGKRVLELGCGHGLPGI--FACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi--~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
.+++++||=+|+|.---++ .++..|+++|+.+.-+.+-.+.+.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~ 53 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALA 53 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHH
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHH
Confidence 5789999999998432222 455679988999999977666554
No 311
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=55.17 E-value=26 Score=27.94 Aligned_cols=40 Identities=30% Similarity=0.348 Sum_probs=28.8
Q ss_pred CCCCeEEEEcccc-CHHHHHHHH-cCCCeEEEEeCCHHHHHHh
Q 030031 99 FSGKRVLELGCGH-GLPGIFACL-EGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 99 ~~gkrVLELGcGt-Gl~gi~aa~-~ga~~V~~tD~s~~~l~~l 139 (184)
.++.+||-.|+|+ |...+.+++ .| .+|++++.+++..+.+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~ 174 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELA 174 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHH
Confidence 5788999999986 444444444 46 4899999998776654
No 312
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=55.02 E-value=24 Score=29.75 Aligned_cols=70 Identities=14% Similarity=0.023 Sum_probs=46.6
Q ss_pred ccccccHHHHHHHHHHHhhcCCCCCCCCeEEEEccc-cCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHH
Q 030031 75 LKLWEGSIDLVKALRLDVQNGNISFSGKRVLELGCG-HGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIA 146 (184)
Q Consensus 75 ~~~We~s~~La~~l~~~i~~~~~~~~gkrVLELGcG-tGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~ 146 (184)
.++|+--...++.-.+.+......+++++||=+|.= ||...-.+... +.+|+..|++|.|-..+. +||+.
T Consensus 19 ~~v~Dvv~eI~~~K~~ai~~~~~~~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~lp-~~v~F 89 (254)
T COG4017 19 TRVVDVVNEIAKKKYQAIRDFLEGEEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGFLP-NNVKF 89 (254)
T ss_pred CcHHHHHHHHHHHHHHHhhhhhcccCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhcCC-CCccH
Confidence 446776655555555555544456788999999875 45444333333 668999999998876655 77765
No 313
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=54.64 E-value=30 Score=28.90 Aligned_cols=54 Identities=20% Similarity=0.192 Sum_probs=30.3
Q ss_pred CccccccHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHH----c-CCCeEEEEeCC
Q 030031 74 GLKLWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACL----E-GAAVIHFQEFN 132 (184)
Q Consensus 74 G~~~We~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~----~-ga~~V~~tD~s 132 (184)
|..++....+++.+-.-.. ..+.+.|+|+|.-.|--.++.|. . +..+|+++|++
T Consensus 11 G~pi~q~P~Dm~~~qeli~-----~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDId 69 (206)
T PF04989_consen 11 GRPIIQYPQDMVAYQELIW-----ELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDID 69 (206)
T ss_dssp TEEESS-HHHHHHHHHHHH-----HH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-
T ss_pred CeehhcCHHHHHHHHHHHH-----HhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCC
Confidence 4556666666665544211 35778999999998876665442 2 45699999996
No 314
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=54.50 E-value=57 Score=22.46 Aligned_cols=47 Identities=30% Similarity=0.337 Sum_probs=28.9
Q ss_pred HHHHHHHhhcCCCCCCCCeEEEEccccCHHHH--HHHHcCCCeEEEEeC
Q 030031 85 VKALRLDVQNGNISFSGKRVLELGCGHGLPGI--FACLEGAAVIHFQEF 131 (184)
Q Consensus 85 a~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi--~aa~~ga~~V~~tD~ 131 (184)
.+++.+........+++++++-+|||.---++ .+...+..+|+..|.
T Consensus 7 ~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 7 VALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 34444443334456889999999997443333 223344568888887
No 315
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=54.24 E-value=19 Score=33.18 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=21.9
Q ss_pred ccCHHHH----HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 110 GHGLPGI----FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 110 GtGl~gi----~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
|+|++|+ .++..|+ .|+++|++++-++.+
T Consensus 7 GtGYVGLv~g~~lA~~GH-eVv~vDid~~KV~~l 39 (414)
T COG1004 7 GTGYVGLVTGACLAELGH-EVVCVDIDESKVELL 39 (414)
T ss_pred CCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHH
Confidence 6677765 3455676 799999999888765
No 316
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=53.43 E-value=26 Score=30.55 Aligned_cols=43 Identities=23% Similarity=0.407 Sum_probs=28.2
Q ss_pred CCCCCeEEEEccc-cCHHHHHHHH-cCCCeEEEEeCCHHHHHHhh
Q 030031 98 SFSGKRVLELGCG-HGLPGIFACL-EGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 98 ~~~gkrVLELGcG-tGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~ 140 (184)
...|.+||=.|+| .|+..+.+++ .|+++|+++|.+++-++.+.
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~ 233 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAR 233 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH
Confidence 3467888888864 2333333333 57767999999987776553
No 317
>PRK08223 hypothetical protein; Validated
Probab=53.41 E-value=11 Score=32.91 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=29.0
Q ss_pred CCCCCeEEEEccc-cCHH-HHHHHHcCCCeEEEEeCCH
Q 030031 98 SFSGKRVLELGCG-HGLP-GIFACLEGAAVIHFQEFNA 133 (184)
Q Consensus 98 ~~~gkrVLELGcG-tGl~-gi~aa~~ga~~V~~tD~s~ 133 (184)
.++..+||=+||| .|.. ...+++.|..+++.+|.+.
T Consensus 24 kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 24 RLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4678899999999 3443 4578889999999999984
No 318
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=52.85 E-value=34 Score=30.72 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=38.5
Q ss_pred cccccHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 030031 76 KLWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRY 138 (184)
Q Consensus 76 ~~We~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~ 138 (184)
.+||....=...|.. -.|.+|.-+|+|..-+--++++..+ +|.++|+|+.-|..
T Consensus 47 qiwEDp~Vdmeam~~--------g~ghrivtigSGGcn~L~ylsr~Pa-~id~VDlN~ahiAl 100 (414)
T COG5379 47 QIWEDPSVDMEAMQL--------GIGHRIVTIGSGGCNMLAYLSRAPA-RIDVVDLNPAHIAL 100 (414)
T ss_pred cccCCccccHHHHhc--------CCCcEEEEecCCcchHHHHhhcCCc-eeEEEeCCHHHHHH
Confidence 478877544444442 4577999999997755556666666 79999999987763
No 319
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=52.24 E-value=13 Score=31.29 Aligned_cols=35 Identities=23% Similarity=0.488 Sum_probs=27.1
Q ss_pred CCCCeEEEEccc-cCHH-HHHHHHcCCCeEEEEeCCH
Q 030031 99 FSGKRVLELGCG-HGLP-GIFACLEGAAVIHFQEFNA 133 (184)
Q Consensus 99 ~~gkrVLELGcG-tGl~-gi~aa~~ga~~V~~tD~s~ 133 (184)
+++++|+=+||| .|.. ...+++.|..+++.+|.+.
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 567899999998 3433 3467778999999999973
No 320
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=51.66 E-value=16 Score=27.46 Aligned_cols=41 Identities=24% Similarity=0.408 Sum_probs=25.7
Q ss_pred eEEEEccc-cCH-HHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhC
Q 030031 103 RVLELGCG-HGL-PGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANV 148 (184)
Q Consensus 103 rVLELGcG-tGl-~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~ 148 (184)
+|+=+||| .|. +...+++.|..+++.+|.+. +...|+.++.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~-----v~~~nl~r~~ 43 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT-----VELSNLNRQF 43 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC-----cCcchhhccc
Confidence 46778886 332 22356677888999999873 2335555443
No 321
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=51.29 E-value=73 Score=23.76 Aligned_cols=41 Identities=34% Similarity=0.337 Sum_probs=27.8
Q ss_pred CCCCCCeEEEEccccCHHHHHH----HHcCCCeEEEEeCCHHHHHHh
Q 030031 97 ISFSGKRVLELGCGHGLPGIFA----CLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 97 ~~~~gkrVLELGcGtGl~gi~a----a~~ga~~V~~tD~s~~~l~~l 139 (184)
...++++|+=+||| ..|... +..|...|+..|.+++-.+.+
T Consensus 15 ~~~~~~~i~iiG~G--~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~ 59 (155)
T cd01065 15 IELKGKKVLILGAG--GAARAVAYALAELGAAKIVIVNRTLEKAKAL 59 (155)
T ss_pred CCCCCCEEEEECCc--HHHHHHHHHHHHCCCCEEEEEcCCHHHHHHH
Confidence 34678999999986 444322 334445899999997766544
No 322
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=50.59 E-value=31 Score=29.72 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=29.3
Q ss_pred CCCCCeEEEEcccc-CHHHHHHHH-cCCCeEEEEeCCHHHHHHhh
Q 030031 98 SFSGKRVLELGCGH-GLPGIFACL-EGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 98 ~~~gkrVLELGcGt-Gl~gi~aa~-~ga~~V~~tD~s~~~l~~l~ 140 (184)
..+|.+||=+|||. |+..+.+++ .|+ +|+++|.+++-++.+.
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~ 207 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMK 207 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHH
Confidence 34688999999842 444444444 577 6999999988877554
No 323
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=49.87 E-value=15 Score=30.95 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=27.3
Q ss_pred CCCCeEEEEccc-cCHHH-HHHHHcCCCeEEEEeCCH
Q 030031 99 FSGKRVLELGCG-HGLPG-IFACLEGAAVIHFQEFNA 133 (184)
Q Consensus 99 ~~gkrVLELGcG-tGl~g-i~aa~~ga~~V~~tD~s~ 133 (184)
+++++|+=+||| .|... ..+++.|..+++.+|.+.
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 567899999998 44333 367788999999999974
No 324
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=49.29 E-value=22 Score=31.61 Aligned_cols=66 Identities=18% Similarity=0.361 Sum_probs=47.3
Q ss_pred CccCCCccccccHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcC-CCeEEEEeCCHHHHHHhh
Q 030031 69 GVYEGGLKLWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEG-AAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 69 ~~ye~G~~~We~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~g-a~~V~~tD~s~~~l~~l~ 140 (184)
..|+.|+.+=+++..-+.+|.+ .-++.||+|+=+| ---+.|+.+++-| +++|..+|+++..++.+.
T Consensus 126 ~~yDQgfvTpEttv~Rv~lm~~-----RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~ 192 (354)
T COG1568 126 HQYDQGFVTPETTVSRVALMYS-----RGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIE 192 (354)
T ss_pred hhcccccccccceeeeeeeecc-----ccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHH
Confidence 4455566555555544444443 3368899999999 7779999888765 578999999998887554
No 325
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=48.68 E-value=15 Score=32.53 Aligned_cols=40 Identities=20% Similarity=0.437 Sum_probs=24.8
Q ss_pred CCCeEEEEccccCHHHHHHHHc----------CC-------CeEEEEeCCHHHHHHh
Q 030031 100 SGKRVLELGCGHGLPGIFACLE----------GA-------AVIHFQEFNAEVLRYL 139 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~----------ga-------~~V~~tD~s~~~l~~l 139 (184)
+.-+|+|+||.+|-.++.+... .. -+|++.|+..+-...+
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~l 72 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTL 72 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHH
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHH
Confidence 3458999999999888755431 11 2789999987665544
No 326
>PLN02827 Alcohol dehydrogenase-like
Probab=47.95 E-value=37 Score=29.94 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=27.7
Q ss_pred CCCCCeEEEEccccCHHHHHH---HH-cCCCeEEEEeCCHHHHHHh
Q 030031 98 SFSGKRVLELGCGHGLPGIFA---CL-EGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~a---a~-~ga~~V~~tD~s~~~l~~l 139 (184)
..+|.+||=.|+ |.+|+++ ++ .|+..|+++|.+++-++.+
T Consensus 191 ~~~g~~VlV~G~--G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a 234 (378)
T PLN02827 191 VSKGSSVVIFGL--GTVGLSVAQGAKLRGASQIIGVDINPEKAEKA 234 (378)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH
Confidence 356889999986 4455433 33 5776799999887766654
No 327
>PRK07411 hypothetical protein; Validated
Probab=47.72 E-value=12 Score=33.81 Aligned_cols=45 Identities=22% Similarity=0.370 Sum_probs=31.9
Q ss_pred CCCCeEEEEccc-cCH-HHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhC
Q 030031 99 FSGKRVLELGCG-HGL-PGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANV 148 (184)
Q Consensus 99 ~~gkrVLELGcG-tGl-~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~ 148 (184)
++..+||=+||| .|. ....+++.|..+++.+|.+. +...|+.+|.
T Consensus 36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~-----ve~sNL~RQ~ 82 (390)
T PRK07411 36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV-----VDSSNLQRQV 82 (390)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE-----ecccccCcCc
Confidence 567899999999 333 33467788999999999973 2345555544
No 328
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=47.03 E-value=30 Score=29.38 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=26.1
Q ss_pred eEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHh
Q 030031 103 RVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 103 rVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
+|||.-||-|.=++.++..|. +|++.+-||-+-..+
T Consensus 78 ~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll 113 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALL 113 (234)
T ss_dssp -EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHH
T ss_pred EEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHH
Confidence 899999999999998888887 799999998765544
No 329
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=46.42 E-value=15 Score=32.71 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=27.8
Q ss_pred CCCCCeEEEEcccc-CH-HHHHHHHcCCCeEEEEeCCH
Q 030031 98 SFSGKRVLELGCGH-GL-PGIFACLEGAAVIHFQEFNA 133 (184)
Q Consensus 98 ~~~gkrVLELGcGt-Gl-~gi~aa~~ga~~V~~tD~s~ 133 (184)
.+++++||=+|||. |. ....+++.|..+++.+|.+.
T Consensus 25 ~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 25 SLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 36778999999983 33 33467788999999999983
No 330
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=46.11 E-value=44 Score=29.04 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=27.3
Q ss_pred CCCCeEEEEccccCHHHHHH---HH-cCCCeEEEEeCCHHHHHHh
Q 030031 99 FSGKRVLELGCGHGLPGIFA---CL-EGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~a---a~-~ga~~V~~tD~s~~~l~~l 139 (184)
.+|.+||=+|+ |.+|+.+ ++ .|+.+|+++|.+++-++.+
T Consensus 185 ~~g~~VlV~G~--G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~ 227 (368)
T cd08300 185 EPGSTVAVFGL--GAVGLAVIQGAKAAGASRIIGIDINPDKFELA 227 (368)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence 46888998886 4555443 33 5776799999988776654
No 331
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=45.86 E-value=87 Score=26.83 Aligned_cols=35 Identities=29% Similarity=0.523 Sum_probs=25.7
Q ss_pred CCCCCeEEEEccccCHH-HH--HHHHcCCCeEEEEeCCH
Q 030031 98 SFSGKRVLELGCGHGLP-GI--FACLEGAAVIHFQEFNA 133 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~-gi--~aa~~ga~~V~~tD~s~ 133 (184)
..+++++|=+|+| |.- ++ .++..|+++|+..+.+.
T Consensus 123 ~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 123 DVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 4678999999997 432 22 23467887899999885
No 332
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=45.65 E-value=45 Score=28.34 Aligned_cols=39 Identities=23% Similarity=0.160 Sum_probs=27.0
Q ss_pred CCCCeEEEEccccCHHHHH---HH-HcCCCeEEEEeCCHHHHHHh
Q 030031 99 FSGKRVLELGCGHGLPGIF---AC-LEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~---aa-~~ga~~V~~tD~s~~~l~~l 139 (184)
.+|.+||=+|+ |.+|++ ++ ..|+++|+++|.+++-++.+
T Consensus 162 ~~g~~vlV~G~--G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~ 204 (339)
T cd08239 162 SGRDTVLVVGA--GPVGLGALMLARALGAEDVIGVDPSPERLELA 204 (339)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 45889988876 445543 33 35775599999988776654
No 333
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=45.16 E-value=23 Score=26.48 Aligned_cols=43 Identities=23% Similarity=0.251 Sum_probs=29.3
Q ss_pred CCeEEEEccc-cCHHH-HHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhC
Q 030031 101 GKRVLELGCG-HGLPG-IFACLEGAAVIHFQEFNAEVLRYLTIPNVIANV 148 (184)
Q Consensus 101 gkrVLELGcG-tGl~g-i~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~ 148 (184)
.++|+=+||| .|..- ..+++.|..+++.+|.+. +...|+.++.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~-----v~~~nl~r~~ 46 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI-----VEPSNLNRQF 46 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB-----B-GGGCCTCT
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc-----eeeccccccc
Confidence 5689999997 44333 366778999999999973 4456666653
No 334
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=45.14 E-value=28 Score=25.13 Aligned_cols=30 Identities=27% Similarity=0.240 Sum_probs=23.3
Q ss_pred ccCHHHHHHHH-cCCCeEEEEeCCHHHHHHhh
Q 030031 110 GHGLPGIFACL-EGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 110 GtGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~ 140 (184)
|.|+..+.+++ .| .+|+++|.+++-++.++
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~ 31 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAK 31 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHH
Confidence 46788887666 57 68999999998877665
No 335
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=44.58 E-value=27 Score=28.49 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=26.8
Q ss_pred CCCCCeEEEEcccc-C-HHHHHHHHcCCCeEEEEeCC
Q 030031 98 SFSGKRVLELGCGH-G-LPGIFACLEGAAVIHFQEFN 132 (184)
Q Consensus 98 ~~~gkrVLELGcGt-G-l~gi~aa~~ga~~V~~tD~s 132 (184)
.++.++|+=+|||. | -+...+++.|..+++.+|.+
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 35778999999983 2 23346677898889999998
No 336
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=44.30 E-value=16 Score=33.02 Aligned_cols=46 Identities=24% Similarity=0.425 Sum_probs=32.2
Q ss_pred CCCCeEEEEcccc-C-HHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCC
Q 030031 99 FSGKRVLELGCGH-G-LPGIFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVP 149 (184)
Q Consensus 99 ~~gkrVLELGcGt-G-l~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~ 149 (184)
++..+||=+|||. | -+...+++.|..+++.+|.+. +...|+.++..
T Consensus 40 L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~-----ve~sNL~Rq~l 87 (392)
T PRK07878 40 LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV-----VDESNLQRQVI 87 (392)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE-----ecCcccccccc
Confidence 4677999999993 3 233467778999999999873 33455555543
No 337
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=44.09 E-value=83 Score=26.22 Aligned_cols=43 Identities=33% Similarity=0.281 Sum_probs=37.1
Q ss_pred CCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 97 ISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 97 ~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
....+..|||-=+|+|..++.+...|- ..++.|++++-++...
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~ 261 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVAL 261 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHH
Confidence 457889999999999999999998876 6899999998877544
No 338
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=43.98 E-value=52 Score=28.61 Aligned_cols=40 Identities=25% Similarity=0.327 Sum_probs=24.8
Q ss_pred CCeEEEEccc-cCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhh
Q 030031 101 GKRVLELGCG-HGLPGIFACLE-G-AAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 101 gkrVLELGcG-tGl~gi~aa~~-g-a~~V~~tD~s~~~l~~l~ 140 (184)
.++|+=+||| --+.++.+++. + ...|+++|+++++++...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~ 163 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELAR 163 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHH
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Confidence 4699999999 66777777753 3 237999999999988664
No 339
>PRK06153 hypothetical protein; Provisional
Probab=43.98 E-value=24 Score=32.31 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=28.2
Q ss_pred CCCCeEEEEccc-cCH-HHHHHHHcCCCeEEEEeCC
Q 030031 99 FSGKRVLELGCG-HGL-PGIFACLEGAAVIHFQEFN 132 (184)
Q Consensus 99 ~~gkrVLELGcG-tGl-~gi~aa~~ga~~V~~tD~s 132 (184)
+++++|+=+||| +|- +...+++.|..+++.+|.+
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 577899999998 554 4457888999999999997
No 340
>PRK09242 tropinone reductase; Provisional
Probab=43.07 E-value=1e+02 Score=24.85 Aligned_cols=47 Identities=17% Similarity=0.121 Sum_probs=32.3
Q ss_pred CCCCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHHhhHHHHH
Q 030031 97 ISFSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRYLTIPNVI 145 (184)
Q Consensus 97 ~~~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~ 145 (184)
..+++|++|=.|++.|+-.. .++..|+ +|++++.+++.++.+. .++.
T Consensus 5 ~~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~-~~l~ 54 (257)
T PRK09242 5 WRLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQAR-DELA 54 (257)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH-HHHH
Confidence 34678999999997665443 3344677 7999999887766543 4443
No 341
>PLN02780 ketoreductase/ oxidoreductase
Probab=42.51 E-value=1.6e+02 Score=25.37 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=32.0
Q ss_pred CCCeEEEEccccCHHH---HHHHHcCCCeEEEEeCCHHHHHHhhHHHHH
Q 030031 100 SGKRVLELGCGHGLPG---IFACLEGAAVIHFQEFNAEVLRYLTIPNVI 145 (184)
Q Consensus 100 ~gkrVLELGcGtGl~g---i~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~ 145 (184)
.|+++|=.|++.|+-. ..+++.|+ +|+.++.+++-++.+. ..+.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~-~~l~ 98 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVS-DSIQ 98 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHH-HHHH
Confidence 5889999998877633 34556787 6999999988877654 4444
No 342
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=42.34 E-value=52 Score=27.78 Aligned_cols=40 Identities=35% Similarity=0.387 Sum_probs=27.4
Q ss_pred CCCeEEEEcccc-CHHHHHHHH-cCCCeEEEEeCCHHHHHHh
Q 030031 100 SGKRVLELGCGH-GLPGIFACL-EGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 100 ~gkrVLELGcGt-Gl~gi~aa~-~ga~~V~~tD~s~~~l~~l 139 (184)
++.+||-.|||. |...+.+++ .|+.+|++++.+++..+.+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~ 206 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVA 206 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH
Confidence 788999988753 334443443 5765799999988777643
No 343
>PRK08339 short chain dehydrogenase; Provisional
Probab=42.31 E-value=94 Score=25.59 Aligned_cols=42 Identities=21% Similarity=0.182 Sum_probs=30.8
Q ss_pred CCCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 98 SFSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
.+++|++|=.|++.|+-.- .++..|+ +|+++|.+++-++.+.
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~ 49 (263)
T PRK08339 5 DLSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAR 49 (263)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 4689999999998876442 4445687 7999999877665443
No 344
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=42.06 E-value=52 Score=27.50 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=29.0
Q ss_pred CCCCCeEEEEccc-cCHHHHHHHH-cCCCeEEEEeCCHHHHHHhh
Q 030031 98 SFSGKRVLELGCG-HGLPGIFACL-EGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 98 ~~~gkrVLELGcG-tGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~ 140 (184)
...+.+||..||| .|...+.+++ .|. +|++++.+++..+.+.
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~ 206 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAK 206 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHH
Confidence 3457788888765 3555555554 565 6999999988877654
No 345
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=41.98 E-value=53 Score=28.47 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=27.8
Q ss_pred CCCCCeEEEEccccCHHHHHH---H-HcCCCeEEEEeCCHHHHHHh
Q 030031 98 SFSGKRVLELGCGHGLPGIFA---C-LEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~a---a-~~ga~~V~~tD~s~~~l~~l 139 (184)
..+|.+||=.|+ |.+|+++ + ..|+++|+++|.+++-++.+
T Consensus 185 ~~~g~~VlV~G~--g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~ 228 (369)
T cd08301 185 VKKGSTVAIFGL--GAVGLAVAEGARIRGASRIIGVDLNPSKFEQA 228 (369)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 356888988875 5566543 3 35776799999887776654
No 346
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=41.24 E-value=1.1e+02 Score=24.64 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=28.3
Q ss_pred CCCCCeEEEEccccCHHHHHH----HHcCCCeEEEEeCCHHHHHHh
Q 030031 98 SFSGKRVLELGCGHGLPGIFA----CLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~a----a~~ga~~V~~tD~s~~~l~~l 139 (184)
.+++|+||=.|+. |-+|..+ +..|+ +|+++|.+++.++.+
T Consensus 7 ~~~~k~vlItGa~-g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~ 50 (255)
T PRK07523 7 DLTGRRALVTGSS-QGIGYALAEGLAQAGA-EVILNGRDPAKLAAA 50 (255)
T ss_pred CCCCCEEEEECCc-chHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 4789999999964 4445443 34577 799999987766543
No 347
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=40.97 E-value=84 Score=25.59 Aligned_cols=40 Identities=30% Similarity=0.269 Sum_probs=27.9
Q ss_pred CCCCeEEEEccccCHHH---HHHHHcCCCeEEEEeCCHHHHHHh
Q 030031 99 FSGKRVLELGCGHGLPG---IFACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~g---i~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
++++++|=.|++.|+-. ..++..|+ +|+++|.+.+.++.+
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~l 45 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKSAAGLQEL 45 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 57889999998766433 23345687 799999987666544
No 348
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=40.18 E-value=86 Score=25.98 Aligned_cols=51 Identities=16% Similarity=0.039 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHH--HHHcCCC--eEEEEeCC
Q 030031 81 SIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIF--ACLEGAA--VIHFQEFN 132 (184)
Q Consensus 81 s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~--aa~~ga~--~V~~tD~s 132 (184)
+..++-++.... .....+++++|+=+|+|..-.++. +...|.+ +|+.+|.+
T Consensus 6 ~v~lAG~~~al~-~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 6 IVTLAGLLNALK-LVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred HHHHHHHHHHHH-HhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 445555555432 223468899999999998777763 4456887 89999998
No 349
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=39.97 E-value=30 Score=30.67 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=26.7
Q ss_pred CCCCCeEEEEccc-cCH-HHHHHHHcCCCeEEEEeCC
Q 030031 98 SFSGKRVLELGCG-HGL-PGIFACLEGAAVIHFQEFN 132 (184)
Q Consensus 98 ~~~gkrVLELGcG-tGl-~gi~aa~~ga~~V~~tD~s 132 (184)
.++.++||=+||| .|. +...+++.|..+++.+|.+
T Consensus 21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3577899999998 232 3346677898899999997
No 350
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=39.81 E-value=62 Score=28.10 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=27.5
Q ss_pred CCCCCeEEEEccccCHHHHH---HH-HcCCCeEEEEeCCHHHHHHh
Q 030031 98 SFSGKRVLELGCGHGLPGIF---AC-LEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~---aa-~~ga~~V~~tD~s~~~l~~l 139 (184)
..+|.+||=.|+ |.+|+. ++ ..|+.+|+++|.+++-++.+
T Consensus 182 ~~~g~~vlV~G~--g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~ 225 (365)
T cd08277 182 VEPGSTVAVFGL--GAVGLSAIMGAKIAGASRIIGVDINEDKFEKA 225 (365)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence 356888888876 455543 33 35776799999887776654
No 351
>PRK06949 short chain dehydrogenase; Provisional
Probab=39.72 E-value=98 Score=24.84 Aligned_cols=41 Identities=27% Similarity=0.277 Sum_probs=28.2
Q ss_pred CCCCCCeEEEEccccCHHHHH----HHHcCCCeEEEEeCCHHHHHHh
Q 030031 97 ISFSGKRVLELGCGHGLPGIF----ACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 97 ~~~~gkrVLELGcGtGl~gi~----aa~~ga~~V~~tD~s~~~l~~l 139 (184)
..+++++||=.|++. .+|.. +++.|+ +|++++.+++.++.+
T Consensus 5 ~~~~~k~ilItGasg-~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~ 49 (258)
T PRK06949 5 INLEGKVALVTGASS-GLGARFAQVLAQAGA-KVVLASRRVERLKEL 49 (258)
T ss_pred cCCCCCEEEEECCCc-HHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 357789999999544 44443 334577 799999988776544
No 352
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=39.56 E-value=37 Score=28.92 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=26.6
Q ss_pred CeEEEEccccCHHHHHHHHc-CCCeEEEEeCCHHHHHHh
Q 030031 102 KRVLELGCGHGLPGIFACLE-GAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 102 krVLELGcGtGl~gi~aa~~-ga~~V~~tD~s~~~l~~l 139 (184)
-...|+|||-|-+.+.++-. ....|.|.++-..+-+.+
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYV 100 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYV 100 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHH
Confidence 35899999999888777643 445677777765554444
No 353
>PRK09072 short chain dehydrogenase; Provisional
Probab=39.56 E-value=95 Score=25.23 Aligned_cols=40 Identities=33% Similarity=0.335 Sum_probs=28.8
Q ss_pred CCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 99 FSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
.+++++|=.|++.|+-.. .++..|+ +|++++.+++-++.+
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~ 45 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEAL 45 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence 467889999988766442 3445687 799999988766544
No 354
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=39.51 E-value=39 Score=29.16 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=27.7
Q ss_pred CCCCCeEEEEccc-cCHH-HHHHHHcCCCeEEEEeCCH
Q 030031 98 SFSGKRVLELGCG-HGLP-GIFACLEGAAVIHFQEFNA 133 (184)
Q Consensus 98 ~~~gkrVLELGcG-tGl~-gi~aa~~ga~~V~~tD~s~ 133 (184)
.+++++|+=+||| .|.. ...+++.|..+++.+|.+.
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 4678899999999 3433 3467788988999999874
No 355
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=38.96 E-value=1e+02 Score=26.53 Aligned_cols=42 Identities=12% Similarity=0.182 Sum_probs=31.6
Q ss_pred CCCCCeEEEEccccCHHHHH--HHHcCCCeEEEEeCCHHHHHHh
Q 030031 98 SFSGKRVLELGCGHGLPGIF--ACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~--aa~~ga~~V~~tD~s~~~l~~l 139 (184)
..++++||=||||..--++. ++..|.++|+..+.+.+-.+.+
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~L 167 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQAL 167 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHH
Confidence 46789999999997666654 3457888999999987655544
No 356
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=38.87 E-value=64 Score=27.55 Aligned_cols=39 Identities=28% Similarity=0.453 Sum_probs=27.0
Q ss_pred CCCCeEEEEccccCHHHHH---HH-HcCCCeEEEEeCCHHHHHHh
Q 030031 99 FSGKRVLELGCGHGLPGIF---AC-LEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~---aa-~~ga~~V~~tD~s~~~l~~l 139 (184)
.++++||=+||| .+|.. ++ ..|+..|+++|.+++-++.+
T Consensus 159 ~~g~~vlV~G~g--~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~ 201 (347)
T PRK10309 159 CEGKNVIIIGAG--TIGLLAIQCAVALGAKSVTAIDINSEKLALA 201 (347)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHHcCCCeEEEECCCHHHHHHH
Confidence 467899999874 35543 33 36776688999988777654
No 357
>PRK05867 short chain dehydrogenase; Provisional
Probab=38.78 E-value=89 Score=25.24 Aligned_cols=41 Identities=24% Similarity=0.307 Sum_probs=29.8
Q ss_pred CCCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 98 SFSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
.+++|++|=.|++.|+-.- .+++.|+ +|++++.+++.++.+
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~ 49 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKL 49 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence 4678999999987765432 3345687 799999987766654
No 358
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=38.58 E-value=1.1e+02 Score=26.20 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=31.6
Q ss_pred CCCCCeEEEEccccCHHHH--HHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 98 SFSGKRVLELGCGHGLPGI--FACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi--~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
..++++|+=+|||.---++ .++..|+++|+.+|.+.+-.+.+.
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la 168 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALA 168 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 4678999999999644443 344578889999999977665543
No 359
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=38.45 E-value=55 Score=29.23 Aligned_cols=38 Identities=24% Similarity=0.491 Sum_probs=29.5
Q ss_pred CeEEEEccc---cCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 102 KRVLELGCG---HGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 102 krVLELGcG---tGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
++|+=+|+| .|.++-.+.+.|. .|+++|..+.+++.+.
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~-~V~~vd~~~~~v~aL~ 41 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGF-EVTFVDVNQELIDALN 41 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCC-eEEEEECCHHHHHHHh
Confidence 367888987 3566777777776 7999999988887765
No 360
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=38.39 E-value=40 Score=27.79 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=26.9
Q ss_pred CCCCeEEEEcccc-C-HHHHHHHHcCCCeEEEEeCCH
Q 030031 99 FSGKRVLELGCGH-G-LPGIFACLEGAAVIHFQEFNA 133 (184)
Q Consensus 99 ~~gkrVLELGcGt-G-l~gi~aa~~ga~~V~~tD~s~ 133 (184)
++.++|+=+|||. | -+...+++.|..+++.+|.+.
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 5678999999983 3 333467778999999999873
No 361
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.78 E-value=60 Score=29.97 Aligned_cols=39 Identities=26% Similarity=0.261 Sum_probs=27.6
Q ss_pred CCCCeEEEEccc-cCHHHHH-HHHcCCCeEEEEeCCHHHHHH
Q 030031 99 FSGKRVLELGCG-HGLPGIF-ACLEGAAVIHFQEFNAEVLRY 138 (184)
Q Consensus 99 ~~gkrVLELGcG-tGl~gi~-aa~~ga~~V~~tD~s~~~l~~ 138 (184)
..+++|+=+|.| +|+..+. +...|+ +|+++|.++..++.
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~~~~ 50 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDALRP 50 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHH
Confidence 468899999988 5555543 345676 79999987665543
No 362
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=37.32 E-value=57 Score=32.00 Aligned_cols=37 Identities=16% Similarity=-0.014 Sum_probs=28.7
Q ss_pred CCCCCCeEEEEccccCHHHHHHHHc-C-CCeEEEEeCCH
Q 030031 97 ISFSGKRVLELGCGHGLPGIFACLE-G-AAVIHFQEFNA 133 (184)
Q Consensus 97 ~~~~gkrVLELGcGtGl~gi~aa~~-g-a~~V~~tD~s~ 133 (184)
+.-++..||||||.-|-+...+++. + .+-|+|+|+-|
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 3456789999999999998877763 2 24789999865
No 363
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=37.22 E-value=75 Score=27.15 Aligned_cols=42 Identities=21% Similarity=0.186 Sum_probs=27.1
Q ss_pred CCCCCeEEEEccc-cCHHHHHHHH-cCCCeEEEEeCCHHHHHHh
Q 030031 98 SFSGKRVLELGCG-HGLPGIFACL-EGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 98 ~~~gkrVLELGcG-tGl~gi~aa~-~ga~~V~~tD~s~~~l~~l 139 (184)
..++++||=.|+| .|...+.+++ .|+..|+.+|.+++-++.+
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~ 207 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELA 207 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence 3467889988764 2333333343 5776799999987666543
No 364
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=37.05 E-value=93 Score=26.08 Aligned_cols=42 Identities=29% Similarity=0.285 Sum_probs=32.3
Q ss_pred CCCCCeEEEEccccCHHH---HHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 98 SFSGKRVLELGCGHGLPG---IFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~g---i~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
.+.|++||--|+|.|+-- ..+++.|| +|+++--+++.+..+-
T Consensus 4 ~laG~~vlvTgagaGIG~~~v~~La~aGA-~ViAvaR~~a~L~sLV 48 (245)
T KOG1207|consen 4 SLAGVIVLVTGAGAGIGKEIVLSLAKAGA-QVIAVARNEANLLSLV 48 (245)
T ss_pred cccceEEEeecccccccHHHHHHHHhcCC-EEEEEecCHHHHHHHH
Confidence 467899999999888643 45667788 8999999887776553
No 365
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=37.02 E-value=1.3e+02 Score=26.04 Aligned_cols=37 Identities=32% Similarity=0.440 Sum_probs=26.2
Q ss_pred CCCCeEEEEccccCHHHHHH----HHcCCCeEEEEeCCHHHHH
Q 030031 99 FSGKRVLELGCGHGLPGIFA----CLEGAAVIHFQEFNAEVLR 137 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~a----a~~ga~~V~~tD~s~~~l~ 137 (184)
+.+++|+=+||| -+|..+ ...|+.+|+.+|.+++-.+
T Consensus 176 l~~~~V~ViGaG--~iG~~~a~~L~~~g~~~V~v~~r~~~ra~ 216 (311)
T cd05213 176 LKGKKVLVIGAG--EMGELAAKHLAAKGVAEITIANRTYERAE 216 (311)
T ss_pred ccCCEEEEECcH--HHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 578999999885 444332 2347778999999976543
No 366
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=36.67 E-value=73 Score=22.61 Aligned_cols=34 Identities=21% Similarity=0.123 Sum_probs=23.3
Q ss_pred cccCHHHHHHHH---cCCCeEEEEeCCHHHHHHhhHH
Q 030031 109 CGHGLPGIFACL---EGAAVIHFQEFNAEVLRYLTIP 142 (184)
Q Consensus 109 cGtGl~gi~aa~---~ga~~V~~tD~s~~~l~~l~~~ 142 (184)
||.|-.|..+++ .+..+|+.+|.+++.++.+...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~ 40 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE 40 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc
Confidence 677777765543 2334899999999988876633
No 367
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=35.99 E-value=86 Score=28.43 Aligned_cols=40 Identities=28% Similarity=0.324 Sum_probs=27.6
Q ss_pred CCCCCeEEEEccc-cCHHHH-HHHHcCCCeEEEEeCCHHHHH
Q 030031 98 SFSGKRVLELGCG-HGLPGI-FACLEGAAVIHFQEFNAEVLR 137 (184)
Q Consensus 98 ~~~gkrVLELGcG-tGl~gi-~aa~~ga~~V~~tD~s~~~l~ 137 (184)
..++++|+=+||| .|...+ .+...|+.+|+.++.+++-.+
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~ 220 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAE 220 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHH
Confidence 3678999999886 233322 233467778999999976654
No 368
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=35.71 E-value=73 Score=30.17 Aligned_cols=41 Identities=29% Similarity=0.384 Sum_probs=30.3
Q ss_pred CCCCeEEEEccc-cCHHHHHHHH-cCCCeEEEEeCCHHHHHHhh
Q 030031 99 FSGKRVLELGCG-HGLPGIFACL-EGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 99 ~~gkrVLELGcG-tGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~ 140 (184)
..+.+|+=+||| .|+..+.+++ +|+ .|++.|.+++.++.+.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~ 204 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQ 204 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 356799999998 4566664444 687 6999999998776554
No 369
>PRK07035 short chain dehydrogenase; Provisional
Probab=35.54 E-value=1.5e+02 Score=23.82 Aligned_cols=41 Identities=17% Similarity=0.260 Sum_probs=30.1
Q ss_pred CCCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 98 SFSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
.+++++||=.|++.|+-.- .+++.|+ +|+++|.+++-++.+
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~ 48 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAV 48 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 4678899999988776553 3445687 799999987666544
No 370
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=34.98 E-value=47 Score=29.39 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=27.4
Q ss_pred CCCCCeEEEEcccc-CH-HHHHHHHcCCCeEEEEeCCH
Q 030031 98 SFSGKRVLELGCGH-GL-PGIFACLEGAAVIHFQEFNA 133 (184)
Q Consensus 98 ~~~gkrVLELGcGt-Gl-~gi~aa~~ga~~V~~tD~s~ 133 (184)
.+++++||=+|||. |. +...+++.|..+++.+|.+.
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 46788999999983 32 33466778988999999974
No 371
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=34.76 E-value=1.1e+02 Score=25.99 Aligned_cols=57 Identities=18% Similarity=0.196 Sum_probs=39.9
Q ss_pred CCccccccHHHHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHH----cC-CCeEEEEeCCHH
Q 030031 73 GGLKLWEGSIDLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACL----EG-AAVIHFQEFNAE 134 (184)
Q Consensus 73 ~G~~~We~s~~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~----~g-a~~V~~tD~s~~ 134 (184)
.|..+|..-.++..|-.-.. ..+...|+|.|.-.|--.++.|. .| ..+|+++|++-.
T Consensus 47 mG~p~~k~p~D~~~yQellw-----~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~ 108 (237)
T COG3510 47 MGIPCIKSPSDMWNYQELLW-----ELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIK 108 (237)
T ss_pred ecccccCCHHHHHHHHHHHH-----hcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccC
Confidence 46678888888877754322 35667899999998877765553 35 137999998743
No 372
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=34.55 E-value=1.4e+02 Score=24.49 Aligned_cols=39 Identities=21% Similarity=0.184 Sum_probs=27.0
Q ss_pred CCCCCCCeEEEEccccC-HHHH----HHHHcCCCeEEEEeCCHHH
Q 030031 96 NISFSGKRVLELGCGHG-LPGI----FACLEGAAVIHFQEFNAEV 135 (184)
Q Consensus 96 ~~~~~gkrVLELGcGtG-l~gi----~aa~~ga~~V~~tD~s~~~ 135 (184)
...+++|.+|=.|+++| -+|. .+++.|+ +|+.+|.+.+.
T Consensus 5 ~~~~~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~ 48 (258)
T PRK07533 5 LLPLAGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKA 48 (258)
T ss_pred ccccCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhh
Confidence 34578999999998752 4443 3445687 68888887543
No 373
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=34.33 E-value=71 Score=28.39 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=30.0
Q ss_pred CCCCeEEEEcc-c-cCHHHHHHHHc---CCCeEEEEeCCHHHHHHhh
Q 030031 99 FSGKRVLELGC-G-HGLPGIFACLE---GAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 99 ~~gkrVLELGc-G-tGl~gi~aa~~---ga~~V~~tD~s~~~l~~l~ 140 (184)
..|.+||=+|+ | .|+..+.+++. |+.+|+++|.+++-++.+.
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~ 220 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQ 220 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHH
Confidence 45778888873 3 66666666664 4567999999988877654
No 374
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=34.23 E-value=1.2e+02 Score=26.18 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=29.5
Q ss_pred CCCCCCCeEEEEccccCHHHHHH--HHcCCCeEEEEeCCH
Q 030031 96 NISFSGKRVLELGCGHGLPGIFA--CLEGAAVIHFQEFNA 133 (184)
Q Consensus 96 ~~~~~gkrVLELGcGtGl~gi~a--a~~ga~~V~~tD~s~ 133 (184)
....++++||=||||.-.-++.+ +..|+++|+..+.++
T Consensus 119 ~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 119 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred CCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 34578899999999976666543 457888999999984
No 375
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=34.17 E-value=52 Score=27.04 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=27.2
Q ss_pred CCCCCeEEEEcccc-CH-HHHHHHHcCCCeEEEEeCC
Q 030031 98 SFSGKRVLELGCGH-GL-PGIFACLEGAAVIHFQEFN 132 (184)
Q Consensus 98 ~~~gkrVLELGcGt-Gl-~gi~aa~~ga~~V~~tD~s 132 (184)
.++.++|+=+|||. |. +...+++.|..+++.+|.+
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 36778999999983 33 3346777899899999998
No 376
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=33.54 E-value=61 Score=30.90 Aligned_cols=35 Identities=26% Similarity=0.444 Sum_probs=25.7
Q ss_pred CCCCeEEEEcccc-CHHHH-HHHHcCCCeEEEEeCCH
Q 030031 99 FSGKRVLELGCGH-GLPGI-FACLEGAAVIHFQEFNA 133 (184)
Q Consensus 99 ~~gkrVLELGcGt-Gl~gi-~aa~~ga~~V~~tD~s~ 133 (184)
.++.|||-+|||. |.=-+ .++..|..+|+.+|++.
T Consensus 10 i~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDT 46 (603)
T KOG2013|consen 10 IKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDT 46 (603)
T ss_pred hccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccc
Confidence 4688999999983 32222 45567888999999985
No 377
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=33.43 E-value=51 Score=26.71 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=25.7
Q ss_pred CCCCeEEEEcccc-CH-HHHHHHHcCCCeEEEEeCCH
Q 030031 99 FSGKRVLELGCGH-GL-PGIFACLEGAAVIHFQEFNA 133 (184)
Q Consensus 99 ~~gkrVLELGcGt-Gl-~gi~aa~~ga~~V~~tD~s~ 133 (184)
++..+|+=+|||. |. +...+++.|..+++.+|.+.
T Consensus 17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 5678999999995 21 11255678999999999873
No 378
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=33.40 E-value=82 Score=27.35 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=21.0
Q ss_pred CeEEEEcccc---CHHHHHHHH-cCCCeEEEEeCCHHHHH
Q 030031 102 KRVLELGCGH---GLPGIFACL-EGAAVIHFQEFNAEVLR 137 (184)
Q Consensus 102 krVLELGcGt---Gl~gi~aa~-~ga~~V~~tD~s~~~l~ 137 (184)
...||||||- |-+-..+.. ...++|+-+|++|-++.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~a 109 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLA 109 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHH
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHH
Confidence 3699999993 233333322 34569999999998876
No 379
>PRK06057 short chain dehydrogenase; Provisional
Probab=33.19 E-value=1.4e+02 Score=24.03 Aligned_cols=38 Identities=21% Similarity=0.333 Sum_probs=26.9
Q ss_pred CCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHH
Q 030031 99 FSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLR 137 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~ 137 (184)
+++++||=.|++.|+-.- .++..|+ +|+++|.++.-++
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~~~~~ 45 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDPEAGK 45 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHH
Confidence 678999999997655432 2334676 7999998876544
No 380
>PRK05872 short chain dehydrogenase; Provisional
Probab=33.13 E-value=1.4e+02 Score=25.02 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=29.7
Q ss_pred CCCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 98 SFSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
.++++++|=.|++.|+-.. .++..|+ +|+.++.+++.++.+
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~ 49 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAAL 49 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 5788999999987765442 3345687 799999988776544
No 381
>PRK14851 hypothetical protein; Provisional
Probab=32.94 E-value=28 Score=34.01 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=29.0
Q ss_pred CCCCCeEEEEccc-cCH-HHHHHHHcCCCeEEEEeCCH
Q 030031 98 SFSGKRVLELGCG-HGL-PGIFACLEGAAVIHFQEFNA 133 (184)
Q Consensus 98 ~~~gkrVLELGcG-tGl-~gi~aa~~ga~~V~~tD~s~ 133 (184)
.+++++|+=+||| .|- ....+++.|..+++.+|.+.
T Consensus 40 kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ 77 (679)
T PRK14851 40 RLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQ 77 (679)
T ss_pred HHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCE
Confidence 3678899999999 454 44578889999999999973
No 382
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=32.77 E-value=1.1e+02 Score=25.87 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=24.6
Q ss_pred CeEEEEcccc--CHHHHHHHHcCCCeEEEEeCCHHHHHHh
Q 030031 102 KRVLELGCGH--GLPGIFACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 102 krVLELGcGt--Gl~gi~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
++|.=+|||. +-++..+++.|. +|++.|.+++.++.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~ 42 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNA 42 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHH
Confidence 4566677762 122334455676 799999999988754
No 383
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=32.56 E-value=60 Score=25.74 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=22.7
Q ss_pred eEEEEcccc-CH-HHHHHHHcCCCeEEEEeCCH
Q 030031 103 RVLELGCGH-GL-PGIFACLEGAAVIHFQEFNA 133 (184)
Q Consensus 103 rVLELGcGt-Gl-~gi~aa~~ga~~V~~tD~s~ 133 (184)
+|+=+|||. |. ....+++.|..+++.+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 477888882 33 33466778988999999984
No 384
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=32.53 E-value=1.7e+02 Score=24.95 Aligned_cols=43 Identities=21% Similarity=0.243 Sum_probs=34.9
Q ss_pred CCCCCCeEEEEccccCHH---HHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 97 ISFSGKRVLELGCGHGLP---GIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 97 ~~~~gkrVLELGcGtGl~---gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
..++||.+|-=|...|+- ...+++.|+ +|+.++.+++-++...
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~ 49 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETA 49 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 357899999999999865 346778898 7999999988877654
No 385
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=32.22 E-value=2.3e+02 Score=22.71 Aligned_cols=42 Identities=26% Similarity=0.216 Sum_probs=29.5
Q ss_pred CCCCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 97 ISFSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 97 ~~~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
..++++++|=.|++.|+-.- .+++.|+ +|+.++.+++.++.+
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~ 51 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAA 51 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHH
Confidence 35789999999976665432 2334687 799999987766543
No 386
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=32.20 E-value=33 Score=30.25 Aligned_cols=31 Identities=29% Similarity=0.417 Sum_probs=21.2
Q ss_pred eEEEEccc-cCHH-HHHHHHcCCCeEEEEeCCH
Q 030031 103 RVLELGCG-HGLP-GIFACLEGAAVIHFQEFNA 133 (184)
Q Consensus 103 rVLELGcG-tGl~-gi~aa~~ga~~V~~tD~s~ 133 (184)
+||=+||| .|.- ...+++.|..+++.+|.+.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDT 33 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 47778886 2221 2255667989999999873
No 387
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=32.08 E-value=44 Score=30.93 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=25.3
Q ss_pred CeEEEEccc-cCHHHH-HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 102 KRVLELGCG-HGLPGI-FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 102 krVLELGcG-tGl~gi-~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
.+|-=+|=| .|++.- ..++.|. +|+|+|+++..++.+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~-~ViG~DIn~~~Vd~l 48 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGF-KVIGVDINQKKVDKL 48 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCC-ceEeEeCCHHHHHHH
Confidence 344445555 466553 4556777 799999999988754
No 388
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=31.88 E-value=2e+02 Score=23.41 Aligned_cols=43 Identities=28% Similarity=0.290 Sum_probs=30.9
Q ss_pred CCCCCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 96 NISFSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 96 ~~~~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
.+.+++|++|=.|++.|+-.. .++..|+ +|+.++.+++-++.+
T Consensus 5 ~~~~~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~ 50 (265)
T PRK07097 5 LFSLKGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKG 50 (265)
T ss_pred ccCCCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence 446788999999998876442 3445687 688889887666544
No 389
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=31.80 E-value=1.8e+02 Score=25.10 Aligned_cols=42 Identities=26% Similarity=0.279 Sum_probs=28.8
Q ss_pred CCCCCCCeEEEEcccc-CHHHHH-HHHcCCCeEEEEeCCHHHHHH
Q 030031 96 NISFSGKRVLELGCGH-GLPGIF-ACLEGAAVIHFQEFNAEVLRY 138 (184)
Q Consensus 96 ~~~~~gkrVLELGcGt-Gl~gi~-aa~~ga~~V~~tD~s~~~l~~ 138 (184)
.....+++|+=+|+|. |...+. +...|+ +|+..|.+++..+.
T Consensus 147 ~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~ 190 (296)
T PRK08306 147 PITIHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLAR 190 (296)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence 4456899999999973 232222 234687 89999999776543
No 390
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=31.78 E-value=1.5e+02 Score=27.19 Aligned_cols=38 Identities=24% Similarity=0.272 Sum_probs=26.9
Q ss_pred CCCCCCeEEEEcccc-CHHHHHHHH-cCCCeEEEEeCCHHH
Q 030031 97 ISFSGKRVLELGCGH-GLPGIFACL-EGAAVIHFQEFNAEV 135 (184)
Q Consensus 97 ~~~~gkrVLELGcGt-Gl~gi~aa~-~ga~~V~~tD~s~~~ 135 (184)
..+.|++|+=+|||. |......++ .|+ +|+++|.++.-
T Consensus 191 ~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r 230 (406)
T TIGR00936 191 LLIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIR 230 (406)
T ss_pred CCCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhh
Confidence 357899999999984 443333333 576 79999998754
No 391
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=31.78 E-value=56 Score=29.92 Aligned_cols=39 Identities=23% Similarity=0.561 Sum_probs=30.6
Q ss_pred CCCCCCCCeEEEEccc-cCHHHH-HHHHcCCCeEEEEeCCH
Q 030031 95 GNISFSGKRVLELGCG-HGLPGI-FACLEGAAVIHFQEFNA 133 (184)
Q Consensus 95 ~~~~~~gkrVLELGcG-tGl~gi-~aa~~ga~~V~~tD~s~ 133 (184)
+...+++..||=+||| -|.+.+ +++.+|..++=.+|++.
T Consensus 60 GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~Dv 100 (427)
T KOG2017|consen 60 GQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDV 100 (427)
T ss_pred cccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccce
Confidence 3445677899999998 577776 77888888888899873
No 392
>PRK08703 short chain dehydrogenase; Provisional
Probab=31.78 E-value=1.6e+02 Score=23.34 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=27.5
Q ss_pred CCCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 98 SFSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
.++++++|=.||+.|+-.- .++..|+ +|++++.+++.++.+
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~ 46 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKV 46 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHH
Confidence 3678999999975544332 2334576 799999988665543
No 393
>PRK06398 aldose dehydrogenase; Validated
Probab=31.65 E-value=88 Score=25.58 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=22.3
Q ss_pred CCCCCeEEEEccccCHHH---HHHHHcCCCeEEEEeCC
Q 030031 98 SFSGKRVLELGCGHGLPG---IFACLEGAAVIHFQEFN 132 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~g---i~aa~~ga~~V~~tD~s 132 (184)
.+++|++|=.|+..|+-. ..++..|+ +|+.++.+
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~ 39 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIK 39 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence 467899999998766533 23445676 57766554
No 394
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=31.61 E-value=96 Score=26.61 Aligned_cols=42 Identities=24% Similarity=0.211 Sum_probs=27.9
Q ss_pred CCCCCeEEEEccc-cCHHHHHHHH-cCCCeEEEEeCCHHHHHHhh
Q 030031 98 SFSGKRVLELGCG-HGLPGIFACL-EGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 98 ~~~gkrVLELGcG-tGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~ 140 (184)
..+|.+||=.|+| .|...+.+++ .|+ +|+++|.+++-++.+.
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~ 206 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLAL 206 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHH
Confidence 3468899999974 2333333333 577 6999999887776554
No 395
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=31.20 E-value=2.1e+02 Score=22.56 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=25.2
Q ss_pred CCCCeEEEEccccCHHHHH----HHHcCCCeEEEEeCCHHHHH
Q 030031 99 FSGKRVLELGCGHGLPGIF----ACLEGAAVIHFQEFNAEVLR 137 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~----aa~~ga~~V~~tD~s~~~l~ 137 (184)
.++++||=.|++ |.+|.. ++..|+ +|++++-+++.+.
T Consensus 4 ~~~~~ilItGas-g~iG~~l~~~l~~~g~-~V~~~~r~~~~~~ 44 (251)
T PRK12826 4 LEGRVALVTGAA-RGIGRAIAVRLAADGA-EVIVVDICGDDAA 44 (251)
T ss_pred CCCCEEEEcCCC-CcHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence 467889988865 555543 344576 7999998865544
No 396
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=31.12 E-value=1.5e+02 Score=27.40 Aligned_cols=37 Identities=24% Similarity=0.212 Sum_probs=26.5
Q ss_pred CCCCCCeEEEEccccCHHHHH----HHHcCCCeEEEEeCCHHHH
Q 030031 97 ISFSGKRVLELGCGHGLPGIF----ACLEGAAVIHFQEFNAEVL 136 (184)
Q Consensus 97 ~~~~gkrVLELGcGtGl~gi~----aa~~ga~~V~~tD~s~~~l 136 (184)
..+.|++|+=+|+|. +|.. +...|+ +|+.+|.++.-.
T Consensus 208 ~~l~Gk~VlViG~G~--IG~~vA~~lr~~Ga-~ViV~d~dp~ra 248 (425)
T PRK05476 208 VLIAGKVVVVAGYGD--VGKGCAQRLRGLGA-RVIVTEVDPICA 248 (425)
T ss_pred CCCCCCEEEEECCCH--HHHHHHHHHHhCCC-EEEEEcCCchhh
Confidence 347899999999973 4432 234577 799999987543
No 397
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=31.11 E-value=77 Score=28.77 Aligned_cols=35 Identities=20% Similarity=0.176 Sum_probs=26.1
Q ss_pred CCCCCeEEEEccc-cCHHH--HHHHHcCCCeEEEEeCCH
Q 030031 98 SFSGKRVLELGCG-HGLPG--IFACLEGAAVIHFQEFNA 133 (184)
Q Consensus 98 ~~~gkrVLELGcG-tGl~g--i~aa~~ga~~V~~tD~s~ 133 (184)
..++++|+=+|.| +|+-+ .++.+.|+ +|++.|..+
T Consensus 4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G~-~V~~~D~~~ 41 (461)
T PRK00421 4 LRRIKRIHFVGIGGIGMSGLAEVLLNLGY-KVSGSDLKE 41 (461)
T ss_pred cCCCCEEEEEEEchhhHHHHHHHHHhCCC-eEEEECCCC
Confidence 4567888888877 77663 35667787 799999864
No 398
>PRK07063 short chain dehydrogenase; Provisional
Probab=31.10 E-value=1.6e+02 Score=23.71 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=29.2
Q ss_pred CCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 99 FSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
+++|++|=.|++.|+-.- .+++.|+ +|+.+|.+++.++.+.
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~ 48 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAA 48 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 578999999987665332 3445687 7999999877666543
No 399
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=31.05 E-value=1.1e+02 Score=26.12 Aligned_cols=43 Identities=16% Similarity=0.076 Sum_probs=28.0
Q ss_pred eEEEEccccCHH--HHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHh
Q 030031 103 RVLELGCGHGLP--GIFACLEGAAVIHFQEFNAEVLRYLTIPNVIAN 147 (184)
Q Consensus 103 rVLELGcGtGl~--gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N 147 (184)
+|-=+|+|+=-. +..+++.|. +|+..|.+++.++... ..+..+
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~-~~i~~~ 51 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGR-NRIEKS 51 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHH-HHHHHH
Confidence 677778873222 234456676 8999999999988643 344433
No 400
>PRK10083 putative oxidoreductase; Provisional
Probab=31.01 E-value=1e+02 Score=26.01 Aligned_cols=41 Identities=15% Similarity=0.074 Sum_probs=27.7
Q ss_pred CCCCCeEEEEccccCHHHH---HHHH--cCCCeEEEEeCCHHHHHHhh
Q 030031 98 SFSGKRVLELGCGHGLPGI---FACL--EGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi---~aa~--~ga~~V~~tD~s~~~l~~l~ 140 (184)
..+|.+||=.|+| .+|. .+++ +|+..|+++|.+++-.+.+.
T Consensus 158 ~~~g~~vlI~g~g--~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~ 203 (339)
T PRK10083 158 PTEQDVALIYGAG--PVGLTIVQVLKGVYNVKAVIVADRIDERLALAK 203 (339)
T ss_pred CCCCCEEEEECCC--HHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence 3467888888854 4454 3444 48877888998877766543
No 401
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.85 E-value=1.6e+02 Score=23.28 Aligned_cols=40 Identities=33% Similarity=0.473 Sum_probs=27.8
Q ss_pred CCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 99 FSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
+++++||=.|++.|+-.. .+++.|+ +|++++.+++-++.+
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~ 45 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRM 45 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 568899999997554432 2334577 799999987766543
No 402
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=30.84 E-value=1.1e+02 Score=25.80 Aligned_cols=41 Identities=32% Similarity=0.316 Sum_probs=25.8
Q ss_pred CCCCeEEEEccc-cCHHHHHHHH-cCCCeEEEEeCCHHHHHHh
Q 030031 99 FSGKRVLELGCG-HGLPGIFACL-EGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 99 ~~gkrVLELGcG-tGl~gi~aa~-~ga~~V~~tD~s~~~l~~l 139 (184)
.++.+||-.|+| .|...+.+++ +|...|++++.+++..+.+
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~ 208 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLA 208 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence 357888887764 2444444444 4655788888877666543
No 403
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=30.70 E-value=55 Score=29.16 Aligned_cols=35 Identities=20% Similarity=0.445 Sum_probs=27.3
Q ss_pred CCCCCeEEEEccc-cCH-HHHHHHHcCCCeEEEEeCC
Q 030031 98 SFSGKRVLELGCG-HGL-PGIFACLEGAAVIHFQEFN 132 (184)
Q Consensus 98 ~~~gkrVLELGcG-tGl-~gi~aa~~ga~~V~~tD~s 132 (184)
.+++++|+=+||| .|. +...+++.|..+++.+|.+
T Consensus 132 ~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 132 RLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3578899999998 343 3346778899999999997
No 404
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=30.32 E-value=19 Score=26.90 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=11.1
Q ss_pred EEEEccccCHHHHHHH
Q 030031 104 VLELGCGHGLPGIFAC 119 (184)
Q Consensus 104 VLELGcGtGl~gi~aa 119 (184)
-+|+|||.|-.--.+.
T Consensus 6 NIDIGcG~GNTmda~f 21 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAF 21 (124)
T ss_pred ccccccCCCcchhhhh
Confidence 3799999996543333
No 405
>PRK07890 short chain dehydrogenase; Provisional
Probab=30.18 E-value=1.8e+02 Score=23.33 Aligned_cols=40 Identities=33% Similarity=0.345 Sum_probs=27.9
Q ss_pred CCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 99 FSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
.+++++|=.|++.|+-.- .++..|+ +|+.+|.+++-++.+
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~ 45 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEV 45 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 467899988886664432 3445687 799999987665544
No 406
>PRK06720 hypothetical protein; Provisional
Probab=30.11 E-value=2e+02 Score=22.50 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=28.5
Q ss_pred CCCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHH
Q 030031 98 SFSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRY 138 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~ 138 (184)
.++++.+|=-|.+.|+-.- .++..|+ +|+.+|.+.+.++.
T Consensus 13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~~ 55 (169)
T PRK06720 13 KLAGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQA 55 (169)
T ss_pred ccCCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence 3578899999988776443 3345676 79999988765543
No 407
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=30.00 E-value=1.1e+02 Score=26.57 Aligned_cols=41 Identities=12% Similarity=-0.004 Sum_probs=29.8
Q ss_pred CCCCCeEEEEccc--cCHHHHHHHH-cCCCeEEEEeCCHHHHHHh
Q 030031 98 SFSGKRVLELGCG--HGLPGIFACL-EGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 98 ~~~gkrVLELGcG--tGl~gi~aa~-~ga~~V~~tD~s~~~l~~l 139 (184)
..+|.+||=.|++ .|...+.+++ +|+ +|++++.+++-.+.+
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~ 199 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLL 199 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHH
Confidence 3568899999983 6666665555 576 799999887766644
No 408
>PRK06125 short chain dehydrogenase; Provisional
Probab=29.92 E-value=1.8e+02 Score=23.54 Aligned_cols=41 Identities=32% Similarity=0.485 Sum_probs=29.2
Q ss_pred CCCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 98 SFSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
.+++|++|=.|++.|+-.. .++..|+ +|++++.+++.++.+
T Consensus 4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~ 47 (259)
T PRK06125 4 HLAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEAL 47 (259)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 3678999999987664332 2445687 799999988766543
No 409
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=29.89 E-value=1.2e+02 Score=26.33 Aligned_cols=41 Identities=22% Similarity=0.387 Sum_probs=26.5
Q ss_pred CCCCeEEEEccc-cCHHHHHHH-HcCCCeEEEEeCCHHHHHHh
Q 030031 99 FSGKRVLELGCG-HGLPGIFAC-LEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 99 ~~gkrVLELGcG-tGl~gi~aa-~~ga~~V~~tD~s~~~l~~l 139 (184)
..+++||=.|+| .|...+.++ ..|+..|+++|.+++-.+.+
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~ 227 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELA 227 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence 457888888764 133333333 35776799999987766543
No 410
>PRK12829 short chain dehydrogenase; Provisional
Probab=29.88 E-value=1.7e+02 Score=23.45 Aligned_cols=41 Identities=24% Similarity=0.309 Sum_probs=29.0
Q ss_pred CCCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 98 SFSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
.++++++|=.|++.|+-.. .++..|+ +|++++.+++.++.+
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~ 51 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAAT 51 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 4688999999987555432 2334577 699999988766544
No 411
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=29.79 E-value=1.7e+02 Score=23.58 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=28.4
Q ss_pred CCCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 98 SFSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
.+++++||=.|+++|+-.- .++..|+ +|+.++.+.+.++.+
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~ 51 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHV 51 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence 4678999999977765443 2344677 688888877665543
No 412
>PRK08265 short chain dehydrogenase; Provisional
Probab=29.74 E-value=1.8e+02 Score=23.75 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=26.8
Q ss_pred CCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHH
Q 030031 99 FSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRY 138 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~ 138 (184)
++++++|=.|++.|+-.- .+++.|+ +|+.+|.+++-++.
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~ 45 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAA 45 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 578899999976654332 3445687 79999998765443
No 413
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=29.71 E-value=1.2e+02 Score=27.30 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=30.9
Q ss_pred CCC-CeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHH
Q 030031 99 FSG-KRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLTIPNV 144 (184)
Q Consensus 99 ~~g-krVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~~~Nv 144 (184)
|++ +..+|+|.|.|.+.-.+... ..+|-+++.+..-+-... +++
T Consensus 175 f~~v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a-~~~ 219 (342)
T KOG3178|consen 175 FKGVNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAA-PYL 219 (342)
T ss_pred cccCceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhh-hhh
Confidence 444 57999999999998766664 446899998865554332 444
No 414
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=29.68 E-value=1.6e+02 Score=23.88 Aligned_cols=40 Identities=33% Similarity=0.329 Sum_probs=28.4
Q ss_pred CCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 99 FSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
+++|++|=.|++.|+-.- .++..|+ +|+++|.+++.++.+
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~ 46 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASL 46 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 578899999987665432 3344677 799999987766544
No 415
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=29.65 E-value=1.2e+02 Score=24.15 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=24.1
Q ss_pred EEEEccccCHHH----HHHHHcCCCeEEEEeCCHHHHHHhhHHHHHH
Q 030031 104 VLELGCGHGLPG----IFACLEGAAVIHFQEFNAEVLRYLTIPNVIA 146 (184)
Q Consensus 104 VLELGcGtGl~g----i~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~ 146 (184)
|-=+|+| .+| ..++..|. +|+..|.+++.++... ..+..
T Consensus 2 V~ViGaG--~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~-~~i~~ 44 (180)
T PF02737_consen 2 VAVIGAG--TMGRGIAALFARAGY-EVTLYDRSPEALERAR-KRIER 44 (180)
T ss_dssp EEEES-S--HHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHH-HHHHH
T ss_pred EEEEcCC--HHHHHHHHHHHhCCC-cEEEEECChHHHHhhh-hHHHH
Confidence 3445664 444 23445676 8999999999988764 44544
No 416
>PRK14852 hypothetical protein; Provisional
Probab=29.62 E-value=35 Score=34.88 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=29.2
Q ss_pred CCCCCeEEEEccc-cC-HHHHHHHHcCCCeEEEEeCCH
Q 030031 98 SFSGKRVLELGCG-HG-LPGIFACLEGAAVIHFQEFNA 133 (184)
Q Consensus 98 ~~~gkrVLELGcG-tG-l~gi~aa~~ga~~V~~tD~s~ 133 (184)
.++..+|+=+||| .| .....+++.|..+++.+|.+.
T Consensus 329 kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~ 366 (989)
T PRK14852 329 RLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDA 366 (989)
T ss_pred HHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 3577899999999 44 445678889999999999984
No 417
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=29.44 E-value=1.1e+02 Score=27.22 Aligned_cols=42 Identities=29% Similarity=0.321 Sum_probs=25.6
Q ss_pred CCCCeEEEEccc-cCHHHHHHHH-cCCCeEEEEeCCHHHHHHhh
Q 030031 99 FSGKRVLELGCG-HGLPGIFACL-EGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 99 ~~gkrVLELGcG-tGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~ 140 (184)
..+++||=.|+| .|+..+.+++ +|+..|+.+|.+++-++.+.
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~ 227 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQAR 227 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHH
Confidence 457777776664 2333333333 68866777888876666544
No 418
>PRK06172 short chain dehydrogenase; Provisional
Probab=29.13 E-value=2.3e+02 Score=22.60 Aligned_cols=41 Identities=27% Similarity=0.230 Sum_probs=28.6
Q ss_pred CCCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 98 SFSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
.+++|++|=.|++.|+-.- .+++.|+ +|++++.+++-++.+
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~ 47 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEET 47 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 3678999999986665443 2344676 799999987665543
No 419
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=29.10 E-value=1.2e+02 Score=25.73 Aligned_cols=39 Identities=13% Similarity=-0.051 Sum_probs=27.1
Q ss_pred CCeEEEEcc--ccCHHHHHHHH-cCCCeEEEEeCCHHHHHHh
Q 030031 101 GKRVLELGC--GHGLPGIFACL-EGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 101 gkrVLELGc--GtGl~gi~aa~-~ga~~V~~tD~s~~~l~~l 139 (184)
+.+||=.|+ |.|...+.+++ +|+.+|++++.+++-.+.+
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~ 196 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLL 196 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH
Confidence 378998886 45556665555 5765799999887665544
No 420
>PRK07877 hypothetical protein; Provisional
Probab=29.10 E-value=59 Score=32.07 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=28.1
Q ss_pred CCCCCeEEEEccccCHHH-HHHHHcCC-CeEEEEeCCH
Q 030031 98 SFSGKRVLELGCGHGLPG-IFACLEGA-AVIHFQEFNA 133 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~g-i~aa~~ga-~~V~~tD~s~ 133 (184)
.++.++|+=+|||.|-.. ..++..|. .+++.+|.+.
T Consensus 104 ~L~~~~V~IvG~GlGs~~a~~LaraGvvG~l~lvD~D~ 141 (722)
T PRK07877 104 RLGRLRIGVVGLSVGHAIAHTLAAEGLCGELRLADFDT 141 (722)
T ss_pred HHhcCCEEEEEecHHHHHHHHHHHccCCCeEEEEcCCE
Confidence 457889999999876544 36677884 7999999983
No 421
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=28.82 E-value=1.9e+02 Score=23.68 Aligned_cols=41 Identities=27% Similarity=0.251 Sum_probs=29.2
Q ss_pred CCCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 98 SFSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
.++++++|=.|++.|+-.- .+++.|+ +|+.+|.+++.++.+
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~ 50 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAV 50 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 4678999999987765332 3345687 799999987666544
No 422
>PRK07062 short chain dehydrogenase; Provisional
Probab=28.80 E-value=1.9e+02 Score=23.38 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=29.4
Q ss_pred CCCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 98 SFSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
.+++|++|=.|++.|+-.- .++..|+ +|++++.+++-++.+
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~ 48 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASA 48 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence 4678999999988775443 3344677 699999987666544
No 423
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=28.73 E-value=1.1e+02 Score=29.94 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=30.9
Q ss_pred CeEEEEccccCHHHH--HHHHcCCCeEEEEeCCHHHHHHhhHHHHHHh
Q 030031 102 KRVLELGCGHGLPGI--FACLEGAAVIHFQEFNAEVLRYLTIPNVIAN 147 (184)
Q Consensus 102 krVLELGcGtGl~gi--~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N 147 (184)
++|-=+|+|+=-.+| .++..|. .|+..|.+++.++... ..+..+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~-~~~~~~ 359 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGM-TEAAKL 359 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHH-HHHHHH
Confidence 578889988633333 4566787 7999999999987653 444443
No 424
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=28.67 E-value=72 Score=28.66 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=27.4
Q ss_pred CCCCCeEEEEccc-cCHHH-HHHHHcCCCeEEEEeCCH
Q 030031 98 SFSGKRVLELGCG-HGLPG-IFACLEGAAVIHFQEFNA 133 (184)
Q Consensus 98 ~~~gkrVLELGcG-tGl~g-i~aa~~ga~~V~~tD~s~ 133 (184)
.+++++||=+||| .|... ..+++.|..+++.+|.+.
T Consensus 38 ~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 38 RLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 4678899999999 33333 366778988999999983
No 425
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.66 E-value=2.4e+02 Score=22.34 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=27.8
Q ss_pred CCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 99 FSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
++++++|=.|+..|+-.. .++..|+ +|++++.+++-++.+
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~ 45 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERV 45 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 577889988877654442 3344677 699999998665544
No 426
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=28.65 E-value=1.7e+02 Score=23.65 Aligned_cols=40 Identities=28% Similarity=0.236 Sum_probs=27.9
Q ss_pred CCCCCeEEEEccccCHHHHHHH----HcCCCeEEEEeCCHHHHHHh
Q 030031 98 SFSGKRVLELGCGHGLPGIFAC----LEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa----~~ga~~V~~tD~s~~~l~~l 139 (184)
.++++++|=.|+ +|.+|..++ +.|+ +|+.++.+++-++.+
T Consensus 9 ~~~~k~ilItGa-~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~ 52 (259)
T PRK08213 9 DLSGKTALVTGG-SRGLGLQIAEALGEAGA-RVVLSARKAEELEEA 52 (259)
T ss_pred CcCCCEEEEECC-CchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 467899999995 455555433 4577 799999887665543
No 427
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=28.39 E-value=92 Score=25.45 Aligned_cols=33 Identities=33% Similarity=0.348 Sum_probs=29.8
Q ss_pred CCeEEEEccccCHHHHHHHHcCCCeEEEEeCCH
Q 030031 101 GKRVLELGCGHGLPGIFACLEGAAVIHFQEFNA 133 (184)
Q Consensus 101 gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~ 133 (184)
||+++=+|+..-.+=..+.+.||++|+-+++++
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~ 34 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNK 34 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecc
Confidence 688999999988888899999999999999984
No 428
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=28.27 E-value=89 Score=27.66 Aligned_cols=43 Identities=12% Similarity=-0.057 Sum_probs=29.5
Q ss_pred CCCCCeEEEEccccCHHHHHHHH-cCCCeEEEEeCCHHHHHHhh
Q 030031 98 SFSGKRVLELGCGHGLPGIFACL-EGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~ 140 (184)
..++...+|.--|.|--+..... .+..+|++.|.++++++.+.
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~ 61 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAK 61 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHH
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHH
Confidence 34567899999999988876664 34469999999999997654
No 429
>PRK05876 short chain dehydrogenase; Provisional
Probab=28.26 E-value=1.6e+02 Score=24.41 Aligned_cols=40 Identities=20% Similarity=0.246 Sum_probs=28.8
Q ss_pred CCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 99 FSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
+++|++|=.|+++|+-.- .++..|+ +|+.+|.+++-++.+
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~ 46 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQA 46 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 678999999988776442 3345677 799999987666544
No 430
>PRK05993 short chain dehydrogenase; Provisional
Probab=28.20 E-value=1.5e+02 Score=24.49 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=25.2
Q ss_pred CCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 101 GKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 101 gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
+++||=.|++.|+-.. .+++.|+ +|++++.+++.++.+
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l 44 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGW-RVFATCRKEEDVAAL 44 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence 5788888886544322 2334676 799999887766544
No 431
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=28.20 E-value=65 Score=26.10 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=25.5
Q ss_pred CCCCeEEEEccccCHHH---HHHHHcCCCeEEEEeCCH
Q 030031 99 FSGKRVLELGCGHGLPG---IFACLEGAAVIHFQEFNA 133 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~g---i~aa~~ga~~V~~tD~s~ 133 (184)
++.++|+=+|||. +-+ ..+++.|..+++.+|.+.
T Consensus 19 L~~s~VlIiG~gg-lG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 19 LRSARILLIGLKG-LGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HHhCcEEEEcCCH-HHHHHHHHHHHcCCCEEEEEECCc
Confidence 5678999999985 222 245567999999999873
No 432
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=27.83 E-value=1.6e+02 Score=27.52 Aligned_cols=50 Identities=22% Similarity=0.183 Sum_probs=37.8
Q ss_pred CCCeEEEEccccCHHHHHHHHc-C----CCeEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 100 SGKRVLELGCGHGLPGIFACLE-G----AAVIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~-g----a~~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
...+|.|--||+|.+-+.+.+. + ...++|++.++.+.+.+. -|...+...
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~-mN~~lhgi~ 240 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAK-MNLILHGIE 240 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHH-HHHHHhCCC
Confidence 4459999999999887765542 1 235899999999998775 777776665
No 433
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=27.55 E-value=1.8e+02 Score=23.23 Aligned_cols=40 Identities=18% Similarity=0.107 Sum_probs=28.0
Q ss_pred CCCCCeEEEEccccCHHHHH----HHHcCCCeEEEEeCCHHHHHHh
Q 030031 98 SFSGKRVLELGCGHGLPGIF----ACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~----aa~~ga~~V~~tD~s~~~l~~l 139 (184)
.+++++||=.|+ +|.+|.. ++..|+ +|+++|.+.+.++.+
T Consensus 9 ~~~~k~vlItG~-~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~ 52 (247)
T PRK08945 9 LLKDRIILVTGA-GDGIGREAALTYARHGA-TVILLGRTEEKLEAV 52 (247)
T ss_pred ccCCCEEEEeCC-CchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Confidence 468899999996 4555543 334576 799999987665544
No 434
>PRK06196 oxidoreductase; Provisional
Probab=27.40 E-value=2e+02 Score=24.25 Aligned_cols=41 Identities=24% Similarity=0.265 Sum_probs=28.2
Q ss_pred CCCCCCeEEEEccccCHHHHHH----HHcCCCeEEEEeCCHHHHHHh
Q 030031 97 ISFSGKRVLELGCGHGLPGIFA----CLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 97 ~~~~gkrVLELGcGtGl~gi~a----a~~ga~~V~~tD~s~~~l~~l 139 (184)
..+++++||=.|++.| +|..+ +..|+ +|++++.+++.++.+
T Consensus 22 ~~l~~k~vlITGasgg-IG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~ 66 (315)
T PRK06196 22 HDLSGKTAIVTGGYSG-LGLETTRALAQAGA-HVIVPARRPDVAREA 66 (315)
T ss_pred CCCCCCEEEEeCCCch-HHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 3467899999997655 45433 34677 799999887665543
No 435
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=27.37 E-value=1.7e+02 Score=26.51 Aligned_cols=38 Identities=26% Similarity=0.306 Sum_probs=27.0
Q ss_pred CCCCCeEEEEccccCHHHH----HHHHcCCCeEEEEeCCHHHHH
Q 030031 98 SFSGKRVLELGCGHGLPGI----FACLEGAAVIHFQEFNAEVLR 137 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi----~aa~~ga~~V~~tD~s~~~l~ 137 (184)
.+++++|+=+||| -+|. .+...|+.+|+.+|.+.+..+
T Consensus 177 ~l~~~~VlViGaG--~iG~~~a~~L~~~G~~~V~v~~rs~~ra~ 218 (417)
T TIGR01035 177 SLKGKKALLIGAG--EMGELVAKHLLRKGVGKILIANRTYERAE 218 (417)
T ss_pred CccCCEEEEECCh--HHHHHHHHHHHHCCCCEEEEEeCCHHHHH
Confidence 4678999999985 3443 233467678999999876543
No 436
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=27.27 E-value=1.3e+02 Score=25.08 Aligned_cols=42 Identities=19% Similarity=0.109 Sum_probs=28.3
Q ss_pred CCCCCeEEEEccc-cCHHHHHHHH-cCCCeEEEEeCCHHHHHHhh
Q 030031 98 SFSGKRVLELGCG-HGLPGIFACL-EGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 98 ~~~gkrVLELGcG-tGl~gi~aa~-~ga~~V~~tD~s~~~l~~l~ 140 (184)
..++.+||-.||| .|...+.+++ .|. +|+.++-+++.++.+.
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~ 203 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELAR 203 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 3467788888876 4444443444 476 7999999888776553
No 437
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=26.91 E-value=1.7e+02 Score=24.79 Aligned_cols=38 Identities=21% Similarity=0.198 Sum_probs=24.8
Q ss_pred CeEEEEccccCHHHH--HHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 102 KRVLELGCGHGLPGI--FACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 102 krVLELGcGtGl~gi--~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
++|-=+|+|+=-.++ .++..|. +|+..|.+++.++.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~ 43 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAK 43 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHH
Confidence 356667776322223 3445566 7999999998887664
No 438
>PRK07856 short chain dehydrogenase; Provisional
Probab=26.91 E-value=1.5e+02 Score=23.89 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=24.5
Q ss_pred CCCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHH
Q 030031 98 SFSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAE 134 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~ 134 (184)
.+++|++|=.|++.|+-.. .++..|+ +|+.+|.+++
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~~ 41 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRAP 41 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCChh
Confidence 4678999988987776432 3445676 6888877653
No 439
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.89 E-value=1e+02 Score=27.82 Aligned_cols=38 Identities=24% Similarity=0.176 Sum_probs=26.4
Q ss_pred CCCCeEEEEccccCHHHH--HHHHcCCCeEEEEeCCHHHHH
Q 030031 99 FSGKRVLELGCGHGLPGI--FACLEGAAVIHFQEFNAEVLR 137 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi--~aa~~ga~~V~~tD~s~~~l~ 137 (184)
+++++|+=+|+|..-.+. ++...|+ .|++.|..+....
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~G~-~v~~~D~~~~~~~ 46 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAGGA-EVIAWDDNPASRA 46 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEECCChhhHH
Confidence 467889999988443343 4455787 7999998765443
No 440
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=26.82 E-value=1.3e+02 Score=25.87 Aligned_cols=40 Identities=20% Similarity=0.245 Sum_probs=25.5
Q ss_pred CCCCeEEEEccc-cCHHHHHHHH-cCCCeEEEEeC---CHHHHHHh
Q 030031 99 FSGKRVLELGCG-HGLPGIFACL-EGAAVIHFQEF---NAEVLRYL 139 (184)
Q Consensus 99 ~~gkrVLELGcG-tGl~gi~aa~-~ga~~V~~tD~---s~~~l~~l 139 (184)
.+|++||=.||| .|++.+.+++ .|+ +|++++. +++-++.+
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~ 215 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIV 215 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHH
Confidence 468899999875 2344443443 577 7999986 55555544
No 441
>PRK07454 short chain dehydrogenase; Provisional
Probab=26.78 E-value=1.8e+02 Score=23.08 Aligned_cols=38 Identities=21% Similarity=0.095 Sum_probs=25.6
Q ss_pred CCCeEEEEccccCHHHHH----HHHcCCCeEEEEeCCHHHHHHh
Q 030031 100 SGKRVLELGCGHGLPGIF----ACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~----aa~~ga~~V~~tD~s~~~l~~l 139 (184)
++|++|=.|+ +|.+|.. ++..|. +|++++.+++-.+.+
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~ 46 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGW-DLALVARSQDALEAL 46 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 4578888886 4555543 344677 799999987665543
No 442
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.54 E-value=2.4e+02 Score=22.22 Aligned_cols=40 Identities=23% Similarity=0.322 Sum_probs=27.1
Q ss_pred CCCCeEEEEccccCHHHHH---HHHcCCCeEEEEeCCHHHHHHh
Q 030031 99 FSGKRVLELGCGHGLPGIF---ACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~---aa~~ga~~V~~tD~s~~~l~~l 139 (184)
++++++|=.|++.|+-... +++.|+ +|+.+|.++.-++.+
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~ 45 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEA 45 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 5788999999765543332 334576 799999987655443
No 443
>PRK06138 short chain dehydrogenase; Provisional
Probab=26.48 E-value=2.1e+02 Score=22.76 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=27.2
Q ss_pred CCCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHH
Q 030031 98 SFSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRY 138 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~ 138 (184)
.++++++|=.||..|+-.. .+++.|+ +|++++.+.+.++.
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~ 44 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRDAEAAER 44 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCCHHHHHH
Confidence 3578899999986554442 2344676 79999888765543
No 444
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=26.46 E-value=1.4e+02 Score=23.87 Aligned_cols=35 Identities=29% Similarity=0.142 Sum_probs=24.7
Q ss_pred CCCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCH
Q 030031 98 SFSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNA 133 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~ 133 (184)
.+++|+||=.|++.|+-.- .+++.|+ +|++++.++
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~ 39 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSE 39 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCch
Confidence 3688999999997764332 3344677 788888764
No 445
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.40 E-value=93 Score=28.54 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=26.2
Q ss_pred CCCCeEEEEccc-cCHHHH-HHHHcCCCeEEEEeCCH
Q 030031 99 FSGKRVLELGCG-HGLPGI-FACLEGAAVIHFQEFNA 133 (184)
Q Consensus 99 ~~gkrVLELGcG-tGl~gi-~aa~~ga~~V~~tD~s~ 133 (184)
+++++|+=+|-| +|.-.. ++.+.|+ +|+..|.++
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~-~v~~~d~~~ 41 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLP-AQALTLFCN 41 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCC-EEEEEcCCC
Confidence 468899999999 777766 4455677 799999753
No 446
>PRK07326 short chain dehydrogenase; Provisional
Probab=26.23 E-value=2e+02 Score=22.59 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=26.3
Q ss_pred CCCCeEEEEccccCHHHHHHH----HcCCCeEEEEeCCHHHHHHh
Q 030031 99 FSGKRVLELGCGHGLPGIFAC----LEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~aa----~~ga~~V~~tD~s~~~l~~l 139 (184)
+.++++|=.|+ +|.+|..++ ..|+ +|++++.++.-++.+
T Consensus 4 ~~~~~ilItGa-tg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~ 46 (237)
T PRK07326 4 LKGKVALITGG-SKGIGFAIAEALLAEGY-KVAITARDQKELEEA 46 (237)
T ss_pred CCCCEEEEECC-CCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHH
Confidence 45788999996 555554333 4576 699999887665544
No 447
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=25.79 E-value=1.5e+02 Score=27.21 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=27.0
Q ss_pred CeEEEEccccCHHHH----HHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 102 KRVLELGCGHGLPGI----FACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 102 krVLELGcGtGl~gi----~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
++||=|||| .+|- .+++.+..+|+..|.+.+-.+.+.
T Consensus 2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~ 42 (389)
T COG1748 2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIA 42 (389)
T ss_pred CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Confidence 579999994 4443 334557569999999987777665
No 448
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=25.79 E-value=1.7e+02 Score=24.91 Aligned_cols=42 Identities=24% Similarity=0.226 Sum_probs=30.8
Q ss_pred CCCCCeEEEEccccCHHHH--HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 98 SFSGKRVLELGCGHGLPGI--FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi--~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
.+++++||=+|||.---++ .++..|.++|+.++-+++-.+.+
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~L 165 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRL 165 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence 4678999999999655444 34457888999999987655544
No 449
>PRK05866 short chain dehydrogenase; Provisional
Probab=25.71 E-value=2.3e+02 Score=23.86 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=29.4
Q ss_pred CCCCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 97 ISFSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 97 ~~~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
..+++++||=.|++.|+-.. .+++.|+ +|++++.+.+.++.+
T Consensus 36 ~~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~ 80 (293)
T PRK05866 36 VDLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAV 80 (293)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence 34678899999987665332 2345676 799999987766544
No 450
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=25.70 E-value=1.3e+02 Score=24.49 Aligned_cols=42 Identities=24% Similarity=0.173 Sum_probs=27.0
Q ss_pred CCCCCeEEEEcccc-CHHHHHHHH-cCCCeEEEEeCCHHHHHHh
Q 030031 98 SFSGKRVLELGCGH-GLPGIFACL-EGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 98 ~~~gkrVLELGcGt-Gl~gi~aa~-~ga~~V~~tD~s~~~l~~l 139 (184)
..++.+||=.|||. |...+..++ .|+.+|++++.+++..+.+
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~ 138 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELA 138 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHH
Confidence 34678888887652 333343343 5764499999988776643
No 451
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=25.67 E-value=1.8e+02 Score=25.68 Aligned_cols=37 Identities=16% Similarity=-0.086 Sum_probs=24.9
Q ss_pred CeEEEEccccC--HHHHHHHHcCCCeEEEEeCCHHHHHHh
Q 030031 102 KRVLELGCGHG--LPGIFACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 102 krVLELGcGtG--l~gi~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
++|-=+|+|+= -++..++..|. +|+..|.+++.++.+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~ 46 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAAL 46 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHH
Confidence 46777777631 12223456777 899999999887654
No 452
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=25.43 E-value=1.4e+02 Score=24.11 Aligned_cols=35 Identities=26% Similarity=0.215 Sum_probs=24.4
Q ss_pred CCCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCH
Q 030031 98 SFSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNA 133 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~ 133 (184)
.+++|++|=.|+..|+-.- .+++.|+ +|+++|.+.
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~~~~ 44 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGC-DIVGINIVE 44 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEecCcc
Confidence 4778999999987665332 3344677 688888753
No 453
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=25.36 E-value=1.3e+02 Score=25.54 Aligned_cols=38 Identities=24% Similarity=0.303 Sum_probs=26.0
Q ss_pred CCCeEEEEccccCHHHHHH---H-HcCCCeEEEEeCCHHHHHHh
Q 030031 100 SGKRVLELGCGHGLPGIFA---C-LEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~a---a-~~ga~~V~~tD~s~~~l~~l 139 (184)
++.+||=.|+ |.+|.++ + ..|+++|++++.+++..+.+
T Consensus 175 ~~~~vlI~g~--g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~ 216 (350)
T cd08240 175 ADEPVVIIGA--GGLGLMALALLKALGPANIIVVDIDEAKLEAA 216 (350)
T ss_pred CCCEEEEECC--cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence 6788888875 5555433 3 35776899999887766554
No 454
>PRK09273 hypothetical protein; Provisional
Probab=25.34 E-value=1.3e+02 Score=25.26 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=18.3
Q ss_pred EEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 105 LELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 105 LELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
-=++||||.-...++-.-..-..+.=.++.......
T Consensus 67 GIliCGTGiG~siAANK~pGIraalc~d~~sA~lar 102 (211)
T PRK09273 67 VVTGCGTGQGAMLALNSFPGVVCGYCIDPTDAYLFA 102 (211)
T ss_pred EEEEcCcHHHHHHHHhcCCCeEEEEeCCHHHHHHHH
Confidence 347999998666555432212233333444444333
No 455
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=25.00 E-value=1.3e+02 Score=24.32 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=23.5
Q ss_pred CCCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCH
Q 030031 98 SFSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNA 133 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~ 133 (184)
.+++|++|=.|++.|+-.. .+++.|+ +|+.+|.++
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~-~v~~~~~~~ 43 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGA-NVVNADIHG 43 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 4678999999987775442 3445676 677766553
No 456
>PRK07825 short chain dehydrogenase; Provisional
Probab=24.77 E-value=2.6e+02 Score=22.70 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=28.1
Q ss_pred CCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 99 FSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
++++++|=.|++.|+-.. .++..|+ +|+.++.+++.++.+
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~ 45 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGA-RVAIGDLDEALAKET 45 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence 567899999987765443 2345677 689999887766543
No 457
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=24.58 E-value=1.2e+02 Score=26.23 Aligned_cols=44 Identities=16% Similarity=0.077 Sum_probs=33.9
Q ss_pred cCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHH
Q 030031 94 NGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLR 137 (184)
Q Consensus 94 ~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~ 137 (184)
++.-.+...-|.|+|-|-|-++-.....|+++...++.+...+.
T Consensus 44 K~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip 87 (326)
T KOG0821|consen 44 KKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIP 87 (326)
T ss_pred HhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccCh
Confidence 33445667789999999998888777778888888888765544
No 458
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=24.53 E-value=2e+02 Score=24.32 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=25.0
Q ss_pred CeEEEEccccCHHH--HHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 102 KRVLELGCGHGLPG--IFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 102 krVLELGcGtGl~g--i~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
++|.=+|+|+=-.+ ..++..|. +|+..|.+++.++.+.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~ 44 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGL 44 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHH
Confidence 45666777632222 34445666 7999999999887643
No 459
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=24.45 E-value=1.1e+02 Score=26.33 Aligned_cols=38 Identities=16% Similarity=0.038 Sum_probs=28.5
Q ss_pred CeEEEEccc--cCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 102 KRVLELGCG--HGLPGIFACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 102 krVLELGcG--tGl~gi~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
++|+=+||| .|+++..+++.|. .|++++-..+-++.+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~ 42 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQ 42 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHh
Confidence 368888888 5667777777886 6999999866666554
No 460
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=24.41 E-value=66 Score=28.03 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=25.3
Q ss_pred CCCCeEEEEcccc-CH-HHHHHHHcCCCeEEEEeCCH
Q 030031 99 FSGKRVLELGCGH-GL-PGIFACLEGAAVIHFQEFNA 133 (184)
Q Consensus 99 ~~gkrVLELGcGt-Gl-~gi~aa~~ga~~V~~tD~s~ 133 (184)
++..+||=+|||. |. ....+++.|.++++..|.+.
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 4567899999982 22 22255668999999999874
No 461
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=24.30 E-value=1.7e+02 Score=24.70 Aligned_cols=48 Identities=10% Similarity=0.095 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhcCCCCCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 030031 83 DLVKALRLDVQNGNISFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRY 138 (184)
Q Consensus 83 ~La~~l~~~i~~~~~~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~ 138 (184)
.++.++...+. -...+-+|.-||.|.+.+... ...++.-|++++++..
T Consensus 13 ~l~~~i~~~~p-----~~~~~yvEPF~Gggsv~l~~~---~~~~~lND~n~~Li~~ 60 (266)
T TIGR00571 13 SLLPEIKKHLP-----KNFNCLVEPFVGGGAVFFNLN---PKRYLLNDINEDLINL 60 (266)
T ss_pred HHHHHHHHhcC-----cccCEEEEecCCcchhheeec---CcEEEEecCCHHHHHH
Confidence 46777776542 122489999999999987543 2468999999988763
No 462
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=24.25 E-value=3e+02 Score=22.67 Aligned_cols=35 Identities=26% Similarity=0.250 Sum_probs=25.9
Q ss_pred CCCCCCeEEEEccccCHHHH----HHHHcCCCeEEEEeCCH
Q 030031 97 ISFSGKRVLELGCGHGLPGI----FACLEGAAVIHFQEFNA 133 (184)
Q Consensus 97 ~~~~gkrVLELGcGtGl~gi----~aa~~ga~~V~~tD~s~ 133 (184)
..++|++|+=.|+| -+|. .+...|++.|..+|.+.
T Consensus 19 ~~l~g~~vaIqGfG--nVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 19 DSLEGLTVAVQGLG--NVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CCcCCCEEEEECCC--HHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 46789999999876 3443 44456887788899988
No 463
>PRK05717 oxidoreductase; Validated
Probab=24.24 E-value=2.5e+02 Score=22.58 Aligned_cols=40 Identities=20% Similarity=0.246 Sum_probs=26.8
Q ss_pred CCCCCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHH
Q 030031 96 NISFSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVL 136 (184)
Q Consensus 96 ~~~~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l 136 (184)
...++||++|=.|++.|+-.- .++..|+ +|+.+|.++.-.
T Consensus 5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~ 47 (255)
T PRK05717 5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDRERG 47 (255)
T ss_pred CcccCCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCHHHH
Confidence 346789999988876554332 2334576 799999876543
No 464
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=24.13 E-value=1.9e+02 Score=24.43 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=23.8
Q ss_pred eEEEEccccCHHHH----HHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 103 RVLELGCGHGLPGI----FACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 103 rVLELGcGtGl~gi----~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
+|.=+|+| .+|. .+++.|. +|+..|.+++.++.+.
T Consensus 3 ~V~VIG~G--~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~ 41 (288)
T PRK09260 3 KLVVVGAG--VMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQ 41 (288)
T ss_pred EEEEECcc--HHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Confidence 45556664 4443 3445676 7999999999988764
No 465
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=24.07 E-value=82 Score=27.65 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=30.7
Q ss_pred CCCCeEEEEccccCHHH---HHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHhCCC
Q 030031 99 FSGKRVLELGCGHGLPG---IFACLEGAAVIHFQEFNAEVLRYLTIPNVIANVPK 150 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~g---i~aa~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~~~ 150 (184)
++..+||=+||| |+-+ ..++..|..+++..|.+.- ...|+.+|..-
T Consensus 24 L~~SrVLVVG~G-GLGsEVAKnLaLAGVGsItIvDdD~V-----e~SNL~RQfl~ 72 (287)
T PTZ00245 24 LMHTSVALHGVA-GAAAEAAKNLVLAGVRAVAVADEGLV-----TDADVCTNYLM 72 (287)
T ss_pred HhhCeEEEECCC-chHHHHHHHHHHcCCCeEEEecCCcc-----chhhhcccccc
Confidence 567799999997 2322 2556678889999999843 33555555433
No 466
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.03 E-value=2.3e+02 Score=22.39 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=26.9
Q ss_pred CCCCeEEEEccccCHHHHHH----HHcCCCeEEEEeCCHHHHHHh
Q 030031 99 FSGKRVLELGCGHGLPGIFA----CLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~a----a~~ga~~V~~tD~s~~~l~~l 139 (184)
++++++|=.|+ +|.+|..+ +..|+ +|++++.+++-++.+
T Consensus 5 ~~~~~vlVtG~-sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~ 47 (239)
T PRK07666 5 LQGKNALITGA-GRGIGRAVAIALAKEGV-NVGLLARTEENLKAV 47 (239)
T ss_pred CCCCEEEEEcC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 46788888996 55556543 34587 799999987655443
No 467
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=23.74 E-value=3.6e+02 Score=21.11 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=28.2
Q ss_pred CCCCCCCeEEEEcc-c-cCHHH-HHHHHcCCCeEEEEeCCHHHHHHh
Q 030031 96 NISFSGKRVLELGC-G-HGLPG-IFACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 96 ~~~~~gkrVLELGc-G-tGl~g-i~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
...+++++++=+|+ | .|... ..++..|+ +|+.++.+.+-++.+
T Consensus 23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l 68 (194)
T cd01078 23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKA 68 (194)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence 44678999999996 3 33222 23445675 899998887655544
No 468
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=23.54 E-value=3.1e+02 Score=21.95 Aligned_cols=41 Identities=27% Similarity=0.308 Sum_probs=28.4
Q ss_pred CCCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 98 SFSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
.+++|++|=.|++.|+-.- .+++.|+ +|+.+|.+++-++.+
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~ 49 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELA 49 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHH
Confidence 4678999999977655432 3344677 799999987665543
No 469
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=23.40 E-value=1.6e+02 Score=26.29 Aligned_cols=40 Identities=25% Similarity=0.266 Sum_probs=27.0
Q ss_pred CCCCeEEEEccc-cCHHHHHHH-HcCCCeEEEEeCCHHHHHHh
Q 030031 99 FSGKRVLELGCG-HGLPGIFAC-LEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 99 ~~gkrVLELGcG-tGl~gi~aa-~~ga~~V~~tD~s~~~l~~l 139 (184)
.++++|+=+|+| .|...+..+ .+|+ +|+.+|.+++.++.+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l 206 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQL 206 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHH
Confidence 356789999887 344444333 3687 799999998766544
No 470
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=23.29 E-value=1.7e+02 Score=28.50 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=30.5
Q ss_pred CeEEEEccccCHHHH--HHH-HcCCCeEEEEeCCHHHHHHhhHHHHHHhC
Q 030031 102 KRVLELGCGHGLPGI--FAC-LEGAAVIHFQEFNAEVLRYLTIPNVIANV 148 (184)
Q Consensus 102 krVLELGcGtGl~gi--~aa-~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~ 148 (184)
++|-=+|+|+=-.+| .++ ..|. .|+..|.+++.++... ..+..+.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~-~~~~~~l 357 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHAL-KYSWDLL 357 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHH-HHHHHHH
Confidence 578889998632333 334 5676 8999999999887654 4454443
No 471
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=23.17 E-value=3.6e+02 Score=24.52 Aligned_cols=49 Identities=22% Similarity=0.212 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhcCCCCCCCCeEEEEcc---------------ccCHHHHHHH----HcCCCeEEEEeCCH
Q 030031 82 IDLVKALRLDVQNGNISFSGKRVLELGC---------------GHGLPGIFAC----LEGAAVIHFQEFNA 133 (184)
Q Consensus 82 ~~La~~l~~~i~~~~~~~~gkrVLELGc---------------GtGl~gi~aa----~~ga~~V~~tD~s~ 133 (184)
.+...++.+.+. ..+++|++||=-|. .+|.+|..++ .+|+ +|+.++.+.
T Consensus 171 ~~I~~~~~~~~~--~~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga-~V~~v~~~~ 238 (399)
T PRK05579 171 EEIVAAAERALS--PKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGA-DVTLVSGPV 238 (399)
T ss_pred HHHHHHHHHHhh--hcccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCC-EEEEeCCCc
Confidence 344455554442 23578999998887 3787776444 4687 798887653
No 472
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=22.95 E-value=1.6e+02 Score=26.55 Aligned_cols=30 Identities=13% Similarity=0.227 Sum_probs=20.1
Q ss_pred ccCHHHH---HHHHcCCCeEEEEeCCHHHHHHhh
Q 030031 110 GHGLPGI---FACLEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 110 GtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l~ 140 (184)
|.|.+|+ .+...|. +|+++|.+++-++.+.
T Consensus 7 GlGyvGl~~A~~lA~G~-~VigvD~d~~kv~~l~ 39 (388)
T PRK15057 7 GTGYVGLSNGLLIAQNH-EVVALDILPSRVAMLN 39 (388)
T ss_pred CCCHHHHHHHHHHHhCC-cEEEEECCHHHHHHHH
Confidence 4454553 2222465 7999999999988665
No 473
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=22.83 E-value=1.8e+02 Score=24.68 Aligned_cols=42 Identities=24% Similarity=0.348 Sum_probs=25.8
Q ss_pred CCCCCeEEEEcccc-CHHHHHHHH-cCCCeEEEEeCCHHHHHHh
Q 030031 98 SFSGKRVLELGCGH-GLPGIFACL-EGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 98 ~~~gkrVLELGcGt-Gl~gi~aa~-~ga~~V~~tD~s~~~l~~l 139 (184)
..++.+||=.|+|. |...+.+++ .|++.|++++-+++..+.+
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~ 203 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFA 203 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH
Confidence 35678888877642 333333333 5775588898877665544
No 474
>PRK07774 short chain dehydrogenase; Provisional
Probab=22.67 E-value=2.6e+02 Score=22.16 Aligned_cols=39 Identities=28% Similarity=0.311 Sum_probs=26.2
Q ss_pred CCCCeEEEEccccCHHHHHH----HHcCCCeEEEEeCCHHHHHHh
Q 030031 99 FSGKRVLELGCGHGLPGIFA----CLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi~a----a~~ga~~V~~tD~s~~~l~~l 139 (184)
++++++|=.|+. |.+|..+ +..|+ +|+.+|.+++-++.+
T Consensus 4 ~~~k~vlItGas-g~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~ 46 (250)
T PRK07774 4 FDDKVAIVTGAA-GGIGQAYAEALAREGA-SVVVADINAEGAERV 46 (250)
T ss_pred cCCCEEEEECCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 577889988854 4555433 34676 799999887655433
No 475
>PRK07478 short chain dehydrogenase; Provisional
Probab=22.60 E-value=3.2e+02 Score=21.83 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=28.8
Q ss_pred CCCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 98 SFSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
.+++|++|=.|++.|+-.- .+++.|+ +|++++.+++-++.+
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~ 46 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQL 46 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 3578899988887665432 3445687 799999887766544
No 476
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=22.51 E-value=4.3e+02 Score=22.25 Aligned_cols=43 Identities=28% Similarity=0.315 Sum_probs=29.6
Q ss_pred CCCCCCeEEEEccccCHHHH--HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 97 ISFSGKRVLELGCGHGLPGI--FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 97 ~~~~gkrVLELGcGtGl~gi--~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
...++++||=+|+|.---++ .++..|..+|+..+.+.+-.+.+
T Consensus 119 ~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l 163 (278)
T PRK00258 119 VDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEEL 163 (278)
T ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence 35788999999997222222 23456866899999997766544
No 477
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=22.35 E-value=1.1e+02 Score=26.52 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=28.5
Q ss_pred CCCCeEEEEccc-cCHHHH-HHHHcCCCeEEEEeCCHH
Q 030031 99 FSGKRVLELGCG-HGLPGI-FACLEGAAVIHFQEFNAE 134 (184)
Q Consensus 99 ~~gkrVLELGcG-tGl~gi-~aa~~ga~~V~~tD~s~~ 134 (184)
++..+|+=+|+| .|-+.. ++++.|..+++.+|.+.-
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v 65 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDV 65 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccc
Confidence 567789999987 566665 677888889999999853
No 478
>PRK06194 hypothetical protein; Provisional
Probab=22.02 E-value=2.8e+02 Score=22.65 Aligned_cols=40 Identities=18% Similarity=0.290 Sum_probs=26.6
Q ss_pred CCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 99 FSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
++++++|=.|++.|+-.- .++..|+ +|+.+|.+.+.++.+
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~ 46 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRA 46 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHH
Confidence 567889988866554332 2344677 799999887665543
No 479
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=21.99 E-value=1.8e+02 Score=23.54 Aligned_cols=35 Identities=26% Similarity=0.232 Sum_probs=24.5
Q ss_pred CCCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCH
Q 030031 98 SFSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNA 133 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~ 133 (184)
.+++|++|=.|++.|+-.- .+++.|+ +|++++.+.
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~ 42 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAE 42 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCch
Confidence 4678999999987775443 3445677 688887653
No 480
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=21.93 E-value=1.7e+02 Score=28.53 Aligned_cols=45 Identities=20% Similarity=0.177 Sum_probs=30.2
Q ss_pred CeEEEEccccCHHHHH--HH-HcCCCeEEEEeCCHHHHHHhhHHHHHHhC
Q 030031 102 KRVLELGCGHGLPGIF--AC-LEGAAVIHFQEFNAEVLRYLTIPNVIANV 148 (184)
Q Consensus 102 krVLELGcGtGl~gi~--aa-~~ga~~V~~tD~s~~~l~~l~~~Nv~~N~ 148 (184)
++|-=+|+|+=--+|. ++ ..|. .|+..|.+++.++... ..+..++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~-~V~l~d~~~~~l~~~~-~~~~~~l 352 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGI-PVRIKDINPQGINNAL-KYAWKLL 352 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHH-HHHHHHH
Confidence 4788888875333342 23 4677 7999999999988664 4454433
No 481
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.92 E-value=1e+02 Score=28.20 Aligned_cols=34 Identities=9% Similarity=0.026 Sum_probs=24.3
Q ss_pred CCCeEEEEccc-cCHHHHHHHHcCCCeEEEEeCCHH
Q 030031 100 SGKRVLELGCG-HGLPGIFACLEGAAVIHFQEFNAE 134 (184)
Q Consensus 100 ~gkrVLELGcG-tGl~gi~aa~~ga~~V~~tD~s~~ 134 (184)
++++|+=+|.| +|.-...++..|+ +|+.+|..+.
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~g~-~v~v~D~~~~ 39 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQNKY-DVIVYDDLKA 39 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhCCC-EEEEECCCCC
Confidence 57899999998 5555554444676 7999996543
No 482
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=21.75 E-value=2.7e+02 Score=22.05 Aligned_cols=40 Identities=25% Similarity=0.349 Sum_probs=25.8
Q ss_pred CCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 99 FSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 99 ~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
++++++|=.|++.|+-.. .+++.|+ +|+.+|.+....+.+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~ 43 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNREAAEKV 43 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHH
Confidence 367889988876544332 2334566 799999887665543
No 483
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=21.72 E-value=68 Score=28.34 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=20.6
Q ss_pred CCCeEEEEccccCHHHHHHHHcCCCeEEEEeCC
Q 030031 100 SGKRVLELGCGHGLPGIFACLEGAAVIHFQEFN 132 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s 132 (184)
....|-|+|||-+-++. .... +|+..|+-
T Consensus 180 ~~~vIaD~GCGEakiA~---~~~~-kV~SfDL~ 208 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---SERH-KVHSFDLV 208 (325)
T ss_pred CceEEEecccchhhhhh---cccc-ceeeeeee
Confidence 34579999999987764 3333 67887774
No 484
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=21.67 E-value=97 Score=31.13 Aligned_cols=41 Identities=24% Similarity=0.275 Sum_probs=35.8
Q ss_pred CCCCCeEEEEccccCHHHHHHHHcCCCeEEEEeCCHHHHHHh
Q 030031 98 SFSGKRVLELGCGHGLPGIFACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
.++++.+||=-+|-|.+-+.++++|- .|+++|++|-+...+
T Consensus 88 ~~~~~~~lDPfAG~GSIPlEAlRLG~-~v~AvelnPvAylfL 128 (875)
T COG1743 88 PFEGPKLLDPFAGGGSIPLEALRLGL-EVVAVELNPVAYLFL 128 (875)
T ss_pred cccCCcccccccCCCccchHHHhcCc-eeEEEecccHHHHHH
Confidence 46788999999999999999999996 799999999775433
No 485
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=21.39 E-value=1.1e+02 Score=27.23 Aligned_cols=31 Identities=26% Similarity=0.216 Sum_probs=22.8
Q ss_pred eEEEEcccc-C-HHHHHHHHcCCCeEEEEeCCH
Q 030031 103 RVLELGCGH-G-LPGIFACLEGAAVIHFQEFNA 133 (184)
Q Consensus 103 rVLELGcGt-G-l~gi~aa~~ga~~V~~tD~s~ 133 (184)
+||=+|||+ | -+...+++.|..+++.+|.+.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~ 33 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGK 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 478888884 2 233466778999999999873
No 486
>PRK07576 short chain dehydrogenase; Provisional
Probab=21.16 E-value=3.3e+02 Score=22.16 Aligned_cols=41 Identities=22% Similarity=0.222 Sum_probs=27.5
Q ss_pred CCCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 98 SFSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
.++++++|=.|++.|+-.. .++..|+ +|+++|.+++-++..
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~ 49 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAA 49 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 4678999999965544332 2344677 699999987665543
No 487
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=21.13 E-value=92 Score=29.01 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=22.4
Q ss_pred eEEEEccccCHHHH----HHHHcCC-CeEEEEeCCHHHHHHhh
Q 030031 103 RVLELGCGHGLPGI----FACLEGA-AVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 103 rVLELGcGtGl~gi----~aa~~ga-~~V~~tD~s~~~l~~l~ 140 (184)
+|.=+|+| .+|+ .++..|. .+|+++|.+++-++.+.
T Consensus 3 ~I~ViG~G--yvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~ 43 (473)
T PLN02353 3 KICCIGAG--YVGGPTMAVIALKCPDIEVVVVDISVPRIDAWN 43 (473)
T ss_pred EEEEECCC--HHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHH
Confidence 45555555 4443 3334442 37999999999888653
No 488
>PRK06523 short chain dehydrogenase; Provisional
Probab=21.04 E-value=2.1e+02 Score=23.00 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=24.1
Q ss_pred CCCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCH
Q 030031 98 SFSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNA 133 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~ 133 (184)
.+++++||=.|++.|+-.- .+++.|+ +|++++.++
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~ 43 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSR 43 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCCh
Confidence 4688999999987665442 2344576 688887754
No 489
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=20.97 E-value=2.4e+02 Score=23.69 Aligned_cols=33 Identities=12% Similarity=0.271 Sum_probs=22.1
Q ss_pred eEEEEccccCHHH----HHHHHcCCCeEEEEeCCHHHHHH
Q 030031 103 RVLELGCGHGLPG----IFACLEGAAVIHFQEFNAEVLRY 138 (184)
Q Consensus 103 rVLELGcGtGl~g----i~aa~~ga~~V~~tD~s~~~l~~ 138 (184)
+|-=+|+| .+| ..+++.|. +|++.|.+++.++.
T Consensus 5 kI~VIG~G--~mG~~ia~~la~~g~-~V~~~d~~~~~~~~ 41 (282)
T PRK05808 5 KIGVIGAG--TMGNGIAQVCAVAGY-DVVMVDISDAAVDR 41 (282)
T ss_pred EEEEEccC--HHHHHHHHHHHHCCC-ceEEEeCCHHHHHH
Confidence 45555665 444 34455676 79999999998864
No 490
>PF08515 TGF_beta_GS: Transforming growth factor beta type I GS-motif; InterPro: IPR003605 Transforming growth factor beta (TGF-beta) is a member of a large family of secreted growth factors of central importance in eukaryotic development and homeostasis. Members of this family, which includes the activins, inhibins and bone morphogenic proteins (BMPs), bind to receptors that consist of two transmembrane serine/threonine (Ser/Thr) kinases called the type I and type II receptors. Type II activates Type I upon formation of the ligand receptor complex by multiply phosphorylating the GS domain, a short (~30 residues), highly conserved regulatory sequence just N-terminal to the kinase domain on the cytoplasmic side of the receptor. The GS domain is found only in the type I receptor family and is named for the TTSGSGSG sequence at its core. At least three, and perhaps four to five of the serines and threonines in the GS domain, must be phosphorylated to fully activate TbetaR-1 []. The GS domain forms a helix-loop-helix structure in which the sites of activating phosphorylation are situated in a loop known as the GS loop. One key role for phosphorylation is to block the adoption of an inactivating configuration by the GS domain [].; GO: 0004675 transmembrane receptor protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0016020 membrane; PDB: 3MY0_H 3Q4U_B 3H9R_A 3MTF_B 3OOM_A 3KCF_C 3FAA_A 1IAS_A 1PY5_A 2X7O_C ....
Probab=20.70 E-value=47 Score=19.25 Aligned_cols=10 Identities=50% Similarity=0.992 Sum_probs=7.1
Q ss_pred ccccCHHHHH
Q 030031 108 GCGHGLPGIF 117 (184)
Q Consensus 108 GcGtGl~gi~ 117 (184)
|+|+|++.+.
T Consensus 14 GSGSGlplLv 23 (29)
T PF08515_consen 14 GSGSGLPLLV 23 (29)
T ss_dssp TSSSSS-HHH
T ss_pred CCCCCchhhh
Confidence 7899988764
No 491
>PRK07677 short chain dehydrogenase; Provisional
Probab=20.58 E-value=2.7e+02 Score=22.29 Aligned_cols=38 Identities=24% Similarity=0.147 Sum_probs=24.3
Q ss_pred CCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHHHHh
Q 030031 101 GKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVLRYL 139 (184)
Q Consensus 101 gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l~~l 139 (184)
+|++|=.|++.|+-.. .+++.|+ +|+++|.+++.++.+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~ 41 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEA 41 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 4678878886664332 2344677 788888877655443
No 492
>PRK06841 short chain dehydrogenase; Provisional
Probab=20.53 E-value=3.4e+02 Score=21.60 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=26.8
Q ss_pred CCCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHH
Q 030031 98 SFSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEV 135 (184)
Q Consensus 98 ~~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~ 135 (184)
.+++++||=.|++.|+-.- .+++.|+ +|++++.++..
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~~~ 51 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSEDV 51 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHH
Confidence 4678999999987766443 3445687 69999988654
No 493
>PRK08628 short chain dehydrogenase; Provisional
Probab=20.29 E-value=2.9e+02 Score=22.17 Aligned_cols=39 Identities=21% Similarity=0.149 Sum_probs=25.6
Q ss_pred CCCCCCeEEEEccccCHHHH---HHHHcCCCeEEEEeCCHHHH
Q 030031 97 ISFSGKRVLELGCGHGLPGI---FACLEGAAVIHFQEFNAEVL 136 (184)
Q Consensus 97 ~~~~gkrVLELGcGtGl~gi---~aa~~ga~~V~~tD~s~~~l 136 (184)
..++++++|=.|++.|+-.- .+++.|+ +|+.++.++..+
T Consensus 3 ~~l~~~~ilItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~ 44 (258)
T PRK08628 3 LNLKDKVVIVTGGASGIGAAISLRLAEEGA-IPVIFGRSAPDD 44 (258)
T ss_pred CCcCCCEEEEeCCCChHHHHHHHHHHHcCC-cEEEEcCChhhH
Confidence 35788899989876554222 3345677 578788776554
No 494
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=20.08 E-value=1.3e+02 Score=27.48 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=23.3
Q ss_pred CeEEEEccccCHHHHHHH---HcCCCeEEEEeCCHHHHHHhh
Q 030031 102 KRVLELGCGHGLPGIFAC---LEGAAVIHFQEFNAEVLRYLT 140 (184)
Q Consensus 102 krVLELGcGtGl~gi~aa---~~ga~~V~~tD~s~~~l~~l~ 140 (184)
.+|-=+ |.|.+|+-++ ..+ .+|++.|.+++.++.+.
T Consensus 7 mkI~vI--GlGyvGlpmA~~la~~-~~V~g~D~~~~~ve~l~ 45 (425)
T PRK15182 7 VKIAII--GLGYVGLPLAVEFGKS-RQVVGFDVNKKRILELK 45 (425)
T ss_pred CeEEEE--CcCcchHHHHHHHhcC-CEEEEEeCCHHHHHHHH
Confidence 344444 5555665333 235 58999999999888654
No 495
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=20.06 E-value=1.3e+02 Score=26.98 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=23.2
Q ss_pred CCCeEEEEccccCHHHHHHHHcC-CCeEEE--EeCCHHH
Q 030031 100 SGKRVLELGCGHGLPGIFACLEG-AAVIHF--QEFNAEV 135 (184)
Q Consensus 100 ~gkrVLELGcGtGl~gi~aa~~g-a~~V~~--tD~s~~~ 135 (184)
..+.|+.||||.=.+...+...+ ...+.+ +|+++-+
T Consensus 87 ~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~ 125 (335)
T KOG2918|consen 87 GKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVV 125 (335)
T ss_pred CceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHH
Confidence 34589999999987776665544 334444 5555433
Done!