BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030034
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6FLP6|SPC42_CANGA Spindle pole body component SPC42 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=SPC42 PE=3 SV=1
Length = 359
Score = 37.4 bits (85), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 51/106 (48%), Gaps = 15/106 (14%)
Query: 13 SARGFRDGPR----PVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQ 68
S F DG PV GL + EEI++QR ++ +IS+N+ + H Q
Sbjct: 35 SGLNFNDGYSGINPPVYKNGLHSNLDDDKLVPEEIKLQRTVINDLISQNKE-LQTTVHTQ 93
Query: 69 RELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASE 114
RE EI RL II + RA ++ + +R KLE ELR SE
Sbjct: 94 RE------EIERLNIIIGQFRAKLTKYS--VMNR--KLEDELRGSE 129
>sp|Q86VS8|HOOK3_HUMAN Protein Hook homolog 3 OS=Homo sapiens GN=HOOK3 PE=1 SV=2
Length = 718
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 6/153 (3%)
Query: 11 PDSARGFRDGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRE 70
P+S G R L F +++ I+ E+ + ISE R D+ T L E
Sbjct: 236 PNSPAGRRHLQLQTQLEQLQEETFRLEAAKDDYRIRCEELEKEISELRQQNDELTTLADE 295
Query: 71 LTASKDEIHRL---GQIIPKLRADKEAHTRELFDRG-LKLEVEL--RASEPVRAEVVQLR 124
+ KDEI L + KL E++ ++L D G L+ +V+L + V L
Sbjct: 296 AQSLKDEIDVLRHSSDKVSKLEGQVESYKKKLEDLGDLRRQVKLLEEKNTMYMQNTVSLE 355
Query: 125 AEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ 157
E++K N++R +L T + + + NRL E+K+
Sbjct: 356 EELRKANAARSQLETYKRQVVELQNRLSEESKK 388
>sp|Q8BUK6|HOOK3_MOUSE Protein Hook homolog 3 OS=Mus musculus GN=Hook3 PE=1 SV=2
Length = 718
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 13/174 (7%)
Query: 11 PDSARGFRDGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRE 70
P+S G R L F +++ I+ E+ + ISE R D+ T L E
Sbjct: 236 PNSPAGRRHLQLQTQLEQLQEETFRLEAAKDDYRIRCEELEKEISELRQQNDELTTLADE 295
Query: 71 LTASKDEIHRL---GQIIPKLRADKEAHTRELFDRG-LKLEVEL--RASEPVRAEVVQLR 124
+ KDEI L + KL E++ ++L D G L+ +V+L + V L
Sbjct: 296 AQSLKDEIDVLRHSSDKVSKLEGQVESYKKKLEDLGDLRRQVKLLEEKNTMYMQNTVSLE 355
Query: 125 AEVQKLNSSRQELTTQIKGLTKDVNRLEAENK-------QLIAMRADIDGIRSE 171
E++K N++R +L T + + + NRL E+K + ++ +DG++ E
Sbjct: 356 EELRKANAARGQLETYKRQVVELQNRLSDESKKADKLDFEYKRLKEKVDGLQKE 409
>sp|Q0A7Z2|SYS_ALHEH Serine--tRNA ligase OS=Alkalilimnicola ehrlichei (strain MLHE-1)
GN=serS PE=3 SV=1
Length = 424
Score = 33.5 bits (75), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 87 KLRADKEAHTRELFDRGLKLEVE-LRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLT 145
KLR D E R L RG +L+V RA + R E+ E+Q ++R + Q K
Sbjct: 6 KLRQDPEGVARALARRGYRLDVAHYRALDERRRELQVRTQELQNERNTRSKGIGQAKARG 65
Query: 146 KDVNRLEAE----NKQLIAMRADIDGIRSEL 172
+D+ L+AE +QL A + ++ ++ EL
Sbjct: 66 EDIEPLKAEVADLGRQLEAAKGELQAVQDEL 96
>sp|B2TUI5|SYS_SHIB3 Serine--tRNA ligase OS=Shigella boydii serotype 18 (strain CDC
3083-94 / BS512) GN=serS PE=3 SV=1
Length = 430
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTK 146
LR + +A +L RG KL+V+ + R +V+Q++ E +Q +SR + Q K +
Sbjct: 7 LRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGE 66
Query: 147 DVNRLEAE----NKQLIAMRADIDGIRSEL 172
D+ L E ++L A +A++D +++E+
Sbjct: 67 DIESLRLEVNKLGEELDAAKAELDALQAEI 96
>sp|Q3TVA9|CC136_MOUSE Coiled-coil domain-containing protein 136 OS=Mus musculus
GN=Ccdc136 PE=2 SV=2
Length = 1136
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 75/144 (52%), Gaps = 17/144 (11%)
Query: 11 PDSARGFRDGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRE 70
P+ F + VLT+ A + ++ EE ++Q+R MHR++++ + ++ ++E
Sbjct: 838 PEDLEHFEETVAKVLTKLQAVKALYQVSQEEHCQLQQR-MHRLLAKQKELTEELQCCEKE 896
Query: 71 LTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRAS-----------EPVRAE 119
L ++ + LG+ +P ++DK +EL + +L+++ +AS E + +
Sbjct: 897 L---RECMESLGKPLPP-QSDK-CEIKELQTKLRELQLQYQASMDEQGRLLAVQEQLEGQ 951
Query: 120 VVQLRAEVQKLNSSRQELTTQIKG 143
+ + E+++L +R ++++ +G
Sbjct: 952 LQCCQEELRQLKENRPSISSEARG 975
>sp|A1JMG0|SYS_YERE8 Serine--tRNA ligase OS=Yersinia enterocolitica serotype O:8 /
biotype 1B (strain 8081) GN=serS PE=3 SV=1
Length = 430
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTK 146
LR + +A +L RG KL+VE+ + R +V+Q+ E +Q +SR +L K +
Sbjct: 7 LRNELDAVAEKLARRGFKLDVEMLRQQEERRKVLQVETESLQAERNSRSKLIGAAKARGE 66
Query: 147 DVNRLEAE----NKQLIAMRADIDGIRSEL 172
D+ L E ++L A +A++D +++E+
Sbjct: 67 DIEPLRLEVNELGEKLDAAKAELDKLQNEI 96
>sp|Q3Z3M7|SYS_SHISS Serine--tRNA ligase OS=Shigella sonnei (strain Ss046) GN=serS PE=3
SV=1
Length = 430
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTK 146
LR + +A +L RG KL+V+ + R +V+Q++ E +Q +SR + Q K +
Sbjct: 7 LRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGE 66
Query: 147 DVNRLEAE----NKQLIAMRADIDGIRSEL 172
D+ L E ++L A +A++D +++E+
Sbjct: 67 DIEPLRLEVNKLGEELDAAKAELDALQAEI 96
>sp|P0A8L4|SYS_SHIFL Serine--tRNA ligase OS=Shigella flexneri GN=serS PE=3 SV=1
Length = 430
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTK 146
LR + +A +L RG KL+V+ + R +V+Q++ E +Q +SR + Q K +
Sbjct: 7 LRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGE 66
Query: 147 DVNRLEAE----NKQLIAMRADIDGIRSEL 172
D+ L E ++L A +A++D +++E+
Sbjct: 67 DIEPLRLEVNKLGEELDAAKAELDALQAEI 96
>sp|Q0T8M9|SYS_SHIF8 Serine--tRNA ligase OS=Shigella flexneri serotype 5b (strain 8401)
GN=serS PE=3 SV=1
Length = 430
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTK 146
LR + +A +L RG KL+V+ + R +V+Q++ E +Q +SR + Q K +
Sbjct: 7 LRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGE 66
Query: 147 DVNRLEAE----NKQLIAMRADIDGIRSEL 172
D+ L E ++L A +A++D +++E+
Sbjct: 67 DIEPLRLEVNKLGEELDAAKAELDALQAEI 96
>sp|Q323L0|SYS_SHIBS Serine--tRNA ligase OS=Shigella boydii serotype 4 (strain Sb227)
GN=serS PE=3 SV=1
Length = 430
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTK 146
LR + +A +L RG KL+V+ + R +V+Q++ E +Q +SR + Q K +
Sbjct: 7 LRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGE 66
Query: 147 DVNRLEAE----NKQLIAMRADIDGIRSEL 172
D+ L E ++L A +A++D +++E+
Sbjct: 67 DIEPLRLEVNKLGEELDAAKAELDALQAEI 96
>sp|Q1RE21|SYS_ECOUT Serine--tRNA ligase OS=Escherichia coli (strain UTI89 / UPEC)
GN=serS PE=3 SV=1
Length = 430
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTK 146
LR + +A +L RG KL+V+ + R +V+Q++ E +Q +SR + Q K +
Sbjct: 7 LRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGE 66
Query: 147 DVNRLEAE----NKQLIAMRADIDGIRSEL 172
D+ L E ++L A +A++D +++E+
Sbjct: 67 DIEPLRLEVNKLGEELDAAKAELDALQAEI 96
>sp|B1LJX0|SYS_ECOSM Serine--tRNA ligase OS=Escherichia coli (strain SMS-3-5 / SECEC)
GN=serS PE=3 SV=1
Length = 430
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTK 146
LR + +A +L RG KL+V+ + R +V+Q++ E +Q +SR + Q K +
Sbjct: 7 LRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGE 66
Query: 147 DVNRLEAE----NKQLIAMRADIDGIRSEL 172
D+ L E ++L A +A++D +++E+
Sbjct: 67 DIEPLRLEVNKLGEELDAAKAELDALQAEI 96
>sp|B6I8W4|SYS_ECOSE Serine--tRNA ligase OS=Escherichia coli (strain SE11) GN=serS PE=3
SV=1
Length = 430
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTK 146
LR + +A +L RG KL+V+ + R +V+Q++ E +Q +SR + Q K +
Sbjct: 7 LRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGE 66
Query: 147 DVNRLEAE----NKQLIAMRADIDGIRSEL 172
D+ L E ++L A +A++D +++E+
Sbjct: 67 DIEPLRLEVNKLGEELDAAKAELDALQAEI 96
>sp|B7NAP4|SYS_ECOLU Serine--tRNA ligase OS=Escherichia coli O17:K52:H18 (strain UMN026
/ ExPEC) GN=serS PE=3 SV=1
Length = 430
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTK 146
LR + +A +L RG KL+V+ + R +V+Q++ E +Q +SR + Q K +
Sbjct: 7 LRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGE 66
Query: 147 DVNRLEAE----NKQLIAMRADIDGIRSEL 172
D+ L E ++L A +A++D +++E+
Sbjct: 67 DIEPLRLEVNKLGEELDAAKAELDALQAEI 96
>sp|P0A8L1|SYS_ECOLI Serine--tRNA ligase OS=Escherichia coli (strain K12) GN=serS PE=1
SV=1
Length = 430
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTK 146
LR + +A +L RG KL+V+ + R +V+Q++ E +Q +SR + Q K +
Sbjct: 7 LRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGE 66
Query: 147 DVNRLEAE----NKQLIAMRADIDGIRSEL 172
D+ L E ++L A +A++D +++E+
Sbjct: 67 DIEPLRLEVNKLGEELDAAKAELDALQAEI 96
>sp|B1IWN0|SYS_ECOLC Serine--tRNA ligase OS=Escherichia coli (strain ATCC 8739 / DSM
1576 / Crooks) GN=serS PE=3 SV=1
Length = 430
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTK 146
LR + +A +L RG KL+V+ + R +V+Q++ E +Q +SR + Q K +
Sbjct: 7 LRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGE 66
Query: 147 DVNRLEAE----NKQLIAMRADIDGIRSEL 172
D+ L E ++L A +A++D +++E+
Sbjct: 67 DIEPLRLEVNKLGEELDAAKAELDALQAEI 96
>sp|P0A8L2|SYS_ECOL6 Serine--tRNA ligase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=serS PE=3 SV=1
Length = 430
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTK 146
LR + +A +L RG KL+V+ + R +V+Q++ E +Q +SR + Q K +
Sbjct: 7 LRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGE 66
Query: 147 DVNRLEAE----NKQLIAMRADIDGIRSEL 172
D+ L E ++L A +A++D +++E+
Sbjct: 67 DIEPLRLEVNKLGEELDAAKAELDALQAEI 96
>sp|Q0TJF7|SYS_ECOL5 Serine--tRNA ligase OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=serS PE=3 SV=1
Length = 430
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTK 146
LR + +A +L RG KL+V+ + R +V+Q++ E +Q +SR + Q K +
Sbjct: 7 LRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGE 66
Query: 147 DVNRLEAE----NKQLIAMRADIDGIRSEL 172
D+ L E ++L A +A++D +++E+
Sbjct: 67 DIEPLRLEVNKLGEELDAAKAELDALQAEI 96
>sp|A1A9D6|SYS_ECOK1 Serine--tRNA ligase OS=Escherichia coli O1:K1 / APEC GN=serS PE=3
SV=1
Length = 430
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTK 146
LR + +A +L RG KL+V+ + R +V+Q++ E +Q +SR + Q K +
Sbjct: 7 LRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGE 66
Query: 147 DVNRLEAE----NKQLIAMRADIDGIRSEL 172
D+ L E ++L A +A++D +++E+
Sbjct: 67 DIEPLRLEVNKLGEELDAAKAELDALQAEI 96
>sp|A7ZYJ7|SYS_ECOHS Serine--tRNA ligase OS=Escherichia coli O9:H4 (strain HS) GN=serS
PE=3 SV=1
Length = 430
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTK 146
LR + +A +L RG KL+V+ + R +V+Q++ E +Q +SR + Q K +
Sbjct: 7 LRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGE 66
Query: 147 DVNRLEAE----NKQLIAMRADIDGIRSEL 172
D+ L E ++L A +A++D +++E+
Sbjct: 67 DIEPLRLEVNKLGEELDAAKAELDALQAEI 96
>sp|B1X833|SYS_ECODH Serine--tRNA ligase OS=Escherichia coli (strain K12 / DH10B)
GN=serS PE=3 SV=1
Length = 430
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTK 146
LR + +A +L RG KL+V+ + R +V+Q++ E +Q +SR + Q K +
Sbjct: 7 LRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGE 66
Query: 147 DVNRLEAE----NKQLIAMRADIDGIRSEL 172
D+ L E ++L A +A++D +++E+
Sbjct: 67 DIEPLRLEVNKLGEELDAAKAELDALQAEI 96
>sp|C4ZQ19|SYS_ECOBW Serine--tRNA ligase OS=Escherichia coli (strain K12 / MC4100 /
BW2952) GN=serS PE=3 SV=1
Length = 430
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTK 146
LR + +A +L RG KL+V+ + R +V+Q++ E +Q +SR + Q K +
Sbjct: 7 LRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGE 66
Query: 147 DVNRLEAE----NKQLIAMRADIDGIRSEL 172
D+ L E ++L A +A++D +++E+
Sbjct: 67 DIEPLRLEVNKLGEELDAAKAELDALQAEI 96
>sp|B7M821|SYS_ECO8A Serine--tRNA ligase OS=Escherichia coli O8 (strain IAI1) GN=serS
PE=3 SV=1
Length = 430
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTK 146
LR + +A +L RG KL+V+ + R +V+Q++ E +Q +SR + Q K +
Sbjct: 7 LRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGE 66
Query: 147 DVNRLEAE----NKQLIAMRADIDGIRSEL 172
D+ L E ++L A +A++D +++E+
Sbjct: 67 DIEPLRLEVNKLGEELDAAKAELDALQAEI 96
>sp|B7MRV6|SYS_ECO81 Serine--tRNA ligase OS=Escherichia coli O81 (strain ED1a) GN=serS
PE=3 SV=1
Length = 430
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTK 146
LR + +A +L RG KL+V+ + R +V+Q++ E +Q +SR + Q K +
Sbjct: 7 LRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGE 66
Query: 147 DVNRLEAE----NKQLIAMRADIDGIRSEL 172
D+ L E ++L A +A++D +++E+
Sbjct: 67 DIEPLRLEVNKLGEELDAAKAELDALQAEI 96
>sp|B7NM82|SYS_ECO7I Serine--tRNA ligase OS=Escherichia coli O7:K1 (strain IAI39 /
ExPEC) GN=serS PE=3 SV=1
Length = 430
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTK 146
LR + +A +L RG KL+V+ + R +V+Q++ E +Q +SR + Q K +
Sbjct: 7 LRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGE 66
Query: 147 DVNRLEAE----NKQLIAMRADIDGIRSEL 172
D+ L E ++L A +A++D +++E+
Sbjct: 67 DIEPLRLEVNKLGEELDAAKAELDALQAEI 96
>sp|B5YT28|SYS_ECO5E Serine--tRNA ligase OS=Escherichia coli O157:H7 (strain EC4115 /
EHEC) GN=serS PE=3 SV=1
Length = 430
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTK 146
LR + +A +L RG KL+V+ + R +V+Q++ E +Q +SR + Q K +
Sbjct: 7 LRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGE 66
Query: 147 DVNRLEAE----NKQLIAMRADIDGIRSEL 172
D+ L E ++L A +A++D +++E+
Sbjct: 67 DIEPLRLEVNKLGEELDAAKAELDALQAEI 96
>sp|P0A8L3|SYS_ECO57 Serine--tRNA ligase OS=Escherichia coli O157:H7 GN=serS PE=3 SV=1
Length = 430
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTK 146
LR + +A +L RG KL+V+ + R +V+Q++ E +Q +SR + Q K +
Sbjct: 7 LRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGE 66
Query: 147 DVNRLEAE----NKQLIAMRADIDGIRSEL 172
D+ L E ++L A +A++D +++E+
Sbjct: 67 DIEPLRLEVNKLGEELDAAKAELDALQAEI 96
>sp|B7LD85|SYS_ECO55 Serine--tRNA ligase OS=Escherichia coli (strain 55989 / EAEC)
GN=serS PE=3 SV=1
Length = 430
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTK 146
LR + +A +L RG KL+V+ + R +V+Q++ E +Q +SR + Q K +
Sbjct: 7 LRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGE 66
Query: 147 DVNRLEAE----NKQLIAMRADIDGIRSEL 172
D+ L E ++L A +A++D +++E+
Sbjct: 67 DIEPLRLEVNKLGEELDAAKAELDALQAEI 96
>sp|B7MHK5|SYS_ECO45 Serine--tRNA ligase OS=Escherichia coli O45:K1 (strain S88 / ExPEC)
GN=serS PE=3 SV=1
Length = 430
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTK 146
LR + +A +L RG KL+V+ + R +V+Q++ E +Q +SR + Q K +
Sbjct: 7 LRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGE 66
Query: 147 DVNRLEAE----NKQLIAMRADIDGIRSEL 172
D+ L E ++L A +A++D +++E+
Sbjct: 67 DIEPLRLEVNKLGEELDAAKAELDALQAEI 96
>sp|B7UMY4|SYS_ECO27 Serine--tRNA ligase OS=Escherichia coli O127:H6 (strain E2348/69 /
EPEC) GN=serS PE=3 SV=1
Length = 430
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTK 146
LR + +A +L RG KL+V+ + R +V+Q++ E +Q +SR + Q K +
Sbjct: 7 LRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGE 66
Query: 147 DVNRLEAE----NKQLIAMRADIDGIRSEL 172
D+ L E ++L A +A++D +++E+
Sbjct: 67 DIEPLRLEVNKLGEELDAAKAELDALQAEI 96
>sp|A7ZJW2|SYS_ECO24 Serine--tRNA ligase OS=Escherichia coli O139:H28 (strain E24377A /
ETEC) GN=serS PE=3 SV=1
Length = 430
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTK 146
LR + +A +L RG KL+V+ + R +V+Q++ E +Q +SR + Q K +
Sbjct: 7 LRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGE 66
Query: 147 DVNRLEAE----NKQLIAMRADIDGIRSEL 172
D+ L E ++L A +A++D +++E+
Sbjct: 67 DIEPLRLEVNKLGEELDAAKAELDALQAEI 96
>sp|B7LN61|SYS_ESCF3 Serine--tRNA ligase OS=Escherichia fergusonii (strain ATCC 35469 /
DSM 13698 / CDC 0568-73) GN=serS PE=3 SV=1
Length = 430
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTK 146
LR + +A +L RG KL+V+ + R +V+Q++ E +Q +SR + Q K +
Sbjct: 7 LRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGE 66
Query: 147 DVNRLEAE----NKQLIAMRADIDGIRSEL 172
D+ L E ++L A +A++D +++E+
Sbjct: 67 DIEPLRLEVNKLGEELDAAKAELDALQAEI 96
>sp|Q32E12|SYS_SHIDS Serine--tRNA ligase OS=Shigella dysenteriae serotype 1 (strain
Sd197) GN=serS PE=3 SV=1
Length = 430
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTK 146
LR + +A +L RG KL+V+ + R +V+Q++ E +Q +SR + Q K +
Sbjct: 7 LRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGE 66
Query: 147 DVNRLEAE----NKQLIAMRADIDGIRSEL 172
D+ L E ++L A +A++D +++E+
Sbjct: 67 DIEPLRLEVNKLGEELDAAKAELDALQAEI 96
>sp|Q9P0K7|RAI14_HUMAN Ankycorbin OS=Homo sapiens GN=RAI14 PE=1 SV=2
Length = 980
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 105 KLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRL 151
KL+ ++ E V +EVVQ+R+EV ++ ++ + T +K ++VN L
Sbjct: 806 KLKESVKEKEKVHSEVVQIRSEVSQVKREKENIQTLLKSKEQEVNEL 852
>sp|Q9P219|DAPLE_HUMAN Protein Daple OS=Homo sapiens GN=CCDC88C PE=1 SV=3
Length = 2028
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 15/117 (12%)
Query: 42 EIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFD 101
++E ++R++HR + + + + L+REL ++E RL + + L E
Sbjct: 608 QLEFEKRQLHRDLEQAKEKGERAEKLERELQRLQEENGRLARKVTSLETATE-------- 659
Query: 102 RGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158
K+E S+ ++ E LR + L Q ++ Q++GL +D +L+AEN +L
Sbjct: 660 ---KVEALEHESQGLQLENRTLRKSLDTL----QNVSLQLEGLERDNKQLDAENLEL 709
>sp|Q4QRL3|CC88B_MOUSE Coiled-coil domain-containing protein 88B OS=Mus musculus GN=Ccdc88b
PE=1 SV=2
Length = 1481
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 85 IPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGL 144
+ + R + + EL R +LE+E RA ++++ QLR Q+L+ S LTTQ + L
Sbjct: 1180 VSRERGELQGERGELRSRLARLELE-RAQLEIQSQ--QLRESNQQLDLSACRLTTQCELL 1236
Query: 145 TKDVNRLEAENKQLIAMRADIDGIRSELVEARFEIRYFL 183
T+ + E EN+QL+A + EL+E E R L
Sbjct: 1237 TQLRSAQEEENRQLLAEVQALSRENRELLERSLESRDHL 1275
>sp|A1A5D9|BICR2_HUMAN Bicaudal D-related protein 2 OS=Homo sapiens GN=CCDC64B PE=2 SV=2
Length = 508
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 7/133 (5%)
Query: 25 LTRGLAP----MHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHR 80
L RGLA + LE ++E R ++ SE + D R L+ ++ R
Sbjct: 103 LRRGLAARGAEWEARAVELEGDVEALRAQLGEQRSEQQ---DSGRERARALSELSEQNLR 159
Query: 81 LGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQ 140
L Q + + ++ REL + + + A +R + L+ E Q L S RQ+L Q
Sbjct: 160 LSQQLAQASQTEQELQRELDALRGQCQAQALAGAELRTRLESLQGENQMLQSRRQDLEAQ 219
Query: 141 IKGLTKDVNRLEA 153
I+GL ++V + E
Sbjct: 220 IRGLREEVEKGEG 232
>sp|A7MSW8|SYS_VIBHB Serine--tRNA ligase OS=Vibrio harveyi (strain ATCC BAA-1116 /
BB120) GN=serS PE=3 SV=1
Length = 435
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 88 LRADKEAHTRELFDRGLKLEVE-LRASEPVRAEVVQLRAEVQKLNSSRQELTTQI--KGL 144
LR + + +L RG KL+VE +R E R + + EV+ L S+R ++ QI K
Sbjct: 7 LRTELDETAAKLARRGFKLDVETIRKLEEQRKSI---QVEVENLQSTRNSISKQIGQKMA 63
Query: 145 TKDVNRLEAENKQLIAMRADIDGIRSELVEARFEIRYF 182
D E KQ+ + +D+D + EL + ++ F
Sbjct: 64 AGDKEGAEEIKKQIGTLGSDLDAKKVELEQVMAQLDEF 101
>sp|Q87QP1|SYS_VIBPA Serine--tRNA ligase OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=serS PE=3 SV=1
Length = 435
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 88 LRADKEAHTRELFDRGLKLEVE-LRASEPVRAEVVQLRAEVQKLNSSRQELTTQI--KGL 144
LR + + +L RG KL+VE +R E R + + EV+ L S+R ++ QI K
Sbjct: 7 LRTELDETAAKLARRGFKLDVETIRKLEEQRKSI---QVEVENLQSTRNSISKQIGQKMA 63
Query: 145 TKDVNRLEAENKQLIAMRADIDGIRSELVEARFEIRYF 182
D E KQ+ + +D+D + EL + ++ F
Sbjct: 64 AGDKEGAEEIKKQIGTLGSDLDAKKVELEQVMAQLDEF 101
>sp|P21249|ANT1_ONCVO Major antigen OS=Onchocerca volvulus GN=OVT1 PE=2 SV=2
Length = 2022
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 18/156 (11%)
Query: 38 TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTR 97
LE E++ R +H ++ E N LQ EL K +I L L+ KE++
Sbjct: 1101 NLESELDTTRERIH-LLGEQ------NASLQTELNKIKGDIDSLFGENDMLKTAKESNEA 1153
Query: 98 ELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ 157
E+ KL+ + ++ + +LR E +L + +E Q + LT+ V LE+ Q
Sbjct: 1154 EIDRLKQKLQRSIENAKKYSDALDKLRPEYDRLQNLYREKIKQAENLTQAVQDLESRLNQ 1213
Query: 158 -----------LIAMRADIDGIRSELVEARFEIRYF 182
LIA D + +RSE+ + + E+++
Sbjct: 1214 SRRELRDATDKLIASEGDRNALRSEVEKLQHEVQFM 1249
>sp|Q8VD04|GRAP1_MOUSE GRIP1-associated protein 1 OS=Mus musculus GN=Gripap1 PE=1 SV=1
Length = 806
Score = 30.0 bits (66), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 17/138 (12%)
Query: 16 GFRDGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISENRHAID-----DNTHLQRE 70
G D P VL LAPM + L+ E+E RE +++ E ++ + + LQ E
Sbjct: 167 GQGDPPGDVLPTPLAPMPLAEVELKWEME---REEKKLLWEQLQGLESSKQAETSRLQEE 223
Query: 71 LTASKDEIHRLGQIIPKLRADKEAHTRELFD--RGLKLEVELRASEPVRAEVV---QLRA 125
L +++ + + +L+ +KE LF+ R E++ R ++A++ +L+
Sbjct: 224 LAKLSEKLKKKQESFCRLQTEKET----LFNDSRNKIEELQQRKEADLKAQLARTQKLQQ 279
Query: 126 EVQKLNSSRQELTTQIKG 143
E++ N S EL Q +G
Sbjct: 280 ELEAANQSLAELRDQRQG 297
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,407,246
Number of Sequences: 539616
Number of extensions: 2346884
Number of successful extensions: 13005
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 669
Number of HSP's that attempted gapping in prelim test: 11666
Number of HSP's gapped (non-prelim): 1933
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)