Query 030034
Match_columns 184
No_of_seqs 79 out of 81
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 07:29:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030034.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030034hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08317 Spc7: Spc7 kinetochor 97.3 0.021 4.6E-07 50.9 16.7 133 38-170 153-290 (325)
2 PF00038 Filament: Intermediat 96.9 0.096 2.1E-06 45.3 16.0 118 39-156 9-141 (312)
3 PF07798 DUF1640: Protein of u 96.5 0.34 7.4E-06 39.7 15.9 122 50-174 28-156 (177)
4 TIGR02169 SMC_prok_A chromosom 96.4 0.42 9.1E-06 47.3 18.7 48 39-86 292-339 (1164)
5 TIGR02168 SMC_prok_B chromosom 96.3 0.67 1.4E-05 45.6 19.3 6 39-44 703-708 (1179)
6 PF12325 TMF_TATA_bd: TATA ele 96.3 0.071 1.5E-06 42.2 10.3 72 104-178 19-90 (120)
7 TIGR02169 SMC_prok_A chromosom 96.2 0.6 1.3E-05 46.3 18.7 23 50-72 331-353 (1164)
8 TIGR03007 pepcterm_ChnLen poly 96.1 0.77 1.7E-05 42.3 17.5 59 123-181 315-373 (498)
9 PF07888 CALCOCO1: Calcium bin 96.1 0.96 2.1E-05 44.1 18.6 49 38-86 140-188 (546)
10 TIGR02168 SMC_prok_B chromosom 96.0 1.1 2.4E-05 44.1 19.2 7 39-45 675-681 (1179)
11 PF04156 IncA: IncA protein; 95.8 0.71 1.5E-05 37.4 14.3 114 58-171 77-190 (191)
12 PF00038 Filament: Intermediat 95.7 1.2 2.6E-05 38.5 16.5 121 53-179 6-140 (312)
13 PF05701 WEMBL: Weak chloropla 95.3 1.9 4.2E-05 41.1 17.3 66 113-178 283-359 (522)
14 TIGR00606 rad50 rad50. This fa 95.2 2 4.3E-05 45.0 18.5 136 37-175 973-1110(1311)
15 COG4372 Uncharacterized protei 95.2 3.1 6.6E-05 39.8 18.2 109 48-160 109-231 (499)
16 PRK09841 cryptic autophosphory 95.0 0.59 1.3E-05 45.9 13.4 118 57-181 262-388 (726)
17 PF09789 DUF2353: Uncharacteri 95.0 1.5 3.2E-05 40.1 15.1 106 52-157 76-187 (319)
18 PF06818 Fez1: Fez1; InterPro 94.9 0.71 1.5E-05 39.8 12.1 111 64-177 12-152 (202)
19 smart00787 Spc7 Spc7 kinetocho 94.8 3 6.4E-05 37.7 16.9 132 39-170 149-285 (312)
20 PRK02224 chromosome segregatio 94.7 3.7 8E-05 40.5 18.1 80 96-175 629-710 (880)
21 PRK02224 chromosome segregatio 94.7 4.6 9.9E-05 39.9 18.7 84 65-152 209-292 (880)
22 KOG0161 Myosin class II heavy 94.7 2.7 5.8E-05 46.4 18.3 144 40-183 1385-1528(1930)
23 PF08317 Spc7: Spc7 kinetochor 94.7 1.5 3.3E-05 39.1 14.1 87 62-149 156-247 (325)
24 PF07888 CALCOCO1: Calcium bin 94.6 3.3 7.2E-05 40.5 17.0 75 39-113 148-232 (546)
25 PRK03918 chromosome segregatio 94.5 3.7 8E-05 40.3 17.4 60 104-163 224-283 (880)
26 PRK09039 hypothetical protein; 94.3 1.4 3E-05 40.0 13.2 56 37-93 42-98 (343)
27 PHA02562 46 endonuclease subun 94.3 1.8 3.8E-05 40.2 14.1 108 65-173 302-413 (562)
28 PF10174 Cast: RIM-binding pro 94.0 1.8 3.9E-05 43.8 14.4 107 42-157 54-160 (775)
29 PF05701 WEMBL: Weak chloropla 94.0 2 4.2E-05 41.0 14.0 63 114-179 340-409 (522)
30 PF10174 Cast: RIM-binding pro 93.7 2.1 4.5E-05 43.3 14.2 116 55-180 3-138 (775)
31 PF07111 HCR: Alpha helical co 93.5 2.2 4.8E-05 42.9 13.9 135 43-181 68-215 (739)
32 COG1579 Zn-ribbon protein, pos 93.4 5.2 0.00011 35.3 16.1 17 94-110 66-82 (239)
33 PRK11637 AmiB activator; Provi 93.4 6.3 0.00014 36.2 19.1 22 34-55 40-61 (428)
34 TIGR01005 eps_transp_fam exopo 92.5 11 0.00024 36.8 17.6 45 137-181 350-394 (754)
35 KOG0976 Rho/Rac1-interacting s 92.4 7.8 0.00017 40.3 15.9 135 42-176 327-510 (1265)
36 PRK11637 AmiB activator; Provi 92.4 8.8 0.00019 35.2 19.6 28 64-91 91-118 (428)
37 PF13514 AAA_27: AAA domain 92.2 11 0.00025 38.8 17.4 136 44-179 156-326 (1111)
38 TIGR00606 rad50 rad50. This fa 92.1 12 0.00025 39.5 17.5 22 157-178 882-903 (1311)
39 COG1196 Smc Chromosome segrega 92.1 17 0.00036 37.9 18.6 90 62-154 383-475 (1163)
40 KOG4809 Rab6 GTPase-interactin 92.0 5 0.00011 39.7 13.8 120 46-169 329-458 (654)
41 PF15619 Lebercilin: Ciliary p 92.0 6.9 0.00015 33.1 18.3 138 38-179 16-187 (194)
42 TIGR01843 type_I_hlyD type I s 91.8 8.5 0.00018 33.9 18.6 116 59-177 141-267 (423)
43 PF08614 ATG16: Autophagy prot 91.8 1.3 2.8E-05 36.7 8.5 104 35-138 68-171 (194)
44 KOG0250 DNA repair protein RAD 91.7 14 0.0003 39.0 17.2 56 114-172 375-431 (1074)
45 PF12325 TMF_TATA_bd: TATA ele 91.4 2.7 5.8E-05 33.3 9.5 66 112-177 17-82 (120)
46 PF12128 DUF3584: Protein of u 91.3 21 0.00045 37.4 18.2 74 105-180 346-419 (1201)
47 KOG4673 Transcription factor T 91.3 0.86 1.9E-05 46.1 7.9 57 118-174 866-922 (961)
48 PF10473 CENP-F_leu_zip: Leuci 91.2 7.2 0.00016 31.8 15.3 43 49-91 11-53 (140)
49 TIGR01010 BexC_CtrB_KpsE polys 91.1 3.9 8.4E-05 36.4 11.3 129 50-180 156-295 (362)
50 TIGR02680 conserved hypothetic 91.0 24 0.00053 37.6 19.0 22 39-60 747-768 (1353)
51 PF08826 DMPK_coil: DMPK coile 91.0 1.7 3.7E-05 30.9 7.2 40 105-144 5-44 (61)
52 PRK10884 SH3 domain-containing 90.9 4 8.6E-05 34.9 10.7 8 69-76 100-107 (206)
53 PRK11546 zraP zinc resistance 90.7 0.65 1.4E-05 38.0 5.5 52 129-180 62-113 (143)
54 COG1340 Uncharacterized archae 90.6 4 8.7E-05 37.1 11.0 84 97-180 134-224 (294)
55 PRK11519 tyrosine kinase; Prov 90.5 8.3 0.00018 38.0 13.9 113 62-181 267-388 (719)
56 KOG0977 Nuclear envelope prote 90.3 12 0.00026 36.7 14.5 84 70-157 135-222 (546)
57 PF14197 Cep57_CLD_2: Centroso 90.1 4.3 9.4E-05 29.2 8.8 60 115-177 9-68 (69)
58 PRK09039 hypothetical protein; 89.6 16 0.00034 33.3 16.4 50 37-86 49-105 (343)
59 PF10234 Cluap1: Clusterin-ass 89.1 3.1 6.7E-05 37.2 8.9 64 112-175 170-237 (267)
60 PF11932 DUF3450: Protein of u 89.0 11 0.00024 32.2 12.0 37 114-150 80-116 (251)
61 PF12128 DUF3584: Protein of u 88.9 33 0.00072 36.0 17.6 31 147-177 343-373 (1201)
62 KOG0250 DNA repair protein RAD 88.8 26 0.00056 37.1 16.3 61 96-156 740-800 (1074)
63 TIGR03017 EpsF chain length de 88.7 18 0.00039 32.7 15.9 104 65-181 257-360 (444)
64 PF08912 Rho_Binding: Rho Bind 88.6 2.3 5.1E-05 31.1 6.4 49 123-171 1-50 (69)
65 TIGR01000 bacteriocin_acc bact 88.4 21 0.00045 33.0 15.3 21 157-177 237-257 (457)
66 PF07926 TPR_MLP1_2: TPR/MLP1/ 88.1 11 0.00024 29.5 14.6 90 49-152 4-93 (132)
67 KOG0995 Centromere-associated 87.3 14 0.00031 36.5 12.8 86 92-180 240-325 (581)
68 KOG0977 Nuclear envelope prote 87.1 32 0.0007 33.8 17.8 124 39-163 47-200 (546)
69 PF11559 ADIP: Afadin- and alp 87.1 13 0.00028 29.3 13.8 89 50-159 40-128 (151)
70 TIGR01843 type_I_hlyD type I s 87.1 20 0.00044 31.5 17.3 40 118-157 196-235 (423)
71 KOG0933 Structural maintenance 87.0 28 0.00062 36.8 15.2 132 40-174 800-938 (1174)
72 PHA02562 46 endonuclease subun 85.8 30 0.00065 32.1 17.3 45 130-174 304-348 (562)
73 PF12718 Tropomyosin_1: Tropom 85.8 17 0.00036 29.2 13.8 117 66-182 4-123 (143)
74 KOG0999 Microtubule-associated 85.5 42 0.00091 33.8 14.9 109 70-181 58-212 (772)
75 PF09787 Golgin_A5: Golgin sub 85.4 35 0.00075 32.5 16.9 97 52-150 211-313 (511)
76 PF04111 APG6: Autophagy prote 85.3 7.3 0.00016 35.0 9.2 25 66-90 13-37 (314)
77 smart00787 Spc7 Spc7 kinetocho 85.2 29 0.00063 31.4 16.1 89 62-153 151-239 (312)
78 PF09787 Golgin_A5: Golgin sub 85.1 36 0.00077 32.4 15.9 22 158-179 276-297 (511)
79 PF04880 NUDE_C: NUDE protein, 85.1 0.65 1.4E-05 38.9 2.2 35 37-76 17-51 (166)
80 PF10481 CENP-F_N: Cenp-F N-te 83.8 30 0.00065 31.7 12.3 74 104-180 53-126 (307)
81 PF14197 Cep57_CLD_2: Centroso 83.4 14 0.00031 26.5 8.6 48 58-105 1-48 (69)
82 TIGR03794 NHPM_micro_HlyD NHPM 83.1 36 0.00079 30.9 16.7 26 156-181 227-252 (421)
83 PRK10884 SH3 domain-containing 82.8 15 0.00032 31.4 9.6 23 101-126 93-115 (206)
84 PF06810 Phage_GP20: Phage min 82.6 8.4 0.00018 31.4 7.7 63 117-179 12-74 (155)
85 TIGR02231 conserved hypothetic 82.6 19 0.0004 34.0 11.1 39 115-153 128-166 (525)
86 PF05622 HOOK: HOOK protein; 82.6 0.4 8.7E-06 46.9 0.0 114 45-158 271-403 (713)
87 PF10473 CENP-F_leu_zip: Leuci 82.6 25 0.00054 28.7 13.9 45 113-157 47-91 (140)
88 COG3206 GumC Uncharacterized p 82.4 27 0.00058 32.3 11.8 45 137-181 347-391 (458)
89 PF05837 CENP-H: Centromere pr 82.4 10 0.00023 28.9 7.7 63 113-179 12-74 (106)
90 PF02050 FliJ: Flagellar FliJ 82.4 15 0.00033 26.1 11.7 95 67-163 3-97 (123)
91 TIGR00634 recN DNA repair prot 82.1 48 0.001 31.7 14.5 87 89-175 279-365 (563)
92 PRK06569 F0F1 ATP synthase sub 81.7 29 0.00062 28.8 13.2 119 33-169 33-152 (155)
93 PF09730 BicD: Microtubule-ass 81.5 65 0.0014 32.7 15.1 17 163-179 121-137 (717)
94 PF10186 Atg14: UV radiation r 81.5 31 0.00067 29.0 14.9 23 40-62 19-41 (302)
95 PF07106 TBPIP: Tat binding pr 81.5 12 0.00027 30.0 8.3 40 136-177 120-159 (169)
96 PF13514 AAA_27: AAA domain 81.4 71 0.0015 33.1 19.6 132 48-179 666-824 (1111)
97 KOG4674 Uncharacterized conser 81.1 1E+02 0.0022 34.7 17.6 71 40-110 737-807 (1822)
98 PF09730 BicD: Microtubule-ass 81.0 63 0.0014 32.8 14.5 32 34-65 352-383 (717)
99 KOG1962 B-cell receptor-associ 80.6 18 0.00038 31.6 9.4 45 138-182 164-212 (216)
100 COG1340 Uncharacterized archae 80.6 46 0.00099 30.4 12.6 94 76-179 30-123 (294)
101 TIGR02971 heterocyst_DevB ABC 80.5 37 0.00081 29.4 15.8 114 61-181 89-204 (327)
102 PF04156 IncA: IncA protein; 80.0 30 0.00065 27.9 14.7 50 38-87 85-134 (191)
103 PF04728 LPP: Lipoprotein leuc 79.8 13 0.00029 26.1 6.9 24 129-152 7-30 (56)
104 PF07139 DUF1387: Protein of u 79.8 50 0.0011 30.3 12.7 98 50-169 155-256 (302)
105 PF04350 PilO: Pilus assembly 79.7 2.8 6.1E-05 31.9 3.8 43 137-179 4-46 (144)
106 PF10186 Atg14: UV radiation r 79.6 36 0.00078 28.6 17.6 34 114-147 73-106 (302)
107 KOG1029 Endocytic adaptor prot 78.9 35 0.00077 35.5 12.0 83 60-142 435-517 (1118)
108 COG4942 Membrane-bound metallo 78.4 64 0.0014 30.8 18.2 26 152-177 220-245 (420)
109 PF07106 TBPIP: Tat binding pr 78.4 22 0.00049 28.5 8.9 60 117-177 78-137 (169)
110 TIGR02680 conserved hypothetic 78.4 1E+02 0.0022 33.1 19.6 54 113-166 923-976 (1353)
111 PF08614 ATG16: Autophagy prot 78.2 24 0.00052 29.1 9.2 80 89-171 90-173 (194)
112 KOG2629 Peroxisomal membrane a 77.9 18 0.00039 33.1 8.9 73 105-177 119-196 (300)
113 TIGR03017 EpsF chain length de 76.8 40 0.00086 30.5 10.9 33 60-92 169-201 (444)
114 PF05082 Rop-like: Rop-like; 76.7 23 0.0005 25.7 7.5 59 118-179 2-60 (66)
115 TIGR03752 conj_TIGR03752 integ 76.4 32 0.00069 33.3 10.5 38 38-75 63-100 (472)
116 PF04728 LPP: Lipoprotein leuc 76.0 17 0.00036 25.7 6.4 28 122-149 7-34 (56)
117 PF05557 MAD: Mitotic checkpoi 76.0 0.86 1.9E-05 44.7 0.0 23 156-178 257-279 (722)
118 PF13805 Pil1: Eisosome compon 75.9 23 0.0005 31.9 9.0 124 49-181 58-202 (271)
119 PF02403 Seryl_tRNA_N: Seryl-t 75.9 30 0.00064 25.6 11.0 58 88-146 7-64 (108)
120 TIGR01000 bacteriocin_acc bact 75.6 68 0.0015 29.7 18.2 27 155-181 290-316 (457)
121 PF00170 bZIP_1: bZIP transcri 75.3 17 0.00037 24.9 6.4 38 117-154 25-62 (64)
122 PF09728 Taxilin: Myosin-like 75.3 38 0.00083 30.5 10.3 64 116-179 27-90 (309)
123 TIGR00414 serS seryl-tRNA synt 75.3 26 0.00057 32.6 9.5 35 111-145 30-64 (418)
124 PF14735 HAUS4: HAUS augmin-li 75.2 57 0.0012 28.6 14.9 85 93-180 139-226 (238)
125 TIGR03185 DNA_S_dndD DNA sulfu 75.1 51 0.0011 32.1 11.7 81 96-179 204-285 (650)
126 smart00338 BRLZ basic region l 74.8 16 0.00035 25.0 6.2 40 115-154 23-62 (65)
127 KOG0161 Myosin class II heavy 74.6 1.6E+02 0.0034 33.4 18.7 114 39-152 1405-1518(1930)
128 PF02403 Seryl_tRNA_N: Seryl-t 74.3 33 0.00071 25.4 9.0 31 113-143 69-99 (108)
129 PF03962 Mnd1: Mnd1 family; I 74.0 52 0.0011 27.6 11.2 25 64-88 64-88 (188)
130 KOG0288 WD40 repeat protein Ti 73.4 79 0.0017 30.5 12.2 67 96-165 43-109 (459)
131 PF05008 V-SNARE: Vesicle tran 73.3 7.7 0.00017 27.2 4.4 40 118-157 39-79 (79)
132 COG4942 Membrane-bound metallo 73.0 90 0.0019 29.9 15.3 36 51-86 62-97 (420)
133 KOG0982 Centrosomal protein Nu 73.0 96 0.0021 30.2 16.0 140 38-177 219-388 (502)
134 PRK11519 tyrosine kinase; Prov 71.1 96 0.0021 30.7 12.7 13 67-79 279-291 (719)
135 PF11705 RNA_pol_3_Rpc31: DNA- 71.0 15 0.00032 31.4 6.3 36 19-57 33-68 (233)
136 PRK05431 seryl-tRNA synthetase 70.4 34 0.00074 31.9 9.1 37 109-145 26-62 (425)
137 KOG4603 TBP-1 interacting prot 70.3 34 0.00073 29.6 8.2 58 118-176 79-136 (201)
138 PF11180 DUF2968: Protein of u 68.9 76 0.0017 27.4 11.3 84 68-153 95-182 (192)
139 KOG4687 Uncharacterized coiled 68.8 82 0.0018 29.3 10.9 114 47-171 89-226 (389)
140 PF10153 DUF2361: Uncharacteri 68.7 56 0.0012 25.8 10.3 38 43-80 2-39 (114)
141 PF13747 DUF4164: Domain of un 68.5 47 0.001 24.8 8.7 70 78-148 10-83 (89)
142 KOG0980 Actin-binding protein 68.3 1.6E+02 0.0036 31.0 17.6 72 104-175 487-562 (980)
143 KOG4807 F-actin binding protei 68.2 1.2E+02 0.0027 29.5 15.2 50 100-152 438-487 (593)
144 PF08776 VASP_tetra: VASP tetr 67.8 29 0.00064 23.0 5.8 10 165-174 28-37 (40)
145 COG2433 Uncharacterized conser 67.7 84 0.0018 31.7 11.4 26 155-180 473-498 (652)
146 PF07926 TPR_MLP1_2: TPR/MLP1/ 67.2 58 0.0013 25.4 13.4 20 117-136 48-67 (132)
147 COG3524 KpsE Capsule polysacch 67.1 18 0.00039 33.8 6.4 27 153-179 248-274 (372)
148 PF11559 ADIP: Afadin- and alp 67.0 60 0.0013 25.5 13.3 33 49-81 60-92 (151)
149 PF05529 Bap31: B-cell recepto 66.6 47 0.001 27.1 8.3 36 134-172 156-191 (192)
150 PF12329 TMF_DNA_bd: TATA elem 66.3 47 0.001 24.0 8.2 54 87-150 5-58 (74)
151 PF04111 APG6: Autophagy prote 66.2 1E+02 0.0022 27.8 12.8 28 125-152 106-133 (314)
152 PRK07248 hypothetical protein; 65.6 49 0.0011 23.9 7.7 62 113-175 3-78 (87)
153 PRK04778 septation ring format 65.1 1.2E+02 0.0025 29.3 11.7 34 58-91 245-278 (569)
154 PF14966 DNA_repr_REX1B: DNA r 64.9 33 0.00071 26.0 6.5 58 86-144 39-96 (97)
155 PF02183 HALZ: Homeobox associ 64.8 24 0.00051 23.5 5.0 35 114-148 8-42 (45)
156 TIGR03007 pepcterm_ChnLen poly 64.5 1.2E+02 0.0026 28.0 12.7 60 116-175 315-374 (498)
157 PF13935 Ead_Ea22: Ead/Ea22-li 64.4 59 0.0013 25.8 8.2 44 35-78 68-113 (139)
158 PF04012 PspA_IM30: PspA/IM30 64.4 82 0.0018 26.1 15.1 105 37-144 26-131 (221)
159 KOG2264 Exostosin EXT1L [Signa 64.0 40 0.00088 34.1 8.5 65 109-176 84-148 (907)
160 PF06005 DUF904: Protein of un 63.8 51 0.0011 23.9 7.0 42 38-79 8-56 (72)
161 PF10481 CENP-F_N: Cenp-F N-te 63.8 61 0.0013 29.8 8.9 9 50-58 27-35 (307)
162 KOG0964 Structural maintenance 63.6 2.2E+02 0.0047 30.7 15.8 47 40-86 691-744 (1200)
163 cd07627 BAR_Vps5p The Bin/Amph 62.7 92 0.002 26.1 14.6 113 68-180 34-167 (216)
164 PF14662 CCDC155: Coiled-coil 62.7 1E+02 0.0022 26.6 16.5 39 51-89 11-49 (193)
165 PF09755 DUF2046: Uncharacteri 62.6 1.3E+02 0.0028 27.8 17.6 69 32-107 18-90 (310)
166 PF06156 DUF972: Protein of un 62.5 54 0.0012 25.4 7.4 53 97-152 4-56 (107)
167 TIGR03495 phage_LysB phage lys 62.1 85 0.0018 25.5 9.1 67 38-104 23-92 (135)
168 KOG3478 Prefoldin subunit 6, K 62.1 82 0.0018 25.4 11.4 80 97-179 22-113 (120)
169 PF14932 HAUS-augmin3: HAUS au 61.8 87 0.0019 27.2 9.4 98 63-164 69-168 (256)
170 COG0419 SbcC ATPase involved i 61.6 1.9E+02 0.0041 29.4 19.7 15 68-82 500-514 (908)
171 KOG4643 Uncharacterized coiled 61.5 2.4E+02 0.0051 30.4 15.4 132 37-173 180-318 (1195)
172 PF12004 DUF3498: Domain of un 61.5 2.7 5.8E-05 40.6 0.0 29 85-113 424-452 (495)
173 PF05615 THOC7: Tho complex su 61.0 77 0.0017 24.7 9.2 64 113-179 48-111 (139)
174 PF10805 DUF2730: Protein of u 60.8 61 0.0013 24.7 7.4 52 99-151 47-98 (106)
175 PRK10476 multidrug resistance 60.6 1.2E+02 0.0026 26.7 13.2 21 160-180 187-207 (346)
176 TIGR02231 conserved hypothetic 60.5 83 0.0018 29.7 9.7 41 113-153 133-173 (525)
177 PF08826 DMPK_coil: DMPK coile 60.4 58 0.0013 23.1 8.4 54 123-177 6-60 (61)
178 PF09304 Cortex-I_coil: Cortex 60.3 84 0.0018 24.9 9.2 55 118-175 23-77 (107)
179 PF05911 DUF869: Plant protein 60.2 2E+02 0.0043 29.6 12.7 68 84-154 60-135 (769)
180 KOG1853 LIS1-interacting prote 60.2 1.4E+02 0.0031 27.4 15.8 122 38-173 45-181 (333)
181 PF14662 CCDC155: Coiled-coil 60.0 1.1E+02 0.0025 26.3 17.7 106 39-148 20-139 (193)
182 KOG2264 Exostosin EXT1L [Signa 59.7 65 0.0014 32.8 9.0 66 110-178 78-143 (907)
183 PF03962 Mnd1: Mnd1 family; I 58.4 96 0.0021 25.9 8.8 32 62-93 69-100 (188)
184 TIGR03752 conj_TIGR03752 integ 58.2 52 0.0011 31.9 7.9 94 49-148 46-139 (472)
185 TIGR01069 mutS2 MutS2 family p 58.0 1.9E+02 0.0041 29.3 12.2 11 68-78 524-534 (771)
186 PF09726 Macoilin: Transmembra 57.9 2.2E+02 0.0047 28.8 17.4 72 37-108 421-501 (697)
187 PF07445 priB_priC: Primosomal 57.7 69 0.0015 26.5 7.7 62 118-181 102-163 (173)
188 KOG0996 Structural maintenance 57.7 2.9E+02 0.0062 30.2 16.8 85 67-151 477-561 (1293)
189 PRK10361 DNA recombination pro 57.7 1.9E+02 0.0041 28.1 15.9 15 115-129 144-158 (475)
190 PF05010 TACC: Transforming ac 57.7 91 0.002 26.9 8.7 63 76-141 143-205 (207)
191 COG1579 Zn-ribbon protein, pos 57.7 1.4E+02 0.003 26.5 15.3 48 43-90 26-73 (239)
192 PF14916 CCDC92: Coiled-coil d 57.4 27 0.00058 24.9 4.5 36 137-172 1-37 (60)
193 PF08581 Tup_N: Tup N-terminal 57.4 61 0.0013 24.0 6.6 44 38-84 29-72 (79)
194 PF06818 Fez1: Fez1; InterPro 57.2 1.3E+02 0.0028 26.1 10.8 86 76-175 10-106 (202)
195 PF15463 ECM11: Extracellular 56.8 91 0.002 24.7 8.0 50 122-171 84-134 (139)
196 KOG0996 Structural maintenance 56.7 3E+02 0.0065 30.1 15.3 99 49-150 430-532 (1293)
197 PF05266 DUF724: Protein of un 56.4 1.2E+02 0.0027 25.6 10.4 46 128-176 141-186 (190)
198 PRK10246 exonuclease subunit S 56.4 2.6E+02 0.0055 29.2 17.6 49 125-173 829-877 (1047)
199 KOG0982 Centrosomal protein Nu 56.1 1E+02 0.0022 30.0 9.5 41 53-93 330-370 (502)
200 cd00890 Prefoldin Prefoldin is 56.0 49 0.0011 24.6 6.1 42 135-176 2-43 (129)
201 PF05465 Halo_GVPC: Halobacter 55.4 14 0.0003 23.1 2.5 23 158-180 1-23 (32)
202 PRK15396 murein lipoprotein; P 55.3 54 0.0012 24.3 6.0 13 119-131 26-38 (78)
203 PF05103 DivIVA: DivIVA protei 54.9 7.9 0.00017 29.2 1.6 36 40-75 24-59 (131)
204 PF00769 ERM: Ezrin/radixin/mo 54.7 1.4E+02 0.0031 25.9 13.4 52 124-178 67-118 (246)
205 PF05622 HOOK: HOOK protein; 54.6 4.1 8.9E-05 40.0 0.0 74 57-130 234-310 (713)
206 PF12761 End3: Actin cytoskele 54.6 1.2E+02 0.0026 26.2 8.9 23 64-86 98-120 (195)
207 PF00769 ERM: Ezrin/radixin/mo 54.1 1.5E+02 0.0032 25.8 13.3 87 46-153 31-117 (246)
208 PRK09973 putative outer membra 53.9 57 0.0012 24.7 6.0 31 119-149 25-55 (85)
209 PF03915 AIP3: Actin interacti 53.5 1E+02 0.0022 29.4 9.0 111 68-180 150-270 (424)
210 PF07028 DUF1319: Protein of u 53.5 64 0.0014 26.2 6.6 47 132-178 30-82 (126)
211 KOG1853 LIS1-interacting prote 53.3 1.9E+02 0.004 26.7 14.6 112 57-178 15-130 (333)
212 PF06008 Laminin_I: Laminin Do 52.6 1.5E+02 0.0033 25.4 15.1 125 34-174 17-141 (264)
213 PF04420 CHD5: CHD5-like prote 52.5 34 0.00075 27.8 5.1 35 146-180 63-97 (161)
214 COG3883 Uncharacterized protei 52.4 1.4E+02 0.003 27.0 9.2 38 117-154 44-81 (265)
215 PF10168 Nup88: Nuclear pore c 52.0 2.7E+02 0.0059 28.2 15.1 15 84-98 566-580 (717)
216 COG0419 SbcC ATPase involved i 51.7 2.8E+02 0.006 28.2 18.1 63 113-175 286-348 (908)
217 PF09726 Macoilin: Transmembra 51.0 2.8E+02 0.006 28.1 18.4 61 116-176 543-607 (697)
218 PRK13169 DNA replication intia 50.5 1.1E+02 0.0023 24.1 7.3 52 97-151 4-55 (110)
219 KOG0612 Rho-associated, coiled 50.4 3.8E+02 0.0082 29.4 15.4 10 42-51 476-485 (1317)
220 COG4238 Murein lipoprotein [Ce 50.2 46 0.001 25.0 4.9 28 127-154 27-54 (78)
221 KOG3119 Basic region leucine z 50.1 68 0.0015 28.3 6.9 18 161-178 234-251 (269)
222 PLN02678 seryl-tRNA synthetase 50.1 1.4E+02 0.0031 28.4 9.5 26 118-143 40-65 (448)
223 PF13094 CENP-Q: CENP-Q, a CEN 50.1 1.3E+02 0.0028 23.9 8.7 35 134-168 121-155 (160)
224 KOG4360 Uncharacterized coiled 50.0 2.1E+02 0.0046 28.5 10.6 73 48-124 219-291 (596)
225 KOG0612 Rho-associated, coiled 50.0 3.8E+02 0.0083 29.4 14.9 35 115-149 746-780 (1317)
226 PF05478 Prominin: Prominin; 49.9 2.9E+02 0.0063 27.9 12.1 118 42-170 188-327 (806)
227 PF04799 Fzo_mitofusin: fzo-li 49.7 82 0.0018 26.7 7.0 72 53-128 90-161 (171)
228 KOG0971 Microtubule-associated 49.7 3.6E+02 0.0079 29.0 14.5 45 49-93 369-413 (1243)
229 PF05667 DUF812: Protein of un 49.7 2.7E+02 0.0059 27.6 15.7 51 37-87 317-367 (594)
230 PF05557 MAD: Mitotic checkpoi 49.2 5.6 0.00012 39.1 0.0 82 72-154 124-207 (722)
231 PF04201 TPD52: Tumour protein 48.8 1.2E+02 0.0025 25.6 7.7 46 114-162 32-92 (162)
232 PF10146 zf-C4H2: Zinc finger- 48.8 1.8E+02 0.004 25.3 13.4 51 118-171 53-103 (230)
233 COG1730 GIM5 Predicted prefold 48.4 1.5E+02 0.0033 24.3 11.6 36 58-93 9-44 (145)
234 PF06785 UPF0242: Uncharacteri 48.3 2.5E+02 0.0054 26.7 14.3 65 44-108 95-162 (401)
235 KOG0964 Structural maintenance 48.2 3.9E+02 0.0084 28.9 14.2 139 41-182 674-821 (1200)
236 KOG4571 Activating transcripti 48.2 53 0.0012 30.1 6.0 47 46-92 246-292 (294)
237 PRK06800 fliH flagellar assemb 47.7 1.2E+02 0.0026 26.7 7.8 27 114-140 48-74 (228)
238 PF08581 Tup_N: Tup N-terminal 47.5 1.1E+02 0.0025 22.5 10.1 47 113-159 6-52 (79)
239 PF07794 DUF1633: Protein of u 47.4 37 0.00081 33.8 5.2 47 97-146 593-639 (790)
240 PRK15396 murein lipoprotein; P 47.2 1.1E+02 0.0024 22.7 6.6 38 115-152 29-66 (78)
241 KOG0933 Structural maintenance 47.1 3.6E+02 0.0078 29.2 12.3 96 77-175 770-869 (1174)
242 PHA02414 hypothetical protein 46.7 96 0.0021 24.6 6.4 73 91-170 1-78 (111)
243 PRK12704 phosphodiesterase; Pr 46.5 2.8E+02 0.0061 26.8 13.4 24 151-174 112-135 (520)
244 PRK00888 ftsB cell division pr 46.5 37 0.00081 26.0 4.2 35 112-146 28-62 (105)
245 smart00806 AIP3 Actin interact 46.4 2.8E+02 0.0061 26.7 13.8 116 68-183 154-277 (426)
246 PF03961 DUF342: Protein of un 46.2 2E+02 0.0044 26.7 9.7 16 68-83 340-355 (451)
247 PF04880 NUDE_C: NUDE protein, 46.1 17 0.00037 30.5 2.4 44 91-137 4-47 (166)
248 PF07139 DUF1387: Protein of u 45.8 2.5E+02 0.0053 25.9 11.4 98 38-148 175-275 (302)
249 TIGR03185 DNA_S_dndD DNA sulfu 45.7 3E+02 0.0065 26.9 15.0 78 59-148 388-465 (650)
250 PF04977 DivIC: Septum formati 45.4 51 0.0011 22.5 4.4 30 115-144 21-50 (80)
251 PRK13729 conjugal transfer pil 45.2 64 0.0014 31.3 6.4 41 115-155 80-120 (475)
252 TIGR01808 CM_M_hiGC-arch monof 45.2 69 0.0015 22.9 5.1 34 114-147 3-36 (74)
253 TIGR03319 YmdA_YtgF conserved 44.7 3E+02 0.0065 26.6 17.3 54 99-152 99-152 (514)
254 PF14257 DUF4349: Domain of un 44.6 79 0.0017 27.0 6.3 45 94-142 149-193 (262)
255 PF01920 Prefoldin_2: Prefoldi 43.8 98 0.0021 22.2 5.9 25 157-181 63-87 (106)
256 PRK05431 seryl-tRNA synthetase 43.6 1.5E+02 0.0033 27.7 8.4 16 114-129 45-60 (425)
257 PF06156 DUF972: Protein of un 43.4 1.3E+02 0.0028 23.3 6.7 42 135-179 11-52 (107)
258 PRK06285 chorismate mutase; Pr 43.3 1.3E+02 0.0029 22.2 7.7 35 113-147 9-43 (96)
259 PRK14127 cell division protein 43.1 1E+02 0.0022 24.1 6.2 62 42-110 31-101 (109)
260 PF09969 DUF2203: Uncharacteri 43.0 1.2E+02 0.0025 23.9 6.6 67 48-114 6-77 (120)
261 PF11932 DUF3450: Protein of u 43.0 2.1E+02 0.0046 24.4 14.0 50 118-167 56-105 (251)
262 TIGR02473 flagell_FliJ flagell 42.9 1.4E+02 0.0031 22.4 12.0 95 68-163 19-113 (141)
263 TIGR01005 eps_transp_fam exopo 42.9 3.4E+02 0.0074 26.7 17.1 54 123-176 343-396 (754)
264 KOG2077 JNK/SAPK-associated pr 42.8 1.5E+02 0.0032 30.2 8.5 76 45-126 298-379 (832)
265 PF10018 Med4: Vitamin-D-recep 42.8 1.9E+02 0.004 23.9 8.1 19 123-141 45-63 (188)
266 PRK15178 Vi polysaccharide exp 42.7 1.1E+02 0.0024 29.3 7.4 54 57-110 236-295 (434)
267 PLN02320 seryl-tRNA synthetase 42.6 3.2E+02 0.007 26.7 10.7 28 116-143 98-125 (502)
268 COG2433 Uncharacterized conser 42.5 3.8E+02 0.0083 27.2 12.0 74 38-112 419-492 (652)
269 PF05700 BCAS2: Breast carcino 42.4 2.1E+02 0.0046 24.2 9.4 32 54-85 135-166 (221)
270 PRK13922 rod shape-determining 41.9 1.3E+02 0.0029 25.7 7.4 37 134-170 71-107 (276)
271 TIGR01807 CM_P2 chorismate mut 41.6 87 0.0019 22.1 5.2 34 114-147 2-35 (76)
272 PF10226 DUF2216: Uncharacteri 41.5 2.4E+02 0.0052 24.5 10.3 28 113-140 103-130 (195)
273 TIGR01805 CM_mono_grmpos monof 41.5 91 0.002 22.2 5.3 34 114-147 2-35 (81)
274 smart00338 BRLZ basic region l 41.4 1.1E+02 0.0024 20.8 5.5 32 47-78 32-63 (65)
275 PF10498 IFT57: Intra-flagella 41.2 3E+02 0.0064 25.6 13.4 75 99-173 253-345 (359)
276 COG1382 GimC Prefoldin, chaper 41.0 1.9E+02 0.0041 23.2 8.2 71 102-175 28-110 (119)
277 PF14257 DUF4349: Domain of un 40.8 2E+02 0.0044 24.5 8.3 69 112-181 126-194 (262)
278 PLN02678 seryl-tRNA synthetase 40.7 1.7E+02 0.0038 27.9 8.4 30 100-129 32-65 (448)
279 KOG4673 Transcription factor T 40.6 4.5E+02 0.0098 27.5 14.0 46 63-110 424-469 (961)
280 PF10498 IFT57: Intra-flagella 40.4 1E+02 0.0022 28.6 6.7 73 75-148 197-275 (359)
281 TIGR03689 pup_AAA proteasome A 40.4 50 0.0011 32.0 4.9 40 44-83 4-43 (512)
282 PF07439 DUF1515: Protein of u 40.4 1.9E+02 0.0041 23.1 7.4 64 65-128 11-74 (112)
283 TIGR03794 NHPM_micro_HlyD NHPM 40.1 2.9E+02 0.0063 25.1 14.0 17 156-172 234-250 (421)
284 PRK11199 tyrA bifunctional cho 40.0 1.6E+02 0.0035 26.8 7.9 62 113-174 5-80 (374)
285 PF14282 FlxA: FlxA-like prote 39.6 1.2E+02 0.0027 23.0 6.1 18 93-110 18-35 (106)
286 PF07200 Mod_r: Modifier of ru 39.5 1.8E+02 0.0039 22.6 9.6 41 46-86 32-72 (150)
287 PF05377 FlaC_arch: Flagella a 38.5 46 0.001 23.4 3.2 19 160-178 11-29 (55)
288 COG5178 PRP8 U5 snRNP spliceos 38.5 29 0.00062 38.0 3.1 32 15-46 6-41 (2365)
289 PF08898 DUF1843: Domain of un 38.4 66 0.0014 22.5 4.0 36 140-175 15-50 (53)
290 PRK12704 phosphodiesterase; Pr 38.4 3.8E+02 0.0082 26.0 17.4 54 99-152 105-158 (520)
291 KOG2391 Vacuolar sorting prote 38.4 2E+02 0.0042 27.2 8.2 66 85-150 212-278 (365)
292 PRK10929 putative mechanosensi 38.3 5.4E+02 0.012 27.7 16.2 51 127-180 260-310 (1109)
293 COG3352 FlaC Putative archaeal 38.2 2.4E+02 0.0053 23.7 10.2 81 95-177 45-129 (157)
294 TIGR02894 DNA_bind_RsfA transc 37.9 1.8E+02 0.0039 24.5 7.2 56 50-106 99-154 (161)
295 PF12777 MT: Microtubule-bindi 37.8 1.3E+02 0.0028 27.1 6.9 67 111-177 214-284 (344)
296 KOG4657 Uncharacterized conser 37.8 3E+02 0.0066 24.7 11.5 76 37-113 18-98 (246)
297 PLN03229 acetyl-coenzyme A car 37.6 4.9E+02 0.011 27.0 16.8 70 38-111 459-545 (762)
298 cd00890 Prefoldin Prefoldin is 37.6 1.4E+02 0.0031 22.1 6.1 38 131-168 5-42 (129)
299 KOG0995 Centromere-associated 37.3 4.4E+02 0.0096 26.4 15.6 120 39-172 226-362 (581)
300 TIGR02971 heterocyst_DevB ABC 37.2 2.7E+02 0.0059 24.0 11.6 15 116-130 109-123 (327)
301 PF07200 Mod_r: Modifier of ru 36.8 2E+02 0.0044 22.4 12.9 67 71-144 22-88 (150)
302 PF10211 Ax_dynein_light: Axon 36.8 2.5E+02 0.0054 23.4 14.2 65 114-180 123-187 (189)
303 PRK11578 macrolide transporter 36.5 2.2E+02 0.0049 25.2 8.1 21 160-180 162-182 (370)
304 PF11598 COMP: Cartilage oligo 36.5 1.3E+02 0.0029 20.2 5.2 23 158-180 17-39 (45)
305 KOG1510 RNA polymerase II holo 36.4 1.4E+02 0.0029 24.7 6.1 74 70-157 64-137 (139)
306 PF05761 5_nucleotid: 5' nucle 36.2 1.4E+02 0.003 28.5 7.1 23 157-179 363-385 (448)
307 PRK07857 hypothetical protein; 36.1 87 0.0019 24.5 4.8 38 110-147 27-64 (106)
308 TIGR02977 phageshock_pspA phag 35.9 2.7E+02 0.0058 23.5 14.0 106 38-143 28-145 (219)
309 PF08232 Striatin: Striatin fa 35.7 82 0.0018 25.1 4.7 43 75-121 10-52 (134)
310 PF13094 CENP-Q: CENP-Q, a CEN 35.6 2.3E+02 0.0049 22.5 7.6 74 51-145 16-89 (160)
311 PF15070 GOLGA2L5: Putative go 35.5 4.7E+02 0.01 26.1 14.3 13 130-142 179-191 (617)
312 COG3879 Uncharacterized protei 35.2 2.3E+02 0.0049 25.4 7.8 31 122-152 54-84 (247)
313 PF01920 Prefoldin_2: Prefoldi 35.1 1.7E+02 0.0036 20.9 10.4 37 113-149 64-100 (106)
314 KOG4010 Coiled-coil protein TP 35.0 1.2E+02 0.0025 26.6 5.8 45 115-162 48-107 (208)
315 COG0497 RecN ATPase involved i 34.9 4.7E+02 0.01 26.0 14.1 74 102-175 288-361 (557)
316 KOG4674 Uncharacterized conser 34.6 7.5E+02 0.016 28.3 16.0 141 34-181 20-178 (1822)
317 KOG2391 Vacuolar sorting prote 34.6 3.8E+02 0.0083 25.4 9.4 49 46-94 223-271 (365)
318 COG0172 SerS Seryl-tRNA synthe 34.0 4.3E+02 0.0094 25.4 10.1 23 120-142 38-60 (429)
319 PF10205 KLRAQ: Predicted coil 33.7 2.3E+02 0.005 22.1 9.0 46 103-151 28-73 (102)
320 PRK10698 phage shock protein P 33.6 3.1E+02 0.0066 23.5 14.0 86 59-144 49-146 (222)
321 PF12777 MT: Microtubule-bindi 33.5 2.1E+02 0.0045 25.8 7.4 34 118-151 249-282 (344)
322 PF15035 Rootletin: Ciliary ro 33.4 2.9E+02 0.0063 23.2 11.3 54 96-149 59-119 (182)
323 PF09311 Rab5-bind: Rabaptin-l 33.1 50 0.0011 27.2 3.2 54 119-172 118-174 (181)
324 PF06005 DUF904: Protein of un 33.0 1.9E+02 0.0041 20.9 8.8 25 58-82 14-38 (72)
325 TIGR00998 8a0101 efflux pump m 32.9 3.2E+02 0.0069 23.5 11.2 17 39-55 78-94 (334)
326 PF02841 GBP_C: Guanylate-bind 32.9 3.4E+02 0.0073 23.8 13.2 15 161-175 282-296 (297)
327 PF13815 Dzip-like_N: Iguana/D 32.7 1.7E+02 0.0037 22.4 5.9 25 130-154 71-95 (118)
328 PF07321 YscO: Type III secret 32.6 2.8E+02 0.0061 22.7 9.4 78 74-151 30-107 (152)
329 PRK00409 recombination and DNA 32.5 5.5E+02 0.012 26.1 12.6 32 62-93 523-554 (782)
330 PRK00888 ftsB cell division pr 32.4 1.4E+02 0.003 22.9 5.3 32 38-69 31-62 (105)
331 PF15294 Leu_zip: Leucine zipp 32.3 3.9E+02 0.0084 24.3 10.4 84 92-175 84-209 (278)
332 KOG3478 Prefoldin subunit 6, K 32.2 2.6E+02 0.0056 22.6 6.9 41 115-155 9-52 (120)
333 PRK13824 replication initiatio 31.8 3.5E+02 0.0076 25.4 8.9 78 95-173 147-233 (404)
334 KOG2129 Uncharacterized conser 31.8 5.1E+02 0.011 25.5 10.7 34 90-123 154-191 (552)
335 PRK06975 bifunctional uroporph 31.5 2.8E+02 0.006 27.5 8.5 41 67-107 344-384 (656)
336 PLN02939 transferase, transfer 31.4 6.7E+02 0.014 26.8 12.6 52 91-145 254-306 (977)
337 PHA01750 hypothetical protein 31.4 1.3E+02 0.0029 22.2 4.8 35 114-148 38-72 (75)
338 PF10191 COG7: Golgi complex c 31.3 1.8E+02 0.0039 29.4 7.3 42 138-179 83-124 (766)
339 PF07716 bZIP_2: Basic region 31.3 1.6E+02 0.0034 19.5 5.5 29 117-145 24-52 (54)
340 PF09744 Jnk-SapK_ap_N: JNK_SA 31.2 3E+02 0.0066 22.7 12.6 33 32-64 28-66 (158)
341 PF03938 OmpH: Outer membrane 31.2 2.5E+02 0.0054 21.7 7.1 7 142-148 86-92 (158)
342 PF13815 Dzip-like_N: Iguana/D 31.1 1.3E+02 0.0027 23.1 5.0 28 120-147 82-109 (118)
343 PF13851 GAS: Growth-arrest sp 31.1 3.2E+02 0.007 23.0 18.4 123 44-177 44-171 (201)
344 PF07989 Microtub_assoc: Micro 30.9 1.4E+02 0.0031 21.6 4.9 45 38-82 25-70 (75)
345 PF14988 DUF4515: Domain of un 30.9 3.4E+02 0.0073 23.1 17.9 135 36-174 20-198 (206)
346 PF03954 Lectin_N: Hepatic lec 30.6 1.3E+02 0.0029 24.7 5.2 26 123-148 78-103 (138)
347 TIGR00634 recN DNA repair prot 30.4 5E+02 0.011 24.9 12.5 42 96-137 324-365 (563)
348 COG1842 PspA Phage shock prote 30.3 3.7E+02 0.0079 23.4 15.8 76 37-112 27-103 (225)
349 PF02050 FliJ: Flagellar FliJ 30.3 2E+02 0.0042 20.2 11.6 88 40-134 4-96 (123)
350 COG4238 Murein lipoprotein [Ce 30.2 2.4E+02 0.0052 21.2 6.0 41 117-157 24-64 (78)
351 PF13870 DUF4201: Domain of un 30.0 3E+02 0.0064 22.2 13.8 120 48-179 42-161 (177)
352 PF07851 TMPIT: TMPIT-like pro 29.9 4E+02 0.0086 24.7 8.7 80 98-179 1-84 (330)
353 PTZ00454 26S protease regulato 29.9 1.7E+02 0.0036 27.2 6.4 50 34-83 15-64 (398)
354 PRK07075 isochorismate-pyruvat 29.8 2.5E+02 0.0053 21.2 6.5 41 107-147 4-44 (101)
355 PF06103 DUF948: Bacterial pro 29.8 2.1E+02 0.0046 20.5 7.3 50 115-164 37-86 (90)
356 PRK09841 cryptic autophosphory 29.6 5.7E+02 0.012 25.4 11.3 21 154-174 337-357 (726)
357 PLN03229 acetyl-coenzyme A car 29.5 3.5E+02 0.0075 28.0 8.9 36 137-172 509-544 (762)
358 TIGR01730 RND_mfp RND family e 29.5 3.4E+02 0.0074 22.8 8.1 20 160-179 113-132 (322)
359 PF03245 Phage_lysis: Bacterio 29.5 2.6E+02 0.0056 21.9 6.6 42 116-157 12-53 (125)
360 PF07324 DGCR6: DiGeorge syndr 29.4 3.7E+02 0.0081 23.2 8.4 90 34-126 60-152 (196)
361 PF08700 Vps51: Vps51/Vps67; 29.3 2E+02 0.0044 20.0 7.1 51 38-88 30-84 (87)
362 PF00170 bZIP_1: bZIP transcri 29.0 1.9E+02 0.0041 19.6 6.0 32 50-81 28-59 (64)
363 PF01576 Myosin_tail_1: Myosin 28.9 19 0.0004 36.7 0.0 47 42-88 329-375 (859)
364 PF08172 CASP_C: CASP C termin 28.8 1.4E+02 0.0031 26.2 5.5 45 59-107 90-134 (248)
365 PRK13169 DNA replication intia 28.7 2.9E+02 0.0062 21.7 6.7 41 136-179 12-52 (110)
366 COG1382 GimC Prefoldin, chaper 28.6 1.9E+02 0.0042 23.1 5.7 29 115-143 10-38 (119)
367 COG2919 Septum formation initi 28.4 2.1E+02 0.0046 22.0 5.9 36 56-91 51-86 (117)
368 PRK09973 putative outer membra 28.3 2.5E+02 0.0055 21.3 6.0 38 115-152 28-65 (85)
369 PF06419 COG6: Conserved oligo 28.3 4.7E+02 0.01 25.7 9.4 41 110-150 37-77 (618)
370 PRK05771 V-type ATP synthase s 27.9 1.7E+02 0.0038 28.4 6.4 32 118-149 93-124 (646)
371 PF09798 LCD1: DNA damage chec 27.8 2.5E+02 0.0054 28.4 7.5 64 82-151 3-66 (654)
372 PF14723 SSFA2_C: Sperm-specif 27.6 4E+02 0.0086 22.9 10.5 26 124-149 144-169 (179)
373 KOG1962 B-cell receptor-associ 27.5 4.3E+02 0.0092 23.2 10.5 44 115-158 162-205 (216)
374 PF05531 NPV_P10: Nucleopolyhe 27.3 2.5E+02 0.0054 20.8 5.7 29 120-148 6-34 (75)
375 PRK11020 hypothetical protein; 27.2 3.1E+02 0.0067 22.1 6.6 19 116-134 36-54 (118)
376 PF05700 BCAS2: Breast carcino 27.1 3.9E+02 0.0084 22.6 9.5 71 104-177 139-210 (221)
377 KOG3990 Uncharacterized conser 27.1 4.8E+02 0.01 24.0 8.5 27 118-144 266-293 (305)
378 PF09486 HrpB7: Bacterial type 27.0 3.7E+02 0.008 22.3 14.4 123 50-179 10-137 (158)
379 TIGR00414 serS seryl-tRNA synt 26.8 4.8E+02 0.01 24.4 8.8 27 115-141 73-99 (418)
380 PF14357 DUF4404: Domain of un 26.7 82 0.0018 23.3 3.1 34 117-150 3-36 (85)
381 PF01017 STAT_alpha: STAT prot 26.4 3.7E+02 0.0079 22.1 7.5 39 116-154 59-97 (182)
382 TIGR01791 CM_archaeal chorisma 26.3 2.4E+02 0.0052 20.0 8.4 34 114-147 2-35 (83)
383 KOG0614 cGMP-dependent protein 26.2 1.8E+02 0.004 29.5 6.2 54 97-153 20-73 (732)
384 PRK09239 chorismate mutase; Pr 26.0 1.8E+02 0.0039 22.2 5.0 35 113-147 12-46 (104)
385 PF10704 DUF2508: Protein of u 25.8 73 0.0016 22.6 2.6 23 159-181 15-37 (71)
386 PRK10476 multidrug resistance 25.7 4.6E+02 0.01 23.0 16.3 21 153-173 187-207 (346)
387 smart00503 SynN Syntaxin N-ter 25.6 2.6E+02 0.0057 20.2 11.1 63 114-179 42-112 (117)
388 PRK10361 DNA recombination pro 25.5 6.4E+02 0.014 24.6 17.3 17 130-146 104-120 (475)
389 COG3206 GumC Uncharacterized p 25.5 5.4E+02 0.012 23.8 11.7 56 116-171 333-388 (458)
390 PF08657 DASH_Spc34: DASH comp 25.4 3.2E+02 0.0069 24.3 7.1 41 47-87 179-219 (259)
391 PF07321 YscO: Type III secret 25.4 3.8E+02 0.0082 22.0 13.4 70 74-143 65-134 (152)
392 PRK04778 septation ring format 25.3 6.3E+02 0.014 24.4 17.5 42 113-154 378-419 (569)
393 PF09006 Surfac_D-trimer: Lung 25.1 1.1E+02 0.0024 20.8 3.3 21 159-179 2-22 (46)
394 COG3923 PriC Primosomal replic 25.1 3.9E+02 0.0085 22.9 7.2 44 45-88 113-166 (175)
395 PF08172 CASP_C: CASP C termin 25.0 1.7E+02 0.0038 25.7 5.3 14 134-147 88-101 (248)
396 KOG2077 JNK/SAPK-associated pr 24.8 3.4E+02 0.0073 27.8 7.7 104 56-177 264-378 (832)
397 PRK10803 tol-pal system protei 24.7 1.6E+02 0.0035 25.7 5.0 23 135-157 57-79 (263)
398 KOG4005 Transcription factor X 24.7 3.5E+02 0.0077 24.6 7.2 64 90-164 93-156 (292)
399 PF12998 ING: Inhibitor of gro 24.6 2.7E+02 0.0058 19.9 9.1 94 61-156 7-103 (105)
400 KOG4593 Mitotic checkpoint pro 24.4 8E+02 0.017 25.3 17.9 36 144-179 263-298 (716)
401 COG3166 PilN Tfp pilus assembl 24.3 1.7E+02 0.0037 25.2 5.0 39 140-178 56-94 (206)
402 PF14767 RPA_interact_M: Repli 24.2 1.1E+02 0.0024 22.7 3.5 24 160-183 44-69 (83)
403 PRK00106 hypothetical protein; 24.2 7E+02 0.015 24.6 17.1 52 99-150 120-171 (535)
404 PF05302 DUF720: Protein of un 24.1 1.9E+02 0.0041 23.6 4.9 40 46-85 58-97 (128)
405 PF15290 Syntaphilin: Golgi-lo 23.8 5.3E+02 0.011 23.9 8.2 75 40-114 81-169 (305)
406 KOG2441 mRNA splicing factor/p 23.8 4E+02 0.0086 26.0 7.7 89 15-105 216-329 (506)
407 KOG0962 DNA repair protein RAD 23.5 1E+03 0.022 26.3 15.8 125 44-174 250-374 (1294)
408 PF10018 Med4: Vitamin-D-recep 23.4 4.2E+02 0.0091 21.8 7.1 23 91-113 40-62 (188)
409 PF09311 Rab5-bind: Rabaptin-l 23.3 92 0.002 25.7 3.1 131 39-173 13-151 (181)
410 PF15070 GOLGA2L5: Putative go 23.3 7.6E+02 0.016 24.7 18.1 38 46-83 99-136 (617)
411 TIGR00998 8a0101 efflux pump m 23.2 4.8E+02 0.01 22.4 16.4 40 37-76 83-122 (334)
412 PRK03598 putative efflux pump 23.1 5E+02 0.011 22.6 12.3 64 39-105 79-142 (331)
413 PF04799 Fzo_mitofusin: fzo-li 22.9 2.6E+02 0.0057 23.7 5.8 35 82-116 108-142 (171)
414 KOG3119 Basic region leucine z 22.9 3.6E+02 0.0078 23.8 6.9 54 104-157 201-254 (269)
415 PF07544 Med9: RNA polymerase 22.8 1.6E+02 0.0034 21.5 4.0 46 134-179 23-75 (83)
416 PRK11281 hypothetical protein; 22.7 9.8E+02 0.021 25.8 14.4 51 127-180 280-330 (1113)
417 PRK13182 racA polar chromosome 22.5 4.5E+02 0.0097 22.0 7.1 39 92-130 90-130 (175)
418 PF05266 DUF724: Protein of un 22.5 4.8E+02 0.01 22.0 10.7 57 124-180 123-183 (190)
419 COG5185 HEC1 Protein involved 22.4 8E+02 0.017 24.6 15.2 75 105-179 324-433 (622)
420 PF13747 DUF4164: Domain of un 22.4 3.3E+02 0.0072 20.2 7.9 58 95-152 9-66 (89)
421 PRK13455 F0F1 ATP synthase sub 22.2 4.3E+02 0.0093 21.4 9.6 17 88-104 55-71 (184)
422 COG4372 Uncharacterized protei 22.1 7.5E+02 0.016 24.2 18.3 56 92-147 184-239 (499)
423 KOG0962 DNA repair protein RAD 22.1 1.1E+03 0.024 26.1 14.5 95 67-161 824-928 (1294)
424 PF13600 DUF4140: N-terminal d 21.9 2.4E+02 0.0052 20.6 4.9 34 116-149 68-101 (104)
425 PF13851 GAS: Growth-arrest sp 21.9 4.9E+02 0.011 21.9 13.0 96 63-169 28-127 (201)
426 PF10805 DUF2730: Protein of u 21.8 3.6E+02 0.0079 20.4 6.9 36 117-152 34-71 (106)
427 TIGR00293 prefoldin, archaeal 21.7 3.3E+02 0.0072 20.5 5.7 22 119-140 7-28 (126)
428 PRK11020 hypothetical protein; 21.5 3.7E+02 0.008 21.7 6.0 33 150-182 25-57 (118)
429 PHA00489 scaffolding protein 21.4 2.7E+02 0.0059 21.7 5.1 36 120-155 29-64 (101)
430 cd07651 F-BAR_PombeCdc15_like 21.3 5E+02 0.011 21.8 14.7 32 50-81 62-94 (236)
431 KOG4343 bZIP transcription fac 21.2 97 0.0021 31.0 3.2 36 48-83 309-344 (655)
432 KOG2991 Splicing regulator [RN 21.1 6.7E+02 0.014 23.2 8.5 68 102-179 237-308 (330)
433 PHA03386 P10 fibrous body prot 21.0 4E+02 0.0088 20.7 6.4 42 120-168 7-48 (94)
434 PRK00409 recombination and DNA 21.0 8.9E+02 0.019 24.7 14.7 61 40-100 508-568 (782)
435 PF04899 MbeD_MobD: MbeD/MobD 20.9 3.3E+02 0.0072 19.7 5.3 36 116-151 33-68 (70)
436 PF02183 HALZ: Homeobox associ 20.9 2.6E+02 0.0057 18.5 5.5 24 116-139 17-40 (45)
437 PF09486 HrpB7: Bacterial type 20.9 4.9E+02 0.011 21.6 16.2 52 125-179 93-144 (158)
438 TIGR01069 mutS2 MutS2 family p 20.9 9E+02 0.019 24.6 11.8 39 41-79 504-542 (771)
439 KOG0976 Rho/Rac1-interacting s 20.9 1.1E+03 0.023 25.5 16.6 25 55-79 120-144 (1265)
440 PF05308 Mito_fiss_reg: Mitoch 20.8 92 0.002 27.6 2.8 33 61-94 115-147 (253)
441 COG4396 Mu-like prophage host- 20.8 4.5E+02 0.0098 22.2 6.6 65 75-139 17-83 (170)
442 PF12999 PRKCSH-like: Glucosid 20.8 5.3E+02 0.011 21.9 7.2 18 134-151 155-172 (176)
443 COG5509 Uncharacterized small 20.7 1.5E+02 0.0033 21.5 3.4 23 34-56 25-47 (65)
444 PF09789 DUF2353: Uncharacteri 20.6 6.8E+02 0.015 23.1 12.2 45 113-157 135-179 (319)
445 TIGR01801 CM_A chorismate muta 20.6 2.7E+02 0.0059 21.1 5.0 35 113-147 6-40 (102)
446 COG5293 Predicted ATPase [Gene 20.6 8.6E+02 0.019 24.3 9.8 81 99-179 340-429 (591)
447 KOG0994 Extracellular matrix g 20.6 1.2E+03 0.027 26.1 16.2 59 114-179 1685-1747(1758)
448 PF06637 PV-1: PV-1 protein (P 20.4 7.9E+02 0.017 23.8 12.7 56 34-98 274-333 (442)
449 KOG4378 Nuclear protein COP1 [ 20.3 1.9E+02 0.0042 29.0 5.0 40 136-178 630-672 (673)
450 KOG0979 Structural maintenance 20.3 1.1E+03 0.024 25.5 16.4 138 43-181 176-329 (1072)
451 PF10779 XhlA: Haemolysin XhlA 20.2 3.2E+02 0.0069 19.1 6.4 50 98-157 3-52 (71)
452 TIGR02449 conserved hypothetic 20.2 3.4E+02 0.0074 19.5 6.8 45 104-148 7-51 (65)
453 PF13591 MerR_2: MerR HTH fami 20.2 1.5E+02 0.0032 21.4 3.4 37 140-176 47-83 (84)
454 KOG4593 Mitotic checkpoint pro 20.2 9.7E+02 0.021 24.8 17.2 119 61-180 404-527 (716)
455 KOG3647 Predicted coiled-coil 20.1 7.1E+02 0.015 23.2 9.8 55 92-154 80-134 (338)
456 PF11594 Med28: Mediator compl 20.1 4.4E+02 0.0096 20.8 7.7 74 88-165 2-85 (106)
457 KOG0243 Kinesin-like protein [ 20.1 1.1E+03 0.024 25.4 12.8 123 32-161 367-512 (1041)
458 TIGR03545 conserved hypothetic 20.0 8.4E+02 0.018 24.0 10.2 38 115-152 216-257 (555)
No 1
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.34 E-value=0.021 Score=50.87 Aligned_cols=133 Identities=15% Similarity=0.263 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhh----cc
Q 030034 38 TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELR----AS 113 (184)
Q Consensus 38 ~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelR----a~ 113 (184)
.|++.+..-..+-..|...-..+-.-...|+...++.+.|+..+......+....=.++..+-.....+.+++. ..
T Consensus 153 ~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l 232 (325)
T PF08317_consen 153 GLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKEL 232 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555556666666666666666666666666777777777666665555555566666666666666665 55
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHH
Q 030034 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEA-ENKQLIAMRADIDGIRS 170 (184)
Q Consensus 114 e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~-d~qqip~l~aEid~lrq 170 (184)
+.++.++..+..++.++.+.++++.++++.+.+.+...++ ...-|..|+++++.|..
T Consensus 233 ~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 233 AELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555443332 44556666666666654
No 2
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.88 E-value=0.096 Score=45.27 Aligned_cols=118 Identities=20% Similarity=0.304 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHh---------------hHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhh
Q 030034 39 LEEEIEIQRREMHRIISENRHAIDD---------------NTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRG 103 (184)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRLAat---------------hvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~ 103 (184)
|=+||+.--.=++.|=.+|..|-.. ...+..+|..++..|..++.-.+.+..+.+.--.++-+=-
T Consensus 9 LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r 88 (312)
T PF00038_consen 9 LNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLR 88 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHH
Confidence 4456666666666666666666543 3446667777777777777777777778887778888888
Q ss_pred hhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030034 104 LKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENK 156 (184)
Q Consensus 104 ~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~q 156 (184)
.|+|.+......+..|+..++.++......|-+|-+++++|..||.-....-.
T Consensus 89 ~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~he 141 (312)
T PF00038_consen 89 RKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHE 141 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999988765443
No 3
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=96.50 E-value=0.34 Score=39.70 Aligned_cols=122 Identities=17% Similarity=0.337 Sum_probs=73.7
Q ss_pred HHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhh----HHhHHHHHHhhhhhhhhhhcchh-HHHHHHHHH
Q 030034 50 MHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADK----EAHTRELFDRGLKLEVELRASEP-VRAEVVQLR 124 (184)
Q Consensus 50 iqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~----e~q~Rel~ek~~KmEaelRa~e~-~k~El~Q~r 124 (184)
+..++.+|-..+.+.++-|.++.... ..+...+..+++|- +.++-.+-....+|..|+-.... ++.|+.+++
T Consensus 28 l~~~l~~~~~~~~~~~vtk~d~e~~~---~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~ 104 (177)
T PF07798_consen 28 LREVLNDSLEKVAQDLVTKSDLENQE---YLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLR 104 (177)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888777777788787776543 34445566666654 34444455555666666666554 777788888
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHH
Q 030034 125 AEVQK-LNSSRQELTTQIKGLTKDVNRLEAE-NKQLIAMRADIDGIRSELVE 174 (184)
Q Consensus 125 ~e~q~-L~~~RQELt~qvq~ltqeL~r~~~d-~qqip~l~aEid~lrqElqr 174 (184)
+|++- ++-.|.+.......+...++-.... ...|..|+++|++++-++.+
T Consensus 105 a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~lr 156 (177)
T PF07798_consen 105 AEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDTLR 156 (177)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87763 3333334444444444444333221 23366788899988888765
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.41 E-value=0.42 Score=47.31 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhh
Q 030034 39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIP 86 (184)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~ 86 (184)
++.++.....++..+-.....+-.....|.+++...+.++..+..-+.
T Consensus 292 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~ 339 (1164)
T TIGR02169 292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIE 339 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444443333
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.30 E-value=0.67 Score=45.58 Aligned_cols=6 Identities=50% Similarity=0.866 Sum_probs=2.3
Q ss_pred hHHHHH
Q 030034 39 LEEEIE 44 (184)
Q Consensus 39 LEe~La 44 (184)
++..+.
T Consensus 703 ~~~~l~ 708 (1179)
T TIGR02168 703 LRKELE 708 (1179)
T ss_pred HHHHHH
Confidence 334433
No 6
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=96.28 E-value=0.071 Score=42.21 Aligned_cols=72 Identities=22% Similarity=0.355 Sum_probs=63.1
Q ss_pred hhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhh
Q 030034 104 LKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFE 178 (184)
Q Consensus 104 ~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa 178 (184)
-+|-+.||..| .|+..++.++..|.+.|..|+.++=.++.+....++..++++.|+.+++.|.+.++-+--.
T Consensus 19 e~L~s~lr~~E---~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lel 90 (120)
T PF12325_consen 19 ERLQSQLRRLE---GELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLEL 90 (120)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666544 6999999999999999999999999999999999999999999999999999988765443
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.24 E-value=0.6 Score=46.26 Aligned_cols=23 Identities=4% Similarity=0.140 Sum_probs=8.2
Q ss_pred HHHHHHhhhhhHHhhHHHHHHHH
Q 030034 50 MHRIISENRHAIDDNTHLQRELT 72 (184)
Q Consensus 50 iqrLl~dNqRLAathvaLrqeL~ 72 (184)
+..+-.+...+......+..++.
T Consensus 331 ~~~l~~~~~~l~~~~~~~~~~~~ 353 (1164)
T TIGR02169 331 IDKLLAEIEELEREIEEERKRRD 353 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 8
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.06 E-value=0.77 Score=42.29 Aligned_cols=59 Identities=15% Similarity=0.268 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhcc
Q 030034 123 LRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEIRY 181 (184)
Q Consensus 123 ~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 181 (184)
+......+.+....|..++..+.++++..+.+.+++|....++..|..|+.-++..|+.
T Consensus 315 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~ 373 (498)
T TIGR03007 315 LQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQ 373 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666778888889999999999999999999999999999999888763
No 9
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.05 E-value=0.96 Score=44.09 Aligned_cols=49 Identities=16% Similarity=0.312 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhh
Q 030034 38 TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIP 86 (184)
Q Consensus 38 ~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~ 86 (184)
+|+.+|..-..|-..|+..|..|-..-..|+.++...+.+|.....-..
T Consensus 140 ~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e 188 (546)
T PF07888_consen 140 LLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEME 188 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777767788888888888887777777766666666655444333
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.01 E-value=1.1 Score=44.07 Aligned_cols=7 Identities=43% Similarity=0.340 Sum_probs=2.7
Q ss_pred hHHHHHH
Q 030034 39 LEEEIEI 45 (184)
Q Consensus 39 LEe~La~ 45 (184)
++.++..
T Consensus 675 l~~e~~~ 681 (1179)
T TIGR02168 675 RRREIEE 681 (1179)
T ss_pred HHHHHHH
Confidence 3344433
No 11
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.77 E-value=0.71 Score=37.38 Aligned_cols=114 Identities=17% Similarity=0.269 Sum_probs=63.9
Q ss_pred hhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030034 58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQEL 137 (184)
Q Consensus 58 qRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQEL 137 (184)
.++-.+-..+++-+...++|+..+...+.+...+-+..-...+.-.-.++.---..+.++.+......++..|....+++
T Consensus 77 ~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~ 156 (191)
T PF04156_consen 77 PRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDS 156 (191)
T ss_pred hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555444444433333333222222222223344555555555555555666677
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 030034 138 TTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSE 171 (184)
Q Consensus 138 t~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqE 171 (184)
-..++.+..++.+.+.+.+++-...++..++.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 190 (191)
T PF04156_consen 157 REEVQELRSQLERLQENLQQLEEKIQELQELLEQ 190 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7778888888888888888887777777777653
No 12
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.73 E-value=1.2 Score=38.52 Aligned_cols=121 Identities=20% Similarity=0.300 Sum_probs=65.4
Q ss_pred HHHhhhhhHHhhHH---HHHHHHhhHHHHHHHhhh----hhhhhhhhHHh---HHHHHHh----hhhhhhhhhcchhHHH
Q 030034 53 IISENRHAIDDNTH---LQRELTASKDEIHRLGQI----IPKLRADKEAH---TRELFDR----GLKLEVELRASEPVRA 118 (184)
Q Consensus 53 Ll~dNqRLAathva---LrqeL~aaq~El~~l~~~----i~~i~ae~e~q---~Rel~ek----~~KmEaelRa~e~~k~ 118 (184)
|-.=|-|||.-... |-++=.....+|..+... .+.+..--+.+ +|..++. ..+|+.+ .+.++.
T Consensus 6 L~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e---~~~l~~ 82 (312)
T PF00038_consen 6 LQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELE---IDNLKE 82 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhh---hhhHHH
Confidence 33448888864433 333444444444444433 11222222222 3333333 2334443 457788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 030034 119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 119 El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (184)
|+..++....+..+.|+.|-.++..+.++|.....- .-.|..+|.+|+.||...+..+
T Consensus 83 e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~---r~~le~~i~~L~eEl~fl~~~h 140 (312)
T PF00038_consen 83 ELEDLRRKYEEELAERKDLEEELESLRKDLDEETLA---RVDLENQIQSLKEELEFLKQNH 140 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh---HhHHHHHHHHHHHHHHHHHhhh
Confidence 888888888888888888888888888887754432 2334445555555555544443
No 13
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.25 E-value=1.9 Score=41.07 Aligned_cols=66 Identities=20% Similarity=0.364 Sum_probs=47.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------HHHHHHHHHHHHHHHHHhhhh
Q 030034 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ-----------LIAMRADIDGIRSELVEARFE 178 (184)
Q Consensus 113 ~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qq-----------ip~l~aEid~lrqElqr~Raa 178 (184)
+..++.||.++..++++....--.|...|.+|..||.+.+.+... |..|.+|+..++.||.-+++.
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~ 359 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAE 359 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhh
Confidence 667788888888888877777777777777777777777766543 566666777777766555443
No 14
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.19 E-value=2 Score=45.01 Aligned_cols=136 Identities=12% Similarity=0.165 Sum_probs=108.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcc--h
Q 030034 37 MTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRAS--E 114 (184)
Q Consensus 37 ~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~--e 114 (184)
.-++.+|..-...|..|-.+=..+....-.|++++...+.+-+.+...+..++ ...+++++-..+..|+.++... .
T Consensus 973 ~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~--~~~~l~el~~eI~~l~~~~~~~~~~ 1050 (1311)
T TIGR00606 973 KQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRK--RENELKEVEEELKQHLKEMGQMQVL 1050 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhccHH
Confidence 45667777777788888888888889999999999999999999999888887 4555678888888888887766 7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 030034 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA 175 (184)
Q Consensus 115 ~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~ 175 (184)
.+..|...+..++..|.+.+..+.+++..+..++..++.+... |..+.=-+..+..+..+
T Consensus 1051 ~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e-~~yk~a~~ryrka~i~~ 1110 (1311)
T TIGR00606 1051 QMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE-PQFRDAEEKYREMMIVM 1110 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-hHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999888888888855 55554444444444443
No 15
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.19 E-value=3.1 Score=39.78 Aligned_cols=109 Identities=18% Similarity=0.288 Sum_probs=78.7
Q ss_pred HHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHH----HH
Q 030034 48 REMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVV----QL 123 (184)
Q Consensus 48 ~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~----Q~ 123 (184)
.|.+.--.|-+-.-...-++++++..|++|+.++.....+++++ +--|.+...++|+++.|+-+=.++|+ |+
T Consensus 109 ~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtr----l~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Ql 184 (499)
T COG4372 109 SELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTR----LKTLAEQRRQLEAQAQSLQASQKQLQASATQL 184 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666677789999999999999999999888765 56799999999999999777777766 55
Q ss_pred HHHHHHHHHH-------HHHHH---HHHHHHHHHHHHHHHhhhhHHH
Q 030034 124 RAEVQKLNSS-------RQELT---TQIKGLTKDVNRLEAENKQLIA 160 (184)
Q Consensus 124 r~e~q~L~~~-------RQELt---~qvq~ltqeL~r~~~d~qqip~ 160 (184)
.+++..|... =++|. ..+|..++||++..+-.||...
T Consensus 185 k~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q 231 (499)
T COG4372 185 KSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQ 231 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544321 12222 3467788888887776666543
No 16
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=95.00 E-value=0.59 Score=45.86 Aligned_cols=118 Identities=14% Similarity=0.218 Sum_probs=80.5
Q ss_pred hhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhh-----HHhHHHHHHhhhhhhhhhhcchhHHHHHHHH----HHHH
Q 030034 57 NRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADK-----EAHTRELFDRGLKLEVELRASEPVRAEVVQL----RAEV 127 (184)
Q Consensus 57 NqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~-----e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~----r~e~ 127 (184)
|.....+-.=|.++|...+++|...-..+.+.+.++ +.+...+++++..+++++-......+++.+. |-.+
T Consensus 262 ~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v 341 (726)
T PRK09841 262 AAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTY 341 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchH
Confidence 444445566677777777777777766677766655 3445566777766666655544444443321 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhcc
Q 030034 128 QKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEIRY 181 (184)
Q Consensus 128 q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 181 (184)
+.|..+++.+.++++.+++..+++|....++..|..+..-.|..|++
T Consensus 342 -------~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~ 388 (726)
T PRK09841 342 -------RALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQ 388 (726)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667788889999999999999999999999999999988865
No 17
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.00 E-value=1.5 Score=40.13 Aligned_cols=106 Identities=18% Similarity=0.261 Sum_probs=69.9
Q ss_pred HHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHH-hHH----HHHHhhhhhhhhhhcchhHHHHHHHHHHH
Q 030034 52 RIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEA-HTR----ELFDRGLKLEVELRASEPVRAEVVQLRAE 126 (184)
Q Consensus 52 rLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~-q~R----el~ek~~KmEaelRa~e~~k~El~Q~r~e 126 (184)
..-..|..|..+-..|+|.|..+|-|+.-|...+++.+...+- ..+ +=-+-+..||.==.-.+.+--|++.+--|
T Consensus 76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDE 155 (319)
T PF09789_consen 76 ESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDE 155 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445799999999999999999999999999998887764321 111 11111222232222233455555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhh
Q 030034 127 VQKLNSSRQELTTQIKGLTKDVNRLE-AENKQ 157 (184)
Q Consensus 127 ~q~L~~~RQELt~qvq~ltqeL~r~~-~d~qq 157 (184)
.+.|...|...-.+++.|++||.-+- +|...
T Consensus 156 keEl~~ERD~yk~K~~RLN~ELn~~L~g~~~r 187 (319)
T PF09789_consen 156 KEELVTERDAYKCKAHRLNHELNYILNGDENR 187 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 66777777777788999999998765 33333
No 18
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=94.91 E-value=0.71 Score=39.81 Aligned_cols=111 Identities=23% Similarity=0.340 Sum_probs=61.2
Q ss_pred hHHHHHHHHhhHHHHHHHhhhhhhhhh----------hhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHH
Q 030034 64 NTHLQRELTASKDEIHRLGQIIPKLRA----------DKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSS 133 (184)
Q Consensus 64 hvaLrqeL~aaq~El~~l~~~i~~i~a----------e~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~ 133 (184)
+--|||.|-.+|-|+-.=-+-|-++++ .+|.++.++-+....-..+ .+.-..||++...|+.-|...
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~E---LE~ce~ELqr~~~Ea~lLrek 88 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLE---LEVCENELQRKKNEAELLREK 88 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHh---HHHhHHHHHHHhCHHHHhhhh
Confidence 344666666666555443333333333 2344444444332222222 224556777777776655555
Q ss_pred HHHHHHHHHHHHHHHHHH------------------HH--hhhhHHHHHHHHHHHHHHHHHhhh
Q 030034 134 RQELTTQIKGLTKDVNRL------------------EA--ENKQLIAMRADIDGIRSELVEARF 177 (184)
Q Consensus 134 RQELt~qvq~ltqeL~r~------------------~~--d~qqip~l~aEid~lrqElqr~Ra 177 (184)
=..|..++..|..++... +. ...-++.|+.++|.|+.||...|-
T Consensus 89 l~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~ 152 (202)
T PF06818_consen 89 LGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQ 152 (202)
T ss_pred hhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHH
Confidence 555555666666666554 11 123477789999999999987665
No 19
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.81 E-value=3 Score=37.71 Aligned_cols=132 Identities=18% Similarity=0.264 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhh----hcch
Q 030034 39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVEL----RASE 114 (184)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEael----Ra~e 114 (184)
|++.+..-..|-..|..+.+.+-.-.-.|+.-.+..+.|+..+......+..=.--+...+-++..+...++ ...+
T Consensus 149 L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~ 228 (312)
T smart00787 149 LDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLE 228 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555555555556666666666666666655555443322223344444433333322 2334
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHH
Q 030034 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE-AENKQLIAMRADIDGIRS 170 (184)
Q Consensus 115 ~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~-~d~qqip~l~aEid~lrq 170 (184)
.++.++..+.+.|.......+++.++++.+.+.+...+ -+..-|..|++.++.|.+
T Consensus 229 e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 229 ELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555554443333 244555666666665554
No 20
>PRK02224 chromosome segregation protein; Provisional
Probab=94.73 E-value=3.7 Score=40.51 Aligned_cols=80 Identities=18% Similarity=0.258 Sum_probs=43.5
Q ss_pred HHHHHHhhhhhhhhhh--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 030034 96 TRELFDRGLKLEVELR--ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELV 173 (184)
Q Consensus 96 ~Rel~ek~~KmEaelR--a~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElq 173 (184)
+.++=.++..+|+.+. ..+.+..++.++...+.++.....++.+++..+..++..+.....++-.+..+++.+...+.
T Consensus 629 l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~~e~~~~~~~~~~~~~~~~~ 708 (880)
T PRK02224 629 LAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVE 708 (880)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443322 23466666677777777776666666666666666666555555555555555544444433
Q ss_pred Hh
Q 030034 174 EA 175 (184)
Q Consensus 174 r~ 175 (184)
.+
T Consensus 709 ~l 710 (880)
T PRK02224 709 AL 710 (880)
T ss_pred HH
Confidence 33
No 21
>PRK02224 chromosome segregation protein; Provisional
Probab=94.70 E-value=4.6 Score=39.87 Aligned_cols=84 Identities=24% Similarity=0.317 Sum_probs=38.4
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 65 THLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGL 144 (184)
Q Consensus 65 vaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~l 144 (184)
-.++.++...+.++..+...+..++. ++..+-++...++......+.+..++..+...++++.....++..++..+
T Consensus 209 ~~~~~~l~el~~~i~~~~~~~~~l~~----~l~~l~~~~~el~~~~~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~ 284 (880)
T PRK02224 209 NGLESELAELDEEIERYEEQREQARE----TRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDL 284 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443322 22233344444554455555555555555555555544444444444444
Q ss_pred HHHHHHHH
Q 030034 145 TKDVNRLE 152 (184)
Q Consensus 145 tqeL~r~~ 152 (184)
...+..+.
T Consensus 285 ~~~~~~le 292 (880)
T PRK02224 285 RERLEELE 292 (880)
T ss_pred HHHHHHHH
Confidence 44444333
No 22
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.68 E-value=2.7 Score=46.43 Aligned_cols=144 Identities=19% Similarity=0.219 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHH
Q 030034 40 EEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAE 119 (184)
Q Consensus 40 Ee~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~E 119 (184)
.+++..-...+...-.-|-.|=-+...|+||+..+.-|+++.+.++..+....-.----|.+.-.++|.=.--.+....|
T Consensus 1385 ~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e 1464 (1930)
T KOG0161|consen 1385 QQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRE 1464 (1930)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555666667777888899999999999988876666554332222222233333333333334456666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhcccc
Q 030034 120 VVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEIRYFL 183 (184)
Q Consensus 120 l~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyEk 183 (184)
+.+...++++|...=-++..++.++..+-..++++...+-.-..|...-.+|++..+..+|.+|
T Consensus 1465 ~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~ 1528 (1930)
T KOG0161|consen 1465 LRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEK 1528 (1930)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666776666666666666667666666666666666666666666666666666666554
No 23
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.65 E-value=1.5 Score=39.14 Aligned_cols=87 Identities=22% Similarity=0.371 Sum_probs=41.7
Q ss_pred HhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhh-----cchhHHHHHHHHHHHHHHHHHHHHH
Q 030034 62 DDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELR-----ASEPVRAEVVQLRAEVQKLNSSRQE 136 (184)
Q Consensus 62 athvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelR-----a~e~~k~El~Q~r~e~q~L~~~RQE 136 (184)
..+-.|++|.......+..++...+++...++.=..++. ....+..++- -.+.+|++|..+..++..+...=.+
T Consensus 156 ~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~-~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~e 234 (325)
T PF08317_consen 156 ENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELE-NLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAE 234 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566667777777777777777766665553222211 1122222222 2334555555555555533333333
Q ss_pred HHHHHHHHHHHHH
Q 030034 137 LTTQIKGLTKDVN 149 (184)
Q Consensus 137 Lt~qvq~ltqeL~ 149 (184)
|..+++.++.++.
T Consensus 235 l~~el~~l~~~i~ 247 (325)
T PF08317_consen 235 LQEELEELEEKIE 247 (325)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 24
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.56 E-value=3.3 Score=40.48 Aligned_cols=75 Identities=21% Similarity=0.248 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhH----------HhHHHHHHhhhhhhh
Q 030034 39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE----------AHTRELFDRGLKLEV 108 (184)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e----------~q~Rel~ek~~KmEa 108 (184)
.+.+...-..+...|=.++.-|-..--.|+.+|...+.++..|.....++....+ .+.-+...++.++|.
T Consensus 148 ~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEe 227 (546)
T PF07888_consen 148 CQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEE 227 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555666556666666666666666666555544443333222 122334555566666
Q ss_pred hhhcc
Q 030034 109 ELRAS 113 (184)
Q Consensus 109 elRa~ 113 (184)
++..+
T Consensus 228 di~~l 232 (546)
T PF07888_consen 228 DIKTL 232 (546)
T ss_pred HHHHH
Confidence 65544
No 25
>PRK03918 chromosome segregation protein; Provisional
Probab=94.48 E-value=3.7 Score=40.29 Aligned_cols=60 Identities=27% Similarity=0.428 Sum_probs=26.6
Q ss_pred hhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 030034 104 LKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRA 163 (184)
Q Consensus 104 ~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~a 163 (184)
.+++.++...+..+.++..+..+.+.|...-+.+...+..+.+++..+.....++..+..
T Consensus 224 ~~~~~~l~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~ 283 (880)
T PRK03918 224 EKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVK 283 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444544444444444444444444444444444444444443333333
No 26
>PRK09039 hypothetical protein; Validated
Probab=94.32 E-value=1.4 Score=40.02 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhHHhhHHH-HHHHHhhHHHHHHHhhhhhhhhhhhH
Q 030034 37 MTLEEEIEIQRREMHRIISENRHAIDDNTHL-QRELTASKDEIHRLGQIIPKLRADKE 93 (184)
Q Consensus 37 ~~LEe~La~Q~~EiqrLl~dNqRLAathvaL-rqeL~aaq~El~~l~~~i~~i~ae~e 93 (184)
-.|.+.|.-+..|+.+|=..=-.|+. .++| ++.....+.+|..++..+..++++++
T Consensus 42 ~fLs~~i~~~~~eL~~L~~qIa~L~e-~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~ 98 (343)
T PRK09039 42 FFLSREISGKDSALDRLNSQIAELAD-LLSLERQGNQDLQDSVANLRASLSAAEAERS 98 (343)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 35778888888887777222111221 2222 23334445555555555555554443
No 27
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.27 E-value=1.8 Score=40.15 Aligned_cols=108 Identities=12% Similarity=0.215 Sum_probs=74.7
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhc----chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 65 THLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRA----SEPVRAEVVQLRAEVQKLNSSRQELTTQ 140 (184)
Q Consensus 65 vaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa----~e~~k~El~Q~r~e~q~L~~~RQELt~q 140 (184)
..|...+...+.++..+...+..+....+ ++.++..++..++..+.. .+.+..+...+.+++.+|...-.++..+
T Consensus 302 ~~l~d~i~~l~~~l~~l~~~i~~~~~~~~-~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~ 380 (562)
T PHA02562 302 TKIKDKLKELQHSLEKLDTAIDELEEIMD-EFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEE 380 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHH
Confidence 34555666666666666666665554444 355555555555555444 4557777888888888888888888888
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 030034 141 IKGLTKDVNRLEAENKQLIAMRADIDGIRSELV 173 (184)
Q Consensus 141 vq~ltqeL~r~~~d~qqip~l~aEid~lrqElq 173 (184)
+..+..+|..+..+...+|.-+...+.++..+.
T Consensus 381 l~~l~~~l~~~~~~~~~~~ke~~~~~~i~~~~~ 413 (562)
T PHA02562 381 LAKLQDELDKIVKTKSELVKEKYHRGIVTDLLK 413 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888877766666555543
No 28
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=93.99 E-value=1.8 Score=43.76 Aligned_cols=107 Identities=23% Similarity=0.360 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHH
Q 030034 42 EIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVV 121 (184)
Q Consensus 42 ~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~ 121 (184)
++..-..+.+.+-.+|+++-.+--+|+-+| -++.|+.+|..-......+-+.--- +|++- ...+-+.+|..
T Consensus 54 ~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~--ld~~~------~q~~rl~~E~e 124 (775)
T PF10174_consen 54 ELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE--LDKAQ------EQFERLQAERE 124 (775)
T ss_pred HHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh--hhhHH------HHHHHHHHHHH
Confidence 456667889999999999999999999999 9999999999887777666653111 33221 12223333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030034 122 QLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ 157 (184)
Q Consensus 122 Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qq 157 (184)
-+..|+..|...=.++-.++..+.++|.....+..+
T Consensus 125 r~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~k 160 (775)
T PF10174_consen 125 RLQRELERLRKTLEELQLRIETQQQTLDKADEEIEK 160 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444333
No 29
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.96 E-value=2 Score=41.01 Aligned_cols=63 Identities=16% Similarity=0.333 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 030034 114 EPVRAEVVQLRAEVQKLNSSRQ-------ELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 114 e~~k~El~Q~r~e~q~L~~~RQ-------ELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (184)
..+..||..++.++..+...-. +|+..++.++.|...++.+ .-.++.|+..++.|+..+++++
T Consensus 340 ~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~e---a~~~~~E~~~~k~E~e~~ka~i 409 (522)
T PF05701_consen 340 SSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKE---AEEAKEEVEKAKEEAEQTKAAI 409 (522)
T ss_pred hhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544433332 3444444444444443322 2345556666666666666554
No 30
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=93.66 E-value=2.1 Score=43.31 Aligned_cols=116 Identities=20% Similarity=0.265 Sum_probs=77.8
Q ss_pred HhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhh---hhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHH
Q 030034 55 SENRHAIDDNTHLQRELTASKDEIHRLGQIIPK---LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLN 131 (184)
Q Consensus 55 ~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~---i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~ 131 (184)
+.+.++......|++||..++.++.....-|.. -..++|..+|+-- +.++ ..+++++.+...|.+++.
T Consensus 3 ~ql~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee--~a~l-------~~~k~qlr~~q~e~q~~~ 73 (775)
T PF10174_consen 3 AQLERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEE--AAEL-------SRLKEQLRVTQEENQKAQ 73 (775)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHH--HHHH-------HhHHHHHHHHHhhHHHHH
Confidence 456677777788899999998888877666543 3345555444421 1122 256777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-------h----------hhHHHHHHHHHHHHHHHHHhhhhhc
Q 030034 132 SSRQELTTQIKGLTKDVNRLEAE-------N----------KQLIAMRADIDGIRSELVEARFEIR 180 (184)
Q Consensus 132 ~~RQELt~qvq~ltqeL~r~~~d-------~----------qqip~l~aEid~lrqElqr~Raa~E 180 (184)
..-+.|-.++ ....|+.+++.. . .++--|.+|.|.+..|+-.+|.++|
T Consensus 74 ~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~lr~~lE 138 (775)
T PF10174_consen 74 EEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELERLRKTLE 138 (775)
T ss_pred HHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776 666666555554 3 3566677899999999999988765
No 31
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=93.52 E-value=2.2 Score=42.88 Aligned_cols=135 Identities=24% Similarity=0.317 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhh-hhhcchhHHHHHH
Q 030034 43 IEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEV-ELRASEPVRAEVV 121 (184)
Q Consensus 43 La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEa-elRa~e~~k~El~ 121 (184)
|+-|-.||+||=.+=+-|-.+-.-=+=-|.+--.||.++..+-..-++|.| ..|.-+ ++-|. -.+.-|..+.||.
T Consensus 68 is~qlqE~rrle~e~~~lre~sl~qkmrLe~qa~Ele~l~~ae~agraEae-~Lraal---a~ae~~R~~lEE~~q~ELe 143 (739)
T PF07111_consen 68 ISRQLQELRRLEEEVRALRETSLQQKMRLEAQAEELEALARAEKAGRAEAE-ELRAAL---AGAEVVRKNLEEGSQRELE 143 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHH---hhHHHHHHhhHHHHHHHHH
Confidence 555668898888877666555322122233444477777666555555543 122111 11111 1111244455554
Q ss_pred HHHH----HHHHHHHHHH----HHHHHHHHHHHHHHHHH----HhhhhHHHHHHHHHHHHHHHHHhhhhhcc
Q 030034 122 QLRA----EVQKLNSSRQ----ELTTQIKGLTKDVNRLE----AENKQLIAMRADIDGIRSELVEARFEIRY 181 (184)
Q Consensus 122 Q~r~----e~q~L~~~RQ----ELt~qvq~ltqeL~r~~----~d~qqip~l~aEid~lrqElqr~Raa~Ey 181 (184)
.++. ++..|+.+=| .|+.+++.|.+.|.-.. .+.+.+.+...|.|.|+++|-.....||-
T Consensus 144 e~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~ 215 (739)
T PF07111_consen 144 EAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEA 215 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4432 3444444444 47888888888776544 57788999999999999999888777763
No 32
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.42 E-value=5.2 Score=35.28 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=8.7
Q ss_pred HhHHHHHHhhhhhhhhh
Q 030034 94 AHTRELFDRGLKLEVEL 110 (184)
Q Consensus 94 ~q~Rel~ek~~KmEael 110 (184)
..++++=+|..+.|-.+
T Consensus 66 ~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 66 SEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555554
No 33
>PRK11637 AmiB activator; Provisional
Probab=93.40 E-value=6.3 Score=36.19 Aligned_cols=22 Identities=5% Similarity=0.105 Sum_probs=11.9
Q ss_pred CChhhhHHHHHHHHHHHHHHHH
Q 030034 34 FHPMTLEEEIEIQRREMHRIIS 55 (184)
Q Consensus 34 p~p~~LEe~La~Q~~EiqrLl~ 55 (184)
+.++-++++|.....+|..+-.
T Consensus 40 ~~~~~~~~~l~~l~~qi~~~~~ 61 (428)
T PRK11637 40 AHASDNRDQLKSIQQDIAAKEK 61 (428)
T ss_pred ccchhhHHHHHHHHHHHHHHHH
Confidence 3345566666665555554443
No 34
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.55 E-value=11 Score=36.82 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhcc
Q 030034 137 LTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEIRY 181 (184)
Q Consensus 137 Lt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 181 (184)
+..+...+...++..++...++|....|+..|..|..-.|..|+.
T Consensus 350 a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ 394 (754)
T TIGR01005 350 AQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYES 394 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHH
Confidence 334455777888889999999999999999999999999988764
No 35
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=92.38 E-value=7.8 Score=40.30 Aligned_cols=135 Identities=16% Similarity=0.273 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHH--------------HHHHhhhhhhhhhhhHHhHHHHHHhhhhhh
Q 030034 42 EIEIQRREMHRIISENRHAIDDNTHLQRELTASKDE--------------IHRLGQIIPKLRADKEAHTRELFDRGLKLE 107 (184)
Q Consensus 42 ~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~E--------------l~~l~~~i~~i~ae~e~q~Rel~ek~~KmE 107 (184)
++..|.++|+--|-+-+|=|..---+++||.--.++ +..+.+-+-.+++|.+.||-++--++..+|
T Consensus 327 kltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e 406 (1265)
T KOG0976|consen 327 KLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLE 406 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 567788888887888777777666666666532221 122233446788999999999999999999
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 030034 108 VELRASEPVRAEVVQLRAEVQKLNSS----------------------------RQELTTQIKGLTKDVNRLEAENKQLI 159 (184)
Q Consensus 108 aelRa~e~~k~El~Q~r~e~q~L~~~----------------------------RQELt~qvq~ltqeL~r~~~d~qqip 159 (184)
.=-+.-|++|+||+.+---+..+.+. +.+|...++.++.-|++.+---|++-
T Consensus 407 ~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrKVeqe~e 486 (1265)
T KOG0976|consen 407 QGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRKVEQEYE 486 (1265)
T ss_pred hccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcchHHHHH
Confidence 98899999999998776555544433 45777888888888888888888888
Q ss_pred HHHHHH-------HHHHHHHHHhh
Q 030034 160 AMRADI-------DGIRSELVEAR 176 (184)
Q Consensus 160 ~l~aEi-------d~lrqElqr~R 176 (184)
.|++|. +-|..|||..|
T Consensus 487 mlKaen~rqakkiefmkEeiQeth 510 (1265)
T KOG0976|consen 487 MLKAENERQAKKIEFMKEEIQETH 510 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888874 45777777654
No 36
>PRK11637 AmiB activator; Provisional
Probab=92.37 E-value=8.8 Score=35.23 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=12.8
Q ss_pred hHHHHHHHHhhHHHHHHHhhhhhhhhhh
Q 030034 64 NTHLQRELTASKDEIHRLGQIIPKLRAD 91 (184)
Q Consensus 64 hvaLrqeL~aaq~El~~l~~~i~~i~ae 91 (184)
.-.+.++|...+.+|..+...|..++.+
T Consensus 91 i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 91 LRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443
No 37
>PF13514 AAA_27: AAA domain
Probab=92.24 E-value=11 Score=38.78 Aligned_cols=136 Identities=19% Similarity=0.272 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHH-----hHHHHHHhhhhhhhhhhcch----
Q 030034 44 EIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEA-----HTRELFDRGLKLEVELRASE---- 114 (184)
Q Consensus 44 a~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~-----q~Rel~ek~~KmEaelRa~e---- 114 (184)
-.+..|+++=+.+..--..+...|++++..++.++..+...+..++++... .+..++.....++++|-+..
T Consensus 156 l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~~l~~~~~ 235 (1111)
T PF13514_consen 156 LKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELAELGEVPD 235 (1111)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCcCC
Confidence 345566666666666677788888899999999998888888888776553 44456777777777776432
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 030034 115 ---PVRAEVVQLRAEVQKLNSSRQELTTQ-----------------------IKGLTKDVNRLEAENKQLIAMRADIDGI 168 (184)
Q Consensus 115 ---~~k~El~Q~r~e~q~L~~~RQELt~q-----------------------vq~ltqeL~r~~~d~qqip~l~aEid~l 168 (184)
.-...+.++..++..+......+..+ |..|...+.........+|.+..++..+
T Consensus 236 ~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~dl~~~~~e~~~~ 315 (1111)
T PF13514_consen 236 FPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKARQDLPRLEAELAEL 315 (1111)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334444444444444333333333 3444445555555666677777777777
Q ss_pred HHHHHHhhhhh
Q 030034 169 RSELVEARFEI 179 (184)
Q Consensus 169 rqElqr~Raa~ 179 (184)
+.++..+-..+
T Consensus 316 ~~~~~~~~~~l 326 (1111)
T PF13514_consen 316 EAELRALLAQL 326 (1111)
T ss_pred HHHHHHHHHhc
Confidence 77666655443
No 38
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.13 E-value=12 Score=39.47 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhh
Q 030034 157 QLIAMRADIDGIRSELVEARFE 178 (184)
Q Consensus 157 qip~l~aEid~lrqElqr~Raa 178 (184)
+.+.+..+|+.+..++..+++.
T Consensus 882 ~r~~le~~L~el~~el~~l~~~ 903 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQSLIRE 903 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 39
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=92.11 E-value=17 Score=37.88 Aligned_cols=90 Identities=26% Similarity=0.427 Sum_probs=45.8
Q ss_pred HhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHH---hHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 62 DDNTHLQRELTASKDEIHRLGQIIPKLRADKEA---HTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELT 138 (184)
Q Consensus 62 athvaLrqeL~aaq~El~~l~~~i~~i~ae~e~---q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt 138 (184)
+.-..+..+++..+.++..++..+.++..+.+. ++.++..+...+++++-. ++.++..+..++..|....+++.
T Consensus 383 ~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~ 459 (1163)
T COG1196 383 EELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEE---LQTELEELNEELEELEEQLEELR 459 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444555555555554443332 333334444444444433 55566666666666666666666
Q ss_pred HHHHHHHHHHHHHHHh
Q 030034 139 TQIKGLTKDVNRLEAE 154 (184)
Q Consensus 139 ~qvq~ltqeL~r~~~d 154 (184)
.++..+.+++..++..
T Consensus 460 ~~~~~~~~~~~~~~~~ 475 (1163)
T COG1196 460 DRLKELERELAELQEE 475 (1163)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666555555554443
No 40
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.03 E-value=5 Score=39.68 Aligned_cols=120 Identities=17% Similarity=0.297 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhh-----hhhhHHhHHHHH-----Hhhhhhhhhhhcchh
Q 030034 46 QRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKL-----RADKEAHTRELF-----DRGLKLEVELRASEP 115 (184)
Q Consensus 46 Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i-----~ae~e~q~Rel~-----ek~~KmEaelRa~e~ 115 (184)
...||...-.||++|+.-.-+|+.+|..+..-+--+..+..++ +-+++.-.+++. +++.|||++|.-...
T Consensus 329 ~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~ 408 (654)
T KOG4809|consen 329 RLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHN 408 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999887665554444444433 445666666654 789999998864433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 030034 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIR 169 (184)
Q Consensus 116 ~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lr 169 (184)
.-. -++++ ......++.|-...--..+++.++++++..+=.+-+|.++++
T Consensus 409 ~~d---dar~~-pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneK 458 (654)
T KOG4809|consen 409 IED---DARMN-PEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEK 458 (654)
T ss_pred hhH---hhhcC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 222 22222 234455666666666667777777777777777777666554
No 41
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.98 E-value=6.9 Score=33.13 Aligned_cols=138 Identities=19% Similarity=0.295 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhH-
Q 030034 38 TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPV- 116 (184)
Q Consensus 38 ~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~- 116 (184)
-|.+.|+.-+.+++.|..||+-|=.-. .||+-+-.+- ..-..-+|.+-.=..-+||.|=++..+.....++.+.-
T Consensus 16 ~L~n~l~elq~~l~~l~~ENk~Lk~lq--~Rq~kAL~k~--e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~kl 91 (194)
T PF15619_consen 16 ELQNELAELQRKLQELRKENKTLKQLQ--KRQEKALQKY--EDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKL 91 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999999998775432 2333211111 01111222222222233333333333333333222211
Q ss_pred ---HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH----------------------HHHhhhhHHHHHH
Q 030034 117 ---RAEVVQLRAEVQKLNS--------SRQELTTQIKGLTKDVNR----------------------LEAENKQLIAMRA 163 (184)
Q Consensus 117 ---k~El~Q~r~e~q~L~~--------~RQELt~qvq~ltqeL~r----------------------~~~d~qqip~l~a 163 (184)
-.|+.....+++.|.. .|.+|+.++..++..+.. +.++..++-.+..
T Consensus 92 k~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~ 171 (194)
T PF15619_consen 92 KDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQE 171 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 1233344444433322 367777776666655543 3467778888999
Q ss_pred HHHHHHHHHHHhhhhh
Q 030034 164 DIDGIRSELVEARFEI 179 (184)
Q Consensus 164 Eid~lrqElqr~Raa~ 179 (184)
++..+..|+.++..-+
T Consensus 172 ~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 172 EVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887755
No 42
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.84 E-value=8.5 Score=33.87 Aligned_cols=116 Identities=22% Similarity=0.283 Sum_probs=56.4
Q ss_pred hhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHH------hHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHH
Q 030034 59 HAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEA------HTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNS 132 (184)
Q Consensus 59 RLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~------q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~ 132 (184)
.+.+....|..++...+.++..+...+..++++... ....|+++..-...++ +..+.++.++..++..+.+
T Consensus 141 ~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~---~~~~~~~~~~~~~l~~~~~ 217 (423)
T TIGR01843 141 TLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLEL---LELERERAEAQGELGRLEA 217 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH---HHHHHHHHHHHhHHHHHHH
Confidence 344445555555555555555555555544443322 2233445433333332 2455566666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHhhh
Q 030034 133 SRQELTTQIKGLTKDVNRLEAE-----NKQLIAMRADIDGIRSELVEARF 177 (184)
Q Consensus 133 ~RQELt~qvq~ltqeL~r~~~d-----~qqip~l~aEid~lrqElqr~Ra 177 (184)
.-..+..++..+..++.....+ ...+-.+.+++..++.++..++.
T Consensus 218 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 218 ELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555554443322 12233444444444444444443
No 43
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.83 E-value=1.3 Score=36.69 Aligned_cols=104 Identities=16% Similarity=0.235 Sum_probs=28.9
Q ss_pred ChhhhHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcch
Q 030034 35 HPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASE 114 (184)
Q Consensus 35 ~p~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e 114 (184)
....++.++.....|+..+.-.|-.++..-+.+-.+|...+.++......|..++++...--..+-+.-..|+.-=++++
T Consensus 68 ~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e 147 (194)
T PF08614_consen 68 QISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANE 147 (194)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33568999999999999999999999988888888888888888888777777766655433333333333333334455
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 115 PVRAEVVQLRAEVQKLNSSRQELT 138 (184)
Q Consensus 115 ~~k~El~Q~r~e~q~L~~~RQELt 138 (184)
-+++|+.-+..+.-.+..-...|.
T Consensus 148 ~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 148 ILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666555555444444333333
No 44
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=91.75 E-value=14 Score=39.01 Aligned_cols=56 Identities=20% Similarity=0.468 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 030034 114 EPVRAEVVQLRAEV-QKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSEL 172 (184)
Q Consensus 114 e~~k~El~Q~r~e~-q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqEl 172 (184)
+.++..+..++.+. +.+.+.+-+...++..|.+++.++.. ++-.|+.|++.++.++
T Consensus 375 d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~---~~~~L~~e~~~~~~~~ 431 (1074)
T KOG0250|consen 375 DRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEE---QINSLREELNEVKEKA 431 (1074)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 34444445555554 55666666666666666666666555 5555555555554443
No 45
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.44 E-value=2.7 Score=33.33 Aligned_cols=66 Identities=21% Similarity=0.383 Sum_probs=46.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Q 030034 112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARF 177 (184)
Q Consensus 112 a~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra 177 (184)
-++.|.+.|.+.-+|+..|...-.-|+.+=..++.||.++..++-.+-+...+++.|+.++..+..
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ 82 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQ 82 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777777777777777777777777777777777777777766554
No 46
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=91.28 E-value=21 Score=37.45 Aligned_cols=74 Identities=24% Similarity=0.322 Sum_probs=42.7
Q ss_pred hhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhc
Q 030034 105 KLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEIR 180 (184)
Q Consensus 105 KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (184)
.+.+++-....++.++..+.....-|.+.=+++..+-..+.+.|.... +.++..+.++++.++.++...+..++
T Consensus 346 ~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~--~~~~~~~~~~~~~~~e~~~~~~~~~~ 419 (1201)
T PF12128_consen 346 QLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAF--NRQQERLQAQQDEIREEKAERREQIE 419 (1201)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455555555555555555555555555555545444444 34777788888888888877766554
No 47
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=91.27 E-value=0.86 Score=46.07 Aligned_cols=57 Identities=21% Similarity=0.461 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 030034 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVE 174 (184)
Q Consensus 118 ~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr 174 (184)
-||-++..|+-+|.+.|--|...+-.||-++.++....+-+|.|++++++|+|=|--
T Consensus 866 GElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a 922 (961)
T KOG4673|consen 866 GELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAA 922 (961)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999999986643
No 48
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=91.17 E-value=7.2 Score=31.77 Aligned_cols=43 Identities=23% Similarity=0.197 Sum_probs=23.0
Q ss_pred HHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhh
Q 030034 49 EMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRAD 91 (184)
Q Consensus 49 EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae 91 (184)
+..+.=.++--|-....+|..||...+.+...+-......+++
T Consensus 11 kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~e 53 (140)
T PF10473_consen 11 KLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAE 53 (140)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444444555555555566666666666666554444444433
No 49
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=91.13 E-value=3.9 Score=36.41 Aligned_cols=129 Identities=17% Similarity=0.185 Sum_probs=71.6
Q ss_pred HHHHHHh-hhhhH-HhhHHHHHHHHhhHHHHHHHhhhhhhhhhhh-----HHhHHHHHHhhhhhhhhhhcchhHHHHHHH
Q 030034 50 MHRIISE-NRHAI-DDNTHLQRELTASKDEIHRLGQIIPKLRADK-----EAHTRELFDRGLKLEVELRASEPVRAEVVQ 122 (184)
Q Consensus 50 iqrLl~d-NqRLA-athvaLrqeL~aaq~El~~l~~~i~~i~ae~-----e~q~Rel~ek~~KmEaelRa~e~~k~El~Q 122 (184)
++..+.. |.+.+ .+-.-|.+++..++++|......+.+.+.++ +.+.....+-+..|++++-..+.=-+++..
T Consensus 156 ~~~~i~~~~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~ 235 (362)
T TIGR01010 156 GERLINRLNERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRS 235 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444 33222 3445677777777777777776676666654 334445555555555554433322222221
Q ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhc
Q 030034 123 L----RAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEIR 180 (184)
Q Consensus 123 ~----r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (184)
. |-+++.|.+....|..+++...+.+.. +..+.+|...++.+.|..|..-++..|+
T Consensus 236 ~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~--~~~~~l~~~~~~~~~L~re~~~a~~~y~ 295 (362)
T TIGR01010 236 ITPEQNPQVPSLQARIKSLRKQIDEQRNQLSG--GLGDSLNEQTADYQRLVLQNELAQQQLK 295 (362)
T ss_pred hCCCCCCchHHHHHHHHHHHHHHHHHHHHhhc--CCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 223444444444444444443333321 1234688889999999999999888876
No 50
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=91.01 E-value=24 Score=37.59 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhh
Q 030034 39 LEEEIEIQRREMHRIISENRHA 60 (184)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRL 60 (184)
|+++|+.-..+|..+-..-..|
T Consensus 747 l~~~IaeL~~~i~~l~~~l~~l 768 (1353)
T TIGR02680 747 LDARLAAVDDELAELARELRAL 768 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444544444444443333333
No 51
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=90.96 E-value=1.7 Score=30.86 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=28.5
Q ss_pred hhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 105 KLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGL 144 (184)
Q Consensus 105 KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~l 144 (184)
-|++|+||-..+..||..+++....+..-=||--.+-+.|
T Consensus 5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL 44 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNREL 44 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999988776655444433333333
No 52
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.91 E-value=4 Score=34.91 Aligned_cols=8 Identities=13% Similarity=0.302 Sum_probs=3.0
Q ss_pred HHHHhhHH
Q 030034 69 RELTASKD 76 (184)
Q Consensus 69 qeL~aaq~ 76 (184)
+||+.++.
T Consensus 100 ~el~~l~~ 107 (206)
T PRK10884 100 NQVKTLTD 107 (206)
T ss_pred HHHHHHHH
Confidence 33333333
No 53
>PRK11546 zraP zinc resistance protein; Provisional
Probab=90.74 E-value=0.65 Score=38.04 Aligned_cols=52 Identities=15% Similarity=0.237 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhc
Q 030034 129 KLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEIR 180 (184)
Q Consensus 129 ~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (184)
+-...|++|.++=..|...++....|-+.|-+|..||..|++.|.-.|..|+
T Consensus 62 ~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 62 QTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRD 113 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677788888888888888999999999999999999999998888665
No 54
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=90.64 E-value=4 Score=37.08 Aligned_cols=84 Identities=24% Similarity=0.388 Sum_probs=60.9
Q ss_pred HHHHHhhhhhhhhhhcchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHH
Q 030034 97 RELFDRGLKLEVELRASEP---VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE----NKQLIAMRADIDGIR 169 (184)
Q Consensus 97 Rel~ek~~KmEaelRa~e~---~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d----~qqip~l~aEid~lr 169 (184)
+.|++++..|+-+|...+. ...++.-+.++|..|...+.++..+|+.+.++.+..+-+ .+.+..++.+.|.|+
T Consensus 134 ~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~h 213 (294)
T COG1340 134 RELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELH 213 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888877776653 445566666777777777777777777777777666544 355678889999999
Q ss_pred HHHHHhhhhhc
Q 030034 170 SELVEARFEIR 180 (184)
Q Consensus 170 qElqr~Raa~E 180 (184)
.++...+..++
T Consensus 214 e~~ve~~~~~~ 224 (294)
T COG1340 214 EEFVELSKKID 224 (294)
T ss_pred HHHHHHHHHhH
Confidence 98888777664
No 55
>PRK11519 tyrosine kinase; Provisional
Probab=90.52 E-value=8.3 Score=37.97 Aligned_cols=113 Identities=13% Similarity=0.217 Sum_probs=72.5
Q ss_pred HhhHHHHHHHHhhHHHHHHHhhhhhhhhhhh-----HHhHHHHHHhhhhhhhhhhcchhHHHHHHHH----HHHHHHHHH
Q 030034 62 DDNTHLQRELTASKDEIHRLGQIIPKLRADK-----EAHTRELFDRGLKLEVELRASEPVRAEVVQL----RAEVQKLNS 132 (184)
Q Consensus 62 athvaLrqeL~aaq~El~~l~~~i~~i~ae~-----e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~----r~e~q~L~~ 132 (184)
.+-.=|.++|...+.+|...-..+.+.+.++ +.+.+.+++....+++++...+...+++.+. |-.+
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v----- 341 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAY----- 341 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHH-----
Confidence 4445566666666666666655555555543 3445556666666655554433333333221 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhcc
Q 030034 133 SRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEIRY 181 (184)
Q Consensus 133 ~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 181 (184)
+.|..+.+.|.++++.+++....+|....++..|..+..-.+..|++
T Consensus 342 --~~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY~~ 388 (719)
T PRK11519 342 --RTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQ 388 (719)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667788888888999999999999999999999988888764
No 56
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=90.31 E-value=12 Score=36.70 Aligned_cols=84 Identities=21% Similarity=0.305 Sum_probs=48.6
Q ss_pred HHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhh----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 70 ELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELR----ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLT 145 (184)
Q Consensus 70 eL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelR----a~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~lt 145 (184)
++..++.++...-..+..+.+|-.. +--++.+||.|+. .+.-++.+|.-+|+....=+..|.++..++|.|.
T Consensus 135 ~~~~~re~~~~~~~~l~~leAe~~~----~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Ll 210 (546)
T KOG0977|consen 135 ERRGAREKLDDYLSRLSELEAEINT----LKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLL 210 (546)
T ss_pred HHhhhHHHHHHHhhhhhhhhhHHHH----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3334444444444445544444433 4455666766654 2334455555555555555678888888888888
Q ss_pred HHHHHHHHhhhh
Q 030034 146 KDVNRLEAENKQ 157 (184)
Q Consensus 146 qeL~r~~~d~qq 157 (184)
+||+=......+
T Consensus 211 eel~f~~~~h~~ 222 (546)
T KOG0977|consen 211 EELAFLKRIHKQ 222 (546)
T ss_pred HHHHHHHhccHH
Confidence 888776654443
No 57
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=90.13 E-value=4.3 Score=29.21 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Q 030034 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARF 177 (184)
Q Consensus 115 ~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra 177 (184)
.++..+.++...+.+....-..|+..=.+...-|..+..++ -.|++|++.|++|+.+.|+
T Consensus 9 ~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~---~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 9 TLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEEN---NKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhc
Confidence 34555555555555555555555444444444444444443 3578899999999988774
No 58
>PRK09039 hypothetical protein; Validated
Probab=89.65 E-value=16 Score=33.25 Aligned_cols=50 Identities=16% Similarity=0.281 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHHHHHHH-------HhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhh
Q 030034 37 MTLEEEIEIQRREMHRII-------SENRHAIDDNTHLQRELTASKDEIHRLGQIIP 86 (184)
Q Consensus 37 ~~LEe~La~Q~~EiqrLl-------~dNqRLAathvaLrqeL~aaq~El~~l~~~i~ 86 (184)
.-++++|..-..+|-.|- .-|..|-..-..|+.++.+++.+-.++.....
T Consensus 49 ~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 49 SGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888888888887765 34556666777778888877777776665544
No 59
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=89.12 E-value=3.1 Score=37.20 Aligned_cols=64 Identities=19% Similarity=0.302 Sum_probs=58.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHHHh
Q 030034 112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL----IAMRADIDGIRSELVEA 175 (184)
Q Consensus 112 a~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqi----p~l~aEid~lrqElqr~ 175 (184)
++..+..++.+.+..+.+|.+.-..|.+|++.-+.||.|.+.-++.+ |+-..|-|.|..||+..
T Consensus 170 ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 170 AIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999777776 88899999999999875
No 60
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=88.96 E-value=11 Score=32.18 Aligned_cols=37 Identities=16% Similarity=0.435 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR 150 (184)
Q Consensus 114 e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r 150 (184)
+..+.++..+...+..+...+++|..-+..+-..|..
T Consensus 80 ~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 80 ASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666777777777777777666666665
No 61
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=88.90 E-value=33 Score=35.99 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=20.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Q 030034 147 DVNRLEAENKQLIAMRADIDGIRSELVEARF 177 (184)
Q Consensus 147 eL~r~~~d~qqip~l~aEid~lrqElqr~Ra 177 (184)
++..+..++.++|.++.+++.++.++.-+=+
T Consensus 343 ~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~ 373 (1201)
T PF12128_consen 343 DIEQLIARVDQLPEWRNELENLQEQLDLLTS 373 (1201)
T ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4555566677777777777777776655433
No 62
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=88.85 E-value=26 Score=37.07 Aligned_cols=61 Identities=20% Similarity=0.279 Sum_probs=37.6
Q ss_pred HHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030034 96 TRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENK 156 (184)
Q Consensus 96 ~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~q 156 (184)
.+++.++...+|..--..+-++.|+.++..+++++...--..+..+++..+.|..+..++.
T Consensus 740 ~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~ 800 (1074)
T KOG0250|consen 740 AREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELK 800 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4445555555555555567777888888888877776666666666655555555544433
No 63
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=88.71 E-value=18 Score=32.71 Aligned_cols=104 Identities=13% Similarity=0.209 Sum_probs=63.6
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 65 THLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGL 144 (184)
Q Consensus 65 vaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~l 144 (184)
..|+++|...+.++..+....+ ++--.|..+-.++..++..| +.|+..+...+ ...-..+..++..+
T Consensus 257 ~~l~~~l~~le~~l~~l~~~y~----~~hP~v~~l~~~i~~l~~~l------~~e~~~~~~~~---~~~~~~~~~~~~~l 323 (444)
T TIGR03017 257 QNLKTDIARAESKLAELSQRLG----PNHPQYKRAQAEINSLKSQL------NAEIKKVTSSV---GTNSRILKQREAEL 323 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC----CCCcHHHHHHHHHHHHHHHH------HHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3566666666666665544332 34444444444444444433 22333332222 22223455667778
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhcc
Q 030034 145 TKDVNRLEAENKQLIAMRADIDGIRSELVEARFEIRY 181 (184)
Q Consensus 145 tqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 181 (184)
...++..+.+...+|....++..|..|+.-++..|++
T Consensus 324 ~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~y~~ 360 (444)
T TIGR03017 324 REALENQKAKVLELNRQRDEMSVLQRDVENAQRAYDA 360 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888889999999999999999998887764
No 64
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=88.58 E-value=2.3 Score=31.10 Aligned_cols=49 Identities=20% Similarity=0.488 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHH
Q 030034 123 LRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDG-IRSE 171 (184)
Q Consensus 123 ~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~-lrqE 171 (184)
+..++..|.....||+.++.....++.+.+.+.++|-.+++..+- |..|
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~~eK~L~~E 50 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEEQEIEEIKAQYEKQLNTE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999988775 3554
No 65
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=88.38 E-value=21 Score=33.03 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 030034 157 QLIAMRADIDGIRSELVEARF 177 (184)
Q Consensus 157 qip~l~aEid~lrqElqr~Ra 177 (184)
.+..+..+++.++.++..+++
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~ 257 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQV 257 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555544444
No 66
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=88.09 E-value=11 Score=29.48 Aligned_cols=90 Identities=20% Similarity=0.314 Sum_probs=49.2
Q ss_pred HHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHH
Q 030034 49 EMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQ 128 (184)
Q Consensus 49 EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q 128 (184)
|+..|-.+.+++-..-......+..++.||.........++. .+-|+|+--+ ..-.+|..++.+..
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~---~YE~El~~Ha-----------~~~~~L~~lr~e~~ 69 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQ---KYERELVKHA-----------EDIKELQQLREELQ 69 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhH-----------HHHHHHHHHHHHHH
Confidence 444555555555555566666777777777766655554443 2444444333 22344555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 129 KLNSSRQELTTQIKGLTKDVNRLE 152 (184)
Q Consensus 129 ~L~~~RQELt~qvq~ltqeL~r~~ 152 (184)
.+.....+|...+......|....
T Consensus 70 ~~~~~~~~l~~~~~~a~~~l~~~e 93 (132)
T PF07926_consen 70 ELQQEINELKAEAESAKAELEESE 93 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555443
No 67
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.28 E-value=14 Score=36.48 Aligned_cols=86 Identities=19% Similarity=0.244 Sum_probs=70.8
Q ss_pred hHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 030034 92 KEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSE 171 (184)
Q Consensus 92 ~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqE 171 (184)
.+..-|+|++++.-.|++=...+.+|..-.-++.|+.|+.+.=..+.++-|.+.+.|.+.+++. -..-.|++.|+++
T Consensus 240 l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Ei---e~kEeE~e~lq~~ 316 (581)
T KOG0995|consen 240 LKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEI---EEKEEEIEKLQKE 316 (581)
T ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3445678999999888888888999999999999999999999999999999999999998874 3455677777777
Q ss_pred HHHhhhhhc
Q 030034 172 LVEARFEIR 180 (184)
Q Consensus 172 lqr~Raa~E 180 (184)
.-.++.-||
T Consensus 317 ~d~Lk~~Ie 325 (581)
T KOG0995|consen 317 NDELKKQIE 325 (581)
T ss_pred HHHHHHHHH
Confidence 777766665
No 68
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=87.13 E-value=32 Score=33.83 Aligned_cols=124 Identities=19% Similarity=0.285 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHhhHHHH----------------------HHHHhhHHHHHHHhhhhhhhhhhhHHhH
Q 030034 39 LEEEIEIQRREMHRIISENRHAIDDNTHLQ----------------------RELTASKDEIHRLGQIIPKLRADKEAHT 96 (184)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRLAathvaLr----------------------qeL~aaq~El~~l~~~i~~i~ae~e~q~ 96 (184)
|=+|||.=..=++-|=++|.+|-.+.--|| ..|..+..+...+..-|..++.|-+. .
T Consensus 47 LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~e-l 125 (546)
T KOG0977|consen 47 LNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKE-L 125 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-H
Confidence 445666666667777777777765544333 33444444444444555555555443 2
Q ss_pred HHHHHhhh--------hhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 030034 97 RELFDRGL--------KLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRA 163 (184)
Q Consensus 97 Rel~ek~~--------KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~a 163 (184)
+..+++.. ++--.+-....+.+|+..+...+..|...-..|..+.-.|..+|++++....+=-.++-
T Consensus 126 r~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~ 200 (546)
T KOG0977|consen 126 RKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRV 200 (546)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333331 12222445567778888888888888888888888888888888888876665444433
No 69
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=87.10 E-value=13 Score=29.27 Aligned_cols=89 Identities=15% Similarity=0.315 Sum_probs=45.1
Q ss_pred HHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHH
Q 030034 50 MHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQK 129 (184)
Q Consensus 50 iqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~ 129 (184)
|-.|+..-++-...+-.|-..+.....|+.++...+..++..-+ ....|+..+..+...
T Consensus 40 i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~---------------------~~ere~~~~~~~~~~ 98 (151)
T PF11559_consen 40 IYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLE---------------------ELERELASAEEKERQ 98 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
Confidence 44444444454555555555555555555555444444433322 233444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 030034 130 LNSSRQELTTQIKGLTKDVNRLEAENKQLI 159 (184)
Q Consensus 130 L~~~RQELt~qvq~ltqeL~r~~~d~qqip 159 (184)
|...-..+...+.....|++|.+...+++-
T Consensus 99 l~~~~~~~~~~~k~~kee~~klk~~~~~~~ 128 (151)
T PF11559_consen 99 LQKQLKSLEAKLKQEKEELQKLKNQLQQRK 128 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555566666666666665555543
No 70
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=87.06 E-value=20 Score=31.47 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030034 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ 157 (184)
Q Consensus 118 ~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qq 157 (184)
.++...+.++..+......+.+++..+..++..++.+..+
T Consensus 196 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~ 235 (423)
T TIGR01843 196 LELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQ 235 (423)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444433
No 71
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.99 E-value=28 Score=36.85 Aligned_cols=132 Identities=17% Similarity=0.256 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHh---HHHHHHhhhhhhhhhhcchhH
Q 030034 40 EEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAH---TRELFDRGLKLEVELRASEPV 116 (184)
Q Consensus 40 Ee~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q---~Rel~ek~~KmEaelRa~e~~ 116 (184)
..+++....+..+=-.+=++|-.+|-.|.+++...+..+.-+...|.++.+|-+.. +.....-.-+..++|.-....
T Consensus 800 k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k 879 (1174)
T KOG0933|consen 800 KQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAK 879 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Confidence 34455555555555666678889999999999999999998888888777765532 122222222222222211111
Q ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 030034 117 R----AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVE 174 (184)
Q Consensus 117 k----~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr 174 (184)
- .|+.-.-.+.++.....++...+++.+..|+.+..++.. ..+.+++.|.+++-.
T Consensus 880 ~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~---~~~k~v~~l~~k~~w 938 (1174)
T KOG0933|consen 880 QRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKA---NARKEVEKLLKKHEW 938 (1174)
T ss_pred HHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHH---HHHHHHHHHHHhccc
Confidence 1 111122233344445555555666667777777666653 456667777666543
No 72
>PHA02562 46 endonuclease subunit; Provisional
Probab=85.79 E-value=30 Score=32.13 Aligned_cols=45 Identities=11% Similarity=0.251 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 030034 130 LNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVE 174 (184)
Q Consensus 130 L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr 174 (184)
|...+.+|..++..+...+..+.....++-.+...+..++.++..
T Consensus 304 l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~ 348 (562)
T PHA02562 304 IKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKIST 348 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444433333333333333333333333333333
No 73
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=85.78 E-value=17 Score=29.24 Aligned_cols=117 Identities=20% Similarity=0.187 Sum_probs=81.3
Q ss_pred HHHHHHHhhHHHHHHHhhhhhhh---hhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 66 HLQRELTASKDEIHRLGQIIPKL---RADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIK 142 (184)
Q Consensus 66 aLrqeL~aaq~El~~l~~~i~~i---~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq 142 (184)
+||-|...|..=...+..-+..+ ....|.+|.+|-.|+..+|.+|-.++.==.++...-.+..+..+.=.-|+.+|+
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq 83 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQ 83 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHH
Confidence 34444444444333333333222 346788899999999999999877666555555555555555554457999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhccc
Q 030034 143 GLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEIRYF 182 (184)
Q Consensus 143 ~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyE 182 (184)
.|-.+|..+...+...-.-..+++.-=.++-|-..++|.+
T Consensus 84 ~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~ 123 (143)
T PF12718_consen 84 LLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQE 123 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 9999999999998888887777777777777777776654
No 74
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.51 E-value=42 Score=33.76 Aligned_cols=109 Identities=23% Similarity=0.417 Sum_probs=61.7
Q ss_pred HHHhhHHHHHHHhhhhhhhhhhh------------------HHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHH
Q 030034 70 ELTASKDEIHRLGQIIPKLRADK------------------EAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLN 131 (184)
Q Consensus 70 eL~aaq~El~~l~~~i~~i~ae~------------------e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~ 131 (184)
++..+++||..++.+++..++-. -..=-..+.|+.+||+||+- ++.||--++.|-..|.
T Consensus 58 eyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq---~r~el~~~q~E~erl~ 134 (772)
T KOG0999|consen 58 EYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQ---LRQELTNVQEENERLE 134 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 44566677777776666554321 11122467889999999874 4555655555555555
Q ss_pred HHHHHHH-------HHHHHHHHHHH--------------HHHHh----hhhHHHHH---HHHHHHHHHHHHhhhhhcc
Q 030034 132 SSRQELT-------TQIKGLTKDVN--------------RLEAE----NKQLIAMR---ADIDGIRSELVEARFEIRY 181 (184)
Q Consensus 132 ~~RQELt-------~qvq~ltqeL~--------------r~~~d----~qqip~l~---aEid~lrqElqr~Raa~Ey 181 (184)
..-+++- .+--.|..||. -+..+ -+||..|+ -|.+|+++|+.|+--.+||
T Consensus 135 ~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~el 212 (772)
T KOG0999|consen 135 KVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETEL 212 (772)
T ss_pred HHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 5444432 22222222222 11111 24555555 4889999999888766665
No 75
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=85.40 E-value=35 Score=32.51 Aligned_cols=97 Identities=18% Similarity=0.242 Sum_probs=63.1
Q ss_pred HHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhc------chhHHHHHHHHHH
Q 030034 52 RIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRA------SEPVRAEVVQLRA 125 (184)
Q Consensus 52 rLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa------~e~~k~El~Q~r~ 125 (184)
..+....-+..-.--++.++...+.|+.--+.-+..+-..+|.-|-.|=.++.. ..+-. .+.++.|..+++.
T Consensus 211 ~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~--~~~~~~~~~~el~~l~~E~~~~~e 288 (511)
T PF09787_consen 211 EYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLE--EGFDSSTNSIELEELKQERDHLQE 288 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc--cccccccchhcchhhHHHHHHHHH
Confidence 333444444445555666666777777777666666777788777777664444 12222 5678889998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 126 EVQKLNSSRQELTTQIKGLTKDVNR 150 (184)
Q Consensus 126 e~q~L~~~RQELt~qvq~ltqeL~r 150 (184)
+++.|...=+.|..+++.+..++..
T Consensus 289 e~~~l~~Qi~~l~~e~~d~e~~~~~ 313 (511)
T PF09787_consen 289 EIQLLERQIEQLRAELQDLEAQLEG 313 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888887776667776666655544
No 76
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=85.33 E-value=7.3 Score=35.03 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHhhhhhhhhh
Q 030034 66 HLQRELTASKDEIHRLGQIIPKLRA 90 (184)
Q Consensus 66 aLrqeL~aaq~El~~l~~~i~~i~a 90 (184)
.|..++..++.|.......+..++.
T Consensus 13 ~l~~~~~~~~~E~~~Y~~fL~~l~~ 37 (314)
T PF04111_consen 13 QLDKQLEQAEKERDTYQEFLKKLEE 37 (314)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667777777787777777777763
No 77
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=85.19 E-value=29 Score=31.43 Aligned_cols=89 Identities=24% Similarity=0.327 Sum_probs=36.9
Q ss_pred HhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 62 DDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQI 141 (184)
Q Consensus 62 athvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qv 141 (184)
..+..|+.|....-..+..++...+.++.-.+. +..=+....+.-.++...+ -.|+.+++.++.++...=.....++
T Consensus 151 ~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~-L~~e~~~L~~~~~e~~~~d--~~eL~~lk~~l~~~~~ei~~~~~~l 227 (312)
T smart00787 151 ENLEGLKEDYKLLMKELELLNSIKPKLRDRKDA-LEEELRQLKQLEDELEDCD--PTELDRAKEKLKKLLQEIMIKVKKL 227 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555443332 1111222233333333322 1234445544444433333333344
Q ss_pred HHHHHHHHHHHH
Q 030034 142 KGLTKDVNRLEA 153 (184)
Q Consensus 142 q~ltqeL~r~~~ 153 (184)
..+.++|+...+
T Consensus 228 ~e~~~~l~~l~~ 239 (312)
T smart00787 228 EELEEELQELES 239 (312)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 78
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=85.08 E-value=36 Score=32.41 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 030034 158 LIAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 158 ip~l~aEid~lrqElqr~Raa~ 179 (184)
+|.|+.|.+.++.|++.++.-|
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi 297 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQI 297 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888887766
No 79
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=85.06 E-value=0.65 Score=38.85 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHH
Q 030034 37 MTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKD 76 (184)
Q Consensus 37 ~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~ 76 (184)
++||.+| .|-..|...+|||-++---||||| ..++
T Consensus 17 alLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl-~V~e 51 (166)
T PF04880_consen 17 ALLESEL----DEKENLREEVQRLKDELRDLKQEL-IVQE 51 (166)
T ss_dssp HHHHHHH----HHHHHHHHCH-------------------
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 5788888 788899999999999999999999 4443
No 80
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=83.79 E-value=30 Score=31.69 Aligned_cols=74 Identities=24% Similarity=0.331 Sum_probs=43.2
Q ss_pred hhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhc
Q 030034 104 LKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEIR 180 (184)
Q Consensus 104 ~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (184)
.|.|.+--.+-+|+.|.+-+.-.+..|...||-|+-.+|.-+.-+.=+ -.|+-.-+..|+.|-+|+.++++-+|
T Consensus 53 qK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~l---EgQl~s~Kkqie~Leqelkr~KsELE 126 (307)
T PF10481_consen 53 QKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFL---EGQLNSCKKQIEKLEQELKRCKSELE 126 (307)
T ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555566666666666666666666666665555444433322 23555566666666666666666554
No 81
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=83.40 E-value=14 Score=26.52 Aligned_cols=48 Identities=15% Similarity=0.109 Sum_probs=37.8
Q ss_pred hhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhh
Q 030034 58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLK 105 (184)
Q Consensus 58 qRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~K 105 (184)
++|-+++.+|+-.|..+-..+...-.....+..|+|.-++.|-+....
T Consensus 1 ~~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e 48 (69)
T PF14197_consen 1 QKLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEE 48 (69)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888888888888998877776655443
No 82
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=83.11 E-value=36 Score=30.94 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhcc
Q 030034 156 KQLIAMRADIDGIRSELVEARFEIRY 181 (184)
Q Consensus 156 qqip~l~aEid~lrqElqr~Raa~Ey 181 (184)
..+-.+.+++...+.++..++..++|
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~~~l~~ 252 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELENKLNL 252 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35666777888888888887777764
No 83
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.78 E-value=15 Score=31.44 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=10.8
Q ss_pred HhhhhhhhhhhcchhHHHHHHHHHHH
Q 030034 101 DRGLKLEVELRASEPVRAEVVQLRAE 126 (184)
Q Consensus 101 ek~~KmEaelRa~e~~k~El~Q~r~e 126 (184)
++.-++|.++- .+++++..++.+
T Consensus 93 ~rlp~le~el~---~l~~~l~~~~~~ 115 (206)
T PRK10884 93 TRVPDLENQVK---TLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHhH
Confidence 44455555543 333444444444
No 84
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=82.62 E-value=8.4 Score=31.43 Aligned_cols=63 Identities=22% Similarity=0.346 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 030034 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 117 k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (184)
..++....+.+.++...+..|.+|+....+.|..++..+.-+..|+++|+.|+.++..+-..+
T Consensus 12 gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~ 74 (155)
T PF06810_consen 12 GKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEY 74 (155)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556778888889999999999999999999999999999999999999998887544433
No 85
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=82.62 E-value=19 Score=33.97 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEA 153 (184)
Q Consensus 115 ~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~ 153 (184)
.+++=+.-+..+..+|.....+|..++..+.++|++++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 166 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQN 166 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444433
No 86
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=82.56 E-value=0.4 Score=46.94 Aligned_cols=114 Identities=18% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhh---HHhhHHHHHHHHhhHHHHHHHhhh---hhhhh----------h---hhHHhHHHHHHhhhh
Q 030034 45 IQRREMHRIISENRHA---IDDNTHLQRELTASKDEIHRLGQI---IPKLR----------A---DKEAHTRELFDRGLK 105 (184)
Q Consensus 45 ~Q~~EiqrLl~dNqRL---AathvaLrqeL~aaq~El~~l~~~---i~~i~----------a---e~e~q~Rel~ek~~K 105 (184)
....||..|-..|+-| |..-.+||.||-..++.-.++... +.+.+ . +=+-+...++++...
T Consensus 271 ~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~ 350 (713)
T PF05622_consen 271 ELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAM 350 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445565666666544 456667777777666654443322 22111 0 112244667888899
Q ss_pred hhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 030034 106 LEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158 (184)
Q Consensus 106 mEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqi 158 (184)
||.+++...+++..+...+..|..|...+.+.+.++..+..|+.++...+..+
T Consensus 351 LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l 403 (713)
T PF05622_consen 351 LEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEAL 403 (713)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888888888888777666543
No 87
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=82.55 E-value=25 Score=28.66 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=24.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030034 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ 157 (184)
Q Consensus 113 ~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qq 157 (184)
.|.-|+|+.-+..++..+++.++.|.+.+..++.|-.-+....|+
T Consensus 47 aEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~ 91 (140)
T PF10473_consen 47 AENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQK 91 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666655555444333333333
No 88
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=82.44 E-value=27 Score=32.26 Aligned_cols=45 Identities=20% Similarity=0.241 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhcc
Q 030034 137 LTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEIRY 181 (184)
Q Consensus 137 Lt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 181 (184)
+-.+.+.|.++++.+++.+..+|....++..|..|++-.|+.|+-
T Consensus 347 l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~ 391 (458)
T COG3206 347 LEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYET 391 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHH
Confidence 788889999999999999999999999999999999999998873
No 89
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=82.39 E-value=10 Score=28.92 Aligned_cols=63 Identities=14% Similarity=0.244 Sum_probs=48.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 030034 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 113 ~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (184)
.-.+..+|..++.+.-.+...-++|+.+++.++++...-.. -|.+..+|+.++.+++..|.-.
T Consensus 12 ~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~----~~~~~~~l~~~~~~lk~~r~~~ 74 (106)
T PF05837_consen 12 SRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE----DEELSEKLEKLEKELKKSRQRW 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----chHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777788888888888888888888877554444 6788999999999998887644
No 90
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=82.35 E-value=15 Score=26.07 Aligned_cols=95 Identities=13% Similarity=0.278 Sum_probs=59.5
Q ss_pred HHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 67 LQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTK 146 (184)
Q Consensus 67 LrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltq 146 (184)
.+++|+.+..++......+..+....+.....+.... . -..+-..-....-+..+...|..+...-..+..++....+
T Consensus 3 a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~-~-~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~ 80 (123)
T PF02050_consen 3 AEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQ-Q-GVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQARE 80 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------S-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777767766666665533333333 2 3334444456666677777777777777777777777777
Q ss_pred HHHHHHHhhhhHHHHHH
Q 030034 147 DVNRLEAENKQLIAMRA 163 (184)
Q Consensus 147 eL~r~~~d~qqip~l~a 163 (184)
.|..+..+.+.+--|+.
T Consensus 81 ~l~~a~~~~k~~e~L~e 97 (123)
T PF02050_consen 81 ELQEARRERKKLEKLKE 97 (123)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777777664
No 91
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=82.12 E-value=48 Score=31.68 Aligned_cols=87 Identities=21% Similarity=0.319 Sum_probs=59.9
Q ss_pred hhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 030034 89 RADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGI 168 (184)
Q Consensus 89 ~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~l 168 (184)
..+=+-=.++|-...-.++.|=-..+.+...+..++.-..|......++....+.+.++|..+......+..+..+++.+
T Consensus 279 ~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l 358 (563)
T TIGR00634 279 LTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKL 358 (563)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 33333333444444445555555566677777777777777777788888888888888888887777888888888887
Q ss_pred HHHHHHh
Q 030034 169 RSELVEA 175 (184)
Q Consensus 169 rqElqr~ 175 (184)
++++..+
T Consensus 359 ~~~l~~~ 365 (563)
T TIGR00634 359 EEELDKA 365 (563)
T ss_pred HHHHHHH
Confidence 7777643
No 92
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=81.71 E-value=29 Score=28.77 Aligned_cols=119 Identities=13% Similarity=0.175 Sum_probs=81.4
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhh-hhhhhhhhHHhHHHHHHhhhhhhhhhh
Q 030034 33 HFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQI-IPKLRADKEAHTRELFDRGLKLEVELR 111 (184)
Q Consensus 33 ~p~p~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~-i~~i~ae~e~q~Rel~ek~~KmEaelR 111 (184)
||--.+|++|=..-...+..--..+.-..+---...++|..|+.|.+.+..- ..++.+|-+ .+..++|++|+
T Consensus 33 ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~-------~~~~~~ea~L~ 105 (155)
T PRK06569 33 PKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFL-------IKKKNLEQDLK 105 (155)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 4555678877666666666655566666666667778888888887777644 566666555 45577888887
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 030034 112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIR 169 (184)
Q Consensus 112 a~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lr 169 (184)
. .+..|+.-.-..+. .-|-+.+.++-.|+.++. .++...+|+++-|+
T Consensus 106 ~--~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~i~------~k~~~~~~~~~~~~ 152 (155)
T PRK06569 106 N--SINQNIEDINLAAK---QFRTNKSEAIIKLAVNII------EKIAGTKADMNLLQ 152 (155)
T ss_pred H--HHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHH------HHHhCccccHHHHh
Confidence 5 56677766666666 456667778888888877 56667777776654
No 93
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=81.48 E-value=65 Score=32.74 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhhhhh
Q 030034 163 ADIDGIRSELVEARFEI 179 (184)
Q Consensus 163 aEid~lrqElqr~Raa~ 179 (184)
.|.|+|++||.|+---+
T Consensus 121 vefE~~Khei~rl~Ee~ 137 (717)
T PF09730_consen 121 VEFEGLKHEIKRLEEEI 137 (717)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47777777776654433
No 94
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=81.46 E-value=31 Score=29.00 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHH
Q 030034 40 EEEIEIQRREMHRIISENRHAID 62 (184)
Q Consensus 40 Ee~La~Q~~EiqrLl~dNqRLAa 62 (184)
-++|..-..+|..+..+|..|..
T Consensus 19 ~~~L~~~~~~l~~~~~~~~~l~~ 41 (302)
T PF10186_consen 19 NNRLLELRSELQQLKEENEELRR 41 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666665554
No 95
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=81.46 E-value=12 Score=30.01 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Q 030034 136 ELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARF 177 (184)
Q Consensus 136 ELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra 177 (184)
+|..++..+..-|..+++....++ ..|++.+..++...+.
T Consensus 120 ~l~~e~~~l~~kL~~l~~~~~~vs--~ee~~~~~~~~~~~~k 159 (169)
T PF07106_consen 120 ELEEEIEELEEKLEKLRSGSKPVS--PEEKEKLEKEYKKWRK 159 (169)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHHHH
Confidence 333333334444444444333322 3455555555555544
No 96
>PF13514 AAA_27: AAA domain
Probab=81.42 E-value=71 Score=33.15 Aligned_cols=132 Identities=13% Similarity=0.238 Sum_probs=67.7
Q ss_pred HHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhh--------------HHhHHHHHHhhhhhhhhhhcc
Q 030034 48 REMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADK--------------EAHTRELFDRGLKLEVELRAS 113 (184)
Q Consensus 48 ~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~--------------e~q~Rel~ek~~KmEaelRa~ 113 (184)
.+.+.....-..|......+.+++...+.++..+...+...+.+- ...+.+.++....+-..++..
T Consensus 666 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~~l~~~~~~~ 745 (1111)
T PF13514_consen 666 EEWEQAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELLEELREALAEI 745 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433333333221 123333444444444444444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 030034 114 EPVRAEVVQLRAEVQKLNSSRQELT-------------TQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 114 e~~k~El~Q~r~e~q~L~~~RQELt-------------~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (184)
..++..+.+...++..+...-..|. .-+..|...|..++...+++-.+..+++.+++++..+...+
T Consensus 746 ~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l 824 (1111)
T PF13514_consen 746 RELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQEQLEELEEELEQAEEEL 824 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443333332 45667777788888777777778888888777777766554
No 97
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=81.05 E-value=1e+02 Score=34.67 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhh
Q 030034 40 EEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVEL 110 (184)
Q Consensus 40 Ee~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEael 110 (184)
..+++.-..|+..|=.+|.-|-.|-.-|.+|+...-.|.+.++.....+++=....-+.......++|..+
T Consensus 737 ~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i 807 (1822)
T KOG4674|consen 737 NEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRI 807 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888999999999999999999999999999999999999999998888887788777777777544
No 98
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=81.03 E-value=63 Score=32.84 Aligned_cols=32 Identities=13% Similarity=0.036 Sum_probs=22.6
Q ss_pred CChhhhHHHHHHHHHHHHHHHHhhhhhHHhhH
Q 030034 34 FHPMTLEEEIEIQRREMHRIISENRHAIDDNT 65 (184)
Q Consensus 34 p~p~~LEe~La~Q~~EiqrLl~dNqRLAathv 65 (184)
+.|.+||.|+.+=..|+..|-.+=..|=+.+.
T Consensus 352 ~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~ 383 (717)
T PF09730_consen 352 NGLEILECKYKVAVSEVIQLKAELKALKSKYN 383 (717)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999998888887555444443333
No 99
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=80.62 E-value=18 Score=31.65 Aligned_cols=45 Identities=16% Similarity=0.205 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHhhhhhccc
Q 030034 138 TTQIKGLTKDVNRLEAE----NKQLIAMRADIDGIRSELVEARFEIRYF 182 (184)
Q Consensus 138 t~qvq~ltqeL~r~~~d----~qqip~l~aEid~lrqElqr~Raa~EyE 182 (184)
-.+++...++|.+++.+ .+|.-.+.-|.|.|-.|++++|..++-.
T Consensus 164 ~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 164 ETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcc
Confidence 34444555555555544 3567777788888888888888887643
No 100
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=80.58 E-value=46 Score=30.41 Aligned_cols=94 Identities=21% Similarity=0.348 Sum_probs=52.3
Q ss_pred HHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030034 76 DEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN 155 (184)
Q Consensus 76 ~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~ 155 (184)
+|+.--....+.-+-+.=.++|++.+++. .++.+-...-.+|+.|-.-|.++-++++.+.++........
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~----------elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~ 99 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQ----------ELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKR 99 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333334444444456666666553 45666666667777777777777777777777776666544
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhh
Q 030034 156 KQLIAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 156 qqip~l~aEid~lrqElqr~Raa~ 179 (184)
.-.-...-.++.+..+|+++...|
T Consensus 100 ~~~~~~~~~~~~ler~i~~Le~~~ 123 (294)
T COG1340 100 NEFNLGGRSIKSLEREIERLEKKQ 123 (294)
T ss_pred hhhhccCCCHHHHHHHHHHHHHHH
Confidence 422122233444455555444433
No 101
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=80.51 E-value=37 Score=29.36 Aligned_cols=114 Identities=14% Similarity=0.229 Sum_probs=59.0
Q ss_pred HHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 61 IDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQ 140 (184)
Q Consensus 61 AathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~q 140 (184)
......+.+++..++..+......+...+.+-+ ....|+++..-=..++ +..+.++.++++++..+. .++..+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~-R~~~L~~~g~iS~~~~---d~~~~~~~~a~~~l~~~~---~~~~~~ 161 (327)
T TIGR02971 89 ARAAAKLFKDVAAQQATLNRLEAELETAQREVD-RYRSLFRDGAVSASDL---DSKALKLRTAEEELEEAL---ASRSEQ 161 (327)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCccHHHH---HHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 334445666666666666666665555554443 3556666665544444 344445555555444443 223233
Q ss_pred HHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHhhhhhcc
Q 030034 141 IKGLTKDVNRLEA--ENKQLIAMRADIDGIRSELVEARFEIRY 181 (184)
Q Consensus 141 vq~ltqeL~r~~~--d~qqip~l~aEid~lrqElqr~Raa~Ey 181 (184)
+.....++..... ...++-...+++..++..+..+...++|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~l~~ 204 (327)
T TIGR02971 162 IDGARAALASLAEEVRETDVDLAQAEVKSALEAVQQAEALLEL 204 (327)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444433322 2234455566777777777666655543
No 102
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=79.98 E-value=30 Score=27.90 Aligned_cols=50 Identities=8% Similarity=0.244 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhh
Q 030034 38 TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPK 87 (184)
Q Consensus 38 ~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~ 87 (184)
-+.+.+..-+.|+..+-..+.-+......++.+....+++++....-+.+
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 134 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDS 134 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666665555444444444433
No 103
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=79.78 E-value=13 Score=26.14 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 129 KLNSSRQELTTQIKGLTKDVNRLE 152 (184)
Q Consensus 129 ~L~~~RQELt~qvq~ltqeL~r~~ 152 (184)
+|.+-=|.|.++|..|+.|+.-++
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr 30 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALR 30 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444445555555444333
No 104
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=79.76 E-value=50 Score=30.31 Aligned_cols=98 Identities=22% Similarity=0.328 Sum_probs=67.4
Q ss_pred HHHHHHhhhh----hHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHH
Q 030034 50 MHRIISENRH----AIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRA 125 (184)
Q Consensus 50 iqrLl~dNqR----LAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~ 125 (184)
|.+-+-|=|| |+--.|.|+.|+-++-..|...=.-+.+.=.|+|. +|-+|+..|..
T Consensus 155 IEKSvKDLqRctvSL~RYr~~lkee~d~S~k~ik~~F~~l~~cL~dREv--------------------aLl~EmdkVK~ 214 (302)
T PF07139_consen 155 IEKSVKDLQRCTVSLTRYRVVLKEEMDSSIKKIKQTFAELQSCLMDREV--------------------ALLAEMDKVKA 214 (302)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHH
Confidence 4455555555 44557888888888776665554444444445554 78899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 030034 126 EVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIR 169 (184)
Q Consensus 126 e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lr 169 (184)
|+..+..+||.=.-.+..+|.=-.+. +| .||-.|+|||.-.-
T Consensus 215 EAmeiL~aRqkkAeeLkrltd~A~~M-sE-~Ql~ELRadIK~fv 256 (302)
T PF07139_consen 215 EAMEILDARQKKAEELKRLTDRASQM-SE-EQLAELRADIKHFV 256 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-CH-HHHHHHHHHHHHHh
Confidence 99999999998887777777543322 22 47788888886543
No 105
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=79.67 E-value=2.8 Score=31.88 Aligned_cols=43 Identities=19% Similarity=0.369 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 030034 137 LTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 137 Lt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (184)
+.++++.+.+++...+.-..+++.++++++.+.+++......+
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l 46 (144)
T PF04350_consen 4 LQAQIQQLQQELAQLKEKVANLEELKKQLEQLEQQLEELLKKL 46 (144)
T ss_dssp --------HHHHHHTGGG-SSHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC
Confidence 4556677777777777777777777777777777777665544
No 106
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=79.64 E-value=36 Score=28.62 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (184)
Q Consensus 114 e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqe 147 (184)
+.++.++.+++.++......-.++-.+++.....
T Consensus 73 ~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~ 106 (302)
T PF10186_consen 73 ERLRERIERLRKRIEQKRERLEELRESLEQRRSR 106 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555444444444333333333333333
No 107
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.91 E-value=35 Score=35.55 Aligned_cols=83 Identities=23% Similarity=0.349 Sum_probs=40.5
Q ss_pred hHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 60 AIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTT 139 (184)
Q Consensus 60 LAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~ 139 (184)
|-+--.-|.+||.+...-+|.|+.-+-+++...--+--++-.-...-|-.+--++.+.+.+.-...-.++|+-.+|+|-.
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ 514 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNH 514 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 33444557777777777777777777777665443332222222222222222233333333333333444444555544
Q ss_pred HHH
Q 030034 140 QIK 142 (184)
Q Consensus 140 qvq 142 (184)
|+.
T Consensus 515 qlk 517 (1118)
T KOG1029|consen 515 QLK 517 (1118)
T ss_pred HHH
Confidence 443
No 108
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=78.41 E-value=64 Score=30.84 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=20.1
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhh
Q 030034 152 EAENKQLIAMRADIDGIRSELVEARF 177 (184)
Q Consensus 152 ~~d~qqip~l~aEid~lrqElqr~Ra 177 (184)
..+-+++-.|++.=..|+++|.+++.
T Consensus 220 ~~~q~~l~eL~~~~~~L~~~Ias~e~ 245 (420)
T COG4942 220 SADQKKLEELRANESRLKNEIASAEA 245 (420)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 35667778888888888888888873
No 109
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=78.41 E-value=22 Score=28.52 Aligned_cols=60 Identities=20% Similarity=0.381 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Q 030034 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARF 177 (184)
Q Consensus 117 k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra 177 (184)
..|+.+++.++..|......|.+++..|++.+.-..- ..+|-.|..|+..|..-|..+|+
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el-~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSEPTNEEL-REEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444443322111 23444555555555555555554
No 110
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=78.37 E-value=1e+02 Score=33.12 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=35.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 030034 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADID 166 (184)
Q Consensus 113 ~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid 166 (184)
.+.+.+++.+++.++..+.....++...+..+.+++.++.....+...+.....
T Consensus 923 ~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~~~a~~~~~~~~ 976 (1353)
T TIGR02680 923 VDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKRAEADATLDERA 976 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777777777777777666666554444443333
No 111
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=78.16 E-value=24 Score=29.14 Aligned_cols=80 Identities=21% Similarity=0.288 Sum_probs=27.1
Q ss_pred hhhhHHhHHHHHHhhhhhhhhhhc----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 030034 89 RADKEAHTRELFDRGLKLEVELRA----SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRAD 164 (184)
Q Consensus 89 ~ae~e~q~Rel~ek~~KmEaelRa----~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aE 164 (184)
+++...++-.+.++..++++.+.. +..++.++.++...+..|...=.++..-++.++.|+.-++.. .-.+...
T Consensus 90 ~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~---~~~~e~k 166 (194)
T PF08614_consen 90 KGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQ---LNMLEEK 166 (194)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred cccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 334444444455555555544443 444555555555555555555555555555555555444432 2333344
Q ss_pred HHHHHHH
Q 030034 165 IDGIRSE 171 (184)
Q Consensus 165 id~lrqE 171 (184)
+..|..|
T Consensus 167 ~~~l~~E 173 (194)
T PF08614_consen 167 LRKLEEE 173 (194)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 112
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.86 E-value=18 Score=33.10 Aligned_cols=73 Identities=16% Similarity=0.246 Sum_probs=59.1
Q ss_pred hhhhhhhcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHhhh
Q 030034 105 KLEVELRASEPVRAEVVQLRAEVQ-KLNSSRQELTTQIKGLTKDVNRLEAE----NKQLIAMRADIDGIRSELVEARF 177 (184)
Q Consensus 105 KmEaelRa~e~~k~El~Q~r~e~q-~L~~~RQELt~qvq~ltqeL~r~~~d----~qqip~l~aEid~lrqElqr~Ra 177 (184)
|+|++-++.+..-.++.+.-..++ .+...+|.|+.|-+.+..+|..+.+- ...+-.+..||.++.+++-..+.
T Consensus 119 k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~lvln~~~ 196 (300)
T KOG2629|consen 119 KLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNTLVQLSRNIEKLESEINTIKQLVLNMSN 196 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccc
Confidence 788888888887777777666654 46678899999999999999888877 77788899999999999876554
No 113
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=76.81 E-value=40 Score=30.53 Aligned_cols=33 Identities=12% Similarity=0.268 Sum_probs=20.3
Q ss_pred hHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhh
Q 030034 60 AIDDNTHLQRELTASKDEIHRLGQIIPKLRADK 92 (184)
Q Consensus 60 LAathvaLrqeL~aaq~El~~l~~~i~~i~ae~ 92 (184)
...+..-|..+|...+++|......+.+.+.++
T Consensus 169 ~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 201 (444)
T TIGR03017 169 AQKAALWFVQQIAALREDLARAQSKLSAYQQEK 201 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344555666666666666666666666655554
No 114
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=76.71 E-value=23 Score=25.69 Aligned_cols=59 Identities=24% Similarity=0.370 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 030034 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 118 ~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (184)
.|+.-+..+|+||.+.=-+...+++.|..| +-.+-++||.+-...-....++-.+|..+
T Consensus 2 ~d~~eLk~evkKL~~~A~~~kmdLHDLaEd---LP~~w~~i~~vA~~ty~a~~~l~~ak~~L 60 (66)
T PF05082_consen 2 SDIEELKKEVKKLNRKATQAKMDLHDLAED---LPTNWEEIPEVAQKTYDAYAELDEAKAEL 60 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---TTTTGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778889999999999999999999999 67888889988877777777777776643
No 115
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=76.42 E-value=32 Score=33.35 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhH
Q 030034 38 TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASK 75 (184)
Q Consensus 38 ~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq 75 (184)
-|=-++..-+.+++.|+.||..|.+..-.||+......
T Consensus 63 Tlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id 100 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLISENEALKAENERLQKREQSID 100 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 34455666778888888888888888887776554444
No 116
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=75.98 E-value=17 Score=25.68 Aligned_cols=28 Identities=39% Similarity=0.616 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 122 QLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (184)
Q Consensus 122 Q~r~e~q~L~~~RQELt~qvq~ltqeL~ 149 (184)
++-+||+.|.+-=..|+..|..+..|+.
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~ 34 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQ 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 117
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=75.98 E-value=0.86 Score=44.67 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhh
Q 030034 156 KQLIAMRADIDGIRSELVEARFE 178 (184)
Q Consensus 156 qqip~l~aEid~lrqElqr~Raa 178 (184)
..||.|-++...++.|+.++|..
T Consensus 257 ~~i~~LE~en~~l~~Elk~Lr~~ 279 (722)
T PF05557_consen 257 AHIRELEKENRRLREELKHLRQS 279 (722)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666553
No 118
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=75.90 E-value=23 Score=31.87 Aligned_cols=124 Identities=22% Similarity=0.273 Sum_probs=65.8
Q ss_pred HHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHH------------------hhhhhhhh---hhhHHhHHHHHHhhhhhh
Q 030034 49 EMHRIISENRHAIDDNTHLQRELTASKDEIHRL------------------GQIIPKLR---ADKEAHTRELFDRGLKLE 107 (184)
Q Consensus 49 EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l------------------~~~i~~i~---ae~e~q~Rel~ek~~KmE 107 (184)
=+++|+.----+..+|..+-.|..++-..|.-- ...++++. +.+--++|..+.-+...|
T Consensus 58 ~L~~LIk~EK~vi~s~e~~are~~~~A~~L~~WG~~edddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E 137 (271)
T PF13805_consen 58 KLQRLIKAEKSVIRSLESAARERKAAAKQLSEWGEQEDDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNRE 137 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555554444433322 22222221 344556666666666677
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhcc
Q 030034 108 VELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEIRY 181 (184)
Q Consensus 108 aelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 181 (184)
..|. |.|+=-..+..+|++|... .--+.++..|.+||.++.+++.- --|+|.++..+ ..+.+|.|
T Consensus 138 ~sl~---p~R~~r~~l~d~I~kLk~k-~P~s~kl~~LeqELvraEae~lv---aEAqL~n~kR~--~lKEa~~~ 202 (271)
T PF13805_consen 138 ESLQ---PSRDRRRKLQDEIAKLKYK-DPQSPKLVVLEQELVRAEAENLV---AEAQLSNIKRQ--KLKEAYSL 202 (271)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHH--TTTTTHHHHHHHHHHHHHHHHH---HHHHHHHHHHH--HHHHHHHH
T ss_pred HHHh---HHHHHhHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHhhH---HHHHHHHhhHH--HHHHHHHH
Confidence 6554 4555555666777776543 33356677777777776666542 22456666654 33444443
No 119
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=75.88 E-value=30 Score=25.65 Aligned_cols=58 Identities=28% Similarity=0.388 Sum_probs=34.8
Q ss_pred hhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTK 146 (184)
Q Consensus 88 i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltq 146 (184)
|+..-|.....+-.|. .....+-.+-.+-.+..++..+++.|.+.|..+|.+|..+.+
T Consensus 7 ir~n~e~v~~~l~~R~-~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~ 64 (108)
T PF02403_consen 7 IRENPEEVRENLKKRG-GDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKK 64 (108)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHhCHHHHHHHHHHcC-CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 3334444334444343 444555555555566667777777777777777777777765
No 120
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=75.62 E-value=68 Score=29.69 Aligned_cols=27 Identities=4% Similarity=0.164 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhcc
Q 030034 155 NKQLIAMRADIDGIRSELVEARFEIRY 181 (184)
Q Consensus 155 ~qqip~l~aEid~lrqElqr~Raa~Ey 181 (184)
.+++...+++++.++.++..++..++|
T Consensus 290 ~~~l~~~~~~l~~~~~~l~~a~~~l~~ 316 (457)
T TIGR01000 290 KQEITDLNQKLLELESKIKSLKEDSQK 316 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344555555555555555555554443
No 121
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=75.34 E-value=17 Score=24.88 Aligned_cols=38 Identities=26% Similarity=0.526 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030034 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE 154 (184)
Q Consensus 117 k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d 154 (184)
+..+.++...+..|...-..|..++..|.+++..+.++
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555555555555555555555555555444
No 122
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=75.30 E-value=38 Score=30.47 Aligned_cols=64 Identities=17% Similarity=0.325 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 030034 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 116 ~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (184)
|-.=...+-.|..++...=..+..+...+.+|...++++..+.-.++.-+++|+.|||+--..+
T Consensus 27 L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~l 90 (309)
T PF09728_consen 27 LCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKL 90 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444455566667777777777777777777777777777777654433
No 123
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=75.25 E-value=26 Score=32.58 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=22.6
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 111 RASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLT 145 (184)
Q Consensus 111 Ra~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~lt 145 (184)
-.+-.+-.+..++..+++.|.+.|..++.++..+.
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~ 64 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAK 64 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344455566667777777777777777776643
No 124
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=75.19 E-value=57 Score=28.62 Aligned_cols=85 Identities=18% Similarity=0.242 Sum_probs=60.5
Q ss_pred HHhHHHHHHhhhhhhhhhhcchhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 030034 93 EAHTRELFDRGLKLEVELRASEPVRAEVVQL---RAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIR 169 (184)
Q Consensus 93 e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~---r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lr 169 (184)
.....-|.-|+..|..-||..+. ++.-- ---|.-|...|..|.+.++.+.++++++......--.+=.|.+++=
T Consensus 139 ~~~~~~L~~kceam~lKLr~~~~---~iL~~TYTpe~v~Al~~Ir~~L~~~~~~~e~~~~~a~~~L~~Ye~lg~~F~~iv 215 (238)
T PF14735_consen 139 KIKAEYLEAKCEAMILKLRVLEL---EILSDTYTPETVPALRKIRDHLEEAIEELEQELQKARQRLESYEGLGPEFEEIV 215 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHccCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHhHHHHH
Confidence 34555666777777776665431 11110 1234556778889999999999999999888888888888888888
Q ss_pred HHHHHhhhhhc
Q 030034 170 SELVEARFEIR 180 (184)
Q Consensus 170 qElqr~Raa~E 180 (184)
+|+.+.+..||
T Consensus 216 reY~~l~~~ie 226 (238)
T PF14735_consen 216 REYTDLQQEIE 226 (238)
T ss_pred HHHHHHHHHHH
Confidence 88888887775
No 125
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=75.08 E-value=51 Score=32.09 Aligned_cols=81 Identities=15% Similarity=0.197 Sum_probs=40.4
Q ss_pred HHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHH
Q 030034 96 TRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ-LIAMRADIDGIRSELVE 174 (184)
Q Consensus 96 ~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qq-ip~l~aEid~lrqElqr 174 (184)
...+.++...+|.++.. +..++..+..++..+.....++..+++.+.+++...-++.++ .-.+.++++.++.++..
T Consensus 204 ~~~~~~~~~~le~el~~---l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e 280 (650)
T TIGR03185 204 PSSILSEIEALEAELKE---QSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKA 280 (650)
T ss_pred chHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555543 333444444444444444444455555555544444433322 34566666666666665
Q ss_pred hhhhh
Q 030034 175 ARFEI 179 (184)
Q Consensus 175 ~Raa~ 179 (184)
.+..+
T Consensus 281 ~~~~l 285 (650)
T TIGR03185 281 NRAQL 285 (650)
T ss_pred HHHHH
Confidence 55443
No 126
>smart00338 BRLZ basic region leucin zipper.
Probab=74.83 E-value=16 Score=25.02 Aligned_cols=40 Identities=25% Similarity=0.532 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030034 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE 154 (184)
Q Consensus 115 ~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d 154 (184)
-=+..+..+..+++.|...-.+|..+|..|..++..+...
T Consensus 23 rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 23 RKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666666666666666666666666555443
No 127
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=74.59 E-value=1.6e+02 Score=33.42 Aligned_cols=114 Identities=21% Similarity=0.228 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHH
Q 030034 39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRA 118 (184)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~ 118 (184)
||.=...-..|...+..|.++..+..-.|..-+-.-..=|-.......++..|.|...+++-....++=.=-++.+.+..
T Consensus 1405 Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e 1484 (1930)
T KOG0161|consen 1405 LEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLE 1484 (1930)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44433444678888899999998888888877777777777777777777777777666665554444333444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (184)
Q Consensus 119 El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~ 152 (184)
.+.+++.+..+|...-.+|+.++..+.+-++-+.
T Consensus 1485 ~~e~l~renk~l~~ei~dl~~~~~e~~k~v~ele 1518 (1930)
T KOG0161|consen 1485 QLEELRRENKNLSQEIEDLEEQKDEGGKRVHELE 1518 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666665555555555555554443333
No 128
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=74.29 E-value=33 Score=25.41 Aligned_cols=31 Identities=29% Similarity=0.546 Sum_probs=16.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKG 143 (184)
Q Consensus 113 ~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ 143 (184)
.+.+++|+..+..++..|...-.++..+++.
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555554444443
No 129
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=74.01 E-value=52 Score=27.56 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=11.6
Q ss_pred hHHHHHHHHhhHHHHHHHhhhhhhh
Q 030034 64 NTHLQRELTASKDEIHRLGQIIPKL 88 (184)
Q Consensus 64 hvaLrqeL~aaq~El~~l~~~i~~i 88 (184)
+..++..+...+.++..+..-|..+
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~i~~l 88 (188)
T PF03962_consen 64 KQKRQNKLEKLQKEIEELEKKIEEL 88 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555444444444433
No 130
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=73.38 E-value=79 Score=30.55 Aligned_cols=67 Identities=21% Similarity=0.197 Sum_probs=45.3
Q ss_pred HHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 030034 96 TRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADI 165 (184)
Q Consensus 96 ~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEi 165 (184)
.+.+.-|..+.|++|+ -++.|..|++.|.=...+...-||.+++.+..+=.+...+...+-.-++|+
T Consensus 43 ~~ai~a~~~~~E~~l~---~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~~q~~e~ 109 (459)
T KOG0288|consen 43 SRAIKAKLQEKELELN---RLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELREQKAEF 109 (459)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3456666667777766 577788888888777777778888887777766555555555555555554
No 131
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=73.34 E-value=7.7 Score=27.23 Aligned_cols=40 Identities=23% Similarity=0.419 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030034 118 AEVVQLRAEVQKLN-SSRQELTTQIKGLTKDVNRLEAENKQ 157 (184)
Q Consensus 118 ~El~Q~r~e~q~L~-~~RQELt~qvq~ltqeL~r~~~d~qq 157 (184)
.-|.|.-.|++.+. +.|..+.++|.....+|.+++.+.++
T Consensus 39 ~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~~ 79 (79)
T PF05008_consen 39 ELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELKK 79 (79)
T ss_dssp HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444444444443 77888888888888888888776653
No 132
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=72.99 E-value=90 Score=29.88 Aligned_cols=36 Identities=14% Similarity=0.292 Sum_probs=14.4
Q ss_pred HHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhh
Q 030034 51 HRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIP 86 (184)
Q Consensus 51 qrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~ 86 (184)
+.|-.+=..+=.++-.+.-+|..++.++..++.-|.
T Consensus 62 ~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~ 97 (420)
T COG4942 62 AKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIA 97 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence 333333333333444444444444444444443333
No 133
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=72.97 E-value=96 Score=30.22 Aligned_cols=140 Identities=18% Similarity=0.249 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhh-------hhhhHHhHHHHHHh---hhhhh
Q 030034 38 TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKL-------RADKEAHTRELFDR---GLKLE 107 (184)
Q Consensus 38 ~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i-------~ae~e~q~Rel~ek---~~KmE 107 (184)
-++.|+..-...++.|..|----.+-|-.||||-.+.++=.++|-....+. -+|.+-.=|+++=| -+-+|
T Consensus 219 di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle 298 (502)
T KOG0982|consen 219 DIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLE 298 (502)
T ss_pred hHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888898887766666778999999999888555554333221 12333333444322 22222
Q ss_pred -----hhhhc----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------Hh-----hhhHHHHHHHHHH
Q 030034 108 -----VELRA----SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE------AE-----NKQLIAMRADIDG 167 (184)
Q Consensus 108 -----aelRa----~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~------~d-----~qqip~l~aEid~ 167 (184)
+-++. +..+|..+--+++-+.||...+|-++.++..++-.|.-.+ .| -+-=|+...=|+.
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELiee 378 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEE 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 22222 3356666667777777777777777777766653322111 11 1112445555788
Q ss_pred HHHHHHHhhh
Q 030034 168 IRSELVEARF 177 (184)
Q Consensus 168 lrqElqr~Ra 177 (184)
|+.|++|+|-
T Consensus 379 lrkelehlr~ 388 (502)
T KOG0982|consen 379 LRKELEHLRR 388 (502)
T ss_pred HHHHHHHHHH
Confidence 9999999884
No 134
>PRK11519 tyrosine kinase; Provisional
Probab=71.09 E-value=96 Score=30.68 Aligned_cols=13 Identities=8% Similarity=0.445 Sum_probs=5.3
Q ss_pred HHHHHHhhHHHHH
Q 030034 67 LQRELTASKDEIH 79 (184)
Q Consensus 67 LrqeL~aaq~El~ 79 (184)
|+++|..++..|+
T Consensus 279 l~~~L~~aE~~l~ 291 (719)
T PRK11519 279 VRSRLDVAENKLN 291 (719)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444443333
No 135
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=71.00 E-value=15 Score=31.36 Aligned_cols=36 Identities=17% Similarity=0.155 Sum_probs=21.5
Q ss_pred CCCCCcccCCCCCCCCChhhhHHHHHHHHHHHHHHHHhh
Q 030034 19 DGPRPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIISEN 57 (184)
Q Consensus 19 ~~p~p~~~~g~~~~~p~p~~LEe~La~Q~~EiqrLl~dN 57 (184)
...||.+ .-|.| +++.--|..+.....+++.-+.+=
T Consensus 33 ~~lfP~~-~~P~~--~~~t~~E~~~v~~~~~lr~~~~~s 68 (233)
T PF11705_consen 33 PPLFPPL-NLPVP--LPLTEEERYLVALKRELRERMRDS 68 (233)
T ss_pred CCCCCCC-CCCCC--CCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3456666 32333 334445888888888887766543
No 136
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=70.42 E-value=34 Score=31.91 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=24.7
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 109 ELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLT 145 (184)
Q Consensus 109 elRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~lt 145 (184)
++-.+-.+-.+..++..+++.|.+.|.+++.++..+.
T Consensus 26 ~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~ 62 (425)
T PRK05431 26 DVDELLELDEERRELQTELEELQAERNALSKEIGQAK 62 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445556666777777778888888877776643
No 137
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=70.26 E-value=34 Score=29.57 Aligned_cols=58 Identities=17% Similarity=0.270 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Q 030034 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEAR 176 (184)
Q Consensus 118 ~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~R 176 (184)
.|++++-+++++|..--|.|....-.+..|+.-+.+- -.+|.|..+|..|+.|.-.-|
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~-Lt~eemQe~i~~L~kev~~~~ 136 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSA-LTTEEMQEEIQELKKEVAGYR 136 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHH
Confidence 5777888888887777777777777777676555543 356777777777777654433
No 138
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=68.92 E-value=76 Score=27.40 Aligned_cols=84 Identities=24% Similarity=0.300 Sum_probs=48.3
Q ss_pred HHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 68 QRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEP----VRAEVVQLRAEVQKLNSSRQELTTQIKG 143 (184)
Q Consensus 68 rqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~----~k~El~Q~r~e~q~L~~~RQELt~qvq~ 143 (184)
+|-..-|.-||+++.-...+..+|+-+... =++...|.+||.-.-. |-..-.+++.|++.|.+.|+..-+|+..
T Consensus 95 ~Qt~~LA~~eirR~~LeAQka~~eR~ia~~--~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~ 172 (192)
T PF11180_consen 95 QQTARLADVEIRRAQLEAQKAQLERLIAES--EARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQ 172 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666665555555554443322 2444555555543332 3334467777888888888887777777
Q ss_pred HHHHHHHHHH
Q 030034 144 LTKDVNRLEA 153 (184)
Q Consensus 144 ltqeL~r~~~ 153 (184)
|...+..++.
T Consensus 173 lQ~qv~~Lq~ 182 (192)
T PF11180_consen 173 LQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHH
Confidence 7666655554
No 139
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=68.82 E-value=82 Score=29.30 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhh-------------hhhhHHhHHH-----------HHHh
Q 030034 47 RREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKL-------------RADKEAHTRE-----------LFDR 102 (184)
Q Consensus 47 ~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i-------------~ae~e~q~Re-----------l~ek 102 (184)
.+.|..--.+|+.|-.+..+|++.++..+.++.-+...++.. +.|.|.|.|- |--|
T Consensus 89 aa~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfReTeAq~ese~~a~aseNaarneeelqwrrdeanfic~~EgLkak 168 (389)
T KOG4687|consen 89 AADIEETKEENLKLRTDREALLDQKADLHGDCELFRETEAQFESEKMAGASENAARNEEELQWRRDEANFICAHEGLKAK 168 (389)
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcccccccccchHHHHhhHHHHHHHHHHHHHHHH
Confidence 345666667899999999999999999888888887777654 4566666652 3334
Q ss_pred hhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 030034 103 GLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSE 171 (184)
Q Consensus 103 ~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqE 171 (184)
.+-|+-||+|+=..|. .|...|.++.-++..|+.||--+-.-.+.-|.+ .+||++--|
T Consensus 169 ~a~LafDLkamideKE----------ELimERDa~kcKa~RLnhELfvaLnadkrhpr~-~DiDgll~E 226 (389)
T KOG4687|consen 169 CAGLAFDLKAMIDEKE----------ELIMERDAMKCKAARLNHELFVALNADKRHPRA-EDIDGLLAE 226 (389)
T ss_pred hhhhhhHHHHHhchHH----------HHHHHHHHHHHHHHHhhhHHHHHHcCCCCCchh-hhhHHHHHh
Confidence 4455555555444443 456677777888888888886554333333322 345555443
No 140
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=68.65 E-value=56 Score=25.77 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHH
Q 030034 43 IEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHR 80 (184)
Q Consensus 43 La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~ 80 (184)
|-.|-+.|+|||.-+.-=++-.+.+-++|.+-+.++..
T Consensus 2 lK~riRdieRLL~r~~Lp~~vR~~~Er~L~~L~~~l~~ 39 (114)
T PF10153_consen 2 LKKRIRDIERLLKRKDLPADVRVEKERELEALKRELEE 39 (114)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999988844477889999999999888765
No 141
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=68.47 E-value=47 Score=24.81 Aligned_cols=70 Identities=17% Similarity=0.283 Sum_probs=40.5
Q ss_pred HHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 78 IHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEP----VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDV 148 (184)
Q Consensus 78 l~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~----~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL 148 (184)
+.+|...|..+..-=+..+- -.++...+|+++..+.. |-.||.++.+.+.+|.....|++..+......+
T Consensus 10 l~rL~~aid~LE~~v~~r~~-~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~I 83 (89)
T PF13747_consen 10 LTRLEAAIDRLEKAVDRRLE-RDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETI 83 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555443332222 33333445555544333 456777788888888888888887777666544
No 142
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=68.25 E-value=1.6e+02 Score=30.99 Aligned_cols=72 Identities=22% Similarity=0.296 Sum_probs=41.9
Q ss_pred hhhhhhhhcchhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 030034 104 LKLEVELRASEPVRAEVVQLRAEVQKLNSS----RQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA 175 (184)
Q Consensus 104 ~KmEaelRa~e~~k~El~Q~r~e~q~L~~~----RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~ 175 (184)
.|.|......+.+|.|+.-+-.++++|... .|.=..+++.+...|..--...--+-.=..|++.+++|.++-
T Consensus 487 ~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e~~~~~~e~e~s 562 (980)
T KOG0980|consen 487 TKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREEEREALRLEAERS 562 (980)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 367777888888888888888888877554 444445555444443322222222222223456677777664
No 143
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=68.22 E-value=1.2e+02 Score=29.51 Aligned_cols=50 Identities=28% Similarity=0.333 Sum_probs=37.5
Q ss_pred HHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 100 FDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (184)
Q Consensus 100 ~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~ 152 (184)
-+|.+..=+=.++.|+-+.=|.|-.-|-|.|++.-|||.+.+. .|+.+++
T Consensus 438 SQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLa---aEItrLR 487 (593)
T KOG4807|consen 438 SQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLA---AEITRLR 487 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHH---HHHHHHH
Confidence 3455555555678888889999999999999999999987653 3444443
No 144
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=67.79 E-value=29 Score=23.03 Aligned_cols=10 Identities=50% Similarity=0.770 Sum_probs=6.0
Q ss_pred HHHHHHHHHH
Q 030034 165 IDGIRSELVE 174 (184)
Q Consensus 165 id~lrqElqr 174 (184)
||++++||.+
T Consensus 28 IeA~~~eL~r 37 (40)
T PF08776_consen 28 IEAIRQELSR 37 (40)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 4566666655
No 145
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=67.74 E-value=84 Score=31.69 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhc
Q 030034 155 NKQLIAMRADIDGIRSELVEARFEIR 180 (184)
Q Consensus 155 ~qqip~l~aEid~lrqElqr~Raa~E 180 (184)
...+-++.-+|+.|+.+|+.....+|
T Consensus 473 ~rei~~~~~~I~~L~~~L~e~~~~ve 498 (652)
T COG2433 473 DREIRARDRRIERLEKELEEKKKRVE 498 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777766655543
No 146
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=67.21 E-value=58 Score=25.39 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030034 117 RAEVVQLRAEVQKLNSSRQE 136 (184)
Q Consensus 117 k~El~Q~r~e~q~L~~~RQE 136 (184)
-.||+.=-.+++.|...|.+
T Consensus 48 E~El~~Ha~~~~~L~~lr~e 67 (132)
T PF07926_consen 48 ERELVKHAEDIKELQQLREE 67 (132)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 34444444445555555544
No 147
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=67.14 E-value=18 Score=33.76 Aligned_cols=27 Identities=30% Similarity=0.570 Sum_probs=24.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 030034 153 AENKQLIAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 153 ~d~qqip~l~aEid~lrqElqr~Raa~ 179 (184)
-++-|||.|+|+|++|++|+.+-+.+|
T Consensus 248 ~~nPqi~~LkarieSlrkql~qe~q~i 274 (372)
T COG3524 248 PENPQIPGLKARIESLRKQLLQEKQAI 274 (372)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999888765
No 148
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=67.04 E-value=60 Score=25.49 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=18.9
Q ss_pred HHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHH
Q 030034 49 EMHRIISENRHAIDDNTHLQRELTASKDEIHRL 81 (184)
Q Consensus 49 EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l 81 (184)
.+.++-.||.+|-..+..|+..++.++.|+...
T Consensus 60 ~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~ 92 (151)
T PF11559_consen 60 KLRRLRSDIERLQNDVERLKEQLEELERELASA 92 (151)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666666555555433
No 149
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=66.64 E-value=47 Score=27.13 Aligned_cols=36 Identities=25% Similarity=0.489 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 030034 134 RQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSEL 172 (184)
Q Consensus 134 RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqEl 172 (184)
-..+..+++.+.+||.+...|. -+|+...+++..|+
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~---~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEI---EALKKQSEGLQKEY 191 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhc
Confidence 3455666777777777655443 36777777776664
No 150
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=66.27 E-value=47 Score=23.96 Aligned_cols=54 Identities=33% Similarity=0.506 Sum_probs=30.8
Q ss_pred hhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 87 KLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR 150 (184)
Q Consensus 87 ~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r 150 (184)
+.=+|+|.+|-.|++-+-+|... | .+.+.-|++|.+.=+++..++..+...+..
T Consensus 5 ~~l~EKDe~Ia~L~eEGekLSk~---------e-l~~~~~IKKLr~~~~e~e~~~~~l~~~~~~ 58 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKLSKK---------E-LKLNNTIKKLRAKIKELEKQIKELKKKLEE 58 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHH---------H-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34468999999999888877632 2 233344445544444444444444444333
No 151
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=66.20 E-value=1e+02 Score=27.79 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 125 AEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (184)
Q Consensus 125 ~e~q~L~~~RQELt~qvq~ltqeL~r~~ 152 (184)
.+...+...++.|..+++.....|.+++
T Consensus 106 ~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 106 LELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555555554443
No 152
>PRK07248 hypothetical protein; Provisional
Probab=65.65 E-value=49 Score=23.93 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=44.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 030034 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD--------------VNRLEAENKQLIAMRADIDGIRSELVEA 175 (184)
Q Consensus 113 ~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqe--------------L~r~~~d~qqip~l~aEid~lrqElqr~ 175 (184)
.+.+|+++.++-.++-+|.+.|-.++.+|..+.++ +.+..+.+.. |.....+..+=+++...
T Consensus 3 L~~lR~~ID~iD~~i~~Ll~~R~~l~~~I~~~K~~~~~~v~d~~RE~~vl~~~~~~~~~-~~~~~~i~~if~~I~~~ 78 (87)
T PRK07248 3 LEEIRQEIDQIDDQLVALLEKRMALVEQVVAYKKATGKPVLDTKREQVILDKVSSLVEN-KAYQETIVATFKDIMKR 78 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHccc-CCCHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999888876 3344444432 33344555655555443
No 153
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=65.11 E-value=1.2e+02 Score=29.35 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=19.8
Q ss_pred hhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhh
Q 030034 58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRAD 91 (184)
Q Consensus 58 qRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae 91 (184)
+.+.=+|+.+-.++...+..+......|+.+.-+
T Consensus 245 ~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~ 278 (569)
T PRK04778 245 EGYHLDHLDIEKEIQDLKEQIDENLALLEELDLD 278 (569)
T ss_pred cCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChH
Confidence 3444456666666666666666655555555443
No 154
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=64.95 E-value=33 Score=26.04 Aligned_cols=58 Identities=26% Similarity=0.338 Sum_probs=48.6
Q ss_pred hhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 86 PKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGL 144 (184)
Q Consensus 86 ~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~l 144 (184)
..+-.+=-..+.++...+..+|+.|+. +.-+.++...=.++|.....|=+||+++|-+
T Consensus 39 ~~~~~~iT~~f~~~S~ei~~ie~~L~~-~~~~~~la~~i~~lQ~~Ek~KL~lT~~lQ~l 96 (97)
T PF14966_consen 39 RQLCHEITQEFSAISKEILAIEAELRD-EHERPDLAELIRELQEQEKEKLELTAKLQVL 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445566788888889999999997 7778889999999999999999999999875
No 155
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=64.75 E-value=24 Score=23.50 Aligned_cols=35 Identities=20% Similarity=0.427 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDV 148 (184)
Q Consensus 114 e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL 148 (184)
+.+|+.-..+.++-..|....+.|.++|+.++.-|
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666666666666666666666666666544
No 156
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=64.47 E-value=1.2e+02 Score=28.03 Aligned_cols=60 Identities=20% Similarity=0.297 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 030034 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA 175 (184)
Q Consensus 116 ~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~ 175 (184)
++..+..+.+++..|.+.-..|..+++.+.+++.+....-.++-.|.-|.+..+.-|...
T Consensus 315 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l 374 (498)
T TIGR03007 315 LQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQL 374 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777777777888888888888877777777777777777766555443
No 157
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=64.45 E-value=59 Score=25.81 Aligned_cols=44 Identities=25% Similarity=0.340 Sum_probs=35.9
Q ss_pred ChhhhHHHHHHHHHHHHHHHHh--hhhhHHhhHHHHHHHHhhHHHH
Q 030034 35 HPMTLEEEIEIQRREMHRIISE--NRHAIDDNTHLQRELTASKDEI 78 (184)
Q Consensus 35 ~p~~LEe~La~Q~~EiqrLl~d--NqRLAathvaLrqeL~aaq~El 78 (184)
..-.|=++|...+..|..+=.. |..++.++-.|+.+|.++..=+
T Consensus 68 tvLALLDElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~~ 113 (139)
T PF13935_consen 68 TVLALLDELERAQQRIAELEQECENEDIALDVQKLRVELEAAEKRI 113 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667788888888888855 9999999999999999998666
No 158
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=64.40 E-value=82 Score=26.09 Aligned_cols=105 Identities=23% Similarity=0.333 Sum_probs=70.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHh-hhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchh
Q 030034 37 MTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLG-QIIPKLRADKEAHTRELFDRGLKLEVELRASEP 115 (184)
Q Consensus 37 ~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~-~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~ 115 (184)
.+|+.-|..-...|..+-..=-+..+...-|.+++..+..++..+. .+...+..-+|--.|..+.+...++..+- .
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~---~ 102 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAE---R 102 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH---H
Confidence 5777777776666666666666677777888888888888888877 55566788888888888888888887763 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGL 144 (184)
Q Consensus 116 ~k~El~Q~r~e~q~L~~~RQELt~qvq~l 144 (184)
++..+.++...+.+|...=.+|..++..+
T Consensus 103 l~~~~~~~~~~~~~l~~~l~~l~~kl~e~ 131 (221)
T PF04012_consen 103 LEQQLDQAEAQVEKLKEQLEELEAKLEEL 131 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 159
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=63.99 E-value=40 Score=34.14 Aligned_cols=65 Identities=28% Similarity=0.387 Sum_probs=36.7
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Q 030034 109 ELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEAR 176 (184)
Q Consensus 109 elRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~R 176 (184)
..|-.++++-||.++.+--|+|++.=.++..++..+.+.+-+.+.|+ -+|+.+|+..+.-+..+|
T Consensus 84 ~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL---~~Lk~~ieqaq~~~~El~ 148 (907)
T KOG2264|consen 84 QKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLEL---SALKGEIEQAQRQLEELR 148 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHH---HHHHhHHHHHHHHHHHHH
Confidence 33444566666666666656666655555566666666655555443 345666665555444444
No 160
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=63.83 E-value=51 Score=23.89 Aligned_cols=42 Identities=26% Similarity=0.319 Sum_probs=22.8
Q ss_pred hhHHHHHH-------HHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHH
Q 030034 38 TLEEEIEI-------QRREMHRIISENRHAIDDNTHLQRELTASKDEIH 79 (184)
Q Consensus 38 ~LEe~La~-------Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~ 79 (184)
-||.|+.. -..|+..|-..|..|...+..|+++....++|-.
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~ 56 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERN 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45666554 4445555555555555555555555555554443
No 161
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=63.82 E-value=61 Score=29.80 Aligned_cols=9 Identities=11% Similarity=0.449 Sum_probs=3.7
Q ss_pred HHHHHHhhh
Q 030034 50 MHRIISENR 58 (184)
Q Consensus 50 iqrLl~dNq 58 (184)
..+|--||+
T Consensus 27 ldkLkKE~q 35 (307)
T PF10481_consen 27 LDKLKKERQ 35 (307)
T ss_pred HHHHHHHHH
Confidence 334444443
No 162
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=63.59 E-value=2.2e+02 Score=30.68 Aligned_cols=47 Identities=21% Similarity=0.316 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhhhh-------hHHhhHHHHHHHHhhHHHHHHHhhhhh
Q 030034 40 EEEIEIQRREMHRIISENRH-------AIDDNTHLQRELTASKDEIHRLGQIIP 86 (184)
Q Consensus 40 Ee~La~Q~~EiqrLl~dNqR-------LAathvaLrqeL~aaq~El~~l~~~i~ 86 (184)
...|..+..+|..|..+=|+ +-..|-.|++|+...+.|.+++...+.
T Consensus 691 r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~ 744 (1200)
T KOG0964|consen 691 RNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLE 744 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Confidence 33444455555555554444 446677788888888877777765444
No 163
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=62.69 E-value=92 Score=26.09 Aligned_cols=113 Identities=15% Similarity=0.190 Sum_probs=67.4
Q ss_pred HHHHHhhHHHHHHHhhhhhhhhhhhH-----HhHHHHHHhhhhhhhhhhcchhHH-----HHHHHHHHHHHHHHHHHHHH
Q 030034 68 QRELTASKDEIHRLGQIIPKLRADKE-----AHTRELFDRGLKLEVELRASEPVR-----AEVVQLRAEVQKLNSSRQEL 137 (184)
Q Consensus 68 rqeL~aaq~El~~l~~~i~~i~ae~e-----~q~Rel~ek~~KmEaelRa~e~~k-----~El~Q~r~e~q~L~~~RQEL 137 (184)
|++|+.+-.|+-.--..++.+-..+. ..+-++.+++..+....-..+.+. .|..-.=.=|+.+-..|..+
T Consensus 34 r~ela~~~~efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~~a~~e~~~l~~~L~ey~r~~~Svk~~~~~R~~~ 113 (216)
T cd07627 34 RKELASATEEFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLERQALQDVLTLGVTLDEYIRSIGSVRAAFAQRQKL 113 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566665555544444443321111 235555555555555533333333 34444445566667777777
Q ss_pred HHHHHHHHHHHHHHHHh-----------hhhHHHHHHHHHHHHHHHHHhhhhhc
Q 030034 138 TTQIKGLTKDVNRLEAE-----------NKQLIAMRADIDGIRSELVEARFEIR 180 (184)
Q Consensus 138 t~qvq~ltqeL~r~~~d-----------~qqip~l~aEid~lrqElqr~Raa~E 180 (184)
-..++.+.++|.+.++. ..+++.+..||+.+....+.++..||
T Consensus 114 ~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e 167 (216)
T cd07627 114 WQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFE 167 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888777632 35677889999888888888877664
No 164
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=62.66 E-value=1e+02 Score=26.64 Aligned_cols=39 Identities=26% Similarity=0.419 Sum_probs=23.5
Q ss_pred HHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhh
Q 030034 51 HRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLR 89 (184)
Q Consensus 51 qrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ 89 (184)
..|=.-|++|++..-.|++.+..+.+.=.+|..-|.+++
T Consensus 11 ~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~ 49 (193)
T PF14662_consen 11 EDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLR 49 (193)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666666666666666666555555555443
No 165
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=62.56 E-value=1.3e+02 Score=27.77 Aligned_cols=69 Identities=16% Similarity=0.160 Sum_probs=30.1
Q ss_pred CCCChhhhHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhh----hhhHHhHHHHHHhhhhhh
Q 030034 32 MHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLR----ADKEAHTRELFDRGLKLE 107 (184)
Q Consensus 32 ~~p~p~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~----ae~e~q~Rel~ek~~KmE 107 (184)
.|+.+.-|-.+++.-..+ |.-|=..--.+|..-...+.|+..|......++ .|.|--+-.|+-|+..+.
T Consensus 18 S~~t~~~l~~~~~sL~qe-------n~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~ 90 (310)
T PF09755_consen 18 SSATREQLRKRIESLQQE-------NRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLK 90 (310)
T ss_pred CCCchHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666554444 333333333333333444444444444333333 333333444555544443
No 166
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=62.49 E-value=54 Score=25.41 Aligned_cols=53 Identities=30% Similarity=0.429 Sum_probs=34.4
Q ss_pred HHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 97 RELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (184)
Q Consensus 97 Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~ 152 (184)
++|+++...||..|. .+-+++..+...+..|...=+.|.-+-+.|..-|....
T Consensus 4 ~~l~~~l~~le~~l~---~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 4 KELFDRLDQLEQQLG---QLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578888888887665 34556666666666666666666666666665555543
No 167
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=62.12 E-value=85 Score=25.50 Aligned_cols=67 Identities=12% Similarity=0.064 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHH---HhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhh
Q 030034 38 TLEEEIEIQRREMHRIISENRHAIDDNTHLQREL---TASKDEIHRLGQIIPKLRADKEAHTRELFDRGL 104 (184)
Q Consensus 38 ~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL---~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~ 104 (184)
.+-..++.+...+...-.+|..+..+..+|.++. ..+|..|+.....+...-+.+|..|++|++-..
T Consensus 23 ~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe 92 (135)
T TIGR03495 23 NARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENE 92 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 3566778888888888889999999998888888 557777888888888888888888887776543
No 168
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=62.08 E-value=82 Score=25.35 Aligned_cols=80 Identities=20% Similarity=0.353 Sum_probs=58.0
Q ss_pred HHHHHhhhhhhhhhhcchhHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 030034 97 RELFDRGLKLEVELRASEPVRAEVVQLRAEV------------QKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRAD 164 (184)
Q Consensus 97 Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~------------q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aE 164 (184)
-..+.-..|||..|.-+.-|+.||..+-.|. |.|..+|.-.-..+.=+++|+.|..+ +|-.+..|
T Consensus 22 ~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI~~Eikr~e~---~i~d~q~e 98 (120)
T KOG3478|consen 22 EKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFISKEIKRLEN---QIRDSQEE 98 (120)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 3456667899999999999999999998874 45666666666777777888777654 45556666
Q ss_pred HHHHHHHHHHhhhhh
Q 030034 165 IDGIRSELVEARFEI 179 (184)
Q Consensus 165 id~lrqElqr~Raa~ 179 (184)
....|..+..+-.+|
T Consensus 99 ~~k~R~~v~k~Q~~~ 113 (120)
T KOG3478|consen 99 FEKQREAVIKLQQAA 113 (120)
T ss_pred HHHHHHHHHHHHHHh
Confidence 666666666555444
No 169
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=61.77 E-value=87 Score=27.19 Aligned_cols=98 Identities=20% Similarity=0.211 Sum_probs=56.2
Q ss_pred hhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhh-cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 63 DNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELR-ASEPVRAEVVQLRAEVQKLNSSRQELTTQI 141 (184)
Q Consensus 63 thvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelR-a~e~~k~El~Q~r~e~q~L~~~RQELt~qv 141 (184)
+--+|.+++.+.++......+.+.+++.-.. .+-.+..+++.... +...++....-+.++..+++..=+.+++.|
T Consensus 69 ~le~Le~el~~l~~~~~~~~~~~~~lq~~~~----~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v 144 (256)
T PF14932_consen 69 DLEALEEELEALQEYKELYEQLRNKLQQLDS----SLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEV 144 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555655554444444444444332222 24444455555432 223344444446667788888888899999
Q ss_pred HHHHHHHHHHHHh-hhhHHHHHHH
Q 030034 142 KGLTKDVNRLEAE-NKQLIAMRAD 164 (184)
Q Consensus 142 q~ltqeL~r~~~d-~qqip~l~aE 164 (184)
..++.++....+. .+..|.+...
T Consensus 145 ~~l~~~~~~~~~~~~~~~~~flsq 168 (256)
T PF14932_consen 145 SKLASELAHAHSGQQQNPPVFLSQ 168 (256)
T ss_pred HHHHHHHHHhcccccCCCCchhhh
Confidence 9999998887764 4556655543
No 170
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=61.59 E-value=1.9e+02 Score=29.38 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=7.1
Q ss_pred HHHHHhhHHHHHHHh
Q 030034 68 QRELTASKDEIHRLG 82 (184)
Q Consensus 68 rqeL~aaq~El~~l~ 82 (184)
++++.....++..+.
T Consensus 500 ~~e~~~l~~~l~~~~ 514 (908)
T COG0419 500 REEIEELEKELRELE 514 (908)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 171
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=61.47 E-value=2.4e+02 Score=30.43 Aligned_cols=132 Identities=22% Similarity=0.302 Sum_probs=71.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhHHh-------hHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhh
Q 030034 37 MTLEEEIEIQRREMHRIISENRHAIDD-------NTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVE 109 (184)
Q Consensus 37 ~~LEe~La~Q~~EiqrLl~dNqRLAat-------hvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEae 109 (184)
+.+|.+|-.-.+|+..=..-|++|-.+ .--|+||..-..+|-+++.+.+..+.+=++.-.|- + -+--.-
T Consensus 180 Adle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~--d--~~yker 255 (1195)
T KOG4643|consen 180 ADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERP--D--TTYKER 255 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcC--C--Cccchh
Confidence 567777777777776666555554332 33334444444444444444444333222211100 0 000011
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 030034 110 LRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELV 173 (184)
Q Consensus 110 lRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElq 173 (184)
+--++-+|+=|.-++-|-+.|....+.|-.|+|.+..-=.. .+=-.+|--+++.++.|+-|.-
T Consensus 256 lmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~-~tleseiiqlkqkl~dm~~erd 318 (1195)
T KOG4643|consen 256 LMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-ATLESEIIQLKQKLDDMRSERD 318 (1195)
T ss_pred hhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-CChHHHHHHHHHHHHHHHHhhh
Confidence 22334588999999999999999999999999988554322 1122344455555555555443
No 172
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=61.47 E-value=2.7 Score=40.60 Aligned_cols=29 Identities=21% Similarity=0.462 Sum_probs=0.0
Q ss_pred hhhhhhhhHHhHHHHHHhhhhhhhhhhcc
Q 030034 85 IPKLRADKEAHTRELFDRGLKLEVELRAS 113 (184)
Q Consensus 85 i~~i~ae~e~q~Rel~ek~~KmEaelRa~ 113 (184)
+...+-|||.+||+++++.+-+|.|||.-
T Consensus 424 Lr~QQ~eKd~qmksII~RL~~vEeELrre 452 (495)
T PF12004_consen 424 LRRQQEEKDSQMKSIISRLMAVEEELRRE 452 (495)
T ss_dssp -----------------------------
T ss_pred HHHHhhhhHHHHHHHHhhhhhhhhhhhhh
Confidence 45778899999999999999999887753
No 173
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=61.04 E-value=77 Score=24.65 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=37.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 030034 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 113 ~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (184)
.+.+-.++.+...-+.++...-.--..+++...++-...... |-.++.+|+.|+.+|..++...
T Consensus 48 ~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~---i~~~k~~ie~lk~~L~~ak~~r 111 (139)
T PF05615_consen 48 YERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQE---IEQAKKEIEELKEELEEAKRVR 111 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666555544444444444443333332 3367777888888888777653
No 174
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=60.79 E-value=61 Score=24.68 Aligned_cols=52 Identities=27% Similarity=0.427 Sum_probs=40.8
Q ss_pred HHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 99 LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRL 151 (184)
Q Consensus 99 l~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~ 151 (184)
.-.|..++|.++... |=+.+++.++.++-++...=+.|.+++++++.-+..+
T Consensus 47 ~~~Rl~~lE~~l~~L-Pt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 47 HDRRLQALETKLEHL-PTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 456677888888765 5588999999999888888888888888887765543
No 175
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=60.56 E-value=1.2e+02 Score=26.71 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhc
Q 030034 160 AMRADIDGIRSELVEARFEIR 180 (184)
Q Consensus 160 ~l~aEid~lrqElqr~Raa~E 180 (184)
...+.+...+.++..++..++
T Consensus 187 ~~~a~~~~~~a~l~~a~~~l~ 207 (346)
T PRK10476 187 ALVAQRAAREAALAIAELHLE 207 (346)
T ss_pred hhHHHHHHHHHHHHHHHHHhh
Confidence 344445555555555554443
No 176
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=60.51 E-value=83 Score=29.69 Aligned_cols=41 Identities=22% Similarity=0.255 Sum_probs=32.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEA 153 (184)
Q Consensus 113 ~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~ 153 (184)
.+.+..++..++..+..|.....+|..+++.+.++|..+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 133 FDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45677777788888888888888888888888888887765
No 177
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=60.44 E-value=58 Score=23.09 Aligned_cols=54 Identities=24% Similarity=0.410 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHhhh
Q 030034 123 LRAEVQKLNSSRQELTTQIKGLTKDVN-RLEAENKQLIAMRADIDGIRSELVEARF 177 (184)
Q Consensus 123 ~r~e~q~L~~~RQELt~qvq~ltqeL~-r~~~d~qqip~l~aEid~lrqElqr~Ra 177 (184)
+-+||+-=.+...||+ +|++-+..+. +++.--++.-.|.++|+.|+.|+-..|+
T Consensus 6 L~~EirakQ~~~eEL~-kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 6 LEAEIRAKQAIQEELT-KVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566666666666665 4665555543 3445556777888999999998877764
No 178
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=60.27 E-value=84 Score=24.86 Aligned_cols=55 Identities=16% Similarity=0.330 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 030034 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA 175 (184)
Q Consensus 118 ~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~ 175 (184)
.++...-.....|...|.+|.+-++.|.++ ..+-+|.+-.|.+.|+.++..+---
T Consensus 23 ~slE~~K~S~~eL~kqkd~L~~~l~~L~~q---~~s~~qr~~eLqaki~ea~~~le~e 77 (107)
T PF09304_consen 23 RSLEDEKTSQGELAKQKDQLRNALQSLQAQ---NASRNQRIAELQAKIDEARRNLEDE 77 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566677777777777777665 3355666777777777666655433
No 179
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=60.24 E-value=2e+02 Score=29.56 Aligned_cols=68 Identities=24% Similarity=0.322 Sum_probs=42.8
Q ss_pred hhhhhhhhhHHhHHHHHHhhh--------hhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030034 84 IIPKLRADKEAHTRELFDRGL--------KLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE 154 (184)
Q Consensus 84 ~i~~i~ae~e~q~Rel~ek~~--------KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d 154 (184)
.+..++-|.|..|.+.+-+.. .||+.| ..+.+.|..+.+|.-.|..+=++-..-|..|+....++-+|
T Consensus 60 qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l---~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~ 135 (769)
T PF05911_consen 60 QLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKL---AELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAE 135 (769)
T ss_pred HHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 445677788888888765531 344433 34566777777777777776666666666666664444443
No 180
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=60.18 E-value=1.4e+02 Score=27.44 Aligned_cols=122 Identities=18% Similarity=0.225 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHHH----HHHHHhhhhhHHhhHHHH-----------HHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHh
Q 030034 38 TLEEEIEIQRREM----HRIISENRHAIDDNTHLQ-----------RELTASKDEIHRLGQIIPKLRADKEAHTRELFDR 102 (184)
Q Consensus 38 ~LEe~La~Q~~Ei----qrLl~dNqRLAathvaLr-----------qeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek 102 (184)
-+|-.|..|-..| +.|.++||||-..-.++| |...+..+|+-.+.++-.. ---+||+|-+.
T Consensus 45 E~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeq----l~kyiReLEQa 120 (333)
T KOG1853|consen 45 EIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQ----LRKYIRELEQA 120 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHh
Confidence 3566666655544 568889999876655554 3334444555444333322 22456666666
Q ss_pred hhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 030034 103 GLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELV 173 (184)
Q Consensus 103 ~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElq 173 (184)
.--||---|+..-.-.++.| +|+-+ ..+..-|..||---..-+-.+--|+.|--+|||||+
T Consensus 121 NDdLErakRati~sleDfeq------rLnqA----IErnAfLESELdEke~llesvqRLkdEardlrqela 181 (333)
T KOG1853|consen 121 NDDLERAKRATIYSLEDFEQ------RLNQA----IERNAFLESELDEKEVLLESVQRLKDEARDLRQELA 181 (333)
T ss_pred ccHHHHhhhhhhhhHHHHHH------HHHHH----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666544444333222221 11110 112333444444444444455556666666666664
No 181
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=60.02 E-value=1.1e+02 Score=26.35 Aligned_cols=106 Identities=24% Similarity=0.321 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHH----------HHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhh
Q 030034 39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKD----------EIHRLGQIIPKLRADKEAHTRELFDRGLKLEV 108 (184)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~----------El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEa 108 (184)
|.+.-+.-++.|...---|.+|+.....|+..+-.+|+ |+..|+..+. .-|-+-+.|+-.+..+|.
T Consensus 20 L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~----~lEE~~~~L~aq~rqlEk 95 (193)
T PF14662_consen 20 LADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAK----SLEEENRSLLAQARQLEK 95 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 55566666777888888899999999999888877764 3334444333 335566777777777777
Q ss_pred hhhcc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 109 ELRAS----EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDV 148 (184)
Q Consensus 109 elRa~----e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL 148 (184)
+-... +.+-.|-..+-++...|...-++|..+-..|...|
T Consensus 96 E~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 96 EQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 76543 33444444444555555444455544444433333
No 182
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=59.73 E-value=65 Score=32.76 Aligned_cols=66 Identities=17% Similarity=0.332 Sum_probs=44.6
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhh
Q 030034 110 LRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFE 178 (184)
Q Consensus 110 lRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa 178 (184)
.|.+..++.=+.-|+-|.-+|.+-||||.+++..+++-.... .+-||.-+.|+..|+-|+..+--+
T Consensus 78 ~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEel---k~~i~~~q~eL~~Lk~~ieqaq~~ 143 (907)
T KOG2264|consen 78 GRILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEEL---KRLIPQKQLELSALKGEIEQAQRQ 143 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHhHHHHHHHHhHHHHHHHH
Confidence 455677777778888899999999999988888776543322 234555566666666666554433
No 183
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=58.37 E-value=96 Score=25.95 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=19.0
Q ss_pred HhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhH
Q 030034 62 DDNTHLQRELTASKDEIHRLGQIIPKLRADKE 93 (184)
Q Consensus 62 athvaLrqeL~aaq~El~~l~~~i~~i~ae~e 93 (184)
..+..|..++...+.++..+...|...+.+++
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~ 100 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEAKKGRE 100 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45555666666666666666666665555544
No 184
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=58.22 E-value=52 Score=31.93 Aligned_cols=94 Identities=23% Similarity=0.345 Sum_probs=52.1
Q ss_pred HHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHH
Q 030034 49 EMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQ 128 (184)
Q Consensus 49 EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q 128 (184)
|+..|=.|=--..+|--.|-=.+...+.+++.+...=.++++|+|. |-.+-..+.-.+ ..+|..+-.++..+.+
T Consensus 46 e~kalGiegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~----L~~r~~~id~~i--~~av~~~~~~~~~~~~ 119 (472)
T TIGR03752 46 ELKALGIEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENER----LQKREQSIDQQI--QQAVQSETQELTKEIE 119 (472)
T ss_pred hhHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhhHHHHH--HHHHHhhhHHHHHHHH
Confidence 3444444444445566566666666666666666666667777662 222222222222 2344444455555667
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030034 129 KLNSSRQELTTQIKGLTKDV 148 (184)
Q Consensus 129 ~L~~~RQELt~qvq~ltqeL 148 (184)
.|...++.|.+.++.|+..|
T Consensus 120 ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 120 QLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777766655
No 185
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=58.03 E-value=1.9e+02 Score=29.35 Aligned_cols=11 Identities=18% Similarity=0.561 Sum_probs=4.0
Q ss_pred HHHHHhhHHHH
Q 030034 68 QRELTASKDEI 78 (184)
Q Consensus 68 rqeL~aaq~El 78 (184)
+.++.....++
T Consensus 524 ~~~~e~~~~~~ 534 (771)
T TIGR01069 524 EKELEQKNEHL 534 (771)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 186
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=57.95 E-value=2.2e+02 Score=28.83 Aligned_cols=72 Identities=17% Similarity=0.290 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhh-------hHHhhHHHHHHHHhhHHHHHHHhhhhhhhhh--hhHHhHHHHHHhhhhhh
Q 030034 37 MTLEEEIEIQRREMHRIISENRH-------AIDDNTHLQRELTASKDEIHRLGQIIPKLRA--DKEAHTRELFDRGLKLE 107 (184)
Q Consensus 37 ~~LEe~La~Q~~EiqrLl~dNqR-------LAathvaLrqeL~aaq~El~~l~~~i~~i~a--e~e~q~Rel~ek~~KmE 107 (184)
..||..|..-..||+..-.-=+- |-.+.-.||.||...++|-..|..-+..+.. ++|.+--..+||-.+.|
T Consensus 421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE 500 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666665555555432211111 2233456777777777777666654444432 23344444444444433
Q ss_pred h
Q 030034 108 V 108 (184)
Q Consensus 108 a 108 (184)
.
T Consensus 501 ~ 501 (697)
T PF09726_consen 501 R 501 (697)
T ss_pred H
Confidence 3
No 187
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=57.74 E-value=69 Score=26.48 Aligned_cols=62 Identities=13% Similarity=0.183 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhcc
Q 030034 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEIRY 181 (184)
Q Consensus 118 ~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 181 (184)
.-+.++..+..+....-.-|.+.|+....-|....+. .-+.+.-+|..+.+=++|||.|+++
T Consensus 102 ~~~~~Lyq~L~~hqe~erRL~~mi~~~e~~l~~~~~~--~~~~lq~ei~a~e~RL~RCr~Ai~~ 163 (173)
T PF07445_consen 102 KPIHQLYQRLAQHQEYERRLLAMIQEREQQLEQAQSF--EQQQLQQEILALEQRLQRCRQAIEK 163 (173)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555556666777777777777766666 5567888999999999999999875
No 188
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=57.73 E-value=2.9e+02 Score=30.20 Aligned_cols=85 Identities=13% Similarity=0.228 Sum_probs=42.2
Q ss_pred HHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 67 LQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTK 146 (184)
Q Consensus 67 LrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltq 146 (184)
++.|+..-+.||--+...+..++.|.+.--.+|=.=.-+++.-++.++.++.=|.....+.++..+.=-.+...++++.+
T Consensus 477 ~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~ 556 (1293)
T KOG0996|consen 477 IREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQ 556 (1293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 33344444444444444444444444444444444444555556666666666666555555555555555555555444
Q ss_pred HHHHH
Q 030034 147 DVNRL 151 (184)
Q Consensus 147 eL~r~ 151 (184)
|+...
T Consensus 557 e~~~~ 561 (1293)
T KOG0996|consen 557 ELKEK 561 (1293)
T ss_pred HHHHH
Confidence 44433
No 189
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=57.71 E-value=1.9e+02 Score=28.11 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHHHHH
Q 030034 115 PVRAEVVQLRAEVQK 129 (184)
Q Consensus 115 ~~k~El~Q~r~e~q~ 129 (184)
|+|.-|...+..|..
T Consensus 144 Pl~e~l~~f~~~v~~ 158 (475)
T PRK10361 144 PLREQLDGFRRQVQD 158 (475)
T ss_pred hHHHHHHHHHHHHHH
Confidence 344444443333333
No 190
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=57.70 E-value=91 Score=26.89 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=33.5
Q ss_pred HHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 76 DEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQI 141 (184)
Q Consensus 76 ~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qv 141 (184)
.-|..-|.-|..++.....++-.|==...|.|-.+. ++-..|.|-.-|++.|+..|.||.++|
T Consensus 143 ekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~---SLe~~LeQK~kEn~ELtkICDeLI~k~ 205 (207)
T PF05010_consen 143 EKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQ---SLEESLEQKTKENEELTKICDELISKM 205 (207)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444555555555555444444444444333 344566666666666666666666655
No 191
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=57.68 E-value=1.4e+02 Score=26.48 Aligned_cols=48 Identities=19% Similarity=0.251 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhh
Q 030034 43 IEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRA 90 (184)
Q Consensus 43 La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~a 90 (184)
+..+..+..++-++=-++-..-+++..++...+.++.++...|.+++.
T Consensus 26 ~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~ 73 (239)
T COG1579 26 IKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRE 73 (239)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444455555666666666666666666666666553
No 192
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=57.43 E-value=27 Score=24.89 Aligned_cols=36 Identities=28% Similarity=0.437 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHH
Q 030034 137 LTTQIKGLTKDVNRLEAENKQ-LIAMRADIDGIRSEL 172 (184)
Q Consensus 137 Lt~qvq~ltqeL~r~~~d~qq-ip~l~aEid~lrqEl 172 (184)
|..+|+++.+-+.=++.+-.+ +-.|.+||+.|+++-
T Consensus 1 l~~qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~ 37 (60)
T PF14916_consen 1 LEQQVQSLEKSILFLQQEHAQTLKGLHAEIERLQKRN 37 (60)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346788888887777766655 778888888888763
No 193
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=57.43 E-value=61 Score=23.96 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhh
Q 030034 38 TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQI 84 (184)
Q Consensus 38 ~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~ 84 (184)
-+|-++..|-.||+.+-.-=--|=.+|..+|+.- ..||.+|+..
T Consensus 29 e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~Y---EeEI~rLr~e 72 (79)
T PF08581_consen 29 EYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQY---EEEIARLRRE 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 4556666666666666555555556666666554 4555555443
No 194
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=57.20 E-value=1.3e+02 Score=26.10 Aligned_cols=86 Identities=28% Similarity=0.397 Sum_probs=51.3
Q ss_pred HHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q 030034 76 DEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQ-------IKGLTKDV 148 (184)
Q Consensus 76 ~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~q-------vq~ltqeL 148 (184)
-||--|.+.+.+.++|-=...-+|+ ++|.-+..+++........-++|... +.....||
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Eiv--------------~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~EL 75 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEIV--------------SLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENEL 75 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHH--------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHH
Confidence 3677788888888887554444443 45555556666655555555555554 44445555
Q ss_pred HHHHHhh----hhHHHHHHHHHHHHHHHHHh
Q 030034 149 NRLEAEN----KQLIAMRADIDGIRSELVEA 175 (184)
Q Consensus 149 ~r~~~d~----qqip~l~aEid~lrqElqr~ 175 (184)
++..++. .++-.+.+|+-.|+.++..+
T Consensus 76 qr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 76 QRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 5555554 34555666666666666554
No 195
>PF15463 ECM11: Extracellular mutant protein 11
Probab=56.83 E-value=91 Score=24.72 Aligned_cols=50 Identities=20% Similarity=0.316 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHH
Q 030034 122 QLRAEVQKLNSSRQELTTQIKGLTKDVNRLE-AENKQLIAMRADIDGIRSE 171 (184)
Q Consensus 122 Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~-~d~qqip~l~aEid~lrqE 171 (184)
|-..=+++|...|+++.-.++.++.++++-. +-..+.-.+...++.|++.
T Consensus 84 qf~~l~~kl~~~R~~~r~~~~~fe~eI~~R~eav~~~~~~l~~kL~~mk~~ 134 (139)
T PF15463_consen 84 QFSELMQKLKEARRKLRKKFAVFEDEINRRAEAVRAQGEQLDRKLEKMKEG 134 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344579999999999999999999998644 4455666666666666653
No 196
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=56.70 E-value=3e+02 Score=30.08 Aligned_cols=99 Identities=17% Similarity=0.201 Sum_probs=45.9
Q ss_pred HHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhh----hcchhHHHHHHHHH
Q 030034 49 EMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVEL----RASEPVRAEVVQLR 124 (184)
Q Consensus 49 EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEael----Ra~e~~k~El~Q~r 124 (184)
|+......+++....+ .-|+......+...+..+.+++.+=+...-.+.+++.++|.+| -.+--++.|++-+.
T Consensus 430 e~e~~pe~~~~~i~~~---~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vae 506 (1293)
T KOG0996|consen 430 ELEKAPEKARIEIQKC---QTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAE 506 (1293)
T ss_pred HHHhCchhhHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555444332 2344444444444444444444444444444555555555544 22333444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 125 AEVQKLNSSRQELTTQIKGLTKDVNR 150 (184)
Q Consensus 125 ~e~q~L~~~RQELt~qvq~ltqeL~r 150 (184)
+|..-|...-..++.+|-.+..-|..
T Consensus 507 sel~~L~~~~~~~~~~~e~lk~~L~~ 532 (1293)
T KOG0996|consen 507 SELDILLSRHETGLKKVEELKGKLLA 532 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45444444444444455555444444
No 197
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=56.41 E-value=1.2e+02 Score=25.56 Aligned_cols=46 Identities=20% Similarity=0.379 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Q 030034 128 QKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEAR 176 (184)
Q Consensus 128 q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~R 176 (184)
-+|....+-+..+.+...+|+.+++++.. ++..++++++.+.+..-
T Consensus 141 ~el~~~~~~~~~~ke~~~~ei~~lks~~~---~l~~~~~~~e~~F~~~~ 186 (190)
T PF05266_consen 141 LELQRQAAKLKEKKEAKDKEISRLKSEAE---ALKEEIENAELEFQSVA 186 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Confidence 33444444455555555566666666543 34556666666655443
No 198
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=56.40 E-value=2.6e+02 Score=29.21 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 030034 125 AEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELV 173 (184)
Q Consensus 125 ~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElq 173 (184)
..+..+.....++...+..+...|........++-.+..+++.+..++.
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (1047)
T PRK10246 829 QELAQLAQQLRENTTRQGEIRQQLKQDADNRQQQQALMQQIAQATQQVE 877 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444444444455555555554443
No 199
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=56.13 E-value=1e+02 Score=30.00 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=19.6
Q ss_pred HHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhH
Q 030034 53 IISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE 93 (184)
Q Consensus 53 Ll~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e 93 (184)
|..+-||..+---+|+-.|..-|+.=.+|+.++..++-|++
T Consensus 330 laee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~eke 370 (502)
T KOG0982|consen 330 LAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKE 370 (502)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33444444444444444455555555555555554444444
No 200
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=56.03 E-value=49 Score=24.64 Aligned_cols=42 Identities=21% Similarity=0.346 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Q 030034 135 QELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEAR 176 (184)
Q Consensus 135 QELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~R 176 (184)
++|..+.+.+.+++..++....++-....|++.+..++..+-
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00890 2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566666666666666666666666666666666666554
No 201
>PF05465 Halo_GVPC: Halobacterial gas vesicle protein C (GVPC) repeat; InterPro: IPR008639 This family consists of Halobacterium gas vesicle protein C sequences which are thought to confer stability to the gas vesicle membranes [,].; GO: 0031412 gas vesicle organization, 0031411 gas vesicle
Probab=55.41 E-value=14 Score=23.06 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhc
Q 030034 158 LIAMRADIDGIRSELVEARFEIR 180 (184)
Q Consensus 158 ip~l~aEid~lrqElqr~Raa~E 180 (184)
|..|.++|+.+|.|+.-.+.+|+
T Consensus 1 V~~l~a~I~~~r~~f~~~~~aF~ 23 (32)
T PF05465_consen 1 VSDLLAAIAEFREEFDDTQDAFE 23 (32)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999988886
No 202
>PRK15396 murein lipoprotein; Provisional
Probab=55.31 E-value=54 Score=24.32 Aligned_cols=13 Identities=46% Similarity=0.659 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 030034 119 EVVQLRAEVQKLN 131 (184)
Q Consensus 119 El~Q~r~e~q~L~ 131 (184)
++.|+.++|+.|.
T Consensus 26 kvd~LssqV~~L~ 38 (78)
T PRK15396 26 KIDQLSSDVQTLN 38 (78)
T ss_pred hHHHHHHHHHHHH
Confidence 3344444444433
No 203
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=54.89 E-value=7.9 Score=29.22 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhH
Q 030034 40 EEEIEIQRREMHRIISENRHAIDDNTHLQRELTASK 75 (184)
Q Consensus 40 Ee~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq 75 (184)
.+=|..-..++..|..+|..|-...-.|..+|...+
T Consensus 24 D~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~ 59 (131)
T PF05103_consen 24 DDFLDELAEELERLQRENAELKEEIEELQAQLEELR 59 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 344444444455555444444444444443333333
No 204
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=54.72 E-value=1.4e+02 Score=25.86 Aligned_cols=52 Identities=21% Similarity=0.426 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhh
Q 030034 124 RAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFE 178 (184)
Q Consensus 124 r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa 178 (184)
..........|..|..++..++.++.++..+.+. --.|...++.++..+|.+
T Consensus 67 ~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~---ke~Ea~~lq~el~~ar~~ 118 (246)
T PF00769_consen 67 EEEAEMQEEEKEQLEQELREAEAEIARLEEESER---KEEEAEELQEELEEARED 118 (246)
T ss_dssp HH------------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555555555555544332 234445555555555543
No 205
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=54.60 E-value=4.1 Score=40.03 Aligned_cols=74 Identities=23% Similarity=0.359 Sum_probs=0.0
Q ss_pred hhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhh---hHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q 030034 57 NRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRAD---KEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKL 130 (184)
Q Consensus 57 NqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae---~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L 130 (184)
|+-++..+..|+..+...++|+.++.....+.+.+ .+.++.+|-.++.-|-++.+....+|+|+.-+|..+.++
T Consensus 234 ~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~ 310 (713)
T PF05622_consen 234 SQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRA 310 (713)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34444455667777777888887777666666533 345666777777777777788888888888777765554
No 206
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=54.55 E-value=1.2e+02 Score=26.19 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=14.9
Q ss_pred hHHHHHHHHhhHHHHHHHhhhhh
Q 030034 64 NTHLQRELTASKDEIHRLGQIIP 86 (184)
Q Consensus 64 hvaLrqeL~aaq~El~~l~~~i~ 86 (184)
-|.|+.||+.....|..+.....
T Consensus 98 evrLkrELa~Le~~l~~~~~~~~ 120 (195)
T PF12761_consen 98 EVRLKRELAELEEKLSKVEQAAE 120 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777666654444
No 207
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=54.11 E-value=1.5e+02 Score=25.79 Aligned_cols=87 Identities=14% Similarity=0.266 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHH
Q 030034 46 QRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRA 125 (184)
Q Consensus 46 Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~ 125 (184)
+..-|..|....+.+=....-|.+.-..+..+.++|.....+-..|++ .|-.++.-+-.
T Consensus 31 ~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~---------------------~Le~e~~e~~~ 89 (246)
T PF00769_consen 31 SEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKE---------------------QLEQELREAEA 89 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Confidence 333444444444444444455555555555555555544444433333 23344444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 126 EVQKLNSSRQELTTQIKGLTKDVNRLEA 153 (184)
Q Consensus 126 e~q~L~~~RQELt~qvq~ltqeL~r~~~ 153 (184)
+|..|....+.-...+..+.++|..++.
T Consensus 90 ~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 90 EIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555444443
No 208
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=53.89 E-value=57 Score=24.74 Aligned_cols=31 Identities=32% Similarity=0.434 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (184)
Q Consensus 119 El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~ 149 (184)
++.|+.++|+.|.+-=..++..|+.+..+..
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~ 55 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIY 55 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666665555544444444444444443
No 209
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=53.51 E-value=1e+02 Score=29.38 Aligned_cols=111 Identities=19% Similarity=0.283 Sum_probs=31.3
Q ss_pred HHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchh--------HHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 68 QRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEP--------VRAEVVQLRAEVQKLNSSRQELTT 139 (184)
Q Consensus 68 rqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~--------~k~El~Q~r~e~q~L~~~RQELt~ 139 (184)
..|+...++||..|.+.-...+.+--.-|-.+.+|+.++=. -+.+. |-..-..+..+.+.|.+-=.+|..
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~--~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD 227 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKS--ASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQD 227 (424)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777777776666666666666666666655433 11111 112222333344444444444444
Q ss_pred HHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHHHhhhhhc
Q 030034 140 QIKGLTKDVN--RLEAENKQLIAMRADIDGIRSELVEARFEIR 180 (184)
Q Consensus 140 qvq~ltqeL~--r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (184)
-|..|.+|+. +.+-..+|+-.+..+|+.+..+|...-..|.
T Consensus 228 ~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~ 270 (424)
T PF03915_consen 228 LVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIK 270 (424)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555543 2334556777777777777777766655443
No 210
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=53.47 E-value=64 Score=26.16 Aligned_cols=47 Identities=23% Similarity=0.400 Sum_probs=22.3
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHhhhh
Q 030034 132 SSRQELTTQI--KGLTKDVNRLEAENKQ----LIAMRADIDGIRSELVEARFE 178 (184)
Q Consensus 132 ~~RQELt~qv--q~ltqeL~r~~~d~qq----ip~l~aEid~lrqElqr~Raa 178 (184)
..|-+|.++| +....++.....=... |-.++.+++.|..|++.+|..
T Consensus 30 ~~R~dL~~KV~~~~~~~~lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~ 82 (126)
T PF07028_consen 30 CYRSDLGSKVSQKKLLEELKNLSKIQESQRSELKELKQELDVLSKELQALRKE 82 (126)
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666 3333333333322222 444555555555555555543
No 211
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=53.26 E-value=1.9e+02 Score=26.69 Aligned_cols=112 Identities=17% Similarity=0.201 Sum_probs=72.9
Q ss_pred hhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHH----HHHH
Q 030034 57 NRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQ----KLNS 132 (184)
Q Consensus 57 NqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q----~L~~ 132 (184)
-+-.-.-|..++|-..-+++|+.-...--..+.+|-|.|+-.+-.+..+++++. ++++.|.. |+..
T Consensus 15 ~~ywk~l~~~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~n----------qrl~~E~e~~Kek~e~ 84 (333)
T KOG1853|consen 15 DQYWKLLHHEYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRN----------QRLTTEQERNKEKQED 84 (333)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 344445688899999999999999988888899998888888888888888653 44444432 3334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhh
Q 030034 133 SRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFE 178 (184)
Q Consensus 133 ~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa 178 (184)
.|-+.-.++-.|..||...++-..|+-.-.-|++.----|-++.-|
T Consensus 85 q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRa 130 (333)
T KOG1853|consen 85 QRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRA 130 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhh
Confidence 4444455555666666666655555555555555444444444333
No 212
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=52.60 E-value=1.5e+02 Score=25.43 Aligned_cols=125 Identities=19% Similarity=0.224 Sum_probs=67.3
Q ss_pred CChhhhHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcc
Q 030034 34 FHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRAS 113 (184)
Q Consensus 34 p~p~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~ 113 (184)
|.|--|+-.+.--..+++.......- -+.-+.....++.-|...+..+... +.....++-++ ..++
T Consensus 17 ~~~~~l~~~~e~~~~~L~~~~~~~~~-------~~~~~~~~e~~l~~L~~d~~~L~~k----~~~~~~~~~~l---~~~t 82 (264)
T PF06008_consen 17 PAPYKLLSSIEDLTNQLRSYRSKLNP-------QKQQLDPLEKELESLEQDVENLQEK----ATKVSRKAQQL---NNNT 82 (264)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccchh-------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH---HHHH
Confidence 66666777777777777776654432 2223333333333333322222211 11122222222 2334
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 030034 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVE 174 (184)
Q Consensus 114 e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr 174 (184)
+.+......+...|+++...=+++..++..+.+ .-.......++.+.+|++.|=+|++.
T Consensus 83 ~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~--~~~~~~~~~l~~~l~ea~~mL~emr~ 141 (264)
T PF06008_consen 83 ERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE--NGDQLPSEDLQRALAEAQRMLEEMRK 141 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--ccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 455555666666666666655566666665555 23334677888888999998888853
No 213
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=52.48 E-value=34 Score=27.78 Aligned_cols=35 Identities=9% Similarity=0.262 Sum_probs=27.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhc
Q 030034 146 KDVNRLEAENKQLIAMRADIDGIRSELVEARFEIR 180 (184)
Q Consensus 146 qeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (184)
.|-+|.---+-++..+.+|++.+.+++...++.|+
T Consensus 63 DeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~ 97 (161)
T PF04420_consen 63 DEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFD 97 (161)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566555667788888899999999888888775
No 214
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.44 E-value=1.4e+02 Score=26.96 Aligned_cols=38 Identities=24% Similarity=0.492 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030034 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE 154 (184)
Q Consensus 117 k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d 154 (184)
..++..+..|++.|...=.++..+++.+..+..+.+++
T Consensus 44 ~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~e 81 (265)
T COG3883 44 QKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAE 81 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444
No 215
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=51.96 E-value=2.7e+02 Score=28.18 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=7.4
Q ss_pred hhhhhhhhhHHhHHH
Q 030034 84 IIPKLRADKEAHTRE 98 (184)
Q Consensus 84 ~i~~i~ae~e~q~Re 98 (184)
++.-++.+++.|+.+
T Consensus 566 rv~~Lk~~~e~Ql~~ 580 (717)
T PF10168_consen 566 RVKLLKQQKEQQLKE 580 (717)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555554443
No 216
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=51.71 E-value=2.8e+02 Score=28.23 Aligned_cols=63 Identities=19% Similarity=0.311 Sum_probs=29.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 030034 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA 175 (184)
Q Consensus 113 ~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~ 175 (184)
.+.....|..+-.++..+...-+........+...+....+..+.++.+...++.+..++..+
T Consensus 286 ~~~~~~~L~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l 348 (908)
T COG0419 286 LEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEEL 348 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334333333333444445555555555555555555555555555544433
No 217
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=51.01 E-value=2.8e+02 Score=28.06 Aligned_cols=61 Identities=20% Similarity=0.305 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hh-hhhHHHHHHHHHHHHHHHHHhh
Q 030034 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE---AE-NKQLIAMRADIDGIRSELVEAR 176 (184)
Q Consensus 116 ~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~---~d-~qqip~l~aEid~lrqElqr~R 176 (184)
.|.-..++-.|+++|...=+..-.++..+.+|++-++ .+ .+-+-+|...|-.|+..-+|+=
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE 607 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLE 607 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4544444445555544444444444444444443111 22 2345566666666666555543
No 218
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=50.54 E-value=1.1e+02 Score=24.05 Aligned_cols=52 Identities=23% Similarity=0.301 Sum_probs=37.6
Q ss_pred HHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 97 RELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRL 151 (184)
Q Consensus 97 Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~ 151 (184)
++|+|+...||..+. .+-+++..+...++.|...=..|.-+-+.|..-|...
T Consensus 4 ~elfd~l~~le~~l~---~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 4 KEIFDALDDLEQNLG---VLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678999999997765 4566777777777777777777777766666666654
No 219
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=50.42 E-value=3.8e+02 Score=29.42 Aligned_cols=10 Identities=10% Similarity=0.431 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 030034 42 EIEIQRREMH 51 (184)
Q Consensus 42 ~La~Q~~Eiq 51 (184)
++..+..|.+
T Consensus 476 ~lk~~~~el~ 485 (1317)
T KOG0612|consen 476 KLKSEESELQ 485 (1317)
T ss_pred HHHHHHHHHH
Confidence 3444444544
No 220
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=50.17 E-value=46 Score=24.99 Aligned_cols=28 Identities=29% Similarity=0.547 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030034 127 VQKLNSSRQELTTQIKGLTKDVNRLEAE 154 (184)
Q Consensus 127 ~q~L~~~RQELt~qvq~ltqeL~r~~~d 154 (184)
+.+|.+.=|+|.++|..|..|..-..++
T Consensus 27 ~dqlss~vq~LnAkv~qLe~dv~a~~~~ 54 (78)
T COG4238 27 IDQLSSDVQTLNAKVDQLENDVNAMRSD 54 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555554444433
No 221
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=50.12 E-value=68 Score=28.27 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 030034 161 MRADIDGIRSELVEARFE 178 (184)
Q Consensus 161 l~aEid~lrqElqr~Raa 178 (184)
|+.+++.|++|+..+|..
T Consensus 234 lr~~v~~l~~el~~~~~~ 251 (269)
T KOG3119|consen 234 LRTQVEQLKKELATLRRL 251 (269)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455555554443
No 222
>PLN02678 seryl-tRNA synthetase
Probab=50.11 E-value=1.4e+02 Score=28.41 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 118 AEVVQLRAEVQKLNSSRQELTTQIKG 143 (184)
Q Consensus 118 ~El~Q~r~e~q~L~~~RQELt~qvq~ 143 (184)
.+..++..++..|.+.|..++.++..
T Consensus 40 ~~~r~l~~~~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 40 KEWRQRQFELDSLRKEFNKLNKEVAK 65 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666666666654
No 223
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=50.05 E-value=1.3e+02 Score=23.94 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 030034 134 RQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGI 168 (184)
Q Consensus 134 RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~l 168 (184)
-.||..=++.+.+.|.-.++..+||-.|..-|+..
T Consensus 121 d~el~~l~~ql~~hl~s~~~n~~~l~~~~~~ie~~ 155 (160)
T PF13094_consen 121 DEELLPLLKQLNKHLESMQNNLQQLKGLLEAIERS 155 (160)
T ss_pred hHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 34666666777777778888777755555554443
No 224
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=50.03 E-value=2.1e+02 Score=28.54 Aligned_cols=73 Identities=22% Similarity=0.251 Sum_probs=38.4
Q ss_pred HHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHH
Q 030034 48 REMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLR 124 (184)
Q Consensus 48 ~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r 124 (184)
.||+.+..+|-|+-.....|=-+|+.+|+++..+++--. |.+..+-...|.=..|++|++-.+-=-+|..+--
T Consensus 219 eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Eke----el~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~ 291 (596)
T KOG4360|consen 219 EELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKE----ELDEHLQAYKDAQRQLTAELEELEDKYAECMQML 291 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666666666666666666665555543322 3444444445555555555555555444444433
No 225
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=50.03 E-value=3.8e+02 Score=29.38 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (184)
Q Consensus 115 ~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~ 149 (184)
.++....++.+++-+|...=+....+-..++.||.
T Consensus 746 ~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLs 780 (1317)
T KOG0612|consen 746 ELRRSKDQLITEVLKLQSMLEQEISKRLSLQRELK 780 (1317)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhh
Confidence 45556666677777776666666666566666666
No 226
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=49.91 E-value=2.9e+02 Score=27.94 Aligned_cols=118 Identities=12% Similarity=0.246 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHH
Q 030034 42 EIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVV 121 (184)
Q Consensus 42 ~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~ 121 (184)
=+..=..+|+.|+.+|=....+|+ ..+|..+- ......++.+-+..+-..++.+..|-. ++..++..|.
T Consensus 188 ~l~~~~~qi~~l~~~ny~~~~~~v--~~~L~~~~------~~lg~~i~~~l~~~~~~~L~~i~~l~~---~~~~~~~~L~ 256 (806)
T PF05478_consen 188 FLNDTPQQIDHLLVQNYSELKDHV--SSDLDNIG------SLLGGDIQDQLGSNVYPALDSILDLAQ---AMQETKELLQ 256 (806)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHH--HHHHHhcc------chhhHHHHHHHhhhhHHHHHHHHHHHH---HHHHHHHHHH
Confidence 344456788888888877777654 34444433 244667888888888888888888765 4456777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------hhhHHHHHHHHHHHHH
Q 030034 122 QLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE----------------------NKQLIAMRADIDGIRS 170 (184)
Q Consensus 122 Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d----------------------~qqip~l~aEid~lrq 170 (184)
++.....+|...-++|..-+.++..+|.....+ ..|+|.+...++++..
T Consensus 257 ~v~~~~~~L~~~~~qL~~~L~~vK~~L~~~l~~~C~~~~C~~i~~~~~~l~l~~~~~qLP~v~~~l~~l~~ 327 (806)
T PF05478_consen 257 NVNSSLKDLQEYQSQLRDGLRGVKRDLNNTLQDLCTNRECNSILSSLDILQLDADFSQLPNVTSQLNNLEE 327 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhHHHHHhccccccCCCcccCCChHHHHHHHHH
Confidence 888888888888888888887777777766655 3468888888887774
No 227
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=49.74 E-value=82 Score=26.68 Aligned_cols=72 Identities=22% Similarity=0.242 Sum_probs=33.4
Q ss_pred HHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHH
Q 030034 53 IISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQ 128 (184)
Q Consensus 53 Ll~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q 128 (184)
++.+...--.+|. .+|||..+- .+|.+.+...+.|=+.+|.+|-.++.+||.=.+....+|+....+..|..
T Consensus 90 ~iv~~tsancs~Q-VqqeL~~tf---~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~ 161 (171)
T PF04799_consen 90 LIVSFTSANCSHQ-VQQELSSTF---ARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELE 161 (171)
T ss_dssp ---------------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchHHH-HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443333432 567776664 46666777777777777777777777777555555555555554444443
No 228
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=49.69 E-value=3.6e+02 Score=29.01 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=32.8
Q ss_pred HHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhH
Q 030034 49 EMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE 93 (184)
Q Consensus 49 EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e 93 (184)
++-+|=-.|.||-++-|-||.=.+..+++.+++.--+...++|.+
T Consensus 369 qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~ 413 (1243)
T KOG0971|consen 369 QFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELE 413 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHH
Confidence 455677889999999999987777777777766655555555443
No 229
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=49.67 E-value=2.7e+02 Score=27.58 Aligned_cols=51 Identities=20% Similarity=0.241 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhh
Q 030034 37 MTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPK 87 (184)
Q Consensus 37 ~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~ 87 (184)
.-.+++...+..|++.|=..=+.|......+..++..-+.++..+...+..
T Consensus 317 ~~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~ 367 (594)
T PF05667_consen 317 ETEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEE 367 (594)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777666555555555555555555555555444444433
No 230
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=49.18 E-value=5.6 Score=39.09 Aligned_cols=82 Identities=20% Similarity=0.353 Sum_probs=0.0
Q ss_pred HhhHHHHHHHhhhhhhhhhhhHHhHHHH-HHhhhhhhhhhhc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 72 TASKDEIHRLGQIIPKLRADKEAHTREL-FDRGLKLEVELRA-SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (184)
Q Consensus 72 ~aaq~El~~l~~~i~~i~ae~e~q~Rel-~ek~~KmEaelRa-~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~ 149 (184)
..++.|+.....-...++..-|...+.| -++. .+..+.+. .-.++.++.+++..+..+...-+.|..+++.+.++|.
T Consensus 124 ~~le~el~~~~e~~~~~k~~le~~~~~L~~E~~-~~~~e~~~~~~~l~~~~~~l~~~~~~~e~~~~~l~~e~~~l~~~le 202 (722)
T PF05557_consen 124 EELEEELEEAEEELEQLKRKLEEEKRRLQREKE-QLLEEAREEISSLKNELSELERQAENAESQIQSLESELEELKEQLE 202 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444445555555 2221 12222221 1135555555554444444444445555555554444
Q ss_pred HHHHh
Q 030034 150 RLEAE 154 (184)
Q Consensus 150 r~~~d 154 (184)
..+..
T Consensus 203 ~~~~~ 207 (722)
T PF05557_consen 203 ELQSE 207 (722)
T ss_dssp -----
T ss_pred HHHHH
Confidence 44443
No 231
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=48.80 E-value=1.2e+02 Score=25.61 Aligned_cols=46 Identities=24% Similarity=0.395 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHhhhhHHHHH
Q 030034 114 EPVRAEVVQLRAEVQKLNSSRQELTTQ---------------IKGLTKDVNRLEAENKQLIAMR 162 (184)
Q Consensus 114 e~~k~El~Q~r~e~q~L~~~RQELt~q---------------vq~ltqeL~r~~~d~qqip~l~ 162 (184)
+.+|.||.++-.||+.| ||-|.++ +..|+++|.+-.-|+|..-+.+
T Consensus 32 eeLr~EL~KvEeEI~TL---rqvL~aKer~~~eLKrkLGit~l~elkqnlskg~~~vq~S~aY~ 92 (162)
T PF04201_consen 32 EELRSELAKVEEEIQTL---RQVLAAKERHCAELKRKLGITPLSELKQNLSKGWHDVQDSNAYK 92 (162)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHCCchHHHHHHHHHHHhHhhhchhHHH
Confidence 46788888888888744 4444444 3456777777766766665554
No 232
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=48.76 E-value=1.8e+02 Score=25.32 Aligned_cols=51 Identities=16% Similarity=0.350 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 030034 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSE 171 (184)
Q Consensus 118 ~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqE 171 (184)
.||.|++.|+..|.+.=+.+..+-........+... .+--|+.+||.+|.|
T Consensus 53 eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e---ey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 53 EELRQINQDINTLENIIKQAESERNKRQEKIQRLYE---EYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 356666666666655555544444444444444443 233467777777777
No 233
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=48.35 E-value=1.5e+02 Score=24.25 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=25.8
Q ss_pred hhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhH
Q 030034 58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE 93 (184)
Q Consensus 58 qRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e 93 (184)
+.|++.+-.|.+++...+.++..|+..+.++++=.+
T Consensus 9 e~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~ 44 (145)
T COG1730 9 EELAAQLQILQSQIESLQAQIAALNAAISELQTAIE 44 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777777777765443
No 234
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=48.35 E-value=2.5e+02 Score=26.72 Aligned_cols=65 Identities=20% Similarity=0.284 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhh---HHhHHHHHHhhhhhhh
Q 030034 44 EIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADK---EAHTRELFDRGLKLEV 108 (184)
Q Consensus 44 a~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~---e~q~Rel~ek~~KmEa 108 (184)
.....|.+.|-..||.|-..-.-.+.=+..++-+.++|-..+..++.|+ ++++-++..-+..+|.
T Consensus 95 ~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekee 162 (401)
T PF06785_consen 95 EERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEE 162 (401)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHH
Confidence 3345566666666666666555555555666666666666665555554 3444444444444443
No 235
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=48.21 E-value=3.9e+02 Score=28.90 Aligned_cols=139 Identities=17% Similarity=0.290 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHH
Q 030034 41 EEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEV 120 (184)
Q Consensus 41 e~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El 120 (184)
++-..++.|++.=|.+=++-.. ..-|++...-.++|.+.....++..+.+.-.+++.-..-+-=.==.+.++...+|
T Consensus 674 ~~~~~~~~~l~~~L~~~r~~i~---~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~L 750 (1200)
T KOG0964|consen 674 NESRSELKELQESLDEVRNEIE---DIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKEL 750 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHH
Confidence 3445566677666665333222 2345666667777777777777777777666665432222111112333444444
Q ss_pred HHHHHHHHHHHHHH----HHHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHHH---HHHhhhhhccc
Q 030034 121 VQLRAEVQKLNSSR----QELTTQI--KGLTKDVNRLEAENKQLIAMRADIDGIRSE---LVEARFEIRYF 182 (184)
Q Consensus 121 ~Q~r~e~q~L~~~R----QELt~qv--q~ltqeL~r~~~d~qqip~l~aEid~lrqE---lqr~Raa~EyE 182 (184)
.-+.+....+.+.+ +||.+.+ |--..|+.++.+=+.+|-.|.-++..++.| +.+.-+++||+
T Consensus 751 e~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~ 821 (1200)
T KOG0964|consen 751 EEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEAN 821 (1200)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443333 3444443 222356667777777777777777766554 34455566554
No 236
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=48.20 E-value=53 Score=30.05 Aligned_cols=47 Identities=21% Similarity=0.286 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhh
Q 030034 46 QRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADK 92 (184)
Q Consensus 46 Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~ 92 (184)
+.+|.+.|+++=.-|-.+.-.||..+.....||+.|++.|-.+..++
T Consensus 246 kRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~~r 292 (294)
T KOG4571|consen 246 KRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYKKR 292 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78899999999999999999999999999999999999988766543
No 237
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=47.67 E-value=1.2e+02 Score=26.68 Aligned_cols=27 Identities=41% Similarity=0.546 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 114 EPVRAEVVQLRAEVQKLNSSRQELTTQ 140 (184)
Q Consensus 114 e~~k~El~Q~r~e~q~L~~~RQELt~q 140 (184)
+.+-.|+.|++.+-|+|...||-|.+.
T Consensus 48 ~~L~~e~~~l~~eqQ~l~~er~~l~~e 74 (228)
T PRK06800 48 KSLHKELNQLRQEQQKLERERQQLLAD 74 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666555555443
No 238
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=47.46 E-value=1.1e+02 Score=22.54 Aligned_cols=47 Identities=15% Similarity=0.300 Sum_probs=38.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 030034 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLI 159 (184)
Q Consensus 113 ~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip 159 (184)
.|.||+|...+-.|+..+...+.++-.++++-.+|++..+.-+-.+-
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE 52 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELE 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999999999888888888776554443
No 239
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=47.40 E-value=37 Score=33.82 Aligned_cols=47 Identities=21% Similarity=0.371 Sum_probs=41.0
Q ss_pred HHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 97 RELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTK 146 (184)
Q Consensus 97 Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltq 146 (184)
+...+|+.-||.|+. .++++.+-.+.-|..|...|.||+-+|-.||.
T Consensus 593 kG~Aeki~~me~Ei~---glq~DkQ~ar~qIh~Le~~Reelsk~V~DLts 639 (790)
T PF07794_consen 593 KGYAEKIGFMEMEIG---GLQADKQTARNQIHRLEQRREELSKRVMDLTS 639 (790)
T ss_pred hhhHhhhhhhhhhhc---chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999886 56789999999999999999999999988764
No 240
>PRK15396 murein lipoprotein; Provisional
Probab=47.19 E-value=1.1e+02 Score=22.69 Aligned_cols=38 Identities=18% Similarity=0.389 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (184)
Q Consensus 115 ~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~ 152 (184)
.|..++..+.+++..|.+.=+.+...++....|-.|++
T Consensus 29 ~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN 66 (78)
T PRK15396 29 QLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARAN 66 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666666666666666666554
No 241
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=47.11 E-value=3.6e+02 Score=29.15 Aligned_cols=96 Identities=21% Similarity=0.303 Sum_probs=42.0
Q ss_pred HHHHHhhhhhhhhhhhHHhHHHHHHhhhh----hhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 77 EIHRLGQIIPKLRADKEAHTRELFDRGLK----LEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (184)
Q Consensus 77 El~~l~~~i~~i~ae~e~q~Rel~ek~~K----mEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~ 152 (184)
++..+-.-+.+..+++|-.+-++.-.+-. +|+.-+-.+.-..|..-+..|+..|....+-+-.+..++...+..+.
T Consensus 770 ~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~ 849 (1174)
T KOG0933|consen 770 KISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLK 849 (1174)
T ss_pred HHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566677777776666544433 23222223333333333344444433333333333333333333332
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHh
Q 030034 153 AENKQLIAMRADIDGIRSELVEA 175 (184)
Q Consensus 153 ~d~qqip~l~aEid~lrqElqr~ 175 (184)
+ .++.+.+.+++...+.-.+
T Consensus 850 ~---e~~~l~~kv~~~~~~~~~~ 869 (1174)
T KOG0933|consen 850 S---ELGNLEAKVDKVEKDVKKA 869 (1174)
T ss_pred H---HHHHHHHHHHhHHhHHHHH
Confidence 2 2344444444444444333
No 242
>PHA02414 hypothetical protein
Probab=46.70 E-value=96 Score=24.55 Aligned_cols=73 Identities=19% Similarity=0.311 Sum_probs=57.5
Q ss_pred hhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHH
Q 030034 91 DKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENK-----QLIAMRADI 165 (184)
Q Consensus 91 e~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~q-----qip~l~aEi 165 (184)
|.|-+|-.|+.+.-.+|.-+.-++-..+ ++-..|..+=.||-.=|-++.+|++ .+++.| ||.-|-.-|
T Consensus 1 ~~D~~in~Lv~~v~~ledKiQ~Gelt~k------gdn~eL~~av~ELRdivvslDKd~A-v~sEKqshi~yQi~~Lee~i 73 (111)
T PHA02414 1 EMDKEINNLVSQVETLEDKIQEGELTDK------GDNKELEVAVAELRDIVVSLDKDVA-VNSEKQSHIYYQIERLEEKI 73 (111)
T ss_pred CcchHHHHHHHHHHHHHHHHhcCccccC------CchHHHHHHHHHHHHHHHHhhhHhh-hhHHHhhHHHHHHHHHHHHH
Confidence 4577889999999999999988887653 5888888888899999999999986 345544 667777777
Q ss_pred HHHHH
Q 030034 166 DGIRS 170 (184)
Q Consensus 166 d~lrq 170 (184)
+.|++
T Consensus 74 ~aL~~ 78 (111)
T PHA02414 74 SALAE 78 (111)
T ss_pred HHHHh
Confidence 77764
No 243
>PRK12704 phosphodiesterase; Provisional
Probab=46.50 E-value=2.8e+02 Score=26.83 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=10.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHH
Q 030034 151 LEAENKQLIAMRADIDGIRSELVE 174 (184)
Q Consensus 151 ~~~d~qqip~l~aEid~lrqElqr 174 (184)
+....+.+-....+++.+..|+..
T Consensus 112 L~~re~~Le~re~eLe~~~~~~~~ 135 (520)
T PRK12704 112 LEKKEKELEQKQQELEKKEEELEE 135 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444443
No 244
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=46.45 E-value=37 Score=25.96 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=22.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTK 146 (184)
Q Consensus 112 a~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltq 146 (184)
+...+++++.+++.++++|....+.|..+|..|..
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34456667777777777777766666666666654
No 245
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=46.36 E-value=2.8e+02 Score=26.74 Aligned_cols=116 Identities=22% Similarity=0.281 Sum_probs=78.3
Q ss_pred HHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhh-hhc-chhHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 030034 68 QRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVE-LRA-SEPVRAEVV----QLRAEVQKLNSSRQELTTQI 141 (184)
Q Consensus 68 rqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEae-lRa-~e~~k~El~----Q~r~e~q~L~~~RQELt~qv 141 (184)
..||...++||-.|++.-.+..++-..-|-.+.+|+.++-.= +-+ ..+=|+=+. .+-.+.++|.+-=.+|..-|
T Consensus 154 ~~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~v 233 (426)
T smart00806 154 RAELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDII 233 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888888888888888888888888888877431 111 122233222 22345555666556666666
Q ss_pred HHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHhhhhhcccc
Q 030034 142 KGLTKDVNR--LEAENKQLIAMRADIDGIRSELVEARFEIRYFL 183 (184)
Q Consensus 142 q~ltqeL~r--~~~d~qqip~l~aEid~lrqElqr~Raa~EyEk 183 (184)
..|.+|+.. .+.-.+|+-.+..||+...+||+..-..|.-||
T Consensus 234 E~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eK 277 (426)
T smart00806 234 EALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEK 277 (426)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 666666653 345568889999999999999988877776554
No 246
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=46.16 E-value=2e+02 Score=26.68 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=6.1
Q ss_pred HHHHHhhHHHHHHHhh
Q 030034 68 QRELTASKDEIHRLGQ 83 (184)
Q Consensus 68 rqeL~aaq~El~~l~~ 83 (184)
+.++...+.++..+..
T Consensus 340 ~~~~~~~~~~l~~l~~ 355 (451)
T PF03961_consen 340 EEELEELKEELEKLKK 355 (451)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333444443333
No 247
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=46.07 E-value=17 Score=30.49 Aligned_cols=44 Identities=39% Similarity=0.551 Sum_probs=25.5
Q ss_pred hhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030034 91 DKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQEL 137 (184)
Q Consensus 91 e~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQEL 137 (184)
|-|..+-.-|||.+-||.||.--|.|+-|+|.++-|+..| ||||
T Consensus 4 D~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~RDL---KqEl 47 (166)
T PF04880_consen 4 DFESKLNQAIERNALLESELDEKENLREEVQRLKDELRDL---KQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-----------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 4567777889999999999988888888888888776544 6777
No 248
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=45.77 E-value=2.5e+02 Score=25.91 Aligned_cols=98 Identities=22% Similarity=0.346 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHHHHHHHHh-hhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhH
Q 030034 38 TLEEEIEIQRREMHRIISE-NRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPV 116 (184)
Q Consensus 38 ~LEe~La~Q~~EiqrLl~d-NqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~ 116 (184)
+|+|++-.=...|..-.++ +..|.+--|+|--||--.+.|-..| =..+-.+=..++-+.|.+..|..
T Consensus 175 ~lkee~d~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmei----L~aRqkkAeeLkrltd~A~~MsE-------- 242 (302)
T PF07139_consen 175 VLKEEMDSSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEI----LDARQKKAEELKRLTDRASQMSE-------- 242 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhcCH--------
Confidence 5677766666666554444 4567777899999999888886554 44555666788999999999973
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 030034 117 RAEVVQLRAEVQKLNSSRQ--ELTTQIKGLTKDV 148 (184)
Q Consensus 117 k~El~Q~r~e~q~L~~~RQ--ELt~qvq~ltqeL 148 (184)
..|..+|+||+-+++.|+ |=.+++-.++=|+
T Consensus 243 -~Ql~ELRadIK~fvs~rk~de~lg~~~rf~~d~ 275 (302)
T PF07139_consen 243 -EQLAELRADIKHFVSERKYDEELGRAARFTCDP 275 (302)
T ss_pred -HHHHHHHHHHHHHhhhhhhHHHHhHhhhcccCH
Confidence 478899999999999996 3334444444443
No 249
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=45.71 E-value=3e+02 Score=26.87 Aligned_cols=78 Identities=19% Similarity=0.325 Sum_probs=46.4
Q ss_pred hhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 59 HAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELT 138 (184)
Q Consensus 59 RLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt 138 (184)
+....-..|..++...+.||..++..+..+-.+. .+..+.++..+++. ++..+..++.++......+.
T Consensus 388 ~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e--~i~~l~e~l~~l~~----------~l~~~~~~~~~~~~~~~~~~ 455 (650)
T TIGR03185 388 ELQDAKSQLLKELRELEEELAEVDKKISTIPSEE--QIAQLLEELGEAQN----------ELFRSEAEIEELLRQLETLK 455 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH--HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 3457788899999999999999988887665442 55555555555543 33334444444444444444
Q ss_pred HHHHHHHHHH
Q 030034 139 TQIKGLTKDV 148 (184)
Q Consensus 139 ~qvq~ltqeL 148 (184)
.++..+.+++
T Consensus 456 ~~i~~~~~~~ 465 (650)
T TIGR03185 456 EAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 250
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=45.37 E-value=51 Score=22.51 Aligned_cols=30 Identities=27% Similarity=0.551 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGL 144 (184)
Q Consensus 115 ~~k~El~Q~r~e~q~L~~~RQELt~qvq~l 144 (184)
.++.++.++..++.+|.....+|..+++.+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555555555555555544
No 251
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=45.22 E-value=64 Score=31.33 Aligned_cols=41 Identities=22% Similarity=0.325 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030034 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN 155 (184)
Q Consensus 115 ~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~ 155 (184)
.+.+.|..++.|.+.+.+.++++..+++.+..|+++++...
T Consensus 80 ELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 80 QMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44566666677777777777777777777777766665543
No 252
>TIGR01808 CM_M_hiGC-arch monofunctional chorismate mutase, high GC gram positive type. This model represents the monofunctional chorismate mutase from high GC gram-positive bacteria and archaea. Trusted annotations from Corynebacterium and Pyrococcus are aparrently the sole chorismate mutase enzymes in their respective genomes. This is coupled with the presence in those genomes of the enzymes of the chorismate pathways both up- and downstream of chorismate mutase.
Probab=45.16 E-value=69 Score=22.90 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (184)
Q Consensus 114 e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqe 147 (184)
+.+|.++.++-.++-+|.+.|..++.+|..+.+.
T Consensus 3 ~~lR~~ID~ID~~ii~LL~~R~~~~~~i~~~K~~ 36 (74)
T TIGR01808 3 DTLREEIDRLDAEILALVKRRAEISQAIGKARMA 36 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999777664
No 253
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=44.72 E-value=3e+02 Score=26.61 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=33.5
Q ss_pred HHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 99 LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (184)
Q Consensus 99 l~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~ 152 (184)
|-.+-..|+..-...+..++++.....+...+...+..--.++.+||+|=+|..
T Consensus 99 Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~eak~~ 152 (514)
T TIGR03319 99 LDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEI 152 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 334444455555555566666666666777766666666777777777755543
No 254
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=44.64 E-value=79 Score=26.99 Aligned_cols=45 Identities=18% Similarity=0.336 Sum_probs=28.5
Q ss_pred HhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 94 AHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIK 142 (184)
Q Consensus 94 ~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq 142 (184)
..+++|++|..+++. +=.+..||.+++.|+..+....+.|..+|.
T Consensus 149 ~rl~~ll~ka~~~~d----~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 149 ERLLELLEKAKTVED----LLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHhcCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345555555554443 225667777778888777777777776664
No 255
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=43.76 E-value=98 Score=22.19 Aligned_cols=25 Identities=12% Similarity=0.381 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhcc
Q 030034 157 QLIAMRADIDGIRSELVEARFEIRY 181 (184)
Q Consensus 157 qip~l~aEid~lrqElqr~Raa~Ey 181 (184)
=++.|...++.+..++-.+...+.|
T Consensus 63 ~~~~L~~~~~~~~~~i~~l~~~~~~ 87 (106)
T PF01920_consen 63 AIEELEERIEKLEKEIKKLEKQLKY 87 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777666554
No 256
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=43.63 E-value=1.5e+02 Score=27.70 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=6.9
Q ss_pred hhHHHHHHHHHHHHHH
Q 030034 114 EPVRAEVVQLRAEVQK 129 (184)
Q Consensus 114 e~~k~El~Q~r~e~q~ 129 (184)
+.+++|.-.+..++.+
T Consensus 45 ~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 45 EELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 257
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=43.41 E-value=1.3e+02 Score=23.33 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 030034 135 QELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 135 QELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (184)
.+|..++..+..++..++. +|-.|..|-..|+-|.+++|.-+
T Consensus 11 ~~le~~l~~l~~~~~~LK~---~~~~l~EEN~~L~~EN~~Lr~~l 52 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKK---QLQELLEENARLRIENEHLRERL 52 (107)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555554444443 33345555566666666666554
No 258
>PRK06285 chorismate mutase; Provisional
Probab=43.32 E-value=1.3e+02 Score=22.20 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=31.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (184)
Q Consensus 113 ~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqe 147 (184)
.+.+|+++..+-.++-+|.+.|..++.+|-.+.++
T Consensus 9 L~elR~~ID~ID~~iv~Ll~~R~~l~~~I~~~K~~ 43 (96)
T PRK06285 9 LNEIRKRIDEIDEQIIDLIAERTSLAKEIAELKKS 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999888776
No 259
>PRK14127 cell division protein GpsB; Provisional
Probab=43.12 E-value=1e+02 Score=24.14 Aligned_cols=62 Identities=11% Similarity=0.135 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhh---------HHhHHHHHHhhhhhhhhh
Q 030034 42 EIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADK---------EAHTRELFDRGLKLEVEL 110 (184)
Q Consensus 42 ~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~---------e~q~Rel~ek~~KmEael 110 (184)
=|..=..+++.|..+|.+|-.....|+..|...+. .+...+... -.---+++.|+..||-.+
T Consensus 31 FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~-------~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~LEk~V 101 (109)
T PRK14127 31 FLDDVIKDYEAFQKEIEELQQENARLKAQVDELTK-------QVSVGASSSSVATTQPSSSATNYDILKRLSNLEKHV 101 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhccccccccccccCCCCCcchHHHHHHHHHHHHHH
Confidence 33333446666666666655555555555554444 333332221 123346777888887654
No 260
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=42.98 E-value=1.2e+02 Score=23.89 Aligned_cols=67 Identities=24% Similarity=0.363 Sum_probs=39.0
Q ss_pred HHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhh--hhh---hhhHHhHHHHHHhhhhhhhhhhcch
Q 030034 48 REMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIP--KLR---ADKEAHTRELFDRGLKLEVELRASE 114 (184)
Q Consensus 48 ~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~--~i~---ae~e~q~Rel~ek~~KmEaelRa~e 114 (184)
.|.+.|+-.=+.+...-+.++.++.....+|+-.+.... ..+ ..-..+++++++.+..+=.+++..+
T Consensus 6 ~EA~~lLP~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~Gv~vKd~~ 77 (120)
T PF09969_consen 6 EEANALLPLLRPILEEIRELKAELEELEERLQELEDSLEVNGLEAELEELEARLRELIDEIEELGVEVKDLD 77 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHHHHHHcCcEEeCCc
Confidence 356666666667777777777777777777766644331 111 2334455555555555555555544
No 261
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=42.96 E-value=2.1e+02 Score=24.37 Aligned_cols=50 Identities=24% Similarity=0.353 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 030034 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDG 167 (184)
Q Consensus 118 ~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~ 167 (184)
.|+.++..++..|....+.|...|.+..+++..++....++-..+.+|..
T Consensus 56 ~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p 105 (251)
T PF11932_consen 56 AEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP 105 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666666666666666666666666555555555544
No 262
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=42.95 E-value=1.4e+02 Score=22.40 Aligned_cols=95 Identities=15% Similarity=0.142 Sum_probs=43.9
Q ss_pred HHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 68 QRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (184)
Q Consensus 68 rqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqe 147 (184)
+++|+.++.++......+..+....+.....+-+....- ..+-..-....=+.++...|......-..+...|....+.
T Consensus 19 ~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g-~~~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~ 97 (141)
T TIGR02473 19 KLELAKAQAEFERLETQLQQLIKYREEYEQQALEKVGAG-TSALELSNYQRFIRQLDQRIQQQQQELALLQQEVEAKRER 97 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555544444333322211110 0111111223334444444444444445555555566666
Q ss_pred HHHHHHhhhhHHHHHH
Q 030034 148 VNRLEAENKQLIAMRA 163 (184)
Q Consensus 148 L~r~~~d~qqip~l~a 163 (184)
|..+..+.+.+.-|+.
T Consensus 98 l~~a~~~~k~lekL~e 113 (141)
T TIGR02473 98 LLEARRELKALEKLKE 113 (141)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666666554
No 263
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=42.89 E-value=3.4e+02 Score=26.72 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Q 030034 123 LRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEAR 176 (184)
Q Consensus 123 ~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~R 176 (184)
+..++..+.+.-..|..++..+.+.+........++-.|.-|.+..++=|.-+-
T Consensus 343 ~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll 396 (754)
T TIGR01005 343 LLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYL 396 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666678888888888888888888888888888888777665543
No 264
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=42.84 E-value=1.5e+02 Score=30.22 Aligned_cols=76 Identities=26% Similarity=0.346 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhhhhhHHhhHHH---HHHHHhhHHHHHHHhhhhhhhhhhhHH---hHHHHHHhhhhhhhhhhcchhHHH
Q 030034 45 IQRREMHRIISENRHAIDDNTHL---QRELTASKDEIHRLGQIIPKLRADKEA---HTRELFDRGLKLEVELRASEPVRA 118 (184)
Q Consensus 45 ~Q~~EiqrLl~dNqRLAathvaL---rqeL~aaq~El~~l~~~i~~i~ae~e~---q~Rel~ek~~KmEaelRa~e~~k~ 118 (184)
---.|+..|+-+|--|..|--|| |-+|.+-=+||--=+.++. .|.|. ---.|-+|+.++|.||+ -+|+
T Consensus 298 GMGrEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLr---gElea~kqak~Klee~i~elEEElk---~~k~ 371 (832)
T KOG2077|consen 298 GMGREVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLR---GELEAVKQAKLKLEEKIRELEEELK---KAKA 371 (832)
T ss_pred cchHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 45689999999999999998887 6778777666654443332 22221 11235567777787776 4566
Q ss_pred HHHHHHHH
Q 030034 119 EVVQLRAE 126 (184)
Q Consensus 119 El~Q~r~e 126 (184)
|+.-+|-+
T Consensus 372 ea~~ar~~ 379 (832)
T KOG2077|consen 372 EAEDARQK 379 (832)
T ss_pred HHHHHHHh
Confidence 66655443
No 265
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=42.78 E-value=1.9e+02 Score=23.90 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030034 123 LRAEVQKLNSSRQELTTQI 141 (184)
Q Consensus 123 ~r~e~q~L~~~RQELt~qv 141 (184)
++.=+.+|...|++|.+=+
T Consensus 45 i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 45 IRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 266
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=42.66 E-value=1.1e+02 Score=29.32 Aligned_cols=54 Identities=7% Similarity=0.172 Sum_probs=30.6
Q ss_pred hhhhHHhhHH-HHHHHHhhHHHHHHHhhhhhhhhhhh-----HHhHHHHHHhhhhhhhhh
Q 030034 57 NRHAIDDNTH-LQRELTASKDEIHRLGQIIPKLRADK-----EAHTRELFDRGLKLEVEL 110 (184)
Q Consensus 57 NqRLAathva-LrqeL~aaq~El~~l~~~i~~i~ae~-----e~q~Rel~ek~~KmEael 110 (184)
|+|...+-+. .+.|+..|+.-+..-...+.+.|... +.+.-.++.-+.+||++|
T Consensus 236 s~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qL 295 (434)
T PRK15178 236 SARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQL 295 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHH
Confidence 5565555443 46677777777777766666666544 334444444444444433
No 267
>PLN02320 seryl-tRNA synthetase
Probab=42.60 E-value=3.2e+02 Score=26.68 Aligned_cols=28 Identities=25% Similarity=0.576 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 116 VRAEVVQLRAEVQKLNSSRQELTTQIKG 143 (184)
Q Consensus 116 ~k~El~Q~r~e~q~L~~~RQELt~qvq~ 143 (184)
+-.+..++..++..|.+.|..++.++..
T Consensus 98 ld~~~r~~~~~~~~lr~ern~~sk~i~~ 125 (502)
T PLN02320 98 LYENMLALQKEVERLRAERNAVANKMKG 125 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555666666666666666643
No 268
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=42.51 E-value=3.8e+02 Score=27.22 Aligned_cols=74 Identities=23% Similarity=0.285 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhc
Q 030034 38 TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRA 112 (184)
Q Consensus 38 ~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa 112 (184)
..+.+|.....=+++|=.+|+-|-+....|+.++...+.+|.++..-+. ...=++.+++.+=.++.+|+-+|.-
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-~~~~~~rei~~~~~~I~~L~~~L~e 492 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR-DKVRKDREIRARDRRIERLEKELEE 492 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555554443222 2333344455555666666665543
No 269
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=42.43 E-value=2.1e+02 Score=24.23 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=21.9
Q ss_pred HHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhh
Q 030034 54 ISENRHAIDDNTHLQRELTASKDEIHRLGQII 85 (184)
Q Consensus 54 l~dNqRLAathvaLrqeL~aaq~El~~l~~~i 85 (184)
+.-|..|-+..-.|.++|...++++..+|..=
T Consensus 135 ~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~R 166 (221)
T PF05700_consen 135 LIHNEQLEAMLKRLEKELAKLKKEIEEVNRER 166 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777777776543
No 270
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=41.94 E-value=1.3e+02 Score=25.73 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 030034 134 RQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRS 170 (184)
Q Consensus 134 RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrq 170 (184)
.++|..+-+.|.+|++.++.++.++-.+++|.+.|++
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~ 107 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444443
No 271
>TIGR01807 CM_P2 chorismate mutase domain of proteobacterial P-protein, clade 2. This model represents one of two separate clades of the chorismate mutase domain of the gamma and beta and epsilon proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain. It is also found in Aquifex aolicus.
Probab=41.56 E-value=87 Score=22.08 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (184)
Q Consensus 114 e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqe 147 (184)
+.+|+++..+-.++=.|.+.|..++.+|-.+.+.
T Consensus 2 ~~lR~~ID~iD~~iv~Ll~~R~~~~~~i~~~K~~ 35 (76)
T TIGR01807 2 EELRNKIDAIDDRILDLLSERATYAQAVGELKGS 35 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999777665
No 272
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=41.54 E-value=2.4e+02 Score=24.54 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=17.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQ 140 (184)
Q Consensus 113 ~e~~k~El~Q~r~e~q~L~~~RQELt~q 140 (184)
...|+.||.+-...++.|..-.++|+-.
T Consensus 103 a~vmr~eV~~Y~~KL~eLE~kq~~L~rE 130 (195)
T PF10226_consen 103 ASVMRQEVAQYQQKLKELEDKQEELIRE 130 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777777776666666555555443
No 273
>TIGR01805 CM_mono_grmpos monofunctional chorismate mutase, gram positive-type, clade 2. This model represents a clade of chorismate mutase proteins/domains from gram positive species. The sequence from Enterococcus is fused to the C-terminus of an aparrent acetyltransferase, and the seuence from Clostridium acetobutylicum (but not perfringens) is fused to the N-terminus of shikimate-5-dehydrogenase, another enzyme of the chorismate pathway. All the other members of this clade are mono-functional. Members of this clade from Streptococcus and Lactococcus have been found which represent the sole chorismate mutase domain in their respective genomes which also exhibit evidence of the enzymes of both the upstream and downstream branches of the chorismate pathways.
Probab=41.48 E-value=91 Score=22.23 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (184)
Q Consensus 114 e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqe 147 (184)
+.+|.++.++-.++-+|.+.|-.++.+|-.+.+.
T Consensus 2 ~~lR~~Id~iD~~i~~Ll~~R~~~~~~i~~~K~~ 35 (81)
T TIGR01805 2 ELIRKKIDEIDDKLVVLFEERMEVVKEIAAYKKK 35 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999888776
No 274
>smart00338 BRLZ basic region leucin zipper.
Probab=41.44 E-value=1.1e+02 Score=20.79 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHH
Q 030034 47 RREMHRIISENRHAIDDNTHLQRELTASKDEI 78 (184)
Q Consensus 47 ~~EiqrLl~dNqRLAathvaLrqeL~aaq~El 78 (184)
..+++.|-..|..|......|+.++...+.++
T Consensus 32 e~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 32 ERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666666666666666666665555443
No 275
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=41.21 E-value=3e+02 Score=25.56 Aligned_cols=75 Identities=13% Similarity=0.264 Sum_probs=46.0
Q ss_pred HHHhhhhhhhhhh-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------------HHH
Q 030034 99 LFDRGLKLEVELR-ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ-----------------LIA 160 (184)
Q Consensus 99 l~ek~~KmEaelR-a~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qq-----------------ip~ 160 (184)
.+||+.+-|.-|- -.+++..|..+++.+..+....-+++++-|..+|++|+++..++.+ +--
T Consensus 253 ~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~ 332 (359)
T PF10498_consen 253 TLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVK 332 (359)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHH
Confidence 4555555554443 3457777777777777777777777777777777776666544333 334
Q ss_pred HHHHHHHHHHHHH
Q 030034 161 MRADIDGIRSELV 173 (184)
Q Consensus 161 l~aEid~lrqElq 173 (184)
+|.=|-.|++|+.
T Consensus 333 IKqAl~kLk~EI~ 345 (359)
T PF10498_consen 333 IKQALTKLKQEIK 345 (359)
T ss_pred HHHHHHHHHHHHH
Confidence 5555566666664
No 276
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=40.96 E-value=1.9e+02 Score=23.18 Aligned_cols=71 Identities=23% Similarity=0.321 Sum_probs=47.3
Q ss_pred hhhhhhhhhhcchhHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 030034 102 RGLKLEVELRASEPVRAEVVQLRAEV------------QKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIR 169 (184)
Q Consensus 102 k~~KmEaelRa~e~~k~El~Q~r~e~------------q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lr 169 (184)
...++|++|+-++-+..|+..+-.|. .+...+..+|..++..+...+..+. .|.-.+..+++.|+
T Consensus 28 qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLe---kQe~~l~e~l~eLq 104 (119)
T COG1382 28 QKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLE---KQEEKLQERLEELQ 104 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 33566777777777777776665552 1344566777777777776665554 46667788888888
Q ss_pred HHHHHh
Q 030034 170 SELVEA 175 (184)
Q Consensus 170 qElqr~ 175 (184)
.+|+.+
T Consensus 105 ~~i~~~ 110 (119)
T COG1382 105 SEIQKA 110 (119)
T ss_pred HHHHHH
Confidence 888764
No 277
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=40.78 E-value=2e+02 Score=24.47 Aligned_cols=69 Identities=22% Similarity=0.350 Sum_probs=39.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhcc
Q 030034 112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEIRY 181 (184)
Q Consensus 112 a~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 181 (184)
..+-+-.+...+.+.++.|...++.|..-+..-. .+.-.-.=-++|-.++.|||.+...+......+.|
T Consensus 126 ~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~-~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 126 SSEDVTEQYVDLEARLKNLEAEEERLLELLEKAK-TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 3455566666666666666666655554443221 22222222345556777888888888777777666
No 278
>PLN02678 seryl-tRNA synthetase
Probab=40.67 E-value=1.7e+02 Score=27.89 Aligned_cols=30 Identities=33% Similarity=0.453 Sum_probs=14.7
Q ss_pred HHhhhhhhhhhhc----chhHHHHHHHHHHHHHH
Q 030034 100 FDRGLKLEVELRA----SEPVRAEVVQLRAEVQK 129 (184)
Q Consensus 100 ~ek~~KmEaelRa----~e~~k~El~Q~r~e~q~ 129 (184)
+|++.++..+.|. .+.+++|--++..+|.+
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAK 65 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555443 34455555555555544
No 279
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=40.64 E-value=4.5e+02 Score=27.51 Aligned_cols=46 Identities=24% Similarity=0.346 Sum_probs=32.8
Q ss_pred hhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhh
Q 030034 63 DNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVEL 110 (184)
Q Consensus 63 thvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEael 110 (184)
.+-|||.|+-..++||.- ....+.-+|+|-+|+.|+.-+-||-.+.
T Consensus 424 ERDalr~e~kslk~ela~--~l~~DeLaEkdE~I~~lm~EGEkLSK~q 469 (961)
T KOG4673|consen 424 ERDALRREQKSLKKELAA--ALLKDELAEKDEIINQLMAEGEKLSKKQ 469 (961)
T ss_pred hHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 466788888888887753 2233577889999999988777765443
No 280
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=40.43 E-value=1e+02 Score=28.63 Aligned_cols=73 Identities=16% Similarity=0.294 Sum_probs=35.9
Q ss_pred HHHHHHHhhhhh-hhhhhhHHhHHHHHHhhhhhhhhhhc-chhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 030034 75 KDEIHRLGQIIP-KLRADKEAHTRELFDRGLKLEVELRA-SEPVRAEVVQLRAEVQK----LNSSRQELTTQIKGLTKDV 148 (184)
Q Consensus 75 q~El~~l~~~i~-~i~ae~e~q~Rel~ek~~KmEaelRa-~e~~k~El~Q~r~e~q~----L~~~RQELt~qvq~ltqeL 148 (184)
+.|+.|+.-.+. .++++. -.-|.=+++..++-.-+.+ ...++..|..++.|+.+ +.+-=+-|..|+..+.++.
T Consensus 197 klEvERV~PqLKv~~~~d~-kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eY 275 (359)
T PF10498_consen 197 KLEVERVLPQLKVTIRADA-KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEY 275 (359)
T ss_pred HHHHHHHhhhheeeccCCc-chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345555544332 234444 4555556666665555543 34566666666666542 3333334444444444443
No 281
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=40.42 E-value=50 Score=32.01 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhh
Q 030034 44 EIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQ 83 (184)
Q Consensus 44 a~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~ 83 (184)
....+.+..|...|.+|+++-...|++|...+.+|.+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 43 (512)
T TIGR03689 4 RELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQ 43 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456678889999999999999999999999999999864
No 282
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=40.37 E-value=1.9e+02 Score=23.10 Aligned_cols=64 Identities=20% Similarity=0.249 Sum_probs=39.9
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHH
Q 030034 65 THLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQ 128 (184)
Q Consensus 65 vaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q 128 (184)
-+|.+++.-.+.++++--.-.+.-++--=..+-||+++..-+|..+.....==.|+.-+-.||.
T Consensus 11 ~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemKpVT~dV~ 74 (112)
T PF07439_consen 11 GTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSEMKPVTDDVK 74 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhccchHHHHH
Confidence 3455555556666665555555555555566778888888888766655555555555555554
No 283
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=40.15 E-value=2.9e+02 Score=25.13 Aligned_cols=17 Identities=18% Similarity=0.423 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHHHHH
Q 030034 156 KQLIAMRADIDGIRSEL 172 (184)
Q Consensus 156 qqip~l~aEid~lrqEl 172 (184)
.++-..++++..++..+
T Consensus 234 ~~l~~~~~~l~~~~~~l 250 (421)
T TIGR03794 234 ARIKEARYEIEELENKL 250 (421)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555566666666655
No 284
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=39.96 E-value=1.6e+02 Score=26.75 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=45.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 030034 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD--------------VNRLEAENKQLIAMRADIDGIRSELVE 174 (184)
Q Consensus 113 ~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqe--------------L~r~~~d~qqip~l~aEid~lrqElqr 174 (184)
.+.+|+++.++-.++-+|.+.|..++.+|-.+.++ +++....+...+.-...++.+=+.+..
T Consensus 5 L~~lR~~ID~iD~~iv~Ll~~R~~~~~~ia~~K~~~~~~v~d~~Re~~vl~~~~~~~~~~~l~~~~~~~i~~~i~~ 80 (374)
T PRK11199 5 LTALRDQIDEVDKQLLELLAKRLELVAQVGEVKSRHGLPIYVPEREAAMLASRRAEAEALGVPPDLIEDVLRRVMR 80 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 56799999999999999999999999999888776 445554444444444445666665553
No 285
>PF14282 FlxA: FlxA-like protein
Probab=39.58 E-value=1.2e+02 Score=23.02 Aligned_cols=18 Identities=17% Similarity=0.267 Sum_probs=8.2
Q ss_pred HHhHHHHHHhhhhhhhhh
Q 030034 93 EAHTRELFDRGLKLEVEL 110 (184)
Q Consensus 93 e~q~Rel~ek~~KmEael 110 (184)
+.+|..|-.++..|..+|
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql 35 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQL 35 (106)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 286
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=39.51 E-value=1.8e+02 Score=22.61 Aligned_cols=41 Identities=20% Similarity=0.356 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhh
Q 030034 46 QRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIP 86 (184)
Q Consensus 46 Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~ 86 (184)
...++..++..|..||.....+.-+|...+.++......+.
T Consensus 32 ~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~ 72 (150)
T PF07200_consen 32 LQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELK 72 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666655554444433
No 287
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=38.54 E-value=46 Score=23.36 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 030034 160 AMRADIDGIRSELVEARFE 178 (184)
Q Consensus 160 ~l~aEid~lrqElqr~Raa 178 (184)
.+...|++++.|++..|..
T Consensus 11 ~~~~~i~tvk~en~~i~~~ 29 (55)
T PF05377_consen 11 RIESSINTVKKENEEISES 29 (55)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444443333
No 288
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=38.50 E-value=29 Score=37.98 Aligned_cols=32 Identities=19% Similarity=0.102 Sum_probs=14.0
Q ss_pred CCCCCCCCCcccCCCC---CCCCChhh-hHHHHHHH
Q 030034 15 RGFRDGPRPVLTRGLA---PMHFHPMT-LEEEIEIQ 46 (184)
Q Consensus 15 rg~r~~p~p~~~~g~~---~~~p~p~~-LEe~La~Q 46 (184)
+|++.+|+|..+--|| |+||+|.+ ++.|-..|
T Consensus 6 pg~ppppppppg~epps~pppPppPg~~~~~r~~k~ 41 (2365)
T COG5178 6 PGNPPPPPPPPGFEPPSQPPPPPPPGVNVKKRSRKQ 41 (2365)
T ss_pred CCCCcccccCCCCCCCCCCCCccCCCcchhhhcccc
Confidence 4554444433322222 34455554 55554443
No 289
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=38.44 E-value=66 Score=22.55 Aligned_cols=36 Identities=8% Similarity=0.185 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 030034 140 QIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA 175 (184)
Q Consensus 140 qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~ 175 (184)
.+..|..=++.+..-..+-+.+.+.++.|+.||-++
T Consensus 15 DLa~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIakl 50 (53)
T PF08898_consen 15 DLAQMKALAAQAEQQLAEAGDIAAALEKLKAEIAKL 50 (53)
T ss_pred cHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 334444444444444555566777777777776654
No 290
>PRK12704 phosphodiesterase; Provisional
Probab=38.43 E-value=3.8e+02 Score=25.98 Aligned_cols=54 Identities=22% Similarity=0.233 Sum_probs=37.4
Q ss_pred HHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 99 LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (184)
Q Consensus 99 l~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~ 152 (184)
|-.+-.+|+..-...+..+++|.....++.++......--.++.+||+|=+|..
T Consensus 105 Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~~~ 158 (520)
T PRK12704 105 LEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEI 158 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 444444555555566677777777777888777777777778888888866544
No 291
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.42 E-value=2e+02 Score=27.25 Aligned_cols=66 Identities=21% Similarity=0.206 Sum_probs=26.3
Q ss_pred hhhhhhhhHHhHHHHHHhhhhhhhhhhc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 85 IPKLRADKEAHTRELFDRGLKLEVELRA-SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR 150 (184)
Q Consensus 85 i~~i~ae~e~q~Rel~ek~~KmEaelRa-~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r 150 (184)
|..+...=.-.+++-+++..+|=+.|+- .|.++.-...+.++.+.|....+.|...+.-|+.-..-
T Consensus 212 isa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 212 ISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3333333334444444444444444432 23333333333333333333333333333333333333
No 292
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=38.27 E-value=5.4e+02 Score=27.70 Aligned_cols=51 Identities=12% Similarity=0.181 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhc
Q 030034 127 VQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEIR 180 (184)
Q Consensus 127 ~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (184)
++++...=++|+.++...|+.++....++.+ .+..++.++|-+...|--++
T Consensus 260 i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~---~~~~l~~~~q~~~~i~eQi~ 310 (1109)
T PRK10929 260 IVAQFKINRELSQALNQQAQRMDLIASQQRQ---AASQTLQVRQALNTLREQSQ 310 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 6666666777888888888777776544443 45566666666665555443
No 293
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=38.19 E-value=2.4e+02 Score=23.71 Aligned_cols=81 Identities=14% Similarity=0.265 Sum_probs=68.5
Q ss_pred hHHHHHHhhhhhhhhhh----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 030034 95 HTRELFDRGLKLEVELR----ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRS 170 (184)
Q Consensus 95 q~Rel~ek~~KmEaelR----a~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrq 170 (184)
.+-.+.++--+.|-+|- ..+..++=+.-.+.++..|...=++|..-+.-+++|+.=..+.+-|.-.+ ++|.+..
T Consensus 45 ~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~--~veel~e 122 (157)
T COG3352 45 VIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRG--IVEELEE 122 (157)
T ss_pred HHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHH--HHHHHHH
Confidence 45567777788899999 78889999999999999999999999999999999999999998887777 7777776
Q ss_pred HHHHhhh
Q 030034 171 ELVEARF 177 (184)
Q Consensus 171 Elqr~Ra 177 (184)
++-..+-
T Consensus 123 qV~el~~ 129 (157)
T COG3352 123 QVNELKM 129 (157)
T ss_pred HHHHHHH
Confidence 6655543
No 294
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=37.91 E-value=1.8e+02 Score=24.51 Aligned_cols=56 Identities=23% Similarity=0.353 Sum_probs=32.2
Q ss_pred HHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhh
Q 030034 50 MHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKL 106 (184)
Q Consensus 50 iqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~Km 106 (184)
.+.|..+|++|-..--.|++.+...+.|+..|..-...++.|-+. +-.+++++.||
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~-L~~Im~RARkl 154 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQT-LIDIMDRARKL 154 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 344555666666666666666666666666665555555444433 34566666665
No 295
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=37.84 E-value=1.3e+02 Score=27.06 Aligned_cols=67 Identities=18% Similarity=0.295 Sum_probs=28.3
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHhhh
Q 030034 111 RASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENK----QLIAMRADIDGIRSELVEARF 177 (184)
Q Consensus 111 Ra~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~q----qip~l~aEid~lrqElqr~Ra 177 (184)
+.++|.+..+.++..+..+....=++...+++.+...|+.++.+.+ +.-.+..+++....-+.++..
T Consensus 214 ~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~ 284 (344)
T PF12777_consen 214 KEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEK 284 (344)
T ss_dssp CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH
Confidence 4455566555555444444333333333333333333333333221 122334444444444544443
No 296
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.80 E-value=3e+02 Score=24.68 Aligned_cols=76 Identities=22% Similarity=0.332 Sum_probs=47.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhh-hhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHH----hhhhhhhhhh
Q 030034 37 MTLEEEIEIQRREMHRIISEN-RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFD----RGLKLEVELR 111 (184)
Q Consensus 37 ~~LEe~La~Q~~EiqrLl~dN-qRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~e----k~~KmEaelR 111 (184)
.+.+..+.-+.-=|.+.+.+= .++-.+|+.-=+-|+..+.|...|.+.+.....|.=- .-+|++ .-+++|+|+.
T Consensus 18 d~~~~~i~n~~s~~D~f~q~~r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~-~neL~~ek~~~q~~ieqeik 96 (246)
T KOG4657|consen 18 DICEKDIHNQRSKIDSFIQSPRRRSMNSLVEFARALSQSQVELENLKADLRETENELVK-VNELKTEKEARQMGIEQEIK 96 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777776664 4566788888888999999998888777643333221 122333 2455666555
Q ss_pred cc
Q 030034 112 AS 113 (184)
Q Consensus 112 a~ 113 (184)
+.
T Consensus 97 ~~ 98 (246)
T KOG4657|consen 97 AT 98 (246)
T ss_pred HH
Confidence 43
No 297
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=37.64 E-value=4.9e+02 Score=27.01 Aligned_cols=70 Identities=21% Similarity=0.147 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHH-----------hhhhhhhhhhhHHhHHH------HH
Q 030034 38 TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRL-----------GQIIPKLRADKEAHTRE------LF 100 (184)
Q Consensus 38 ~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l-----------~~~i~~i~ae~e~q~Re------l~ 100 (184)
+|-++|.--..||..=++ =|.-+++|+.-|...+.|+..- +--|.+++.|=...+.+ |-
T Consensus 459 ~L~e~IeKLk~E~d~e~S----~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk 534 (762)
T PLN03229 459 ALNEMIEKLKKEIDLEYT----EAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLK 534 (762)
T ss_pred HHHHHHHHHHHHHHHHHH----HhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHH
Confidence 467777766666643322 2566777777777777777773 33355566665555544 44
Q ss_pred Hhhhhhhhhhh
Q 030034 101 DRGLKLEVELR 111 (184)
Q Consensus 101 ek~~KmEaelR 111 (184)
+|.-.|-++.+
T Consensus 535 ~Kle~Lk~~~~ 545 (762)
T PLN03229 535 YKLDMLNEFSR 545 (762)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 298
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=37.55 E-value=1.4e+02 Score=22.09 Aligned_cols=38 Identities=18% Similarity=0.375 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 030034 131 NSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGI 168 (184)
Q Consensus 131 ~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~l 168 (184)
....+.|-.+++.+.+.+.+.......+-.++.+|+++
T Consensus 5 ~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l 42 (129)
T cd00890 5 AAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETL 42 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444444444444444444444444
No 299
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=37.28 E-value=4.4e+02 Score=26.44 Aligned_cols=120 Identities=20% Similarity=0.347 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHhhH----------HHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhh
Q 030034 39 LEEEIEIQRREMHRIISENRHAIDDNT----------HLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEV 108 (184)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRLAathv----------aLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEa 108 (184)
|++-...+--+|..|=..|..|-.-.- .||..-++.+.++....++ |-.+-.|...|+.
T Consensus 226 l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y-----------~~~~~~k~~~~~~ 294 (581)
T KOG0995|consen 226 LEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAY-----------VSQMKSKKQHMEK 294 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHH-----------HHHHHhhhHHHHH
Confidence 444445566788888888888865443 3444445555555554433 4445555555554
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHhhhh----HHHHHHHHHHHHHHH
Q 030034 109 ELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKG--L-TKDVNRLEAENKQ----LIAMRADIDGIRSEL 172 (184)
Q Consensus 109 elRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~--l-tqeL~r~~~d~qq----ip~l~aEid~lrqEl 172 (184)
.++-++.|+.-+-.|+++|.+.+.+|-.+|.. + ..|+.+.+.|..+ |-.+..++|+|.+++
T Consensus 295 ---~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~v 362 (581)
T KOG0995|consen 295 ---KLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEV 362 (581)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888888888888888665532 1 2333333333332 334555666666654
No 300
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=37.16 E-value=2.7e+02 Score=24.00 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 030034 116 VRAEVVQLRAEVQKL 130 (184)
Q Consensus 116 ~k~El~Q~r~e~q~L 130 (184)
.++++..+..+.++.
T Consensus 109 ~~~~l~~a~~~~~R~ 123 (327)
T TIGR02971 109 LEAELETAQREVDRY 123 (327)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 301
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=36.84 E-value=2e+02 Score=22.36 Aligned_cols=67 Identities=33% Similarity=0.414 Sum_probs=33.3
Q ss_pred HHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 71 LTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGL 144 (184)
Q Consensus 71 L~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~l 144 (184)
++..-..++.+...+..+.++.+ .|.++...++.+|. .+|+++.....+++.|...-+++-.+.+.+
T Consensus 22 ~v~~l~~~~~~~~~~~~l~~~n~----~lAe~nL~~~~~l~---~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 22 FVKSLPQVQELQQEREELLAENE----ELAEQNLSLEPELE---ELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HGGGGS--HHHHHHHHHHHHHHH----HHHHHH----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHH----HHHHHhcccchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444456666666666655544 45555555544332 456666666666666665555555554444
No 302
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=36.76 E-value=2.5e+02 Score=23.44 Aligned_cols=65 Identities=20% Similarity=0.301 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhc
Q 030034 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEIR 180 (184)
Q Consensus 114 e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (184)
..+..++..+..+...|...-++|..+...+.+..+...... .-....||+-|++..++.++-++
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~--~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEE--EKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555666666666666666655555544333222 23357788889988888887654
No 303
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=36.54 E-value=2.2e+02 Score=25.24 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhc
Q 030034 160 AMRADIDGIRSELVEARFEIR 180 (184)
Q Consensus 160 ~l~aEid~lrqElqr~Raa~E 180 (184)
.+++.+..++..+..++..++
T Consensus 162 ~~~~~l~~~~~~l~~~~~~l~ 182 (370)
T PRK11578 162 TIDAQIKRNQASLDTAKTNLD 182 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444433
No 304
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=36.50 E-value=1.3e+02 Score=20.18 Aligned_cols=23 Identities=17% Similarity=0.001 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhc
Q 030034 158 LIAMRADIDGIRSELVEARFEIR 180 (184)
Q Consensus 158 ip~l~aEid~lrqElqr~Raa~E 180 (184)
+-.||.++..-.+|+..+|.+|+
T Consensus 17 l~elk~~l~~Q~kE~~~LRntI~ 39 (45)
T PF11598_consen 17 LQELKELLRQQIKETRFLRNTIM 39 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777778899999999885
No 305
>KOG1510 consensus RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7 [Transcription]
Probab=36.41 E-value=1.4e+02 Score=24.74 Aligned_cols=74 Identities=23% Similarity=0.342 Sum_probs=49.7
Q ss_pred HHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 70 ELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (184)
Q Consensus 70 eL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~ 149 (184)
.|+-+-..+.-|-..++..-.=-+.|.+. +.||+ .|..-+--|.+++...-..|..+||++-.+.+
T Consensus 64 ~i~~~akqId~LIdsLP~~~~~~e~Ql~~----i~kLq----------~en~e~~~el~~~v~~~e~Ll~~vq~~le~~a 129 (139)
T KOG1510|consen 64 DIAKKAKQIDTLIDSLPGEEGSAEAQLEK----IKKLQ----------EENEEVALELEELVSKGEKLLEQVQSLLEDIA 129 (139)
T ss_pred HHHHHHHHHHHHHHhCCCcccCHHHHHHH----HHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555544 34444 45555667778888888889999999999999
Q ss_pred HHHHhhhh
Q 030034 150 RLEAENKQ 157 (184)
Q Consensus 150 r~~~d~qq 157 (184)
+.+.+.++
T Consensus 130 ~~~l~~k~ 137 (139)
T KOG1510|consen 130 DLQLNSKK 137 (139)
T ss_pred HHHHhccC
Confidence 98877664
No 306
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=36.20 E-value=1.4e+02 Score=28.46 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhh
Q 030034 157 QLIAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 157 qip~l~aEid~lrqElqr~Raa~ 179 (184)
..+.++..++.+++|++.+|...
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~ 385 (448)
T PF05761_consen 363 SSSELRPDISELRKERRELRREM 385 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666544
No 307
>PRK07857 hypothetical protein; Provisional
Probab=36.08 E-value=87 Score=24.50 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=32.3
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 110 LRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (184)
Q Consensus 110 lRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqe 147 (184)
.-..+.+|.++.++-.++-+|.+.|-.++.+|..+.++
T Consensus 27 ~~~L~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K~~ 64 (106)
T PRK07857 27 DAEIDELREEIDRLDAEILALVKRRTEVSQAIGKARMA 64 (106)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33456799999999999999999999999999887765
No 308
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=35.93 E-value=2.7e+02 Score=23.47 Aligned_cols=106 Identities=11% Similarity=0.184 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHh-hhhhhhhhhhHHhHHHHHHhhhhhhhhh------
Q 030034 38 TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLG-QIIPKLRADKEAHTRELFDRGLKLEVEL------ 110 (184)
Q Consensus 38 ~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~-~~i~~i~ae~e~q~Rel~ek~~KmEael------ 110 (184)
+|+.=|.--..+|...-..=-.+.+++..|.+++..++..+..+. .+-..++.-+|-=.|+.+.+-...+..+
T Consensus 28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~ 107 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERE 107 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333333333333333455667777888888888877766 4555667667766666655443333332
Q ss_pred -----hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 111 -----RASEPVRAEVVQLRAEVQKLNSSRQELTTQIKG 143 (184)
Q Consensus 111 -----Ra~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ 143 (184)
..++.++.-+..+...+..+.+-+..|.++++.
T Consensus 108 ~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~ 145 (219)
T TIGR02977 108 LAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQA 145 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233344444444444444444455544444433
No 309
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=35.65 E-value=82 Score=25.05 Aligned_cols=43 Identities=28% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHH
Q 030034 75 KDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVV 121 (184)
Q Consensus 75 q~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~ 121 (184)
|+|-++. ..-++.-|++=-+|--||+.||.|.|+.+.++.+|.
T Consensus 10 Q~Ew~r~----ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~ 52 (134)
T PF08232_consen 10 QTEWHRF----ERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLK 52 (134)
T ss_pred HHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 310
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=35.61 E-value=2.3e+02 Score=22.55 Aligned_cols=74 Identities=19% Similarity=0.201 Sum_probs=50.4
Q ss_pred HHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q 030034 51 HRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKL 130 (184)
Q Consensus 51 qrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L 130 (184)
+.-.-+--.|...+.+|-+.|++..+=|.-|...+.++.+.- +.....|.++...|+.+
T Consensus 16 ~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~l---------------------e~d~~~L~~Le~~~~~~ 74 (160)
T PF13094_consen 16 REDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAAL---------------------ERDYEYLQELEKNAKAL 74 (160)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
Confidence 444566788999999999999988877776655554333322 24455666777777777
Q ss_pred HHHHHHHHHHHHHHH
Q 030034 131 NSSRQELTTQIKGLT 145 (184)
Q Consensus 131 ~~~RQELt~qvq~lt 145 (184)
.+.+.++..++..+-
T Consensus 75 ~~e~~~~~~~~~~vL 89 (160)
T PF13094_consen 75 EREREEEEKKAHPVL 89 (160)
T ss_pred HHHHHHHHhccchhh
Confidence 777777777754443
No 311
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=35.46 E-value=4.7e+02 Score=26.15 Aligned_cols=13 Identities=31% Similarity=0.529 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 030034 130 LNSSRQELTTQIK 142 (184)
Q Consensus 130 L~~~RQELt~qvq 142 (184)
|+...=|||..+|
T Consensus 179 ltne~~elt~~lq 191 (617)
T PF15070_consen 179 LTNENMELTSALQ 191 (617)
T ss_pred HHHhhhHhhHHHH
Confidence 3434434444443
No 312
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.17 E-value=2.3e+02 Score=25.42 Aligned_cols=31 Identities=16% Similarity=0.383 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 122 QLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (184)
Q Consensus 122 Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~ 152 (184)
-++.|+.++......|.++|..+++.+...+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444445555444444444
No 313
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=35.09 E-value=1.7e+02 Score=20.93 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=25.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (184)
Q Consensus 113 ~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~ 149 (184)
.+.+......+..++.+|......+..++..+...|.
T Consensus 64 ~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777777777777777777666654
No 314
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=34.97 E-value=1.2e+02 Score=26.55 Aligned_cols=45 Identities=22% Similarity=0.368 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHhhhhHHHHH
Q 030034 115 PVRAEVVQLRAEVQKLNSSRQELTTQ---------------IKGLTKDVNRLEAENKQLIAMR 162 (184)
Q Consensus 115 ~~k~El~Q~r~e~q~L~~~RQELt~q---------------vq~ltqeL~r~~~d~qqip~l~ 162 (184)
-+|.||.++-.||..| ||=|+++ ...|+|++.|..-|+|---+-+
T Consensus 48 elr~EL~kvEeEI~TL---rqVLaAKerH~~ELKRKLGlt~~~EL~qnisksw~d~q~st~y~ 107 (208)
T KOG4010|consen 48 ELRTELAKVEEEIVTL---RQVLAAKERHAAELKRKLGLTVLKELKQNISKSWKDVQASTAYV 107 (208)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhhhhhHHHHH
Confidence 5677777777777554 4444443 4678889988888877655544
No 315
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=34.89 E-value=4.7e+02 Score=26.03 Aligned_cols=74 Identities=19% Similarity=0.334 Sum_probs=43.2
Q ss_pred hhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 030034 102 RGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA 175 (184)
Q Consensus 102 k~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~ 175 (184)
..-.+|.|=...+.+-.=+..++.=+.|-...=.+|-.....+..||+.+......+-.|.++++.+++++..+
T Consensus 288 ~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~ 361 (557)
T COG0497 288 YLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEA 361 (557)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33344444333444444445555555555555566666666667777777666666677777777777666543
No 316
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=34.60 E-value=7.5e+02 Score=28.30 Aligned_cols=141 Identities=11% Similarity=0.189 Sum_probs=70.3
Q ss_pred CChhhhHHHHHHHHHHHHHHHHhhhhhHHhhHH-----------HHHHH-------HhhHHHHHHHhhhhhhhhhhhHHh
Q 030034 34 FHPMTLEEEIEIQRREMHRIISENRHAIDDNTH-----------LQREL-------TASKDEIHRLGQIIPKLRADKEAH 95 (184)
Q Consensus 34 p~p~~LEe~La~Q~~EiqrLl~dNqRLAathva-----------LrqeL-------~aaq~El~~l~~~i~~i~ae~e~q 95 (184)
..+.-++..|...-.+|.+|.+++--+-..|-- |.|.+ .-.+-|+--++.+...+.+++...
T Consensus 20 ~V~~d~~~~l~~k~~~~~~lk~e~~k~~v~~eq~~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l 99 (1822)
T KOG4674|consen 20 LVDVDVFKKLPKKSKDFESLKDEDGKTEVNHEQQLSELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNL 99 (1822)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 344456777777777777777776555544433 22222 223444444455555555555554
Q ss_pred HHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 030034 96 TRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA 175 (184)
Q Consensus 96 ~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~ 175 (184)
...+.-.....+ +++.+-..++.+-..|.-.=..+.+++..+..+..++...++..-.-.-|++.-.+|++-.
T Consensus 100 ~~~~~~~~~~~~-------~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~ 172 (1822)
T KOG4674|consen 100 SWEIDALKLENS-------QLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSE 172 (1822)
T ss_pred HHHHHHhhhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443333333 2332222222222233333333444555555555566555566666666666666666655
Q ss_pred hhhhcc
Q 030034 176 RFEIRY 181 (184)
Q Consensus 176 Raa~Ey 181 (184)
=..+.|
T Consensus 173 ~vs~q~ 178 (1822)
T KOG4674|consen 173 DVSSQL 178 (1822)
T ss_pred HHHHHH
Confidence 444443
No 317
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.58 E-value=3.8e+02 Score=25.38 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHH
Q 030034 46 QRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEA 94 (184)
Q Consensus 46 Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~ 94 (184)
...||.++.+.=--|.-||--|+-...-...++.+|.+...++++.-|+
T Consensus 223 ~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDI 271 (365)
T KOG2391|consen 223 REEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDI 271 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3444555554444444444444443333333344444444444444443
No 318
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.96 E-value=4.3e+02 Score=25.35 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 030034 120 VVQLRAEVQKLNSSRQELTTQIK 142 (184)
Q Consensus 120 l~Q~r~e~q~L~~~RQELt~qvq 142 (184)
-..+..+++.|.+.|.+++.++.
T Consensus 38 ~r~~~~~~e~l~~~rn~~sk~ig 60 (429)
T COG0172 38 RRKLLRELEELQAERNELSKEIG 60 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666666664
No 319
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=33.68 E-value=2.3e+02 Score=22.14 Aligned_cols=46 Identities=22% Similarity=0.347 Sum_probs=36.2
Q ss_pred hhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 103 GLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRL 151 (184)
Q Consensus 103 ~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~ 151 (184)
...|..+|+.-| +.|..+..|+..|.=--+-|+..|..|..||...
T Consensus 28 ~~~L~e~Lk~ke---~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 28 NAELKEQLKEKE---QALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555665544 3567788999999999999999999999999844
No 320
>PRK10698 phage shock protein PspA; Provisional
Probab=33.57 E-value=3.1e+02 Score=23.47 Aligned_cols=86 Identities=20% Similarity=0.261 Sum_probs=60.5
Q ss_pred hhHHhhHHHHHHHHhhHHHHHHHh-hhhhhhhhhhHHhHHH-------HHHhhhhhhhhhhcc----hhHHHHHHHHHHH
Q 030034 59 HAIDDNTHLQRELTASKDEIHRLG-QIIPKLRADKEAHTRE-------LFDRGLKLEVELRAS----EPVRAEVVQLRAE 126 (184)
Q Consensus 59 RLAathvaLrqeL~aaq~El~~l~-~~i~~i~ae~e~q~Re-------l~ek~~KmEaelRa~----e~~k~El~Q~r~e 126 (184)
+..++.-.+.+++..++..+.... .+...+..-+|-=-|+ ..+++..|+.++-.. +.++..+.++...
T Consensus 49 ~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~k 128 (222)
T PRK10698 49 RALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENK 128 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667778888887777766 5556677777777777 666677777666543 4557777888888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030034 127 VQKLNSSRQELTTQIKGL 144 (184)
Q Consensus 127 ~q~L~~~RQELt~qvq~l 144 (184)
++++-+-+..|.++.+..
T Consensus 129 i~eak~k~~~L~aR~~~A 146 (222)
T PRK10698 129 LSETRARQQALMLRHQAA 146 (222)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888887766554
No 321
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=33.50 E-value=2.1e+02 Score=25.79 Aligned_cols=34 Identities=21% Similarity=0.394 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRL 151 (184)
Q Consensus 118 ~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~ 151 (184)
+.|..+..+.+......+.|..+++....-|.++
T Consensus 249 ~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA 282 (344)
T PF12777_consen 249 EKLAALQKEYEEAQKEKQELEEEIEETERKLERA 282 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH
Confidence 3333444444444444444444444444444443
No 322
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=33.40 E-value=2.9e+02 Score=23.17 Aligned_cols=54 Identities=26% Similarity=0.348 Sum_probs=36.8
Q ss_pred HHHHHHhhhhhhhhhhcchh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 96 TRELFDRGLKLEVELRASEP-------VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (184)
Q Consensus 96 ~Rel~ek~~KmEaelRa~e~-------~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~ 149 (184)
+-+|-+-..+||.|-+-.+. +|.-|.|++...+.|...=+-||+++..+..+|.
T Consensus 59 s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 59 SPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred cccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677888888888888 6667777766666666655555555555555554
No 323
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=33.07 E-value=50 Score=27.24 Aligned_cols=54 Identities=13% Similarity=0.231 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhHHHHHHHHHHHHHHH
Q 030034 119 EVVQLRAEVQKLNSSRQELTTQIKGLTK---DVNRLEAENKQLIAMRADIDGIRSEL 172 (184)
Q Consensus 119 El~Q~r~e~q~L~~~RQELt~qvq~ltq---eL~r~~~d~qqip~l~aEid~lrqEl 172 (184)
++.+..++...+.....|..+.+.+|-. ++++..-.-..||.-|+-++.|-.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl~~~~ 174 (181)
T PF09311_consen 118 ELPSPKSEMAQLQSQGYEIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDLEKES 174 (181)
T ss_dssp --------------S-TTS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3344445555555555555555444433 33333333344577777777665553
No 324
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=33.02 E-value=1.9e+02 Score=20.92 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=13.3
Q ss_pred hhhHHhhHHHHHHHHhhHHHHHHHh
Q 030034 58 RHAIDDNTHLQRELTASKDEIHRLG 82 (184)
Q Consensus 58 qRLAathvaLrqeL~aaq~El~~l~ 82 (184)
+.+.+|...|+.|+...+.+-..+.
T Consensus 14 ~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 14 QQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3455566666666655555544333
No 325
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=32.95 E-value=3.2e+02 Score=23.50 Aligned_cols=17 Identities=6% Similarity=0.157 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q 030034 39 LEEEIEIQRREMHRIIS 55 (184)
Q Consensus 39 LEe~La~Q~~EiqrLl~ 55 (184)
++..+......+..+..
T Consensus 78 ~~~~l~~a~a~l~~~~~ 94 (334)
T TIGR00998 78 AELALAKAEANLAALVR 94 (334)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445544444444433
No 326
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=32.95 E-value=3.4e+02 Score=23.79 Aligned_cols=15 Identities=7% Similarity=0.388 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHh
Q 030034 161 MRADIDGIRSELVEA 175 (184)
Q Consensus 161 l~aEid~lrqElqr~ 175 (184)
...+++.|++||+.+
T Consensus 282 ~~~~~~~l~~ei~~L 296 (297)
T PF02841_consen 282 FQEEAEKLQKEIQDL 296 (297)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 344555556655543
No 327
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=32.69 E-value=1.7e+02 Score=22.40 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 030034 130 LNSSRQELTTQIKGLTKDVNRLEAE 154 (184)
Q Consensus 130 L~~~RQELt~qvq~ltqeL~r~~~d 154 (184)
|.-.++-|+.++..+.++++.++.+
T Consensus 71 Ll~~q~~L~~~~~~l~~~~~~~~~~ 95 (118)
T PF13815_consen 71 LLHCQEYLSSQLEQLEERLQELQQE 95 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444333
No 328
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=32.55 E-value=2.8e+02 Score=22.74 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=42.4
Q ss_pred hHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 74 SKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRL 151 (184)
Q Consensus 74 aq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~ 151 (184)
|...++.-.....+.+...-...--+|+++..=-..++.+|.++.++.-++.-...|...-.+...++..-.+-|..+
T Consensus 30 a~~~~~~a~~~l~dyr~wr~~ee~rly~~~~~~~v~~kele~~~~qv~~Lr~~e~~le~~~~~a~~~~~~e~~~l~~a 107 (152)
T PF07321_consen 30 ARAALQQAEQELADYRQWRQREEERLYAEIQGKVVSLKELEKWQQQVASLREREAELEQQLAEAEEQLEQERQALEEA 107 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444555555555555666666666666666666666666666665555555555554444433333333
No 329
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=32.53 E-value=5.5e+02 Score=26.12 Aligned_cols=32 Identities=28% Similarity=0.329 Sum_probs=13.0
Q ss_pred HhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhH
Q 030034 62 DDNTHLQRELTASKDEIHRLGQIIPKLRADKE 93 (184)
Q Consensus 62 athvaLrqeL~aaq~El~~l~~~i~~i~ae~e 93 (184)
..-...++++...+.++..+..-+...+.+=+
T Consensus 523 ~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~ 554 (782)
T PRK00409 523 ASLEELERELEQKAEEAEALLKEAEKLKEELE 554 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333333333333
No 330
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=32.37 E-value=1.4e+02 Score=22.85 Aligned_cols=32 Identities=9% Similarity=0.269 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHhhHHHHH
Q 030034 38 TLEEEIEIQRREMHRIISENRHAIDDNTHLQR 69 (184)
Q Consensus 38 ~LEe~La~Q~~EiqrLl~dNqRLAathvaLrq 69 (184)
-+..+++....|+..|-.+|..|......|+.
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45556666666666666666655555555554
No 331
>PF15294 Leu_zip: Leucine zipper
Probab=32.30 E-value=3.9e+02 Score=24.29 Aligned_cols=84 Identities=24% Similarity=0.362 Sum_probs=0.0
Q ss_pred hHHhHHHHHHhhhhhhhhhhcchh----------------------HHHHHHHHHHHHHHHHH--------------HHH
Q 030034 92 KEAHTRELFDRGLKLEVELRASEP----------------------VRAEVVQLRAEVQKLNS--------------SRQ 135 (184)
Q Consensus 92 ~e~q~Rel~ek~~KmEaelRa~e~----------------------~k~El~Q~r~e~q~L~~--------------~RQ 135 (184)
.+++=|+|++.++++|..-=+... +..|+.-+..|.++|-. .+.
T Consensus 84 selEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~ 163 (278)
T PF15294_consen 84 SELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKS 163 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH------hhhhHHHHHHHHHHHHHHHHHh
Q 030034 136 ELTTQIKGLTKDVNRLEA------ENKQLIAMRADIDGIRSELVEA 175 (184)
Q Consensus 136 ELt~qvq~ltqeL~r~~~------d~qqip~l~aEid~lrqElqr~ 175 (184)
.|..+++.+..+.....+ ..|+++.|..-+-.+.-|+..+
T Consensus 164 kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 164 KLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
No 332
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=32.23 E-value=2.6e+02 Score=22.58 Aligned_cols=41 Identities=27% Similarity=0.409 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhh
Q 030034 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKG---LTKDVNRLEAEN 155 (184)
Q Consensus 115 ~~k~El~Q~r~e~q~L~~~RQELt~qvq~---ltqeL~r~~~d~ 155 (184)
..-+-++++..|+.+....||.|..|++. +..||..+-.|+
T Consensus 9 e~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~ 52 (120)
T KOG3478|consen 9 EEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDS 52 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccc
Confidence 33456788888999999999999999875 456666666555
No 333
>PRK13824 replication initiation protein RepC; Provisional
Probab=31.81 E-value=3.5e+02 Score=25.42 Aligned_cols=78 Identities=18% Similarity=0.293 Sum_probs=47.2
Q ss_pred hHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 030034 95 HTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQE---------LTTQIKGLTKDVNRLEAENKQLIAMRADI 165 (184)
Q Consensus 95 q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQE---------Lt~qvq~ltqeL~r~~~d~qqip~l~aEi 165 (184)
..-||.+-+.+..+|-+....+|.++--+|-||.+|...=.+ +...++.+..-|-|- .....+-.+..++
T Consensus 147 R~~El~~~A~~~~ae~~~~r~lr~~it~~rRdi~~li~~a~~~~~~~~w~~~~~~~~~i~~~l~R~-~~~~~l~~l~~~l 225 (404)
T PRK13824 147 RAEEFEALAEQVAAERKALRRLRERLTLCRRDIAKLIEAAIEEGVPGDWEGVEQRFRAIVARLPRR-ATLAELEPILDEL 225 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHH
Confidence 345666667777788888888899999999999888865222 222222222222222 2344455666666
Q ss_pred HHHHHHHH
Q 030034 166 DGIRSELV 173 (184)
Q Consensus 166 d~lrqElq 173 (184)
..++.++.
T Consensus 226 ~~l~~~~~ 233 (404)
T PRK13824 226 EALREEVV 233 (404)
T ss_pred HHHHHHHH
Confidence 66666553
No 334
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=31.81 E-value=5.1e+02 Score=25.52 Aligned_cols=34 Identities=35% Similarity=0.499 Sum_probs=22.9
Q ss_pred hhhHHhHHHHHHhhhhhhhh--hhcc--hhHHHHHHHH
Q 030034 90 ADKEAHTRELFDRGLKLEVE--LRAS--EPVRAEVVQL 123 (184)
Q Consensus 90 ae~e~q~Rel~ek~~KmEae--lRa~--e~~k~El~Q~ 123 (184)
.|.|-.+-.|+.|+.|+|++ +... +-+|.|..|+
T Consensus 154 qeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~l 191 (552)
T KOG2129|consen 154 QEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQL 191 (552)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHH
Confidence 46677788999999999976 3333 4455554444
No 335
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=31.50 E-value=2.8e+02 Score=27.50 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=18.9
Q ss_pred HHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhh
Q 030034 67 LQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLE 107 (184)
Q Consensus 67 LrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmE 107 (184)
++|.+...++||.++.........|....++.+-+....++
T Consensus 344 ~~q~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 384 (656)
T PRK06975 344 LNRKVDRLDQELVQRQQANDAQTAELRVKTEQAQASVHQLD 384 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555444444444333433333333333
No 336
>PLN02939 transferase, transferring glycosyl groups
Probab=31.45 E-value=6.7e+02 Score=26.75 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=25.4
Q ss_pred hhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 030034 91 DKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQE-LTTQIKGLT 145 (184)
Q Consensus 91 e~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQE-Lt~qvq~lt 145 (184)
|.|-.+..|-....-|++-|+..|. -+.-+..|+-+|.....| +..+|..|.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (977)
T PLN02939 254 ETEERVFKLEKERSLLDASLRELES---KFIVAQEDVSKLSPLQYDCWWEKVENLQ 306 (977)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhhhhccchhHHHHHHHHHHHH
Confidence 4455555554445555555554432 234455555555555544 344444443
No 337
>PHA01750 hypothetical protein
Probab=31.43 E-value=1.3e+02 Score=22.22 Aligned_cols=35 Identities=26% Similarity=0.519 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDV 148 (184)
Q Consensus 114 e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL 148 (184)
|-++.||.-++.+++.+.---.+|..||..+.+.+
T Consensus 38 eIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 38 EIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 46788999999999988855556777776665544
No 338
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=31.33 E-value=1.8e+02 Score=29.36 Aligned_cols=42 Identities=21% Similarity=0.419 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 030034 138 TTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 138 t~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (184)
..++..+.++++....+..+.-..-.+||.+++-++.++.+.
T Consensus 83 ~~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L 124 (766)
T PF10191_consen 83 QEQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETL 124 (766)
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666667788888888888887764
No 339
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=31.28 E-value=1.6e+02 Score=19.49 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLT 145 (184)
Q Consensus 117 k~El~Q~r~e~q~L~~~RQELt~qvq~lt 145 (184)
|.....+..+++.|...-..|..++..|.
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444443
No 340
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=31.21 E-value=3e+02 Score=22.70 Aligned_cols=33 Identities=15% Similarity=0.046 Sum_probs=16.0
Q ss_pred CCCChhhhHH------HHHHHHHHHHHHHHhhhhhHHhh
Q 030034 32 MHFHPMTLEE------EIEIQRREMHRIISENRHAIDDN 64 (184)
Q Consensus 32 ~~p~p~~LEe------~La~Q~~EiqrLl~dNqRLAath 64 (184)
+|-...+||. +-.....|+..|-.||.+|-..-
T Consensus 28 mP~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~ 66 (158)
T PF09744_consen 28 MPKVVRVLELLESLASRNQEHEVELELLREDNEQLETQY 66 (158)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 4445566663 11123445555555555554433
No 341
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=31.17 E-value=2.5e+02 Score=21.69 Aligned_cols=7 Identities=0% Similarity=0.207 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 030034 142 KGLTKDV 148 (184)
Q Consensus 142 q~ltqeL 148 (184)
+...++|
T Consensus 86 ~~~~~~l 92 (158)
T PF03938_consen 86 QQKEQEL 92 (158)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 342
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=31.13 E-value=1.3e+02 Score=23.14 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 120 VVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (184)
Q Consensus 120 l~Q~r~e~q~L~~~RQELt~qvq~ltqe 147 (184)
+.++..+++.+....+.|...++....+
T Consensus 82 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 109 (118)
T PF13815_consen 82 LEQLEERLQELQQEIEKLKQKLKKQKEE 109 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 343
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=31.10 E-value=3.2e+02 Score=23.00 Aligned_cols=123 Identities=24% Similarity=0.323 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHH
Q 030034 44 EIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQL 123 (184)
Q Consensus 44 a~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~ 123 (184)
..-..+|..+..+|.+|.. -|..++.|+..|...+.....++- .+..+-.+...++.+|+ .++-|-..+
T Consensus 44 ~~~~k~m~ei~~eN~~L~e-------pL~~a~~e~~eL~k~L~~y~kdK~-~L~~~k~rl~~~ek~l~---~Lk~e~evL 112 (201)
T PF13851_consen 44 ERNEKLMAEISQENKRLSE-------PLKKAEEEVEELRKQLKNYEKDKQ-SLQNLKARLKELEKELK---DLKWEHEVL 112 (201)
T ss_pred HHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 3344455666666666554 455555555555555555443332 33444555556666665 566777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHhhh
Q 030034 124 RAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN-----KQLIAMRADIDGIRSELVEARF 177 (184)
Q Consensus 124 r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~-----qqip~l~aEid~lrqElqr~Ra 177 (184)
..-..+|...|.+|..+....-.|++.-.+-. +++-+|...++.---+|.-.-+
T Consensus 113 ~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 113 EQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888899999999988888888876543322 5666777777766666664433
No 344
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=30.94 E-value=1.4e+02 Score=21.65 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=25.6
Q ss_pred hhHHHHHHH-HHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHh
Q 030034 38 TLEEEIEIQ-RREMHRIISENRHAIDDNTHLQRELTASKDEIHRLG 82 (184)
Q Consensus 38 ~LEe~La~Q-~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~ 82 (184)
.||++|... ..-++.++.+|=-|-.+...|++||..-+.-|..+.
T Consensus 25 fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~ 70 (75)
T PF07989_consen 25 FLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAE 70 (75)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777632 344566666666555555555555555555554443
No 345
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=30.87 E-value=3.4e+02 Score=23.15 Aligned_cols=135 Identities=18% Similarity=0.235 Sum_probs=69.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhHHhhHH----HH-------HHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhh
Q 030034 36 PMTLEEEIEIQRREMHRIISENRHAIDDNTH----LQ-------RELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGL 104 (184)
Q Consensus 36 p~~LEe~La~Q~~EiqrLl~dNqRLAathva----Lr-------qeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~ 104 (184)
+..|.+.+..+..+|+ .+.+.|++.+.. |+ .+++..+++|+.|. .|..++..-|.+|..|=+...
T Consensus 20 i~~L~~q~~~~~~~i~---~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~-~~~~~k~~qe~eI~~Le~e~~ 95 (206)
T PF14988_consen 20 IEKLWKQYIQQLEEIQ---RERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALK-EFRRLKEQQEREIQTLEEELE 95 (206)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666665 455566655544 22 23344566666663 345566666666666666666
Q ss_pred hhhhhhhcchh------------HHHHH---------HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 105 KLEVELRASEP------------VRAEV---------VQLRAE------------VQKLNSSRQELTTQIKGLTKDVNRL 151 (184)
Q Consensus 105 KmEaelRa~e~------------~k~El---------~Q~r~e------------~q~L~~~RQELt~qvq~ltqeL~r~ 151 (184)
+++++-.+... +-.|+ ..++.+ ++.+....+.+-.+=+.|.++|...
T Consensus 96 ~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~EN~~L~k~L~~l 175 (206)
T PF14988_consen 96 KMRAEHAEKLQEAESQFLQEKARLEKEASELKILQLGERAHKELKKKAQALELAAKKSLDEFTRSIKRENQQLRKELLQL 175 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555433211 11111 011112 3334444555555555556666666
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHH
Q 030034 152 EAENKQLIAMRADIDGIRSELVE 174 (184)
Q Consensus 152 ~~d~qqip~l~aEid~lrqElqr 174 (184)
--+++.+-+.+..++.=++.|++
T Consensus 176 ~~e~~~L~~~~~~Le~qk~~L~~ 198 (206)
T PF14988_consen 176 IQEAQKLEARKSQLEKQKQQLQQ 198 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666555555555543
No 346
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=30.60 E-value=1.3e+02 Score=24.70 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 123 LRAEVQKLNSSRQELTTQIKGLTKDV 148 (184)
Q Consensus 123 ~r~e~q~L~~~RQELt~qvq~ltqeL 148 (184)
..+|||.|.+.--.+..+|-++...|
T Consensus 78 t~aEvqaL~S~G~sl~~kVtSLea~l 103 (138)
T PF03954_consen 78 TLAEVQALSSQGGSLQDKVTSLEAKL 103 (138)
T ss_pred HHHHHHHHHhccccHHhHcccHHHHH
Confidence 33444444443333444443333333
No 347
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=30.40 E-value=5e+02 Score=24.92 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=22.4
Q ss_pred HHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030034 96 TRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQEL 137 (184)
Q Consensus 96 ~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQEL 137 (184)
+-++++...+++.+|...+..-.++..+..++.++...-.++
T Consensus 324 ~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~ 365 (563)
T TIGR00634 324 VEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKA 365 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666665555555555555544444433333
No 348
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=30.29 E-value=3.7e+02 Score=23.36 Aligned_cols=76 Identities=24% Similarity=0.278 Sum_probs=51.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHh-hhhhhhhhhhHHhHHHHHHhhhhhhhhhhc
Q 030034 37 MTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLG-QIIPKLRADKEAHTRELFDRGLKLEVELRA 112 (184)
Q Consensus 37 ~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~-~~i~~i~ae~e~q~Rel~ek~~KmEaelRa 112 (184)
.+|++.|-.-..++..+-..=-.+.+.+..|..++..++.....+- .+...+.+-.|.=.|+++++...+|-.+.+
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~ 103 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKA 103 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666555555566777777777777777777665 455666777777777777777777766543
No 349
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=30.28 E-value=2e+02 Score=20.23 Aligned_cols=88 Identities=23% Similarity=0.359 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhH-----HHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcch
Q 030034 40 EEEIEIQRREMHRIISENRHAIDDNTHLQRELTASK-----DEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASE 114 (184)
Q Consensus 40 Ee~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq-----~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e 114 (184)
+..|+....++......-..|-.....+...+.... .++...+.++..+...-...-..+ ..++.++ +
T Consensus 4 ~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~----~~~~~~~---~ 76 (123)
T PF02050_consen 4 EQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQEL----ERLEQEV---E 76 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH---H
Confidence 444555555555555555555555555555555555 666666666666555444333333 2222222 3
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 030034 115 PVRAEVVQLRAEVQKLNSSR 134 (184)
Q Consensus 115 ~~k~El~Q~r~e~q~L~~~R 134 (184)
..+..+..++.+.+++...+
T Consensus 77 ~~r~~l~~a~~~~k~~e~L~ 96 (123)
T PF02050_consen 77 QAREELQEARRERKKLEKLK 96 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777666554
No 350
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=30.20 E-value=2.4e+02 Score=21.23 Aligned_cols=41 Identities=27% Similarity=0.447 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030034 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ 157 (184)
Q Consensus 117 k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qq 157 (184)
++-+.|+-++||.|++.=-.|..+|..+..|.+-++.|+-+
T Consensus 24 ~aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaar 64 (78)
T COG4238 24 NAKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAAR 64 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 45567888888888888888888888888887777766654
No 351
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=29.98 E-value=3e+02 Score=22.19 Aligned_cols=120 Identities=24% Similarity=0.302 Sum_probs=51.9
Q ss_pred HHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHH
Q 030034 48 REMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEV 127 (184)
Q Consensus 48 ~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~ 127 (184)
.++..|=.+|+-|....-.=-.||...+.=.....+.++.++---- .+......|..+|... ..++..++.++
T Consensus 42 iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~----~~~~~~~~l~~~l~~~---~~~~~~~r~~l 114 (177)
T PF13870_consen 42 IDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLH----FLSEELERLKQELKDR---EEELAKLREEL 114 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 4556666677766665544444444444333333333333322111 2333333344443322 22333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 030034 128 QKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 128 q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (184)
..+...|.-+..+...+.. ++..=..|.|..+.+....++...|..|
T Consensus 115 ~~~k~~r~k~~~~~~~l~~-----~~~~~~~P~ll~Dy~~~~~~~~~l~~~i 161 (177)
T PF13870_consen 115 YRVKKERDKLRKQNKKLRQ-----QGGLLGVPALLRDYDKTKEEVEELRKEI 161 (177)
T ss_pred HHHHHHHHHHHHHHHHHHH-----hcCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433333333322 2333345666655555555555444443
No 352
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=29.93 E-value=4e+02 Score=24.75 Aligned_cols=80 Identities=19% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 030034 98 ELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQ----IKGLTKDVNRLEAENKQLIAMRADIDGIRSELV 173 (184)
Q Consensus 98 el~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~q----vq~ltqeL~r~~~d~qqip~l~aEid~lrqElq 173 (184)
|+.+--.-++.|.+..+.-.....|--.|+.++...+.--.+. +..+.+.|++.+..... .-.+.++.|+.++.
T Consensus 1 e~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~--e~~~~i~~L~~~Ik 78 (330)
T PF07851_consen 1 ECEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSA--EERELIEKLEEDIK 78 (330)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCh--hHHHHHHHHHHHHH
Q ss_pred Hhhhhh
Q 030034 174 EARFEI 179 (184)
Q Consensus 174 r~Raa~ 179 (184)
+++..|
T Consensus 79 ~r~~~l 84 (330)
T PF07851_consen 79 ERRCQL 84 (330)
T ss_pred HHHhhH
No 353
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=29.90 E-value=1.7e+02 Score=27.23 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=44.3
Q ss_pred CChhhhHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhh
Q 030034 34 FHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQ 83 (184)
Q Consensus 34 p~p~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~ 83 (184)
.....+++++..-..+++.|-..|..+......+++++...+.|+..++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 15 HTERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34467888888878899999999999999999999999999999999864
No 354
>PRK07075 isochorismate-pyruvate lyase; Reviewed
Probab=29.83 E-value=2.5e+02 Score=21.22 Aligned_cols=41 Identities=7% Similarity=0.116 Sum_probs=34.6
Q ss_pred hhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 107 EVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (184)
Q Consensus 107 EaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqe 147 (184)
-++.-..+.+|+++..+-.++=+|.+.|-.++.+|-.+.+.
T Consensus 4 ~~~~~~L~~lR~~ID~ID~~iv~LL~eR~~~~~~ia~~K~~ 44 (101)
T PRK07075 4 PEACTGLDDIREAIDRLDRDIIAALGRRMQYVKAASRFKPS 44 (101)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 34555677899999999999999999999999999877763
No 355
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=29.82 E-value=2.1e+02 Score=20.47 Aligned_cols=50 Identities=14% Similarity=0.182 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 030034 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRAD 164 (184)
Q Consensus 115 ~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aE 164 (184)
.+..++...-.|+..+...=.+++..|+.-.+.+...-...+.++..-.+
T Consensus 37 ~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~ 86 (90)
T PF06103_consen 37 TLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSE 86 (90)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555555555555555555555555555544333
No 356
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=29.65 E-value=5.7e+02 Score=25.41 Aligned_cols=21 Identities=10% Similarity=0.086 Sum_probs=8.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q 030034 154 ENKQLIAMRADIDGIRSELVE 174 (184)
Q Consensus 154 d~qqip~l~aEid~lrqElqr 174 (184)
+.-.+-.+++.+..|++++..
T Consensus 337 ~hP~v~~l~~~~~~L~~~~~~ 357 (726)
T PRK09841 337 DHPTYRALLEKRQTLEQERKR 357 (726)
T ss_pred cCchHHHHHHHHHHHHHHHHH
Confidence 333333444444444444333
No 357
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=29.53 E-value=3.5e+02 Score=28.03 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 030034 137 LTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSEL 172 (184)
Q Consensus 137 Lt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqEl 172 (184)
|+.++..|.+|+++--++.-.-|.|+.-+|-|+.+.
T Consensus 509 L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~ 544 (762)
T PLN03229 509 LMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFS 544 (762)
T ss_pred HHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHH
Confidence 667788888888888888777788888887777766
No 358
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=29.53 E-value=3.4e+02 Score=22.75 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 030034 160 AMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 160 ~l~aEid~lrqElqr~Raa~ 179 (184)
.+++.++.++.++..++..+
T Consensus 113 ~~~~~l~~~~~~l~~~~~~~ 132 (322)
T TIGR01730 113 AAQADLEAAKASLASAQLNL 132 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34445555555555554433
No 359
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=29.45 E-value=2.6e+02 Score=21.88 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030034 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ 157 (184)
Q Consensus 116 ~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qq 157 (184)
+..++.+....+..+...-+.|..==...|+||+.+++++..
T Consensus 12 ~~~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~ 53 (125)
T PF03245_consen 12 AQAALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDR 53 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 334444444444444444444444444566666666555443
No 360
>PF07324 DGCR6: DiGeorge syndrome critical region 6 (DGCR6) protein; InterPro: IPR010849 This family contains DiGeorge syndrome critical region 6 (DGCR6) proteins (approximately 200 residues long) of a number of vertebrates. DGCR6 is a candidate for involvement in the DiGeorge syndrome pathology by playing a role in neural crest cell migration into the third and fourth pharyngeal pouches, the structures from which derive the organs affected in DiGeorge syndrome []. Also found in this family is the Drosophila melanogaster gonadal protein gdl.
Probab=29.45 E-value=3.7e+02 Score=23.21 Aligned_cols=90 Identities=20% Similarity=0.250 Sum_probs=62.7
Q ss_pred CChhhhHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHH--HhhhhhhhhhhhHHhHHHHHHhhhhhhhhhh
Q 030034 34 FHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHR--LGQIIPKLRADKEAHTRELFDRGLKLEVELR 111 (184)
Q Consensus 34 p~p~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~--l~~~i~~i~ae~e~q~Rel~ek~~KmEaelR 111 (184)
...++..+=...||..=..|+..-.+|-.+|.+.+++|...-.+-.- --+.++.+++..+.+.+++.++ +..|++
T Consensus 60 tIFeiV~~L~eiQ~~~Ek~L~~qR~~L~~~h~~e~~~l~~k~~~~~~~~~~h~l~~lk~~~~~e~~~l~~r---~~eEl~ 136 (196)
T PF07324_consen 60 TIFEIVKGLLEIQHLTEKNLLQQRLKLLNEHKIEKQELRQKHKEEQQACKPHNLPLLKTKHEKELEELEKR---IKEELR 136 (196)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHhhcchhhHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 34466667777888888899999999999999999999776555444 4467788899999888886543 233444
Q ss_pred cchh-HHHHHHHHHHH
Q 030034 112 ASEP-VRAEVVQLRAE 126 (184)
Q Consensus 112 a~e~-~k~El~Q~r~e 126 (184)
..+- +=.|+.|.-+|
T Consensus 137 ~~D~kivleLDqkV~d 152 (196)
T PF07324_consen 137 QMDKKIVLELDQKVAD 152 (196)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4332 33444444443
No 361
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=29.27 E-value=2e+02 Score=20.04 Aligned_cols=51 Identities=27% Similarity=0.462 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhh----hHHhhHHHHHHHHhhHHHHHHHhhhhhhh
Q 030034 38 TLEEEIEIQRREMHRIISENRH----AIDDNTHLQRELTASKDEIHRLGQIIPKL 88 (184)
Q Consensus 38 ~LEe~La~Q~~EiqrLl~dNqR----LAathvaLrqeL~aaq~El~~l~~~i~~i 88 (184)
-|...+..-..|++.++.+|-+ -+.+.+.++.++...+.-|..+...+..+
T Consensus 30 ~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l 84 (87)
T PF08700_consen 30 KLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSL 84 (87)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555666677788888888875 34556666666666666666665555544
No 362
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=29.02 E-value=1.9e+02 Score=19.61 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=12.9
Q ss_pred HHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHH
Q 030034 50 MHRIISENRHAIDDNTHLQRELTASKDEIHRL 81 (184)
Q Consensus 50 iqrLl~dNqRLAathvaLrqeL~aaq~El~~l 81 (184)
|..|=.....|-..+..|+.++...+.++..|
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444333
No 363
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=28.86 E-value=19 Score=36.70 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhh
Q 030034 42 EIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKL 88 (184)
Q Consensus 42 ~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i 88 (184)
+|..-..++..+-.-+..|--+.-.|..|+..+.-+|...+..+..+
T Consensus 329 ~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~L 375 (859)
T PF01576_consen 329 KLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAEL 375 (859)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444445555555666667777777777777776655544
No 364
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=28.79 E-value=1.4e+02 Score=26.19 Aligned_cols=45 Identities=27% Similarity=0.389 Sum_probs=35.4
Q ss_pred hhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhh
Q 030034 59 HAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLE 107 (184)
Q Consensus 59 RLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmE 107 (184)
||=.-...|-+|+...++++..|..-+.++++|+- .||||+.=|-
T Consensus 90 RFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~----kLYEKiRylq 134 (248)
T PF08172_consen 90 RFRQRNAELEEELRKQQQTISSLRREVESLRADNV----KLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHh
Confidence 55566667788888888888888888889999987 4899887653
No 365
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=28.70 E-value=2.9e+02 Score=21.66 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 030034 136 ELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 136 ELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (184)
.|..++..+.+++..++.. |-.|..|--.|+-|-+++|.-+
T Consensus 12 ~le~~l~~l~~el~~LK~~---~~el~EEN~~L~iEN~~Lr~~l 52 (110)
T PRK13169 12 DLEQNLGVLLKELGALKKQ---LAELLEENTALRLENDKLRERL 52 (110)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444432 3334445555555555555444
No 366
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=28.58 E-value=1.9e+02 Score=23.08 Aligned_cols=29 Identities=31% Similarity=0.404 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKG 143 (184)
Q Consensus 115 ~~k~El~Q~r~e~q~L~~~RQELt~qvq~ 143 (184)
..=+.++|++..++++...++-+-++++.
T Consensus 10 ~~l~q~QqLq~ql~~~~~qk~~le~qL~E 38 (119)
T COG1382 10 AQLAQLQQLQQQLQKVILQKQQLEAQLKE 38 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777777766666544
No 367
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=28.45 E-value=2.1e+02 Score=22.03 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=17.3
Q ss_pred hhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhh
Q 030034 56 ENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRAD 91 (184)
Q Consensus 56 dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae 91 (184)
++-.+..+..++++++.....+-..+.+.|.+++.+
T Consensus 51 ~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 51 DVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333444444445555555555555555555555544
No 368
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=28.30 E-value=2.5e+02 Score=21.26 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (184)
Q Consensus 115 ~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~ 152 (184)
.|..++.++.+.+..+...=+.+.+.++....|=+|++
T Consensus 28 qLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN 65 (85)
T PRK09973 28 QLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRAN 65 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555544444
No 369
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=28.28 E-value=4.7e+02 Score=25.72 Aligned_cols=41 Identities=24% Similarity=0.468 Sum_probs=31.9
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 110 LRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR 150 (184)
Q Consensus 110 lRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r 150 (184)
|.+-.++..-+..+.+.+.+|...+.+++.+++...++-..
T Consensus 37 L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ 77 (618)
T PF06419_consen 37 LKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSD 77 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566888889999999999999999988887776554333
No 370
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=27.88 E-value=1.7e+02 Score=28.42 Aligned_cols=32 Identities=25% Similarity=0.506 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (184)
Q Consensus 118 ~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~ 149 (184)
.++..+-.++.+|...+++|..+++.+.+.+.
T Consensus 93 ~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~ 124 (646)
T PRK05771 93 EELEKIEKEIKELEEEISELENEIKELEQEIE 124 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554444443
No 371
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=27.83 E-value=2.5e+02 Score=28.41 Aligned_cols=64 Identities=23% Similarity=0.351 Sum_probs=45.5
Q ss_pred hhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 82 GQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRL 151 (184)
Q Consensus 82 ~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~ 151 (184)
+..+..++.+++.+.-.+-++--.+. +.-..|+.+++.++|+|.-.|+=|.-++.+++.--.|.
T Consensus 3 RdkL~~Lq~ek~~E~~~l~~~~~~lk------~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s~~~~r~ 66 (654)
T PF09798_consen 3 RDKLELLQQEKQKERQALKSSVEELK------ESHEEELNKLKSEVQKLEDEKKFLNNELRSLSSSKRRK 66 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 34455566666666555554443333 24478999999999999999999999999988765543
No 372
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=27.65 E-value=4e+02 Score=22.92 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 124 RAEVQKLNSSRQELTTQIKGLTKDVN 149 (184)
Q Consensus 124 r~e~q~L~~~RQELt~qvq~ltqeL~ 149 (184)
|-||..|.+.|..+--+||.|...|.
T Consensus 144 R~EaeQLQsLR~avRqElqELE~QL~ 169 (179)
T PF14723_consen 144 REEAEQLQSLRSAVRQELQELEFQLE 169 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777777777776666554
No 373
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=27.46 E-value=4.3e+02 Score=23.21 Aligned_cols=44 Identities=23% Similarity=0.362 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 030034 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158 (184)
Q Consensus 115 ~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqi 158 (184)
-++.|+..--.+..++....-.|..|++++++|-.|+-.|++.+
T Consensus 162 kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~L 205 (216)
T KOG1962|consen 162 KLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKL 205 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 45556666666777777888888889999999988888887654
No 374
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=27.25 E-value=2.5e+02 Score=20.82 Aligned_cols=29 Identities=17% Similarity=0.469 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 120 VVQLRAEVQKLNSSRQELTTQIKGLTKDV 148 (184)
Q Consensus 120 l~Q~r~e~q~L~~~RQELt~qvq~ltqeL 148 (184)
|.+.|.+|+.+..---.|..+|..+...+
T Consensus 6 Ll~Ir~dIk~vd~KVdaLq~~V~~l~~~~ 34 (75)
T PF05531_consen 6 LLVIRQDIKAVDDKVDALQTQVDDLESNL 34 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44556666555444444444444433333
No 375
>PRK11020 hypothetical protein; Provisional
Probab=27.24 E-value=3.1e+02 Score=22.12 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 030034 116 VRAEVVQLRAEVQKLNSSR 134 (184)
Q Consensus 116 ~k~El~Q~r~e~q~L~~~R 134 (184)
...|+..+..+|.+|-..+
T Consensus 36 f~~E~~~l~k~I~~lk~~~ 54 (118)
T PRK11020 36 FEKEKATLEAEIARLKEVQ 54 (118)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444
No 376
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=27.13 E-value=3.9e+02 Score=22.64 Aligned_cols=71 Identities=14% Similarity=0.235 Sum_probs=43.1
Q ss_pred hhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHhhh
Q 030034 104 LKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE-NKQLIAMRADIDGIRSELVEARF 177 (184)
Q Consensus 104 ~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d-~qqip~l~aEid~lrqElqr~Ra 177 (184)
..||+.+ ..+.++|..++.+|+.++..|+---..+..--+.|.+-..+ +.+.-.+...+..|++|+...|.
T Consensus 139 ~~Le~~~---~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~ 210 (221)
T PF05700_consen 139 EQLEAML---KRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKR 210 (221)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445443 35667888889999999999876555444433344433322 34445556666666666666554
No 377
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.12 E-value=4.8e+02 Score=23.99 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=15.8
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 030034 118 AEVVQLRAE-VQKLNSSRQELTTQIKGL 144 (184)
Q Consensus 118 ~El~Q~r~e-~q~L~~~RQELt~qvq~l 144 (184)
.|+.+.|-+ ++.|.....|+--++..|
T Consensus 266 ~~~ek~Hke~v~qL~~k~~~~lk~~a~l 293 (305)
T KOG3990|consen 266 KELEKKHKERVQQLQKKKEESLKAIAQL 293 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777766 666665555554444444
No 378
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=26.96 E-value=3.7e+02 Score=22.33 Aligned_cols=123 Identities=16% Similarity=0.168 Sum_probs=58.1
Q ss_pred HHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHH-HHHHHHHHH
Q 030034 50 MHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAE-VVQLRAEVQ 128 (184)
Q Consensus 50 iqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~E-l~Q~r~e~q 128 (184)
+++.--.+++|=+.-.+++++|..+..++---...... ....++..-+++..| +-++.|+..+ +.+...=..
T Consensus 10 ~~rr~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~----~~~~l~~~~~ri~~m---~~gg~~f~i~~~~~~~~~r~ 82 (158)
T PF09486_consen 10 IQRRRRRERRLRARLAAQRRALAAAEAELAEQQAEVEA----ARQRLRAHDARIDAM---MTGGAPFSIDEYLALRRYRD 82 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHH---HcCCCCccHHHHHHHHHHHH
Confidence 34455566777777777788777777666554444332 222334444444444 4466666633 333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHhhhhh
Q 030034 129 KLNSSRQELTTQIKGLTKDVNRLEAEN----KQLIAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 129 ~L~~~RQELt~qvq~ltqeL~r~~~d~----qqip~l~aEid~lrqElqr~Raa~ 179 (184)
.|....+.+..++..+.+.|....... .-|.-+.+-||-.++-+.++|.++
T Consensus 83 ~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~~ 137 (158)
T PF09486_consen 83 VLEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRAA 137 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 333333333333333333333322221 223334444444444444444433
No 379
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=26.82 E-value=4.8e+02 Score=24.36 Aligned_cols=27 Identities=19% Similarity=0.482 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 115 PVRAEVVQLRAEVQKLNSSRQELTTQI 141 (184)
Q Consensus 115 ~~k~El~Q~r~e~q~L~~~RQELt~qv 141 (184)
.+++++.++..+++.|...-.++..++
T Consensus 73 ~l~~~~~~l~~~~~~~~~~~~~~~~~~ 99 (418)
T TIGR00414 73 EIKKELKELKEELTELSAALKALEAEL 99 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555444444444433
No 380
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=26.69 E-value=82 Score=23.29 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR 150 (184)
Q Consensus 117 k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r 150 (184)
+..|.++|.+..+....--+..+.++.+..|+++
T Consensus 3 ~~~L~~L~~eL~~~~~ld~~~~~~L~~l~~dIe~ 36 (85)
T PF14357_consen 3 QELLEKLHQELEQNPPLDEETRAELSSLDDDIEA 36 (85)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 3444444444444444334444444444444443
No 381
>PF01017 STAT_alpha: STAT protein, all-alpha domain; InterPro: IPR013800 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the all-alpha helical domain, which consists of four long helices arranged in a bundle with a left-handed twist (coiled-coil), which in turn forms a right-handed superhelix.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 3CWG_B 1BG1_A 1Y1U_B.
Probab=26.39 E-value=3.7e+02 Score=22.10 Aligned_cols=39 Identities=23% Similarity=0.435 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030034 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE 154 (184)
Q Consensus 116 ~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d 154 (184)
++.+-..+..-...|...|+++..+++.+...+..+++.
T Consensus 59 ~~~~~~~~~~~~~~L~~~R~~lv~~l~~~~~~~~~lq~~ 97 (182)
T PF01017_consen 59 LKQEQQQLQQMLNELDQKRKELVSKLKETLNCLEQLQSQ 97 (182)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666667799999999999999888888777743
No 382
>TIGR01791 CM_archaeal chorismate mutase, archaeal type. This model represents a clade of archaeal chorismate mutases. Chorismate mutase catalyzes the conversion of chorismate into prephenate which is subsequently converted into either phenylalanine or tyrosine. In Sulfolobus this gene is found as a fusion with prephenate dehydrogenase (although the non-TIGR annotation contains a typographical error indicating it as a dehydratase) which is the next enzyme in the tyrosine biosynthesis pathway. The Archaeoglobus gene contains an N-terminal prephenate dehydrogenase domain and a C-terminal prephenate dehydratase domain followed by a regulatory amino acid-binding ACT domain. The Thermoplasma volcanium gene is adjacent to prephenate dehydratase.
Probab=26.34 E-value=2.4e+02 Score=19.97 Aligned_cols=34 Identities=18% Similarity=0.376 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (184)
Q Consensus 114 e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqe 147 (184)
+.+|.++..+-.++-+|.+.|..++.+|-.+.+.
T Consensus 2 ~~lR~~Id~iD~~i~~Ll~~R~~l~~~i~~~K~~ 35 (83)
T TIGR01791 2 EELRQEIEEIDKSILDLIEKRIKIARKIGEIKHN 35 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999887775
No 383
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=26.19 E-value=1.8e+02 Score=29.45 Aligned_cols=54 Identities=26% Similarity=0.353 Sum_probs=38.0
Q ss_pred HHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 97 RELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEA 153 (184)
Q Consensus 97 Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~ 153 (184)
|++.-.+-.||.+++.-+ +||.|-.+++.+|...=..+.+.++.||.||.+.++
T Consensus 20 ~~~~~~v~~l~~~v~~kd---~elr~rqt~~~~l~~~~~~~~~~i~~ltnel~k~r~ 73 (732)
T KOG0614|consen 20 RELQNLVPQLEEAVQRKD---AELRQRQTILEELIKEISKLEGEIAKLTNELDKLRS 73 (732)
T ss_pred HHHHhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhc
Confidence 334444445555544333 677777788888877777888889999999998887
No 384
>PRK09239 chorismate mutase; Provisional
Probab=26.00 E-value=1.8e+02 Score=22.19 Aligned_cols=35 Identities=14% Similarity=0.205 Sum_probs=30.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (184)
Q Consensus 113 ~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqe 147 (184)
.+.+|.++..+-.++=+|.+.|..++.+|-.+.++
T Consensus 12 L~~lR~~ID~ID~eIv~LLa~R~~l~~~Ia~~K~~ 46 (104)
T PRK09239 12 LAALRQSIDNIDAALIHMLAERFKCTQAVGVLKAE 46 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999777765
No 385
>PF10704 DUF2508: Protein of unknown function (DUF2508); InterPro: IPR019644 This entry represents a protein family of unknown function that is conserved in the firmicutes.
Probab=25.77 E-value=73 Score=22.62 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcc
Q 030034 159 IAMRADIDGIRSELVEARFEIRY 181 (184)
Q Consensus 159 p~l~aEid~lrqElqr~Raa~Ey 181 (184)
..|..+|+..++|+.+++..|+.
T Consensus 15 ~~Ll~~I~~ak~ew~~a~~~~~~ 37 (71)
T PF10704_consen 15 EELLEEIEQAKQEWENARRLFEN 37 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888999999999999998875
No 386
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=25.68 E-value=4.6e+02 Score=23.02 Aligned_cols=21 Identities=24% Similarity=-0.031 Sum_probs=12.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHH
Q 030034 153 AENKQLIAMRADIDGIRSELV 173 (184)
Q Consensus 153 ~d~qqip~l~aEid~lrqElq 173 (184)
....++-..+++++..+..+.
T Consensus 187 ~~~a~~~~~~a~l~~a~~~l~ 207 (346)
T PRK10476 187 ALVAQRAAREAALAIAELHLE 207 (346)
T ss_pred hhHHHHHHHHHHHHHHHHHhh
Confidence 334445566677776665554
No 387
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=25.59 E-value=2.6e+02 Score=20.16 Aligned_cols=63 Identities=16% Similarity=0.283 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 030034 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRL--------EAENKQLIAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 114 e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~--------~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (184)
..++..|..+..++..+.. ++...+..|.++.... +.-.-|...|.-++-.+=+++|.+...|
T Consensus 42 ~~~~~~l~~~~~~~~~~~~---~i~~~lk~l~~~~~~~~~~~~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~ 112 (117)
T smart00503 42 KELREKLERLIDDIKRLAK---EIRAKLKELEKENLENRASGSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKY 112 (117)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHhhcccCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666555555543 3333333333333221 1223455666777777777777666544
No 388
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=25.55 E-value=6.4e+02 Score=24.59 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 030034 130 LNSSRQELTTQIKGLTK 146 (184)
Q Consensus 130 L~~~RQELt~qvq~ltq 146 (184)
|...++.|+.+.+.|..
T Consensus 104 l~~~~~~L~~~F~~LA~ 120 (475)
T PRK10361 104 MINSEQRLSEQFENLAN 120 (475)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 389
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=25.48 E-value=5.4e+02 Score=23.76 Aligned_cols=56 Identities=20% Similarity=0.281 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 030034 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSE 171 (184)
Q Consensus 116 ~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqE 171 (184)
++.=+....+|++-+....+.|..+++.+...+...-...+++-.|.-|.+..++=
T Consensus 333 ~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ 388 (458)
T COG3206 333 LRQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSL 388 (458)
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHH
Confidence 34444455666777888889999999999999999988888888888888877653
No 390
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=25.45 E-value=3.2e+02 Score=24.27 Aligned_cols=41 Identities=10% Similarity=0.226 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhh
Q 030034 47 RREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPK 87 (184)
Q Consensus 47 ~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~ 87 (184)
..-|..|...-+.|.++.-.|..+++.-+..|..++..-.+
T Consensus 179 ~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~ 219 (259)
T PF08657_consen 179 REKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSD 219 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 34567777888888888888888888888888888654443
No 391
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=25.43 E-value=3.8e+02 Score=21.97 Aligned_cols=70 Identities=21% Similarity=0.276 Sum_probs=37.5
Q ss_pred hHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 74 SKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKG 143 (184)
Q Consensus 74 aq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ 143 (184)
...||...++.|+.++.-.-.-.-.+-+-..+++.+..+....+.++.+++-...|+.-......+....
T Consensus 65 ~~kele~~~~qv~~Lr~~e~~le~~~~~a~~~~~~e~~~l~~a~~~~~~a~r~~eKf~eL~~~~~~e~~~ 134 (152)
T PF07321_consen 65 SLKELEKWQQQVASLREREAELEQQLAEAEEQLEQERQALEEARKQLQQARRQQEKFAELAEQEQAEARQ 134 (152)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666665322222222333334556666666666666666666666665555444444433
No 392
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=25.28 E-value=6.3e+02 Score=24.41 Aligned_cols=42 Identities=14% Similarity=0.352 Sum_probs=27.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030034 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE 154 (184)
Q Consensus 113 ~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d 154 (184)
...++.++..+...+..+...+.++...++++.++-..++..
T Consensus 378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~k 419 (569)
T PRK04778 378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREK 419 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666667777777777777777777666555543
No 393
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=25.12 E-value=1.1e+02 Score=20.82 Aligned_cols=21 Identities=10% Similarity=0.322 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 030034 159 IAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 159 p~l~aEid~lrqElqr~Raa~ 179 (184)
.+|+..++.|+..++++.++|
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~f 22 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAF 22 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666665
No 394
>COG3923 PriC Primosomal replication protein N'' [DNA replication, recombination, and repair]
Probab=25.08 E-value=3.9e+02 Score=22.88 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhhhh----------HHhhHHHHHHHHhhHHHHHHHhhhhhhh
Q 030034 45 IQRREMHRIISENRHA----------IDDNTHLQRELTASKDEIHRLGQIIPKL 88 (184)
Q Consensus 45 ~Q~~EiqrLl~dNqRL----------AathvaLrqeL~aaq~El~~l~~~i~~i 88 (184)
+||.+..+.+.+|-+. ...--.|.|+|.+.++=+-+-.+++-+|
T Consensus 113 ~qhqd~Errl~~m~~~r~l~l~q~s~~vEqq~lqqel~~~e~RlarCr~Aleki 166 (175)
T COG3923 113 AQHQDYERRLLAMVQDRRLQLAQQSDLVEQQKLQQELEAYEQRLARCRHALEKI 166 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777776443 3445567888888877777776666554
No 395
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=24.97 E-value=1.7e+02 Score=25.67 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 030034 134 RQELTTQIKGLTKD 147 (184)
Q Consensus 134 RQELt~qvq~ltqe 147 (184)
|.-+-.++..|.+|
T Consensus 88 RDRFR~Rn~ELE~e 101 (248)
T PF08172_consen 88 RDRFRQRNAELEEE 101 (248)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 396
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=24.77 E-value=3.4e+02 Score=27.85 Aligned_cols=104 Identities=20% Similarity=0.235 Sum_probs=69.2
Q ss_pred hhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHH
Q 030034 56 ENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQ 135 (184)
Q Consensus 56 dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQ 135 (184)
+|..+-.+-+.|..||..|=-+| |+++--=-|. =..=|-++.+-.|=-|+---.--|+-++.
T Consensus 264 enkAf~~nt~sl~eels~aGs~l------iGdvdegAdl------------lGMGrEVeNLilENsqLLetKNALNiVKN 325 (832)
T KOG2077|consen 264 ENKAFDRNTESLFEELSSAGSGL------IGDVDEGADL------------LGMGREVENLILENSQLLETKNALNIVKN 325 (832)
T ss_pred hhhcccccccchhhhhhhccccc------cccccchhhh------------hcchHHHHHHHHhhHHHHhhhhHHHHHHH
Confidence 46667777788888887665333 4544322221 13335566777777777766677888999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-----------hHHHHHHHHHHHHHHHHHhhh
Q 030034 136 ELTTQIKGLTKDVNRLEAENK-----------QLIAMRADIDGIRSELVEARF 177 (184)
Q Consensus 136 ELt~qvq~ltqeL~r~~~d~q-----------qip~l~aEid~lrqElqr~Ra 177 (184)
+|.+||..|+-|-.-++.++- +|-.+..||..+++|..-+|-
T Consensus 326 DLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~ 378 (832)
T KOG2077|consen 326 DLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQ 378 (832)
T ss_pred HHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998877655555442 466677777788888777764
No 397
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=24.72 E-value=1.6e+02 Score=25.70 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 030034 135 QELTTQIKGLTKDVNRLEAENKQ 157 (184)
Q Consensus 135 QELt~qvq~ltqeL~r~~~d~qq 157 (184)
-+|..|++.|.+|+.++++.+.+
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~ 79 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQE 79 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH
Confidence 36666777777776666665443
No 398
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=24.72 E-value=3.5e+02 Score=24.62 Aligned_cols=64 Identities=20% Similarity=0.263 Sum_probs=44.8
Q ss_pred hhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 030034 90 ADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRAD 164 (184)
Q Consensus 90 ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aE 164 (184)
+|-|.+|++|.|...+| ..|-+-+|.--..|.+.-+||...+..+.++|.-++ +.+|.-.+..|
T Consensus 93 ~eme~~i~dL~een~~L----------~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~-~~~~~~~~v~e 156 (292)
T KOG4005|consen 93 EEMEYEIKDLTEENEIL----------QNENDSLRAINESLLAKNHELDSELELLRQELAELK-QQQQHNTRVIE 156 (292)
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH-HHHHHhhHHHh
Confidence 36688888888887665 456666777778888888888888888888877654 33444444433
No 399
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=24.59 E-value=2.7e+02 Score=19.93 Aligned_cols=94 Identities=17% Similarity=0.231 Sum_probs=69.1
Q ss_pred HHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhh--hhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 61 IDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLK--LEVELRASEPVRAEVVQLRAEVQKLNSSRQELT 138 (184)
Q Consensus 61 AathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~K--mEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt 138 (184)
.++-..|=.||...=.+|+.+-..+.++..+-+..+..++..... +..+ ....+..++.....++..|...+=.|+
T Consensus 7 ~d~~~~LP~el~r~l~~irelD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~I~~~~~~~~~l~deKv~lA 84 (105)
T PF12998_consen 7 LDSLENLPAELQRNLTLIRELDAKSQDLLEELDQQIQKFIKNHGSPSLSPE--KRRELLKEIQEEYERALELSDEKVALA 84 (105)
T ss_dssp HTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTS--S-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccccCChH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777777788888777888888888888888888777 7766 666788888888888999988888888
Q ss_pred HHHHH-HHHHHHHHHHhhh
Q 030034 139 TQIKG-LTKDVNRLEAENK 156 (184)
Q Consensus 139 ~qvq~-ltqeL~r~~~d~q 156 (184)
.++.. +.+-+.|+.+|..
T Consensus 85 ~~~~d~v~~hi~rLD~dl~ 103 (105)
T PF12998_consen 85 QQAYDLVDRHIRRLDQDLK 103 (105)
T ss_dssp HHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 88754 4555666655543
No 400
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=24.38 E-value=8e+02 Score=25.34 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 030034 144 LTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 144 ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (184)
.+.+++..+...--+|-|++|+++|+-++-|++.-.
T Consensus 263 ~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~ 298 (716)
T KOG4593|consen 263 LREELATLRENRETVGLLQEELEGLQSKLGRLEKLQ 298 (716)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666667778999999999999988887543
No 401
>COG3166 PilN Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.26 E-value=1.7e+02 Score=25.21 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhh
Q 030034 140 QIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFE 178 (184)
Q Consensus 140 qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa 178 (184)
-..-|++++..+.++.+.|+-++++.+.+.|.++.-...
T Consensus 56 ~~~~L~~e~~~l~~~~aei~~l~~~~~~~~qr~q~~~~~ 94 (206)
T COG3166 56 RNALLTTEIALLDAEIAEIQQLKEQTQALLQRLQVIEQL 94 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344567777777777777777777777777777765443
No 402
>PF14767 RPA_interact_M: Replication protein A interacting middle
Probab=24.24 E-value=1.1e+02 Score=22.69 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhhhhh--cccc
Q 030034 160 AMRADIDGIRSELVEARFEI--RYFL 183 (184)
Q Consensus 160 ~l~aEid~lrqElqr~Raa~--EyEk 183 (184)
.+.++++.+++|+.+-.-.| +||+
T Consensus 44 eiL~~mEei~~El~~eE~~ii~eyE~ 69 (83)
T PF14767_consen 44 EILLVMEEIQQELIREEQSIIEEYEK 69 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888776655 6654
No 403
>PRK00106 hypothetical protein; Provisional
Probab=24.17 E-value=7e+02 Score=24.57 Aligned_cols=52 Identities=15% Similarity=0.218 Sum_probs=30.1
Q ss_pred HHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 99 LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR 150 (184)
Q Consensus 99 l~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r 150 (184)
|-.+-.+|+..-...+..++++.....++..+...+..--.++.+||+|=+|
T Consensus 120 LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~eak 171 (535)
T PRK00106 120 LSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAEAR 171 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 3334444444445555555666666666666666666666666666666444
No 404
>PF05302 DUF720: Protein of unknown function (DUF720); InterPro: IPR007966 This family consists of several uncharacterised Chlamydia proteins of unknown function.
Probab=24.12 E-value=1.9e+02 Score=23.61 Aligned_cols=40 Identities=15% Similarity=0.283 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhh
Q 030034 46 QRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQII 85 (184)
Q Consensus 46 Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i 85 (184)
-+.+|++.=.-||-.+|.+-.+++||.++++--+....+.
T Consensus 58 n~~~iq~vQ~sNQ~i~A~Rq~IQ~els~a~q~~Q~~~s~~ 97 (128)
T PF05302_consen 58 NSSEIQAVQTSNQQISANRQLIQQELSAAQQRAQANQSSV 97 (128)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHhh
Confidence 5678999999999999999999999999998766554443
No 405
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=23.83 E-value=5.3e+02 Score=23.88 Aligned_cols=75 Identities=24% Similarity=0.338 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhh-------HHHHHHHHhhHHHHHHHhhhhhhhhh---hhHHhHH----HHHHhhhh
Q 030034 40 EEEIEIQRREMHRIISENRHAIDDN-------THLQRELTASKDEIHRLGQIIPKLRA---DKEAHTR----ELFDRGLK 105 (184)
Q Consensus 40 Ee~La~Q~~EiqrLl~dNqRLAath-------vaLrqeL~aaq~El~~l~~~i~~i~a---e~e~q~R----el~ek~~K 105 (184)
|++|..+..||..|-..=-|.-.+- |--+=-|--|..||+.|++.|.-++. |+|.-|- ++--...|
T Consensus 81 ~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~K 160 (305)
T PF15290_consen 81 ENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKK 160 (305)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhH
Confidence 5566667777777765544443331 22222344578888888888887763 5654333 33345677
Q ss_pred hhhhhhcch
Q 030034 106 LEVELRASE 114 (184)
Q Consensus 106 mEaelRa~e 114 (184)
||.=|+++|
T Consensus 161 LEsLLqsME 169 (305)
T PF15290_consen 161 LESLLQSME 169 (305)
T ss_pred HHHHHHHHH
Confidence 887777654
No 406
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=23.76 E-value=4e+02 Score=26.04 Aligned_cols=89 Identities=20% Similarity=0.325 Sum_probs=48.3
Q ss_pred CCCCCCCCCcccCCCCCCC--------CCh------------hhhHHHHHHHHHHHHHH-HHhhhhhHHhhHHHHHHHHh
Q 030034 15 RGFRDGPRPVLTRGLAPMH--------FHP------------MTLEEEIEIQRREMHRI-ISENRHAIDDNTHLQRELTA 73 (184)
Q Consensus 15 rg~r~~p~p~~~~g~~~~~--------p~p------------~~LEe~La~Q~~EiqrL-l~dNqRLAathvaLrqeL~a 73 (184)
||.+.+|.|..|.+|+.+. .+| --|+.||++--+=+|.. +.|| ||---.||---=.-
T Consensus 216 rappsppvPVmHsp~rk~t~kdqqdWKIPp~ISNWKNpkGYTipLdkRlaadgrglq~v~INdn--FaKlseALy~adrK 293 (506)
T KOG2441|consen 216 RAPPSPPVPVMHSPSRKMTAKDQQDWKIPPCISNWKNPKGYTIPLDKRLAADGRGLQDVHINDN--FAKLSEALYIADRK 293 (506)
T ss_pred CCCCCCCCCcccCCCccccccccccccCCchhhcCcCCCCceecchhhhhhccCCcccceeccc--HHHHHHHHHHHHHH
Confidence 5666677777787655321 112 23899988754444443 4454 34333344222223
Q ss_pred hHHHHHHHh----hhhhhhhhhhHHhHHHHHHhhhh
Q 030034 74 SKDEIHRLG----QIIPKLRADKEAHTRELFDRGLK 105 (184)
Q Consensus 74 aq~El~~l~----~~i~~i~ae~e~q~Rel~ek~~K 105 (184)
|.+|+..-. .++.+=+.++|..+|+|.+|+.-
T Consensus 294 AReeV~~ra~~~r~ma~kek~~kE~kL~elAQkAR~ 329 (506)
T KOG2441|consen 294 AREEVRMRAQLERKMAEKEKEEKEQKLRELAQKARE 329 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443321 23344566788889999888764
No 407
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=23.51 E-value=1e+03 Score=26.30 Aligned_cols=125 Identities=22% Similarity=0.252 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHH
Q 030034 44 EIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQL 123 (184)
Q Consensus 44 a~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~ 123 (184)
...-.||+.=+-|+.-+-.+-..|.-+.--...++..+...|..+--+.+...-+++.....+=.+ +...+.-+
T Consensus 250 ~~~i~ei~~~~~el~k~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~~~------~~~~~~~~ 323 (1294)
T KOG0962|consen 250 EAKIEEIEKSLKELEKLLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERLEE------MGEKLREL 323 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHHHH------HHHhHHHH
Confidence 445667888888888899999999999999999999999999988888887777777665543222 33444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 030034 124 RAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVE 174 (184)
Q Consensus 124 r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr 174 (184)
..++..|...++.|...-..+.-+..+.+++.--.-.++-..+.+.+++++
T Consensus 324 e~~~~~l~~e~~~l~~~k~~~~~~~~~lq~e~~~~~~l~~~~~~~~~~~~~ 374 (1294)
T KOG0962|consen 324 EREISDLNEERSSLIQLKTELDLEQSELQAEAEFHQELKRQRDSLIQELAH 374 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666667777777777777777777777777777777777888777764
No 408
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=23.40 E-value=4.2e+02 Score=21.80 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=13.6
Q ss_pred hhHHhHHHHHHhhhhhhhhhhcc
Q 030034 91 DKEAHTRELFDRGLKLEVELRAS 113 (184)
Q Consensus 91 e~e~q~Rel~ek~~KmEaelRa~ 113 (184)
..|.+|+.++.+...++.+|.++
T Consensus 40 ~ld~~i~~~~~~L~~~~~~L~~~ 62 (188)
T PF10018_consen 40 ELDEQIRDILKQLKEARKELRTL 62 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666555543
No 409
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=23.28 E-value=92 Score=25.68 Aligned_cols=131 Identities=16% Similarity=0.257 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHH-
Q 030034 39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVR- 117 (184)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k- 117 (184)
+-+.|..-..+=++|-.+-+||..++..|+.+++.++..++.-......+-.+.+ ++..++ .++--|+.+...-+
T Consensus 13 l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~-~Lqfl~---~~~r~d~~~~~~~~e 88 (181)
T PF09311_consen 13 LQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVK-HLQFLV---SIKREDLIESRTAAE 88 (181)
T ss_dssp HHHHHHHHHHCCHHHHT---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHH-HHHHHH---Hhccccccccchhhh
Confidence 3455556666666777777777777777777777777777544444444443333 122221 11111111111100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 030034 118 AEVVQLRAEVQKLNSSRQELTTQIKGLT-------KDVNRLEAENKQLIAMRADIDGIRSELV 173 (184)
Q Consensus 118 ~El~Q~r~e~q~L~~~RQELt~qvq~lt-------qeL~r~~~d~qqip~l~aEid~lrqElq 173 (184)
.+-..+++++..|...+-++-...+.-. .+...+++...-+|+-..-+.+|.-+|.
T Consensus 89 ~~e~~~~~ei~~L~~l~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~E~~~rl~tL~nlv~q~~ 151 (181)
T PF09311_consen 89 HEEEKLRSEIDTLQELFPNLEEELRAEISELPSPKSEMAQLQSQGYEIPARLRTLHNLVIQYE 151 (181)
T ss_dssp -------------------------------------------S-TTS-HHHHHHHHHHHHHH
T ss_pred hhhhcccccchhHHHcCccccccccccccccccccchHHHHHhccccchHHHHHHHHHHHHHH
Confidence 0012234455555444444443333333 4445555666667777777777665554
No 410
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=23.26 E-value=7.6e+02 Score=24.69 Aligned_cols=38 Identities=16% Similarity=0.286 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhh
Q 030034 46 QRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQ 83 (184)
Q Consensus 46 Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~ 83 (184)
-...++..+.+|+.|..-......-|...+..++++..
T Consensus 99 L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e 136 (617)
T PF15070_consen 99 LEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQE 136 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556776654443444444444444555443
No 411
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=23.21 E-value=4.8e+02 Score=22.38 Aligned_cols=40 Identities=10% Similarity=0.142 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHH
Q 030034 37 MTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKD 76 (184)
Q Consensus 37 ~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~ 76 (184)
...+..++.-...+..+-.+...+-.....++..+..++.
T Consensus 83 ~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~ 122 (334)
T TIGR00998 83 AKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQARE 122 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666555444444444444444444443
No 412
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=23.13 E-value=5e+02 Score=22.57 Aligned_cols=64 Identities=5% Similarity=0.055 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhh
Q 030034 39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLK 105 (184)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~K 105 (184)
++..+....+.+..+...-+.+....- .+++..++.++......+...+.+-+ ..+.|++++.-
T Consensus 79 ~~~~l~~~~a~l~~~~~~l~~~~~~~~--~~~i~~~~~~l~~ak~~l~~a~~~~~-r~~~L~~~g~v 142 (331)
T PRK03598 79 YENALMQAKANVSVAQAQLDLMLAGYR--DEEIAQARAAVKQAQAAYDYAQNFYN-RQQGLWKSRTI 142 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCC
Confidence 455666666666555554444332210 13344444444444333333333222 23455555543
No 413
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=22.94 E-value=2.6e+02 Score=23.66 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=14.0
Q ss_pred hhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhH
Q 030034 82 GQIIPKLRADKEAHTRELFDRGLKLEVELRASEPV 116 (184)
Q Consensus 82 ~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~ 116 (184)
+.....+...=|.-.++|-+.+.+|+.++...|.+
T Consensus 108 ~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~ 142 (171)
T PF04799_consen 108 SSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEI 142 (171)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444433333
No 414
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=22.91 E-value=3.6e+02 Score=23.78 Aligned_cols=54 Identities=19% Similarity=0.218 Sum_probs=38.0
Q ss_pred hhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030034 104 LKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ 157 (184)
Q Consensus 104 ~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qq 157 (184)
...+|=-|+.+.-|....+...-|..|....+.|-.+|..|+++|..++.-.-+
T Consensus 201 rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 201 RNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred hhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666677777777777777777777777777777777777777776654433
No 415
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=22.81 E-value=1.6e+02 Score=21.48 Aligned_cols=46 Identities=15% Similarity=0.323 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHH-------HHHHHHHHHHHHHhhhhh
Q 030034 134 RQELTTQIKGLTKDVNRLEAENKQLIAM-------RADIDGIRSELVEARFEI 179 (184)
Q Consensus 134 RQELt~qvq~ltqeL~r~~~d~qqip~l-------~aEid~lrqElqr~Raa~ 179 (184)
=+++...+-.+..-|+++++-+..+|.+ ..+|..|++++..-+..+
T Consensus 23 ~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L 75 (83)
T PF07544_consen 23 SKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVL 75 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777888777776655 566777777766666554
No 416
>PRK11281 hypothetical protein; Provisional
Probab=22.72 E-value=9.8e+02 Score=25.78 Aligned_cols=51 Identities=16% Similarity=0.211 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhc
Q 030034 127 VQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEIR 180 (184)
Q Consensus 127 ~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (184)
++++...=+.|+..+...|+.++....++ -..+..+|.++|-....+-.++
T Consensus 280 i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~---~~~~~~l~~~~q~~~~i~eqi~ 330 (1113)
T PRK11281 280 VAQELEINLQLSQRLLKATEKLNTLTQQN---LRVKNWLDRLTQSERNIKEQIS 330 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666777777777777666664444 3345566666666555554443
No 417
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=22.48 E-value=4.5e+02 Score=21.95 Aligned_cols=39 Identities=28% Similarity=0.358 Sum_probs=20.3
Q ss_pred hHHhHHHHHHhhhhhhhhh--hcchhHHHHHHHHHHHHHHH
Q 030034 92 KEAHTRELFDRGLKLEVEL--RASEPVRAEVVQLRAEVQKL 130 (184)
Q Consensus 92 ~e~q~Rel~ek~~KmEael--Ra~e~~k~El~Q~r~e~q~L 130 (184)
=+.+...|.+++..||..+ .|-+-+.=.|.|=|.|+..+
T Consensus 90 Le~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~ 130 (175)
T PRK13182 90 LEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEM 130 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHH
Confidence 3445555555555555543 23444555555555555543
No 418
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=22.47 E-value=4.8e+02 Score=22.04 Aligned_cols=57 Identities=25% Similarity=0.509 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhHHHHHHHHHHHHHHHHHhhhhhc
Q 030034 124 RAEVQKLNSSRQELTTQIKGLTKDVNRLE----AENKQLIAMRADIDGIRSELVEARFEIR 180 (184)
Q Consensus 124 r~e~q~L~~~RQELt~qvq~ltqeL~r~~----~d~qqip~l~aEid~lrqElqr~Raa~E 180 (184)
.++-+++.....+|-.++-.|....+.+. +.-..|-.++++.+.+.+++..++.-|+
T Consensus 123 ~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 123 EAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555544433322 3346788889999999999988886654
No 419
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=22.42 E-value=8e+02 Score=24.62 Aligned_cols=75 Identities=21% Similarity=0.327 Sum_probs=47.1
Q ss_pred hhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHhh------------
Q 030034 105 KLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIK-----------------GLTKDVNRLEAEN------------ 155 (184)
Q Consensus 105 KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq-----------------~ltqeL~r~~~d~------------ 155 (184)
||+.-..+.+-|+.|+.-.-.|++.|.+-+.+|-.||. .|+++|.+.....
T Consensus 324 K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~l 403 (622)
T COG5185 324 KSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKL 403 (622)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHH
Confidence 34555556667788888888888888887777766653 3555555544332
Q ss_pred ------hhHHHHHHHHHHHHHHHHHhhhhh
Q 030034 156 ------KQLIAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 156 ------qqip~l~aEid~lrqElqr~Raa~ 179 (184)
..+-..--..++|.++|-+.|++|
T Consensus 404 eaq~~~~slek~~~~~~sl~~~i~~~~~~i 433 (622)
T COG5185 404 EAQGIFKSLEKTLRQYDSLIQNITRSRSQI 433 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 223333445667777777777765
No 420
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=22.39 E-value=3.3e+02 Score=20.23 Aligned_cols=58 Identities=22% Similarity=0.245 Sum_probs=32.2
Q ss_pred hHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 95 HTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (184)
Q Consensus 95 q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~ 152 (184)
-+..|-.++-+||.-+-.-=.--.....+-.++++|.+-|..|..++-+......++.
T Consensus 9 al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le 66 (89)
T PF13747_consen 9 ALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLE 66 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Confidence 3444555566666655332222222256666777777777777766666555554444
No 421
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=22.23 E-value=4.3e+02 Score=21.43 Aligned_cols=17 Identities=6% Similarity=0.139 Sum_probs=7.1
Q ss_pred hhhhhHHhHHHHHHhhh
Q 030034 88 LRADKEAHTRELFDRGL 104 (184)
Q Consensus 88 i~ae~e~q~Rel~ek~~ 104 (184)
+=.++...|..-++.+.
T Consensus 55 ~L~~R~~~I~~~l~~Ae 71 (184)
T PRK13455 55 MLDKRAEGIRSELEEAR 71 (184)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 422
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=22.13 E-value=7.5e+02 Score=24.19 Aligned_cols=56 Identities=13% Similarity=0.103 Sum_probs=43.0
Q ss_pred hHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 92 KEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (184)
Q Consensus 92 ~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqe 147 (184)
=+.+.++|+-++.+.|-+-+....=..-+++.--|..++.+.+|-+..+++....-
T Consensus 184 lk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~ 239 (499)
T COG4372 184 LKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQ 239 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578999999999998888777666666666777888888888887777665543
No 423
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=22.11 E-value=1.1e+03 Score=26.11 Aligned_cols=95 Identities=22% Similarity=0.369 Sum_probs=61.9
Q ss_pred HHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHH----------HHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 030034 67 LQRELTASKDEIHRLGQIIPKLRADKEAHTRE----------LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQE 136 (184)
Q Consensus 67 LrqeL~aaq~El~~l~~~i~~i~ae~e~q~Re----------l~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQE 136 (184)
|+.|...-++++.-+..-+...+-+..-+.|. +.+...+++--|.....+..++.-+..++..+.+..++
T Consensus 824 ~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e 903 (1294)
T KOG0962|consen 824 LRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKE 903 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444333332 23334455556666677778888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHH
Q 030034 137 LTTQIKGLTKDVNRLEAENKQLIAM 161 (184)
Q Consensus 137 Lt~qvq~ltqeL~r~~~d~qqip~l 161 (184)
+.++++.+..+|..+.++.-++-+=
T Consensus 904 ~~~~~~~~~~~l~e~~s~~e~~k~~ 928 (1294)
T KOG0962|consen 904 LLERIQPLKVELEEAQSEKEELKNE 928 (1294)
T ss_pred hHhhhcchhhhHHHHHHHHHHHHHH
Confidence 9999999999999988877665443
No 424
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=21.92 E-value=2.4e+02 Score=20.58 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (184)
Q Consensus 116 ~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~ 149 (184)
...++..++.+++.|...+..+.++.+.+.+.++
T Consensus 68 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 68 DSPELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666666666666666666666655544
No 425
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=21.90 E-value=4.9e+02 Score=21.93 Aligned_cols=96 Identities=20% Similarity=0.306 Sum_probs=52.0
Q ss_pred hhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 63 DNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIK 142 (184)
Q Consensus 63 thvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq 142 (184)
.+-.|+.+++..+.-..+....+.++..| .+.|.+-..+.+.++ +.++.++.+...|...|...+.-+ .
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~e----N~~L~epL~~a~~e~---~eL~k~L~~y~kdK~~L~~~k~rl----~ 96 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQE----NKRLSEPLKKAEEEV---EELRKQLKNYEKDKQSLQNLKARL----K 96 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 34457777776666555555555544444 444555555555443 356666666666666666555444 3
Q ss_pred HHHHHHHHHHHhh----hhHHHHHHHHHHHH
Q 030034 143 GLTKDVNRLEAEN----KQLIAMRADIDGIR 169 (184)
Q Consensus 143 ~ltqeL~r~~~d~----qqip~l~aEid~lr 169 (184)
.+.++|..+.-+. |++-.|..|.|.|.
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~ 127 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKLEQERDELY 127 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555544443 34444555555544
No 426
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=21.77 E-value=3.6e+02 Score=20.42 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 030034 117 RAEVVQLRAEVQKLNSSRQELTTQIKGL--TKDVNRLE 152 (184)
Q Consensus 117 k~El~Q~r~e~q~L~~~RQELt~qvq~l--tqeL~r~~ 152 (184)
|.++..+...+.+...-=+.+-+++..| .+|+++++
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~ 71 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4444444444444433334444444444 44444433
No 427
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=21.69 E-value=3.3e+02 Score=20.48 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030034 119 EVVQLRAEVQKLNSSRQELTTQ 140 (184)
Q Consensus 119 El~Q~r~e~q~L~~~RQELt~q 140 (184)
.+.++..++..|.+.+.+|...
T Consensus 7 q~~ql~~~i~~l~~~i~~l~~~ 28 (126)
T TIGR00293 7 ELQILQQQVESLQAQIAALRAL 28 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 428
>PRK11020 hypothetical protein; Provisional
Probab=21.45 E-value=3.7e+02 Score=21.68 Aligned_cols=33 Identities=6% Similarity=0.097 Sum_probs=24.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhhhccc
Q 030034 150 RLEAENKQLIAMRADIDGIRSELVEARFEIRYF 182 (184)
Q Consensus 150 r~~~d~qqip~l~aEid~lrqElqr~Raa~EyE 182 (184)
..++|.--|..+.-|++.|-.||.+.+.-=.|+
T Consensus 25 ~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~ 57 (118)
T PRK11020 25 SLRGDAEKYAQFEKEKATLEAEIARLKEVQSQK 57 (118)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888888888888877655443
No 429
>PHA00489 scaffolding protein
Probab=21.38 E-value=2.7e+02 Score=21.74 Aligned_cols=36 Identities=31% Similarity=0.383 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030034 120 VVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN 155 (184)
Q Consensus 120 l~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~ 155 (184)
|+|+|..+-+..+.=.|||.-.+.++.+-.-+.+-|
T Consensus 29 Lqqlr~~ygSf~sEy~elT~a~eKl~aek~DLivsN 64 (101)
T PHA00489 29 LQQLRESYGSFHSEYEELTEALEKLTAEKEDLIVSN 64 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 678999999999999999999998887755555443
No 430
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=21.26 E-value=5e+02 Score=21.79 Aligned_cols=32 Identities=3% Similarity=0.215 Sum_probs=24.7
Q ss_pred HHHHHHhhhhhHHhhHHHHHHHH-hhHHHHHHH
Q 030034 50 MHRIISENRHAIDDNTHLQRELT-ASKDEIHRL 81 (184)
Q Consensus 50 iqrLl~dNqRLAathvaLrqeL~-aaq~El~~l 81 (184)
+..++.++..+|..|..+-+.|. ..-..|..+
T Consensus 62 ~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~ 94 (236)
T cd07651 62 LDTLRLETESMAKSHLKFAKQIRQDLEEKLAAF 94 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66888889999999999988886 455555554
No 431
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=21.18 E-value=97 Score=31.05 Aligned_cols=36 Identities=28% Similarity=0.415 Sum_probs=31.1
Q ss_pred HHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhh
Q 030034 48 REMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQ 83 (184)
Q Consensus 48 ~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~ 83 (184)
+-|+.|+.||+-|-++..+||+.|...-+|=+++.-
T Consensus 309 ~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv 344 (655)
T KOG4343|consen 309 ARLQALLSENEQLKKENATLKRQLDELVSENQRLKV 344 (655)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence 457899999999999999999999998887666653
No 432
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=21.06 E-value=6.7e+02 Score=23.22 Aligned_cols=68 Identities=26% Similarity=0.390 Sum_probs=34.5
Q ss_pred hhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHhhh
Q 030034 102 RGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN----KQLIAMRADIDGIRSELVEARF 177 (184)
Q Consensus 102 k~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~----qqip~l~aEid~lrqElqr~Ra 177 (184)
|+++||.+|---.+...| |.+.-.+|-.-++.|+.|+.+.++-. |++-.-+.||+.|.+++...--
T Consensus 237 ria~Le~eLAmQKs~seE----------lkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sq 306 (330)
T KOG2991|consen 237 RIAELEIELAMQKSQSEE----------LKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQ 306 (330)
T ss_pred cHHHHHHHHHHHHhhHHH----------HHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666665444444444 44445556666666666666665532 3334444445555555444433
Q ss_pred hh
Q 030034 178 EI 179 (184)
Q Consensus 178 a~ 179 (184)
++
T Consensus 307 av 308 (330)
T KOG2991|consen 307 AV 308 (330)
T ss_pred Hh
Confidence 33
No 433
>PHA03386 P10 fibrous body protein; Provisional
Probab=21.04 E-value=4e+02 Score=20.68 Aligned_cols=42 Identities=24% Similarity=0.436 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 030034 120 VVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGI 168 (184)
Q Consensus 120 l~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~l 168 (184)
|.|.+++|+.+ ..||-.|..-+..++++++.+-++-+-++++
T Consensus 7 Ll~Ir~dIkav-------d~KVdaLQ~qV~dv~~n~~~LDa~~~qL~~l 48 (94)
T PHA03386 7 LTQILDAVQEV-------DTKVDALQTQLNGLEEDSQPLDGLPAQLTEL 48 (94)
T ss_pred HHHHHHHHHHH-------hhHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 45667777654 4555555555555555555555554444443
No 434
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=20.98 E-value=8.9e+02 Score=24.66 Aligned_cols=61 Identities=11% Similarity=0.169 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHH
Q 030034 40 EEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELF 100 (184)
Q Consensus 40 Ee~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ 100 (184)
++.+.....++.+|+.+-...-..--..++++.....|+..+...+..-..+-+.+-+.++
T Consensus 508 ~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~ 568 (782)
T PRK00409 508 KKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLL 568 (782)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667778888887766665555556666666666666665555544444343333333
No 435
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=20.95 E-value=3.3e+02 Score=19.71 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRL 151 (184)
Q Consensus 116 ~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~ 151 (184)
++.-+.+...+.-.|.+--..|+.+|+.|+..+.|+
T Consensus 33 Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 33 LQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333444444455555566666777776666654
No 436
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.92 E-value=2.6e+02 Score=18.46 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 116 VRAEVVQLRAEVQKLNSSRQELTT 139 (184)
Q Consensus 116 ~k~El~Q~r~e~q~L~~~RQELt~ 139 (184)
++++-.-+..|.++|.+.-+.|++
T Consensus 17 Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 17 LKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 437
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=20.90 E-value=4.9e+02 Score=21.60 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 030034 125 AEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 125 ~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (184)
.+...|...=+.-..+|..++..|.++.+ +|-....-|+.|+.-+++++...
T Consensus 93 ~~~a~l~~~l~~~~~~ia~~~raIarn~a---~id~~~er~~~l~r~~ea~~eda 144 (158)
T PF09486_consen 93 AELAALRQALRAAEDEIAATRRAIARNDA---RIDVCRERIDRLRRAAEAAAEDA 144 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHhHHHh
Confidence 33333333333444555556666666554 45566666777777666666543
No 438
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=20.87 E-value=9e+02 Score=24.64 Aligned_cols=39 Identities=10% Similarity=0.007 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHH
Q 030034 41 EEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIH 79 (184)
Q Consensus 41 e~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~ 79 (184)
+-+.....++..|+.+=.+.-.+.-..++++.....|+.
T Consensus 504 ~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~ 542 (771)
T TIGR01069 504 TFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQE 542 (771)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666665543333333333333333333333
No 439
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=20.86 E-value=1.1e+03 Score=25.52 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=11.3
Q ss_pred HhhhhhHHhhHHHHHHHHhhHHHHH
Q 030034 55 SENRHAIDDNTHLQRELTASKDEIH 79 (184)
Q Consensus 55 ~dNqRLAathvaLrqeL~aaq~El~ 79 (184)
.+-|.|-+|..++..++--++-||.
T Consensus 120 ~ekq~lQ~ti~~~q~d~ke~etelE 144 (1265)
T KOG0976|consen 120 MEKQKLQDTIQGAQDDKKENEIEIE 144 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 440
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=20.82 E-value=92 Score=27.58 Aligned_cols=33 Identities=33% Similarity=0.476 Sum_probs=24.8
Q ss_pred HHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHH
Q 030034 61 IDDNTHLQRELTASKDEIHRLGQIIPKLRADKEA 94 (184)
Q Consensus 61 AathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~ 94 (184)
.++=.||++ ++|.++||-+|+++|++|-+=.|.
T Consensus 115 ~~~~~AlqK-IsALEdELs~LRaQIA~IV~~qe~ 147 (253)
T PF05308_consen 115 PANEAALQK-ISALEDELSRLRAQIAKIVAAQEQ 147 (253)
T ss_pred CCCHHHHHH-HHHHHHHHHHHHHHHHHHHhcccc
Confidence 334455554 689999999999999999775554
No 441
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=20.78 E-value=4.5e+02 Score=22.15 Aligned_cols=65 Identities=28% Similarity=0.429 Sum_probs=38.6
Q ss_pred HHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhh-cchhHHHHHHHHHHHHHHH-HHHHHHHHH
Q 030034 75 KDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELR-ASEPVRAEVVQLRAEVQKL-NSSRQELTT 139 (184)
Q Consensus 75 q~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelR-a~e~~k~El~Q~r~e~q~L-~~~RQELt~ 139 (184)
+.|+.+--..|++++-|.-.---++-||.+-.+++-- -.++||+|+.-+.--||.- .+.|.|||.
T Consensus 17 ~eeV~~~Ir~iGDlqRE~~RLeTemnDk~aai~e~Yapq~~~lk~EI~~L~k~vq~yCeanrDELTe 83 (170)
T COG4396 17 KEEVTAFIRQIGDLQREVKRLETEMNDKKAAIEEEYAPQAAPLKAEIMSLTKRVQAYCEANRDELTE 83 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCHHHHhc
Confidence 3444444455555555444333444555555555433 3568999998888777765 456777774
No 442
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=20.77 E-value=5.3e+02 Score=21.90 Aligned_cols=18 Identities=28% Similarity=0.566 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 030034 134 RQELTTQIKGLTKDVNRL 151 (184)
Q Consensus 134 RQELt~qvq~ltqeL~r~ 151 (184)
|.++..++..|.++|...
T Consensus 155 ~~e~~~~l~~l~~ei~~~ 172 (176)
T PF12999_consen 155 REELEKKLEELEKEIQAA 172 (176)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 443
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=20.74 E-value=1.5e+02 Score=21.49 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=18.6
Q ss_pred CChhhhHHHHHHHHHHHHHHHHh
Q 030034 34 FHPMTLEEEIEIQRREMHRIISE 56 (184)
Q Consensus 34 p~p~~LEe~La~Q~~EiqrLl~d 56 (184)
....-|++||+.-..||.||=++
T Consensus 25 lsV~El~eRIalLq~EIeRlkAe 47 (65)
T COG5509 25 LSVAELEERIALLQAEIERLKAE 47 (65)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 45567899999999999988665
No 444
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=20.65 E-value=6.8e+02 Score=23.14 Aligned_cols=45 Identities=27% Similarity=0.358 Sum_probs=24.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030034 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ 157 (184)
Q Consensus 113 ~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qq 157 (184)
.|.++....|+.-|++.+.-..+||..+-..+..-..|++.+...
T Consensus 135 LEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~ 179 (319)
T PF09789_consen 135 LEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNY 179 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555444433
No 445
>TIGR01801 CM_A chorismate mutase domain of gram positive AroA protein. This model represents a small clade of chorismate mutase domains N-terminally fused to the first enzyme in the chorismate pathway, 2-dehydro-3-deoxyphosphoheptanoate aldolase (DAHP synthetase, AroA) which are found in some gram positive species and Deinococcus. Only in Deinococcus, where this domain is the sole CM domain in the genome can a trusted assignment of function be made. In the other species there is at least one other trusted CM domain present. The similarity between the Deinococcus gene and the others in this clade is sufficiently strong (~44% identity), that the whole clade can be trusted to be functional. The possibility exists, however, that in the gram positive species the fusion to the first enzyme in the pathway has evolved a separate, regulatory role.
Probab=20.63 E-value=2.7e+02 Score=21.08 Aligned_cols=35 Identities=37% Similarity=0.371 Sum_probs=30.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (184)
Q Consensus 113 ~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqe 147 (184)
.+.+|+++.++-.++-+|...|-.++.+|-.+.+.
T Consensus 6 L~~lR~~ID~ID~eIl~LL~eR~~~~~~Ig~~K~~ 40 (102)
T TIGR01801 6 LEDLRAEVDQLNRQILALISRRGEVVAQIGHAKSA 40 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999777664
No 446
>COG5293 Predicted ATPase [General function prediction only]
Probab=20.57 E-value=8.6e+02 Score=24.31 Aligned_cols=81 Identities=22% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHH
Q 030034 99 LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSR------QELTTQIKGLTKDVNRLE---AENKQLIAMRADIDGIR 169 (184)
Q Consensus 99 l~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~R------QELt~qvq~ltqeL~r~~---~d~qqip~l~aEid~lr 169 (184)
|=+++.++++||..+++-+.++-.-|+|--..-..| |-|....-.+.-||+-.. ++..+.-++..=|-.++
T Consensus 340 l~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~elae~~~rie~l~k~~~~~~~i~~lk 419 (591)
T COG5293 340 LQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGELAELEYRIEPLRKLHALDQYIGTLK 419 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhh
Q 030034 170 SELVEARFEI 179 (184)
Q Consensus 170 qElqr~Raa~ 179 (184)
+|+.+.-..+
T Consensus 420 he~l~~~~r~ 429 (591)
T COG5293 420 HECLDLEERI 429 (591)
T ss_pred HHHHHHHHHh
No 447
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=20.56 E-value=1.2e+03 Score=26.13 Aligned_cols=59 Identities=24% Similarity=0.304 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 030034 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE----AENKQLIAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 114 e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~----~d~qqip~l~aEid~lrqElqr~Raa~ 179 (184)
.+.+.-..|++.++.+| ..+.+...++|.-+. ...++|-..-+||.+|-.++-...-.|
T Consensus 1685 ~~ar~rAe~L~~eA~~L-------l~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1685 QAARERAEQLRTEAEKL-------LGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred hhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344444555555554 444444444444433 456788888899999999987766554
No 448
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=20.41 E-value=7.9e+02 Score=23.82 Aligned_cols=56 Identities=29% Similarity=0.400 Sum_probs=41.2
Q ss_pred CChhhhHHHHHH----HHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHH
Q 030034 34 FHPMTLEEEIEI----QRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRE 98 (184)
Q Consensus 34 p~p~~LEe~La~----Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Re 98 (184)
..|.++..|.+. -...|.+...+|-+|--+-..+-|.|.|.+. ++-++++|.+-|+
T Consensus 274 ~lP~~m~tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qe---------akek~~KEAqare 333 (442)
T PF06637_consen 274 HLPKIMTTKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQE---------AKEKAGKEAQARE 333 (442)
T ss_pred hchHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Confidence 456677776654 4678889999999998888888888888775 3445667766665
No 449
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=20.32 E-value=1.9e+02 Score=28.99 Aligned_cols=40 Identities=28% Similarity=0.384 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHhhhh
Q 030034 136 ELTTQIKGLTKDVNRLE---AENKQLIAMRADIDGIRSELVEARFE 178 (184)
Q Consensus 136 ELt~qvq~ltqeL~r~~---~d~qqip~l~aEid~lrqElqr~Raa 178 (184)
||--|-+....|..++. .+|+ +++|||+-||.|-|++|.-
T Consensus 630 ell~Qfhm~~~Ems~llery~eNe---~l~aelk~lreenq~lr~~ 672 (673)
T KOG4378|consen 630 ELLLQFHMFMREMSRLLERYNENE---MLKAELKFLREENQTLRCG 672 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHhhhhhhcc
Confidence 56667777788888887 5555 4999999999999999864
No 450
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=20.27 E-value=1.1e+03 Score=25.49 Aligned_cols=138 Identities=13% Similarity=0.195 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHhhhhhHH-------hhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHH-----hHHHHHHhhhhhhhhh
Q 030034 43 IEIQRREMHRIISENRHAID-------DNTHLQRELTASKDEIHRLGQIIPKLRADKEA-----HTRELFDRGLKLEVEL 110 (184)
Q Consensus 43 La~Q~~EiqrLl~dNqRLAa-------thvaLrqeL~aaq~El~~l~~~i~~i~ae~e~-----q~Rel~ek~~KmEael 110 (184)
|-.+|.|+..|-.|-+.|-. +-.-|+++......++.++..--. .+..=|+ ..-+.-+.-.+..+..
T Consensus 176 ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~-~~~~Ie~l~~k~~~v~y~~~~~ey~~~k 254 (1072)
T KOG0979|consen 176 LLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERER-KKSKIELLEKKKKWVEYKKHDREYNAYK 254 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccchHhhhHHHHHHH
Confidence 44577777777777776653 455666666666666655542211 1111110 0111123345667788
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHhhhhhcc
Q 030034 111 RASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE----NKQLIAMRADIDGIRSELVEARFEIRY 181 (184)
Q Consensus 111 Ra~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d----~qqip~l~aEid~lrqElqr~Raa~Ey 181 (184)
.+.+-+|.++.-+--+++.+...+.+|-.++..++.+....+.+ +..+-..-..++.+.++++.+-.+.||
T Consensus 255 ~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~ 329 (1072)
T KOG0979|consen 255 QAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLES 329 (1072)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999988888888777777766555555555444432 233344445556666666666555554
No 451
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=20.24 E-value=3.2e+02 Score=19.14 Aligned_cols=50 Identities=18% Similarity=0.340 Sum_probs=30.1
Q ss_pred HHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030034 98 ELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ 157 (184)
Q Consensus 98 el~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qq 157 (184)
++.++...+|..+.. ..-++.+|...-..+..++..+..+|.+..+..+=
T Consensus 3 ~i~e~l~~ie~~l~~----------~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW 52 (71)
T PF10779_consen 3 DIKEKLNRIETKLDN----------HEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKW 52 (71)
T ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544433 34455556666666666677778887777766553
No 452
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=20.20 E-value=3.4e+02 Score=19.51 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=35.7
Q ss_pred hhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 104 LKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDV 148 (184)
Q Consensus 104 ~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL 148 (184)
.|+|.=|.-.+-++.|=.++|.++..+.+.|.-|..+.....+-+
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rv 51 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKV 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777778889999999999999999999988877666533
No 453
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=20.18 E-value=1.5e+02 Score=21.41 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Q 030034 140 QIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEAR 176 (184)
Q Consensus 140 qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~R 176 (184)
++..|..||.=.-.-..=|=.|..+|++|++|+..+|
T Consensus 47 ~~~rL~~Dl~in~~gi~lil~LLd~i~~L~~el~~L~ 83 (84)
T PF13591_consen 47 RIRRLHRDLGINLEGIALILDLLDRIEQLRRELRELR 83 (84)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555444455556677888888888888765
No 454
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.16 E-value=9.7e+02 Score=24.76 Aligned_cols=119 Identities=19% Similarity=0.333 Sum_probs=65.9
Q ss_pred HHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcc-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 61 IDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRAS-EPVRAEVVQLRAEVQKLNSSRQELTT 139 (184)
Q Consensus 61 AathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~-e~~k~El~Q~r~e~q~L~~~RQELt~ 139 (184)
+....-|...+-..+....++.....-+.-++| ++-.||.+..|==.++-++ +.+-.++.---....+|...=.+|.+
T Consensus 404 ~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~re-qlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s 482 (716)
T KOG4593|consen 404 LTQERDLNRAILGSKDDEKRLAEELPQVTKERE-QLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQS 482 (716)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHhHHHHHHHH-HHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555566666777777777777776766 5667777655433333222 22222222111122223333333444
Q ss_pred HHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHhhhhhc
Q 030034 140 QIKGLTKDVNRLEAEN----KQLIAMRADIDGIRSELVEARFEIR 180 (184)
Q Consensus 140 qvq~ltqeL~r~~~d~----qqip~l~aEid~lrqElqr~Raa~E 180 (184)
++-...|+|.....++ +.|-...-+++.|.+|--++|+..+
T Consensus 483 ~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~e 527 (716)
T KOG4593|consen 483 QLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRLRAQLE 527 (716)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444333 4588899999999999999997654
No 455
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=20.15 E-value=7.1e+02 Score=23.17 Aligned_cols=55 Identities=18% Similarity=0.277 Sum_probs=34.1
Q ss_pred hHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030034 92 KEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE 154 (184)
Q Consensus 92 ~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d 154 (184)
.|+-.++++-+-+.|+|--|.++-+-.|- .|.++=|+...++|+...-|+-+.+|
T Consensus 80 ~e~ls~~~~~~~~~~~aa~Rplel~e~Ek--------vlk~aIq~i~~~~q~~~~~Lnnvasd 134 (338)
T KOG3647|consen 80 CEMLSKELLHKESLMSAAQRPLELLEVEK--------VLKSAIQAIQVRLQSSRAQLNNVASD 134 (338)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 46777888888888888888887665552 23444444445555555544444444
No 456
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=20.14 E-value=4.4e+02 Score=20.78 Aligned_cols=74 Identities=18% Similarity=0.252 Sum_probs=40.1
Q ss_pred hhhhhHHhHHHHHHhhhhhhhh-------hhcc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030034 88 LRADKEAHTRELFDRGLKLEVE-------LRAS---EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ 157 (184)
Q Consensus 88 i~ae~e~q~Rel~ek~~KmEae-------lRa~---e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qq 157 (184)
|++.=|.-+-.++|-+.+||+- |.+. ..+|.|+.+++.|.+.=...=+.+.++| ...+++-+|.+.
T Consensus 2 irt~vEq~~~~FlD~aRq~e~~FlqKr~~LS~~kpe~~lkEEi~eLK~ElqRKe~Ll~Kh~~kI----~~w~~lL~d~~~ 77 (106)
T PF11594_consen 2 IRTYVEQLIQSFLDVARQMEAFFLQKRFELSAYKPEQVLKEEINELKEELQRKEQLLQKHYEKI----DYWEKLLSDAQN 77 (106)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh
Confidence 4555666666677777777753 3232 3478888888877754333333333333 333344444444
Q ss_pred HHHHHHHH
Q 030034 158 LIAMRADI 165 (184)
Q Consensus 158 ip~l~aEi 165 (184)
....++|+
T Consensus 78 ~~k~~~ev 85 (106)
T PF11594_consen 78 QHKVPDEV 85 (106)
T ss_pred hccCchhc
Confidence 44444443
No 457
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=20.10 E-value=1.1e+03 Score=25.42 Aligned_cols=123 Identities=15% Similarity=0.190 Sum_probs=64.4
Q ss_pred CCCChhhhHHHHHH-----HHHHHHHHHHhhhhh---------HHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHH--h
Q 030034 32 MHFHPMTLEEEIEI-----QRREMHRIISENRHA---------IDDNTHLQRELTASKDEIHRLGQIIPKLRADKEA--H 95 (184)
Q Consensus 32 ~~p~p~~LEe~La~-----Q~~EiqrLl~dNqRL---------AathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~--q 95 (184)
.+|.+.-||+=|.. +..=|..==-=||-| ..+..-||+||.||.. -.+-.-++.=. +
T Consensus 367 iSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaRe-------KnGvyisee~y~~~ 439 (1041)
T KOG0243|consen 367 ISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAARE-------KNGVYISEERYTQE 439 (1041)
T ss_pred eCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHh-------hCceEechHHHHHH
Confidence 35777778987754 333343333334443 4566677777777763 22322233222 2
Q ss_pred HHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 030034 96 TRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSR-------QELTTQIKGLTKDVNRLEAENKQLIAM 161 (184)
Q Consensus 96 ~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~R-------QELt~qvq~ltqeL~r~~~d~qqip~l 161 (184)
..+.-.+..++|.--.-+++++..+.++........-.+ +.|-.+++.-.+||...+.+.+++-.-
T Consensus 440 e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 440 EKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222323333333333444567777878777777444444 444445555555555555555555443
No 458
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=20.03 E-value=8.4e+02 Score=23.98 Aligned_cols=38 Identities=24% Similarity=0.433 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 030034 115 PVRAEVVQLRAEVQK----LNSSRQELTTQIKGLTKDVNRLE 152 (184)
Q Consensus 115 ~~k~El~Q~r~e~q~----L~~~RQELt~qvq~ltqeL~r~~ 152 (184)
..+.|+.++..+++. ..+.+++|......+.+++..+.
T Consensus 216 ~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk 257 (555)
T TIGR03545 216 KIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELK 257 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444555555444443 55555666666665555555544
Done!