Query 030034
Match_columns 184
No_of_seqs 79 out of 81
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 11:50:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030034.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030034hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ol1_A Vimentin; structural ge 96.6 0.053 1.8E-06 41.2 12.2 90 36-153 15-104 (119)
2 3swk_A Vimentin; cytoskeleton, 95.6 0.1 3.5E-06 37.8 9.1 50 103-152 34-83 (86)
3 3oja_B Anopheles plasmodium-re 95.2 0.2 6.9E-06 44.9 11.5 91 56-150 450-541 (597)
4 3na7_A HP0958; flagellar bioge 95.1 1.2 4.2E-05 36.9 18.9 61 92-152 65-131 (256)
5 2dfs_A Myosin-5A; myosin-V, in 95.0 0.12 4.2E-06 51.7 10.5 19 136-154 1020-1038(1080)
6 3oja_B Anopheles plasmodium-re 93.8 1 3.4E-05 40.3 12.9 17 43-59 458-474 (597)
7 2dfs_A Myosin-5A; myosin-V, in 93.7 1 3.5E-05 45.1 13.8 48 52-99 918-965 (1080)
8 1i84_S Smooth muscle myosin he 92.8 0.43 1.5E-05 47.7 9.5 41 39-79 862-902 (1184)
9 3m91_A Proteasome-associated A 92.6 0.37 1.3E-05 32.2 6.0 43 40-82 8-50 (51)
10 1i84_S Smooth muscle myosin he 91.8 0.49 1.7E-05 47.3 8.6 42 40-81 856-897 (1184)
11 3na7_A HP0958; flagellar bioge 91.7 5 0.00017 33.2 19.0 114 40-153 24-139 (256)
12 1wt6_A Myotonin-protein kinase 89.7 1.4 4.8E-05 32.1 7.2 44 104-147 17-60 (81)
13 1jcd_A Major outer membrane li 88.7 1.4 4.8E-05 29.5 6.1 37 129-175 8-44 (52)
14 3vkg_A Dynein heavy chain, cyt 88.0 26 0.00088 39.4 18.4 79 99-177 1992-2077(3245)
15 3ol1_A Vimentin; structural ge 87.3 7.7 0.00026 29.1 12.3 71 104-180 37-107 (119)
16 4dzn_A Coiled-coil peptide CC- 86.4 0.99 3.4E-05 27.5 3.8 27 63-89 3-29 (33)
17 3bas_A Myosin heavy chain, str 86.1 7.5 0.00026 27.8 9.3 54 116-176 19-72 (89)
18 3swk_A Vimentin; cytoskeleton, 86.1 7.3 0.00025 27.9 9.1 68 104-177 17-84 (86)
19 4e61_A Protein BIM1; EB1-like 86.0 4.6 0.00016 30.7 8.3 59 110-168 3-61 (106)
20 3i00_A HIP-I, huntingtin-inter 85.8 6.6 0.00023 30.0 9.3 73 88-176 9-81 (120)
21 2w83_C C-JUN-amino-terminal ki 84.6 4.6 0.00016 29.2 7.3 69 47-150 8-76 (77)
22 2fxo_A Myosin heavy chain, car 84.3 11 0.00039 28.3 10.6 52 93-147 12-63 (129)
23 1x79_B RAB GTPase binding effe 84.3 12 0.00041 28.5 10.5 91 62-158 13-103 (112)
24 3tnu_A Keratin, type I cytoske 83.4 12 0.00043 28.1 10.8 88 69-166 31-118 (131)
25 3m9b_A Proteasome-associated A 83.4 1.4 4.8E-05 37.9 4.9 44 40-83 53-96 (251)
26 3tnu_B Keratin, type II cytosk 82.9 13 0.00044 27.9 11.9 88 69-166 29-116 (129)
27 3lay_A Zinc resistance-associa 82.9 6.2 0.00021 31.9 8.3 39 143-181 100-138 (175)
28 3i00_A HIP-I, huntingtin-inter 82.3 3.7 0.00013 31.5 6.5 39 75-113 21-59 (120)
29 2v71_A Nuclear distribution pr 81.4 21 0.00072 29.3 14.8 54 39-92 47-104 (189)
30 2v4h_A NF-kappa-B essential mo 79.6 18 0.00063 27.5 10.2 44 113-156 64-107 (110)
31 2v71_A Nuclear distribution pr 79.2 25 0.00085 28.9 12.4 58 118-175 49-107 (189)
32 1joc_A EEA1, early endosomal a 79.1 11 0.00036 28.4 8.1 48 95-145 5-52 (125)
33 1uix_A RHO-associated kinase; 78.7 9.6 0.00033 27.0 7.1 45 123-167 2-46 (71)
34 2w6a_A ARF GTPase-activating p 78.7 9.4 0.00032 26.5 6.9 43 116-158 18-60 (63)
35 2xnx_M M protein, M1-BC1; cell 78.6 5.8 0.0002 31.7 6.7 41 135-178 90-130 (146)
36 1x79_B RAB GTPase binding effe 78.2 19 0.00064 27.4 9.2 60 114-179 9-68 (112)
37 1jcd_A Major outer membrane li 78.0 5.3 0.00018 26.6 5.4 34 121-154 7-40 (52)
38 1hjb_A Ccaat/enhancer binding 77.4 7.9 0.00027 28.1 6.6 54 107-160 25-78 (87)
39 3s9g_A Protein hexim1; cyclin 75.9 14 0.00049 27.9 7.8 51 98-158 34-84 (104)
40 1gu4_A CAAT/enhancer binding p 75.6 8 0.00027 27.5 6.1 54 107-160 25-78 (78)
41 3mov_A Lamin-B1; LMNB1, B-type 75.1 19 0.00065 26.2 8.2 81 92-181 10-90 (95)
42 1m1j_C Fibrinogen gamma chain; 74.2 35 0.0012 30.8 11.4 48 106-153 36-98 (409)
43 3hnw_A Uncharacterized protein 73.6 29 0.00099 26.8 9.9 60 116-175 66-129 (138)
44 3jsv_C NF-kappa-B essential mo 72.9 26 0.0009 26.0 8.7 84 67-154 7-90 (94)
45 3mq7_A Bone marrow stromal ant 72.8 15 0.0005 28.6 7.3 75 67-158 30-104 (121)
46 3tnu_B Keratin, type II cytosk 71.6 29 0.00099 25.9 12.4 50 80-139 61-110 (129)
47 1gk4_A Vimentin; intermediate 71.4 24 0.00081 24.8 10.6 26 85-110 17-42 (84)
48 1ci6_A Transcription factor AT 71.2 14 0.00047 24.9 6.2 40 113-152 18-57 (63)
49 1vcs_A Vesicle transport throu 71.0 27 0.00093 25.3 8.9 87 35-157 6-92 (102)
50 1t2k_D Cyclic-AMP-dependent tr 70.3 15 0.00052 24.2 6.2 36 117-152 21-56 (61)
51 2jee_A YIIU; FTSZ, septum, coi 69.4 29 0.001 25.0 9.2 60 93-155 12-71 (81)
52 3tnu_A Keratin, type I cytoske 69.3 34 0.0011 25.7 12.0 57 82-148 65-121 (131)
53 1go4_E MAD1 (mitotic arrest de 69.0 17 0.00058 27.1 6.8 62 118-179 12-91 (100)
54 3ghg_A Fibrinogen alpha chain; 68.6 82 0.0028 29.9 13.4 79 86-180 77-155 (562)
55 2qyw_A Vesicle transport throu 68.6 31 0.0011 25.0 8.7 43 98-156 60-102 (102)
56 3r4h_A Coiled coil helix CC-TE 68.3 6.2 0.00021 24.1 3.4 25 65-89 5-29 (34)
57 2yy0_A C-MYC-binding protein; 68.3 7.7 0.00026 25.7 4.3 26 115-140 23-48 (53)
58 3plt_A Sphingolipid long chain 67.9 25 0.00086 29.8 8.4 83 90-181 86-168 (234)
59 2js5_A Uncharacterized protein 67.9 19 0.00067 25.4 6.5 57 119-178 4-60 (71)
60 2no2_A HIP-I, huntingtin-inter 67.4 36 0.0012 25.3 14.8 30 103-132 46-75 (107)
61 1wle_A Seryl-tRNA synthetase; 66.3 71 0.0024 29.4 11.8 22 122-143 81-102 (501)
62 2wt7_A Proto-oncogene protein 65.3 21 0.00073 23.8 6.2 15 163-177 44-58 (63)
63 3onj_A T-snare VTI1; helix, HA 65.3 35 0.0012 24.5 10.1 40 120-159 50-93 (97)
64 2eqb_B RAB guanine nucleotide 64.7 35 0.0012 25.4 7.8 21 67-87 3-23 (97)
65 2no2_A HIP-I, huntingtin-inter 63.6 43 0.0015 24.9 12.8 97 63-172 2-101 (107)
66 3csx_A Putative uncharacterize 63.3 22 0.00077 25.7 6.2 58 119-179 16-73 (81)
67 1x8y_A Lamin A/C; structural p 62.5 36 0.0012 24.0 7.3 25 138-162 41-65 (86)
68 2yy0_A C-MYC-binding protein; 62.1 16 0.00056 24.1 5.0 30 125-154 19-48 (53)
69 4emc_A Monopolin complex subun 60.7 22 0.00074 29.5 6.5 49 37-85 9-57 (190)
70 1jnm_A Proto-oncogene C-JUN; B 60.2 16 0.00056 24.2 4.8 35 117-151 21-55 (62)
71 3hnw_A Uncharacterized protein 60.1 56 0.0019 25.1 11.7 94 47-155 38-133 (138)
72 3iox_A AGI/II, PA; alpha helix 59.5 1.2E+02 0.0039 28.5 14.2 50 65-114 5-54 (497)
73 2v4h_A NF-kappa-B essential mo 59.3 56 0.0019 24.8 9.3 27 147-173 53-79 (110)
74 3o0z_A RHO-associated protein 58.8 71 0.0024 25.8 16.1 65 89-153 43-111 (168)
75 3ibp_A Chromosome partition pr 58.7 96 0.0033 27.3 10.9 98 60-162 15-114 (302)
76 3lay_A Zinc resistance-associa 57.6 64 0.0022 25.8 8.7 58 45-109 71-128 (175)
77 2eqb_B RAB guanine nucleotide 57.4 33 0.0011 25.5 6.4 49 101-152 12-60 (97)
78 2dq0_A Seryl-tRNA synthetase; 57.2 84 0.0029 28.3 10.4 27 118-144 38-64 (455)
79 1gk4_A Vimentin; intermediate 55.8 49 0.0017 23.1 8.3 62 49-110 2-70 (84)
80 1l8d_A DNA double-strand break 55.7 52 0.0018 23.3 9.3 37 115-151 7-43 (112)
81 2xnx_M M protein, M1-BC1; cell 55.3 77 0.0026 25.2 9.6 38 122-159 98-135 (146)
82 1use_A VAsp, vasodilator-stimu 53.8 33 0.0011 22.4 5.2 33 130-174 9-41 (45)
83 2xdj_A Uncharacterized protein 53.7 35 0.0012 24.4 5.9 20 136-155 24-43 (83)
84 1s1c_X RHO-associated, coiled- 53.5 49 0.0017 23.3 6.5 42 123-166 4-45 (71)
85 2zqm_A Prefoldin beta subunit 53.1 43 0.0015 23.7 6.4 34 51-84 9-42 (117)
86 2jee_A YIIU; FTSZ, septum, coi 52.4 63 0.0021 23.3 8.6 63 37-103 9-78 (81)
87 3m91_A Proteasome-associated A 51.6 40 0.0014 22.2 5.5 39 50-88 11-49 (51)
88 3oa7_A Head morphogenesis prot 51.4 34 0.0012 28.7 6.2 35 120-154 32-66 (206)
89 3a7p_A Autophagy protein 16; c 51.0 93 0.0032 24.8 10.1 30 111-140 96-125 (152)
90 3fpp_A Macrolide-specific effl 50.0 55 0.0019 26.9 7.4 17 161-177 133-149 (341)
91 3mq9_A Bone marrow stromal ant 49.8 1.3E+02 0.0043 26.1 14.1 110 47-181 358-468 (471)
92 3sjb_C Golgi to ER traffic pro 49.5 21 0.0007 26.5 4.2 34 147-180 47-80 (93)
93 3s9g_A Protein hexim1; cyclin 49.5 81 0.0028 23.7 8.7 23 155-177 64-86 (104)
94 2w6b_A RHO guanine nucleotide 49.1 53 0.0018 22.3 5.8 40 57-101 5-44 (56)
95 1ses_A Seryl-tRNA synthetase; 48.9 1.3E+02 0.0044 26.7 10.1 28 115-142 32-59 (421)
96 3vp9_A General transcriptional 48.9 48 0.0016 24.4 6.1 45 38-85 40-84 (92)
97 3mq7_A Bone marrow stromal ant 48.8 91 0.0031 24.1 10.0 12 162-173 91-102 (121)
98 4fla_A Regulation of nuclear P 48.4 96 0.0033 24.2 9.8 105 52-167 29-142 (152)
99 2lw1_A ABC transporter ATP-bin 47.9 55 0.0019 22.9 6.2 52 116-167 20-74 (89)
100 3jsv_C NF-kappa-B essential mo 47.2 84 0.0029 23.2 8.5 74 86-159 15-88 (94)
101 3viq_A SWI5-dependent recombin 47.1 37 0.0013 25.9 5.4 61 60-147 5-65 (122)
102 1gd2_E Transcription factor PA 46.9 33 0.0011 23.8 4.7 10 67-76 55-64 (70)
103 1sjj_A Actinin; 3-helix bundle 46.9 1.8E+02 0.0063 27.1 12.1 38 59-96 408-445 (863)
104 3qne_A Seryl-tRNA synthetase, 46.6 77 0.0026 29.2 8.5 29 116-144 38-66 (485)
105 3bas_A Myosin heavy chain, str 46.3 75 0.0026 22.4 9.8 46 92-140 12-57 (89)
106 1fxk_C Protein (prefoldin); ar 46.3 43 0.0015 24.6 5.7 43 126-168 2-44 (133)
107 3a7o_A Autophagy protein 16; c 45.5 80 0.0027 22.5 7.8 58 53-131 9-66 (75)
108 2dq0_A Seryl-tRNA synthetase; 45.5 66 0.0023 29.0 7.7 26 123-148 36-61 (455)
109 2y39_A Nickel and cobalt resis 44.5 34 0.0012 26.3 4.8 64 37-100 30-97 (118)
110 4dk0_A Putative MACA; alpha-ha 44.0 41 0.0014 27.9 5.7 24 158-181 131-154 (369)
111 2w83_C C-JUN-amino-terminal ki 43.6 88 0.003 22.4 7.6 53 113-165 11-63 (77)
112 1hjb_A Ccaat/enhancer binding 43.4 85 0.0029 22.6 6.7 33 144-179 41-73 (87)
113 1ci6_A Transcription factor AT 43.2 71 0.0024 21.3 5.9 20 160-179 41-60 (63)
114 2v66_B Nuclear distribution pr 43.1 1E+02 0.0036 23.2 8.4 51 69-119 59-109 (111)
115 2dq3_A Seryl-tRNA synthetase; 42.9 65 0.0022 28.7 7.2 30 114-143 71-100 (425)
116 3qne_A Seryl-tRNA synthetase, 42.0 87 0.003 28.8 8.1 20 129-148 44-63 (485)
117 1gu4_A CAAT/enhancer binding p 41.7 88 0.003 22.0 6.4 37 140-179 37-73 (78)
118 3ni0_A Bone marrow stromal ant 40.7 56 0.0019 24.5 5.4 24 156-179 67-90 (99)
119 2nrj_A HBL B protein; enteroto 40.3 1.3E+02 0.0045 26.0 8.6 123 59-181 120-275 (346)
120 3fx0_A NF-kappa-B essential mo 40.1 72 0.0025 23.7 5.9 40 141-180 40-79 (96)
121 3lss_A Seryl-tRNA synthetase; 40.1 2.2E+02 0.0075 26.1 10.4 31 116-146 42-72 (484)
122 2xv5_A Lamin-A/C; structural p 39.3 95 0.0033 21.6 7.8 42 125-166 5-46 (74)
123 1uii_A Geminin; human, DNA rep 38.9 53 0.0018 23.8 4.9 39 50-88 41-79 (83)
124 1t3j_A Mitofusin 1; coiled coi 38.2 1E+02 0.0036 22.7 6.5 48 80-127 40-87 (96)
125 2dq3_A Seryl-tRNA synthetase; 37.3 99 0.0034 27.5 7.5 28 117-144 36-63 (425)
126 3k29_A Putative uncharacterize 36.9 1.7E+02 0.0057 23.7 9.0 32 105-136 100-131 (169)
127 3ra3_A P1C; coiled coil domain 36.5 12 0.00043 21.8 1.0 23 52-74 4-26 (28)
128 4etp_A Kinesin-like protein KA 36.3 1.2E+02 0.0042 26.7 7.9 33 122-154 7-39 (403)
129 2ve7_C Kinetochore protein NUF 36.0 26 0.00089 29.3 3.3 65 46-110 139-206 (250)
130 3mov_A Lamin-B1; LMNB1, B-type 36.0 1.2E+02 0.0042 21.9 8.6 28 83-110 26-53 (95)
131 2nrj_A HBL B protein; enteroto 35.9 2.1E+02 0.0073 24.7 12.9 23 151-173 171-193 (346)
132 3okq_A BUD site selection prot 35.8 1.5E+02 0.005 23.4 7.4 58 124-181 20-79 (141)
133 2dgc_A Protein (GCN4); basic d 35.0 69 0.0024 21.5 4.8 26 120-145 32-57 (63)
134 1gd2_E Transcription factor PA 35.0 97 0.0033 21.4 5.6 23 86-108 21-43 (70)
135 3tul_A Cell invasion protein S 34.6 65 0.0022 25.9 5.2 46 135-180 79-124 (158)
136 1wle_A Seryl-tRNA synthetase; 34.3 2.1E+02 0.0071 26.3 9.3 18 114-131 87-104 (501)
137 1go4_E MAD1 (mitotic arrest de 34.2 1.4E+02 0.0049 22.1 8.4 58 113-171 14-90 (100)
138 2vkl_A RV0948C/MT0975; helical 33.6 86 0.0029 22.1 5.3 36 112-147 13-48 (90)
139 2fxo_A Myosin heavy chain, car 33.4 1.5E+02 0.005 22.1 15.4 31 128-158 72-102 (129)
140 3vp9_A General transcriptional 33.2 1.2E+02 0.004 22.3 6.1 42 114-155 17-59 (92)
141 2wt7_A Proto-oncogene protein 32.9 1.1E+02 0.0036 20.2 7.0 37 49-85 24-60 (63)
142 1s94_A S-syntaxin; three helix 32.8 1.6E+02 0.0056 22.4 11.7 98 68-179 42-149 (180)
143 1x8y_A Lamin A/C; structural p 32.2 1.3E+02 0.0044 21.1 8.4 57 82-141 16-72 (86)
144 3s4r_A Vimentin; alpha-helix, 31.7 1.4E+02 0.0048 21.3 9.3 14 163-176 77-90 (93)
145 2q6q_A Spindle POLE BODY compo 31.6 92 0.0031 22.1 5.0 45 66-114 7-51 (74)
146 3mq9_A Bone marrow stromal ant 30.8 2.6E+02 0.0088 24.1 11.9 18 138-155 396-413 (471)
147 1m1j_C Fibrinogen gamma chain; 30.7 2.7E+02 0.0094 25.0 9.3 73 69-151 48-131 (409)
148 4b6x_A AVRRPS4, avirulence pro 30.7 1.5E+02 0.0052 21.6 6.2 14 141-154 38-51 (90)
149 1jnm_A Proto-oncogene C-JUN; B 30.3 72 0.0025 20.9 4.2 30 47-76 28-57 (62)
150 2d8d_A Aroag, phospho-2-dehydr 30.3 1E+02 0.0036 21.1 5.3 35 113-147 5-39 (90)
151 2d4x_A Flagellar HOOK-associat 30.3 2.1E+02 0.0071 22.8 8.7 75 102-176 10-87 (248)
152 4dk0_A Putative MACA; alpha-ha 29.8 2.3E+02 0.008 23.2 10.0 15 37-51 66-80 (369)
153 3m9b_A Proteasome-associated A 29.3 56 0.0019 28.0 4.3 34 94-130 61-94 (251)
154 1wlq_A Geminin; coiled-coil; 2 29.2 83 0.0028 22.8 4.6 39 49-87 32-70 (83)
155 1m1j_B Fibrinogen beta chain; 29.2 3.4E+02 0.012 24.9 12.3 14 68-81 99-112 (464)
156 3ra3_B P2F; coiled coil domain 29.0 34 0.0012 20.0 2.0 21 61-81 6-26 (28)
157 2zqm_A Prefoldin beta subunit 28.5 1.5E+02 0.0051 20.8 6.0 16 160-175 74-89 (117)
158 3fpp_A Macrolide-specific effl 28.3 2.3E+02 0.0079 23.0 7.8 11 39-49 67-77 (341)
159 3vlc_E Golgi to ER traffic pro 28.1 26 0.00087 26.0 1.7 35 147-181 54-88 (94)
160 3u06_A Protein claret segregat 27.8 1.7E+02 0.0058 26.0 7.4 52 37-88 6-57 (412)
161 1bb1_B Designed, thermostable 27.8 84 0.0029 19.2 3.7 24 65-88 5-28 (36)
162 4e61_A Protein BIM1; EB1-like 27.7 1.9E+02 0.0066 21.6 6.6 41 63-107 5-52 (106)
163 1wt6_A Myotonin-protein kinase 27.6 1.7E+02 0.0059 21.0 8.2 53 123-176 19-72 (81)
164 3q4f_C DNA repair protein XRCC 27.4 50 0.0017 27.2 3.5 24 41-64 161-184 (186)
165 1ybz_A Chorismate mutase; cons 27.3 1.2E+02 0.0042 21.5 5.3 35 113-147 19-53 (91)
166 1deb_A APC protein, adenomatou 27.3 51 0.0018 22.1 2.9 19 155-173 9-27 (54)
167 2wt7_B Transcription factor MA 27.1 1.3E+02 0.0045 21.8 5.4 40 48-87 48-87 (90)
168 2py8_A Hypothetical protein RB 26.6 1.6E+02 0.0055 23.2 6.2 59 49-109 56-115 (147)
169 3rmi_A Chorismate mutase prote 26.1 1.2E+02 0.0042 22.2 5.3 35 113-147 14-48 (114)
170 1deq_A Fibrinogen (alpha chain 26.0 3.7E+02 0.013 24.4 13.1 106 50-182 54-160 (390)
171 1ecm_A Endo-oxabicyclic transi 25.9 1.3E+02 0.0045 21.4 5.3 35 113-147 7-41 (109)
172 3a7p_A Autophagy protein 16; c 25.6 2.5E+02 0.0087 22.3 9.2 43 110-152 67-109 (152)
173 3ret_A Salicylate biosynthesis 25.2 87 0.003 22.2 4.1 38 109-146 6-43 (101)
174 2wt7_B Transcription factor MA 25.1 1.3E+02 0.0045 21.8 5.1 31 39-69 53-83 (90)
175 1t2k_D Cyclic-AMP-dependent tr 25.0 1.4E+02 0.005 19.3 5.8 35 50-84 24-58 (61)
176 1bg1_A Protein (transcription 24.8 4.5E+02 0.016 24.9 10.1 83 66-152 24-106 (596)
177 3pwx_A Putative flagellar HOOK 24.6 2.8E+02 0.0096 22.4 8.8 77 102-178 12-91 (239)
178 1yvl_A Signal transducer and a 24.4 4.5E+02 0.015 25.4 10.0 80 67-152 149-228 (683)
179 1t3j_A Mitofusin 1; coiled coi 24.0 2.2E+02 0.0075 21.0 8.1 40 133-172 48-87 (96)
180 3v47_C Flagellin; innate immun 23.9 3.5E+02 0.012 24.6 8.7 78 101-178 8-88 (425)
181 1lwu_C Fibrinogen gamma chain; 23.7 2E+02 0.0068 25.1 6.9 56 98-156 2-57 (323)
182 4ad8_A DNA repair protein RECN 23.4 3.8E+02 0.013 23.6 14.3 40 135-174 288-327 (517)
183 1nkp_B MAX protein, MYC proto- 23.4 91 0.0031 21.3 3.8 7 82-88 25-31 (83)
184 4etp_A Kinesin-like protein KA 23.1 2E+02 0.0069 25.4 6.9 30 118-147 10-39 (403)
185 2w6b_A RHO guanine nucleotide 22.6 98 0.0033 21.0 3.6 21 160-180 14-34 (56)
186 1abz_A Alpha-T-alpha, ATA; de 22.1 39 0.0013 21.2 1.5 10 75-84 9-18 (40)
187 2a3d_A Protein (de novo three- 22.1 2E+02 0.0069 19.9 6.3 36 141-176 28-71 (73)
188 3u06_A Protein claret segregat 22.1 3E+02 0.01 24.4 7.9 35 115-149 7-41 (412)
189 3iv1_A Tumor susceptibility ge 22.0 2.2E+02 0.0075 20.2 9.2 42 115-156 15-59 (78)
190 4emc_A Monopolin complex subun 21.7 3E+02 0.01 22.6 7.2 37 116-152 11-47 (190)
191 1ses_A Seryl-tRNA synthetase; 21.4 4.2E+02 0.014 23.3 10.5 18 115-132 68-85 (421)
192 2lf0_A Uncharacterized protein 21.3 2.4E+02 0.0083 21.7 6.1 33 151-183 31-63 (123)
193 2aze_B Transcription factor E2 21.2 1.8E+02 0.0062 21.3 5.3 40 113-152 8-47 (106)
194 3etv_A Protein transport prote 20.9 1.2E+02 0.004 27.3 4.9 29 118-146 9-37 (355)
195 1fxk_A Prefoldin; archaeal pro 20.9 2.1E+02 0.0073 19.7 6.0 24 118-141 8-31 (107)
196 1s94_A S-syntaxin; three helix 20.8 1.3E+02 0.0044 23.0 4.6 35 92-126 34-68 (180)
197 3vkg_A Dynein heavy chain, cyt 20.7 9.8E+02 0.034 27.3 19.7 41 39-79 1908-1951(3245)
198 2j5u_A MREC protein; bacterial 20.6 48 0.0016 27.6 2.2 14 165-178 45-58 (255)
199 2dgc_A Protein (GCN4); basic d 20.3 1.2E+02 0.004 20.3 3.7 26 47-72 36-61 (63)
200 3hhm_B NISH2 P85alpha; PI3KCA, 20.1 4.4E+02 0.015 23.1 9.5 66 38-124 172-253 (373)
201 1gk6_A Vimentin; intermediate 20.0 1.9E+02 0.0066 18.9 5.3 36 38-73 11-46 (59)
No 1
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=96.58 E-value=0.053 Score=41.22 Aligned_cols=90 Identities=18% Similarity=0.327 Sum_probs=66.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchh
Q 030034 36 PMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEP 115 (184)
Q Consensus 36 p~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~ 115 (184)
-..+|..|..-...|..+..||-+|......++.++..-+ . |.|.|+.....
T Consensus 15 ~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk--------------~--------------KyE~E~~~r~~ 66 (119)
T 3ol1_A 15 GDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR--------------E--------------KLQEEMLQREE 66 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H--------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H--------------hhHHHHHHHHH
Confidence 3567888888888888888888888776665554443332 1 33333333445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEA 153 (184)
Q Consensus 116 ~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~ 153 (184)
+.+++.-++.++......|-+|-++|++|+.||.=++.
T Consensus 67 ~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 67 AENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66889999999999999999999999999999886653
No 2
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=95.61 E-value=0.1 Score=37.82 Aligned_cols=50 Identities=20% Similarity=0.349 Sum_probs=44.4
Q ss_pred hhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 103 GLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (184)
Q Consensus 103 ~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~ 152 (184)
-.|.|.|+.-...+-+|+.-++.++..+.-.|-+|-++|.+|+.||.=++
T Consensus 34 k~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 34 REKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36778888888889999999999999999999999999999999987543
No 3
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.17 E-value=0.2 Score=44.88 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=45.9
Q ss_pred hhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhh-hcchhHHHHHHHHHHHHHHHHHHH
Q 030034 56 ENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVEL-RASEPVRAEVVQLRAEVQKLNSSR 134 (184)
Q Consensus 56 dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEael-Ra~e~~k~El~Q~r~e~q~L~~~R 134 (184)
.|..+-++...++.++...+.++.+....+...+.+-+...- .......++ +..+-+++++.++..+.+++...-
T Consensus 450 ~~e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 525 (597)
T 3oja_B 450 GNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLR----RYRLPKDGLARSSDNLNKVFTHLKERQAFKLRET 525 (597)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----hcCccccccCCHHHHHHHHHHHHHhhhhhhHHHH
Confidence 555566666666666776776666666666655555332221 111111111 112456666666666666666666
Q ss_pred HHHHHHHHHHHHHHHH
Q 030034 135 QELTTQIKGLTKDVNR 150 (184)
Q Consensus 135 QELt~qvq~ltqeL~r 150 (184)
|.+..+++...+++..
T Consensus 526 ~~~~~~~~~~~~~~~~ 541 (597)
T 3oja_B 526 QARRTEADAKQKETED 541 (597)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhcchhh
Confidence 6666666555555543
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.09 E-value=1.2 Score=36.94 Aligned_cols=61 Identities=11% Similarity=0.148 Sum_probs=33.2
Q ss_pred hHHhHHHHHHhhhhhhhhhhcc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 92 KEAHTRELFDRGLKLEVELRAS------EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (184)
Q Consensus 92 ~e~q~Rel~ek~~KmEaelRa~------e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~ 152 (184)
.+..+..+-.++.+.+..+-++ +++..|+..+..++..|...=.++..++..+..++..+.
T Consensus 65 ~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~ 131 (256)
T 3na7_A 65 NEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLK 131 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666655433 345556655555555555555555555555544444433
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.01 E-value=0.12 Score=51.65 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 030034 136 ELTTQIKGLTKDVNRLEAE 154 (184)
Q Consensus 136 ELt~qvq~ltqeL~r~~~d 154 (184)
+|..+|..|++|.++++..
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq 1038 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTE 1038 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555543
No 6
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.84 E-value=1 Score=40.34 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHhhhh
Q 030034 43 IEIQRREMHRIISENRH 59 (184)
Q Consensus 43 La~Q~~EiqrLl~dNqR 59 (184)
+.....+|+.|-.+...
T Consensus 458 ~~~~~~~i~~l~~~~~~ 474 (597)
T 3oja_B 458 VNELRAEVQQLTNEQIQ 474 (597)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444333
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.70 E-value=1 Score=45.12 Aligned_cols=48 Identities=19% Similarity=0.181 Sum_probs=5.3
Q ss_pred HHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHH
Q 030034 52 RIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTREL 99 (184)
Q Consensus 52 rLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel 99 (184)
.|...|..|-..-..|++.|.....+...|...+..+....+.++-+|
T Consensus 918 ~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L 965 (1080)
T 2dfs_A 918 RYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL 965 (1080)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 334444444444444444444444444444433333333333333333
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=92.82 E-value=0.43 Score=47.69 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHH
Q 030034 39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIH 79 (184)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~ 79 (184)
++++|..-...+.++-..-..+-.....|++++..++.+++
T Consensus 862 L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~ 902 (1184)
T 1i84_S 862 KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ 902 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333333334444444444444444443
No 9
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=92.57 E-value=0.37 Score=32.22 Aligned_cols=43 Identities=19% Similarity=0.392 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHh
Q 030034 40 EEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLG 82 (184)
Q Consensus 40 Ee~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~ 82 (184)
|+++..-...+..|..-|.+|+++=-.-|++|...+.+|..|.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999998888774
No 10
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=91.83 E-value=0.49 Score=47.27 Aligned_cols=42 Identities=24% Similarity=0.315 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHH
Q 030034 40 EEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRL 81 (184)
Q Consensus 40 Ee~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l 81 (184)
+.++.....++..+-..=.++-.....|..++...+.++..+
T Consensus 856 ~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l 897 (1184)
T 1i84_S 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLL 897 (1184)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333333333333444444444443333
No 11
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=91.69 E-value=5 Score=33.20 Aligned_cols=114 Identities=15% Similarity=0.186 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHH--HhhhhhhhhhhcchhHH
Q 030034 40 EEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELF--DRGLKLEVELRASEPVR 117 (184)
Q Consensus 40 Ee~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~--ek~~KmEaelRa~e~~k 117 (184)
+.++..-..||..|-.+=..+.+..+.++.++...+.++..+...|..+++--+..--.+. -...-+++=-+-++.++
T Consensus 24 ~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~ 103 (256)
T 3na7_A 24 EPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAK 103 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 3444444556666666666666666666666666666666666666555443222111111 11222333334444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEA 153 (184)
Q Consensus 118 ~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~ 153 (184)
.++..+..++..+.....++...+..+...+.....
T Consensus 104 ~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~ 139 (256)
T 3na7_A 104 ERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEK 139 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555444444444444443
No 12
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=89.70 E-value=1.4 Score=32.15 Aligned_cols=44 Identities=20% Similarity=0.275 Sum_probs=33.0
Q ss_pred hhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 104 LKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (184)
Q Consensus 104 ~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqe 147 (184)
--|++||+|-..+..||-+++++.+.+.+-=+|--.+-+.|..|
T Consensus 17 SALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e 60 (81)
T 1wt6_A 17 EALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAH 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999888876444444444444333
No 13
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=88.66 E-value=1.4 Score=29.50 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 030034 129 KLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA 175 (184)
Q Consensus 129 ~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~ 175 (184)
.|.+-=+.|+.||..|+.|+.- ++.++...+.|-.|+
T Consensus 8 ~Lss~V~~L~~kVdqLssdV~a----------l~~~v~~ak~eA~RA 44 (52)
T 1jcd_A 8 QASSDAQTANAKADQASNDANA----------ARSDAQAAKDDAARA 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 3333334444455555444443 444555555555554
No 14
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=87.97 E-value=26 Score=39.44 Aligned_cols=79 Identities=18% Similarity=0.296 Sum_probs=42.6
Q ss_pred HHHhhhhhhhhhhcc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHH
Q 030034 99 LFDRGLKLEVELRAS---EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ----LIAMRADIDGIRSE 171 (184)
Q Consensus 99 l~ek~~KmEaelRa~---e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qq----ip~l~aEid~lrqE 171 (184)
+-.+-..-|+||-.. +|+|++|.++..+..+-.+.=++...+++.+...|+.++.+-.. .-.|+.|++....=
T Consensus 1992 i~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~k 2071 (3245)
T 3vkg_A 1992 IAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNK 2071 (3245)
T ss_dssp HHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444456666655 47788888887776665555555555555555555555544322 23345555555555
Q ss_pred HHHhhh
Q 030034 172 LVEARF 177 (184)
Q Consensus 172 lqr~Ra 177 (184)
+.+|-.
T Consensus 2072 l~rA~~ 2077 (3245)
T 3vkg_A 2072 VDRSIA 2077 (3245)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 15
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=87.28 E-value=7.7 Score=29.11 Aligned_cols=71 Identities=15% Similarity=0.319 Sum_probs=44.7
Q ss_pred hhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhc
Q 030034 104 LKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEIR 180 (184)
Q Consensus 104 ~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (184)
++|+.++. .++..+...+.--..-.+.|+.+-+.+.++.+++.-+.--. -.|.+.|++|+.||--.+..+|
T Consensus 37 a~l~leld---n~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r---~dLE~~iesL~eEl~FLKk~he 107 (119)
T 3ol1_A 37 ARVEVERD---NLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLAR---LDLERKVESLQEEIAFLKKLHE 107 (119)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 45555543 56666666776666777889999999999999876543211 2244555566666555555544
No 16
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=86.38 E-value=0.99 Score=27.46 Aligned_cols=27 Identities=33% Similarity=0.398 Sum_probs=20.6
Q ss_pred hhHHHHHHHHhhHHHHHHHhhhhhhhh
Q 030034 63 DNTHLQRELTASKDEIHRLGQIIPKLR 89 (184)
Q Consensus 63 thvaLrqeL~aaq~El~~l~~~i~~i~ 89 (184)
...+|+||+++.+.|+-.|.--|+.++
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888877766654
No 17
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=86.11 E-value=7.5 Score=27.80 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Q 030034 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEAR 176 (184)
Q Consensus 116 ~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~R 176 (184)
+..|+.++.....+....|++|..+...+.++-+.+... .+|.+..+..|...+
T Consensus 19 ~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q-------l~eaEe~~~~L~~~K 72 (89)
T 3bas_A 19 QLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS-------MKQLEDKVEELLSKN 72 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHH
Confidence 556777777777777777777777777777776655544 444444444444333
No 18
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=86.06 E-value=7.3 Score=27.90 Aligned_cols=68 Identities=16% Similarity=0.356 Sum_probs=48.7
Q ss_pred hhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Q 030034 104 LKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARF 177 (184)
Q Consensus 104 ~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Ra 177 (184)
.+++.++. .++..+...+.--..=.+.|+.+-+.+.+|.+++--+.-.. -.|.+.|++|..||.-+|.
T Consensus 17 ~~l~~e~d---n~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r---~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 17 ARVEVERD---NLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLAR---LDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH---HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHhh
Confidence 45666543 47777777777777778889999999999988876554322 3466778888888876553
No 19
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=86.04 E-value=4.6 Score=30.67 Aligned_cols=59 Identities=10% Similarity=0.151 Sum_probs=48.6
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 030034 110 LRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGI 168 (184)
Q Consensus 110 lRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~l 168 (184)
|-|+-++.+||.+.+.++..|...-++|...|..|.+|=.=.-+-+..|-.|-.+...+
T Consensus 3 ~~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~~~ 61 (106)
T 4e61_A 3 LGSLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQDL 61 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677899999999999999999999999999999998666667777766666555443
No 20
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=85.81 E-value=6.6 Score=30.03 Aligned_cols=73 Identities=22% Similarity=0.349 Sum_probs=48.3
Q ss_pred hhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 030034 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDG 167 (184)
Q Consensus 88 i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~ 167 (184)
...++|..|..|+ +.++.+|.|+..+..|++..+. .|.++|-.|..||.-.+...|+ ...|.+.
T Consensus 9 ~~d~rD~~Ie~Lk----------reie~lk~ele~l~~E~q~~v~---ql~~~i~~Le~eL~e~r~~~q~---a~~e~e~ 72 (120)
T 3i00_A 9 NKDEKDHLIERLY----------REISGLKAQLENMKTESQRVVL---QLKGHVSELEADLAEQQHLRQQ---AADDCEF 72 (120)
T ss_dssp -CCTHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred CCCcHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 5567776665544 2244677777777777776654 5888888899898887755444 4556667
Q ss_pred HHHHHHHhh
Q 030034 168 IRSELVEAR 176 (184)
Q Consensus 168 lrqElqr~R 176 (184)
|+.|+..++
T Consensus 73 Lr~e~~~l~ 81 (120)
T 3i00_A 73 LRAELDELR 81 (120)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776554
No 21
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=84.60 E-value=4.6 Score=29.16 Aligned_cols=69 Identities=19% Similarity=0.380 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHH
Q 030034 47 RREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE 126 (184)
Q Consensus 47 ~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e 126 (184)
-.|+..|+.+|..|-+|+-||- .++.+| +.++ |.+-.|-..++.|
T Consensus 8 gkevEnLi~EN~eLl~TKNaLn----vvk~DL------------------------I~rv-------dELt~E~e~l~~E 52 (77)
T 2w83_C 8 GREVENLILENTQLLETKNALN----IVKNDL------------------------IAKV-------DELTCEKDVLQGE 52 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHH------------------------HHHH-------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH----HHHHHH------------------------HHHH-------HHHHhHHHHHHHH
Confidence 3678888888888888887762 233222 1111 2344455556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 127 VQKLNSSRQELTTQIKGLTKDVNR 150 (184)
Q Consensus 127 ~q~L~~~RQELt~qvq~ltqeL~r 150 (184)
+..+..+++-+..++..+.+||.|
T Consensus 53 l~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 53 LEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 677777777777777777777665
No 22
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=84.27 E-value=11 Score=28.32 Aligned_cols=52 Identities=19% Similarity=0.257 Sum_probs=25.4
Q ss_pred HHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 93 EAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (184)
Q Consensus 93 e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqe 147 (184)
+.+|+.+-+.+.+|+..+...+..|.|+. ....+|...+.+|..++++-+.-
T Consensus 12 e~E~~~~~eel~~lke~l~k~e~~r~ele---~~~~~l~~Ek~~L~~qL~~E~~~ 63 (129)
T 2fxo_A 12 EKEMASMKEEFTRLKEALEKSEARRKELE---EKMVSLLQEKNDLQLQVQAEQDN 63 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555556555555555555542 22334444444444444444333
No 23
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=84.25 E-value=12 Score=28.53 Aligned_cols=91 Identities=18% Similarity=0.221 Sum_probs=55.4
Q ss_pred HhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 62 DDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQI 141 (184)
Q Consensus 62 athvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qv 141 (184)
.+=+-|+.+|.....+-..|-.....-+.|.-.+|-+|.+++..-|..|. .|+.-..|+..+|+.=. +.|+.--
T Consensus 13 ~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~---~Lqq~fsq~q~~vq~qL---~~Lt~~R 86 (112)
T 1x79_B 13 LMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLE---ELQQGLSQAKRDVQEQM---AVLMQSR 86 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 33467788888888888888888888899999999999999999997775 45555555555544311 2333333
Q ss_pred HHHHHHHHHHHHhhhhH
Q 030034 142 KGLTKDVNRLEAENKQL 158 (184)
Q Consensus 142 q~ltqeL~r~~~d~qqi 158 (184)
..+..+|.+++.||..+
T Consensus 87 e~V~~eL~rLQ~eNd~L 103 (112)
T 1x79_B 87 EQVSEELVRLQKDNDSL 103 (112)
T ss_dssp HHHHTC-----------
T ss_pred HHHHHHHHHHHhhccch
Confidence 34445555555555443
No 24
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=83.45 E-value=12 Score=28.13 Aligned_cols=88 Identities=15% Similarity=0.252 Sum_probs=44.8
Q ss_pred HHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 69 RELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDV 148 (184)
Q Consensus 69 qeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL 148 (184)
.+|..++.||..++..|.++++|-+. +--....||+-|.-.+.- -..+++.+...=.+|-++++.+..|+
T Consensus 31 ~~l~~~k~Ei~elrr~iq~L~~el~~----l~~~~~sLE~~l~e~e~~------~~~~l~~~q~~i~~lE~eL~~~r~em 100 (131)
T 3tnu_A 31 ELVQSGKSEISELRRTMQNLEIELQS----QLSMKASLENSLEETKGR------YCMQLAQIQEMIGSVEEQLAQLRCEM 100 (131)
T ss_dssp ----------CHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777666543 333345566555544431 12233333444445666777777777
Q ss_pred HHHHHhhhhHHHHHHHHH
Q 030034 149 NRLEAENKQLIAMRADID 166 (184)
Q Consensus 149 ~r~~~d~qqip~l~aEid 166 (184)
++..-|-|.+-.+|.=+|
T Consensus 101 ~~ql~EYq~Ll~vKl~Ld 118 (131)
T 3tnu_A 101 EQQNQEYKILLDVKTRLE 118 (131)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777665433
No 25
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=83.35 E-value=1.4 Score=37.93 Aligned_cols=44 Identities=20% Similarity=0.403 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhh
Q 030034 40 EEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQ 83 (184)
Q Consensus 40 Ee~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~ 83 (184)
|+++..-..++..|-..|.+|+++.-.+++||...+.||.+|..
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88888889999999999999999999999999999999999864
No 26
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.95 E-value=13 Score=27.92 Aligned_cols=88 Identities=20% Similarity=0.345 Sum_probs=48.9
Q ss_pred HHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 69 RELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDV 148 (184)
Q Consensus 69 qeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL 148 (184)
.+|..++.||..++..|.++++|-+. +--....||+-|.-.+.- -..+++.+...=..|-++++.+..|+
T Consensus 29 ~~l~~~k~Ei~elrr~iq~L~~el~~----l~~~~~~LE~~l~e~e~~------~~~~l~~~q~~i~~lE~eL~~~r~e~ 98 (129)
T 3tnu_B 29 DDLRNTKHEISEMNRMIQRLRAEIDN----VKKQCANLQNAIADAEQR------GELALKDARNKLAELEEALQKAKQDM 98 (129)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45667788888888888777766543 333445566655544431 11223333333345666667777777
Q ss_pred HHHHHhhhhHHHHHHHHH
Q 030034 149 NRLEAENKQLIAMRADID 166 (184)
Q Consensus 149 ~r~~~d~qqip~l~aEid 166 (184)
++..-|-|.+-.+|-=+|
T Consensus 99 ~~ql~EYq~LlnvKl~Ld 116 (129)
T 3tnu_B 99 ARLLREYQELMNTKLALD 116 (129)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777776665443
No 27
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=82.85 E-value=6.2 Score=31.86 Aligned_cols=39 Identities=10% Similarity=0.181 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhcc
Q 030034 143 GLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEIRY 181 (184)
Q Consensus 143 ~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 181 (184)
.|...+..-+.|..+|-++..||..|++++...|..+..
T Consensus 100 EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~ 138 (175)
T 3lay_A 100 EYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDV 138 (175)
T ss_dssp HHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344567778888888888888888887776643
No 28
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=82.33 E-value=3.7 Score=31.45 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=28.2
Q ss_pred HHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcc
Q 030034 75 KDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRAS 113 (184)
Q Consensus 75 q~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~ 113 (184)
+.|+.+|...+..|+.|.-..|..|-.++..||+||--.
T Consensus 21 kreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~ 59 (120)
T 3i00_A 21 YREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQ 59 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555556667788888999999999999887544
No 29
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=81.41 E-value=21 Score=29.31 Aligned_cols=54 Identities=17% Similarity=0.208 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHH----HHHHhhhhhhhhhhh
Q 030034 39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDE----IHRLGQIIPKLRADK 92 (184)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~E----l~~l~~~i~~i~ae~ 92 (184)
||..|..-..=+..|-..|.+|......+|--+..++.| +..|..-|..++..+
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~ 104 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIK 104 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566667777777777777766666666665 444444444444333
No 30
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=79.58 E-value=18 Score=27.54 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=20.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030034 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENK 156 (184)
Q Consensus 113 ~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~q 156 (184)
+.-+++-+.=-+.|-..=-+.|..+.++.+.|..+|..++..++
T Consensus 64 I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 64 VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444555555555555555555444443
No 31
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=79.23 E-value=25 Score=28.86 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHh
Q 030034 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE-NKQLIAMRADIDGIRSELVEA 175 (184)
Q Consensus 118 ~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d-~qqip~l~aEid~lrqElqr~ 175 (184)
+||.++..-...|...-..|...+..+...+...+++ +.++-.|..||..++.+...+
T Consensus 49 ~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l 107 (189)
T 2v71_A 49 AQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQL 107 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444333333 334444555555555444433
No 32
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=79.05 E-value=11 Score=28.45 Aligned_cols=48 Identities=29% Similarity=0.443 Sum_probs=34.8
Q ss_pred hHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 95 HTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLT 145 (184)
Q Consensus 95 q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~lt 145 (184)
+-|.++++..|-|.|+ +.++.++..++.......++-+||..+.+.|.
T Consensus 5 e~~~~~~~~~~~e~e~---~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq 52 (125)
T 1joc_A 5 ERRALLERCLKGEGEI---EKLQTKVLELQRKLDNTTAAVQELGRENQSLQ 52 (125)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 4578999999999974 67788888888777776666666655544443
No 33
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=78.68 E-value=9.6 Score=27.02 Aligned_cols=45 Identities=22% Similarity=0.426 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 030034 123 LRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDG 167 (184)
Q Consensus 123 ~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~ 167 (184)
+..++..|.....||..+++.+.+++.+...+-+.+..+++.++.
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek 46 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEK 46 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999888888888887764
No 34
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=78.68 E-value=9.4 Score=26.50 Aligned_cols=43 Identities=28% Similarity=0.506 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 030034 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158 (184)
Q Consensus 116 ~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqi 158 (184)
+|+=|.-.-+-||.|..+-.-|+.++.-|.++|+++++++-++
T Consensus 18 vK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 18 LKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 6677777788899999999999999999999999999988765
No 35
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=78.65 E-value=5.8 Score=31.70 Aligned_cols=41 Identities=27% Similarity=0.350 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhh
Q 030034 135 QELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFE 178 (184)
Q Consensus 135 QELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa 178 (184)
+.|+++...++.|++++..++|-.-+.+ .+|+.+|--.|.+
T Consensus 90 a~l~~~~~~LeAE~aKLeEekQIseASR---qgLrRDLeASReA 130 (146)
T 2xnx_M 90 DQLSSEKEQLTIEKAKLEEEKQISDASR---QSLRRDLDASREA 130 (146)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTTTC--------------------
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHH
Confidence 3344445556666666666666443333 5666666655554
No 36
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=78.20 E-value=19 Score=27.44 Aligned_cols=60 Identities=20% Similarity=0.204 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 030034 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 114 e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (184)
+.+-.++.|++.+..++...|++|....+.-+.| -..||-.|..-+.+-.+.|.-+|.+|
T Consensus 9 ~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~------~k~qV~~L~~~~q~sE~~L~~Lqq~f 68 (112)
T 1x79_B 9 KKLQLMLRQANDQLEKTMKDKQELEDFIKQSSED------SSHQISALVLRAQASEILLEELQQGL 68 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677788888888888888887775554443 23455555555555555555555444
No 37
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=78.05 E-value=5.3 Score=26.64 Aligned_cols=34 Identities=12% Similarity=0.189 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030034 121 VQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE 154 (184)
Q Consensus 121 ~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d 154 (184)
.|+-++|+.|..-=..|+.+|..+..|++-++.|
T Consensus 7 ~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~e 40 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANAARSDAQAAKDD 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444555555555444443
No 38
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=77.40 E-value=7.9 Score=28.14 Aligned_cols=54 Identities=15% Similarity=0.263 Sum_probs=41.8
Q ss_pred hhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 030034 107 EVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIA 160 (184)
Q Consensus 107 EaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~ 160 (184)
+|==|+-+.=|.--.+....+..|...-..|..+|+.|++|+..+..-..++|.
T Consensus 25 ~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 25 IAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 445556666677777788888899999999999999999999999888888886
No 39
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=75.87 E-value=14 Score=27.89 Aligned_cols=51 Identities=31% Similarity=0.485 Sum_probs=31.5
Q ss_pred HHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 030034 98 ELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158 (184)
Q Consensus 98 el~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqi 158 (184)
+|+..-+.||.. +.++-.|-..|....+...++|+.|..+|.++..+||.+
T Consensus 34 ELIqEYl~LE~~----------~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L 84 (104)
T 3s9g_A 34 ELIKEYLELEKS----------LSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQL 84 (104)
T ss_dssp HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 456666666643 344445555555556666777777777777777777653
No 40
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=75.57 E-value=8 Score=27.53 Aligned_cols=54 Identities=15% Similarity=0.263 Sum_probs=39.3
Q ss_pred hhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 030034 107 EVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIA 160 (184)
Q Consensus 107 EaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~ 160 (184)
+|==|+-+.=|.--......+..|...-..|..+|..|++|+..++.=.-|+|.
T Consensus 25 ~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q~p~ 78 (78)
T 1gu4_A 25 IAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 444556666667777777888888888888888888888888888877777773
No 41
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=75.15 E-value=19 Score=26.24 Aligned_cols=81 Identities=11% Similarity=0.081 Sum_probs=44.7
Q ss_pred hHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 030034 92 KEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSE 171 (184)
Q Consensus 92 ~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqE 171 (184)
+|.++-.|=-+...||..|+.++. +.-.++..+...-..|.++++.+..|+++...+-|.+..+|.-+| .|
T Consensus 10 ~~~~~~~Lq~~~~~LE~~l~e~E~------~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le---~E 80 (95)
T 3mov_A 10 RENLYFQGQKESRACLERIQELED------LLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALD---ME 80 (95)
T ss_dssp --------CCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 344444554555666666665554 233344455555556677777777788777777777777776554 45
Q ss_pred HHHhhhhhcc
Q 030034 172 LVEARFEIRY 181 (184)
Q Consensus 172 lqr~Raa~Ey 181 (184)
|---|.-+|-
T Consensus 81 IatYrkLLEG 90 (95)
T 3mov_A 81 ISAYRKLLEG 90 (95)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHcc
Confidence 5555554443
No 42
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=74.16 E-value=35 Score=30.81 Aligned_cols=48 Identities=17% Similarity=0.199 Sum_probs=31.1
Q ss_pred hhhhhhcchhHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHH
Q 030034 106 LEVELRASEPVRAEVVQLRAEVQKLNSSRQEL---------------TTQIKGLTKDVNRLEA 153 (184)
Q Consensus 106 mEaelRa~e~~k~El~Q~r~e~q~L~~~RQEL---------------t~qvq~ltqeL~r~~~ 153 (184)
+..+|+-.|.+-.||.++.++++.|...-|+. +.+.+.|..++.++.+
T Consensus 36 V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~ 98 (409)
T 1m1j_C 36 TDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYEN 98 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 55566666777777777777777777666655 4555556666655544
No 43
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=73.55 E-value=29 Score=26.76 Aligned_cols=60 Identities=10% Similarity=0.258 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhHHHHHHHHHHHHHHHHHh
Q 030034 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE----AENKQLIAMRADIDGIRSELVEA 175 (184)
Q Consensus 116 ~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~----~d~qqip~l~aEid~lrqElqr~ 175 (184)
+=.|+.+++.++..|...-+++..++..|..||..++ .-.+.+-.++.+++.|+.++.++
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555444444555555555544433 22233444444444444444444
No 44
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=72.88 E-value=26 Score=25.99 Aligned_cols=84 Identities=18% Similarity=0.326 Sum_probs=40.6
Q ss_pred HHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 67 LQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTK 146 (184)
Q Consensus 67 LrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltq 146 (184)
|+.-|..|..=|......|..++. ...+.+..++.+--|.+.+ +-.+.+..-=|++=.++...+++|..++..+.+
T Consensus 7 L~~~L~~aEeaL~~kq~~id~lke-~~~q~~~~~E~i~vLk~Qv---~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~ 82 (94)
T 3jsv_C 7 LRQQLQQAEEALVAKQELIDKLKE-EAEQHKIVMETVPVLKAQA---DIYKADFQAERHAREKLVEKKEYLQEQLEQLQR 82 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 444455555444444444444443 3333444444444444432 344555555566666666666666666666666
Q ss_pred HHHHHHHh
Q 030034 147 DVNRLEAE 154 (184)
Q Consensus 147 eL~r~~~d 154 (184)
++.+++++
T Consensus 83 q~~~L~~~ 90 (94)
T 3jsv_C 83 EFNKLKVG 90 (94)
T ss_dssp TTC-----
T ss_pred HHHHHHHh
Confidence 65555544
No 45
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=72.76 E-value=15 Score=28.56 Aligned_cols=75 Identities=24% Similarity=0.318 Sum_probs=37.0
Q ss_pred HHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 67 LQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTK 146 (184)
Q Consensus 67 LrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltq 146 (184)
|+++|..||+=|+..-+....- -.-.+.|- ++++.|.-|....+++|...=+.|..++|...-
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTC-----------NqTV~tL~------~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~a 92 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATA-----------NHTVMALM------ASLDAEKAQGQKKVEELEGEITTLNHKLQDASA 92 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888887666543322211 11111111 245555555555555555444444455555555
Q ss_pred HHHHHHHhhhhH
Q 030034 147 DVNRLEAENKQL 158 (184)
Q Consensus 147 eL~r~~~d~qqi 158 (184)
++.+++.+++-+
T Consensus 93 e~erlr~~~~~~ 104 (121)
T 3mq7_A 93 EVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhhchhh
Confidence 555555554433
No 46
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=71.62 E-value=29 Score=25.93 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=26.9
Q ss_pred HHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 80 RLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTT 139 (184)
Q Consensus 80 ~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~ 139 (184)
.|-..|.++..-.+.++..+=.++..||++ |.+++.|+......-|+|..
T Consensus 61 ~LE~~l~e~e~~~~~~l~~~q~~i~~lE~e----------L~~~r~e~~~ql~EYq~Lln 110 (129)
T 3tnu_B 61 NLQNAIADAEQRGELALKDARNKLAELEEA----------LQKAKQDMARLLREYQELMN 110 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHHHH
Confidence 334445555555566666666666666654 44555555554444444443
No 47
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=71.44 E-value=24 Score=24.82 Aligned_cols=26 Identities=12% Similarity=0.146 Sum_probs=11.6
Q ss_pred hhhhhhhhHHhHHHHHHhhhhhhhhh
Q 030034 85 IPKLRADKEAHTRELFDRGLKLEVEL 110 (184)
Q Consensus 85 i~~i~ae~e~q~Rel~ek~~KmEael 110 (184)
+.++..--+.++..+=.++..+|++|
T Consensus 17 l~e~e~~~~~~~~~~q~~i~~lE~eL 42 (84)
T 1gk4_A 17 MREMEENFAVEAANYQDTIGRLQDEI 42 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444454433
No 48
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=71.17 E-value=14 Score=24.91 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=24.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (184)
Q Consensus 113 ~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~ 152 (184)
-.--+.+...+..+++.|.....+|..+|..|..|+.-+.
T Consensus 18 R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 18 RQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666666666666666666655443
No 49
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=70.96 E-value=27 Score=25.31 Aligned_cols=87 Identities=16% Similarity=0.272 Sum_probs=51.7
Q ss_pred ChhhhHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcch
Q 030034 35 HPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASE 114 (184)
Q Consensus 35 ~p~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e 114 (184)
...-.|+.+..-.++|.+-+..=..+.. ..=+ ..|. +=|..+-+.-+=+.+||-|+|++.
T Consensus 6 lFe~YE~df~~l~~~i~~kl~~i~~~~g--eerk--------------~~i~----~ie~~l~EA~ell~qMelE~r~~p 65 (102)
T 1vcs_A 6 SGEGYEQDFAVLTAEITSKIARVPRLPP--DEKK--------------QMVA----NVEKQLEEARELLEQMDLEVREIP 65 (102)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHGGGSCT--TTHH--------------HHHH----HHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCc--HHHH--------------HHHH----HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3455688888888888777763221100 0001 1112 112233344445567888888885
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 030034 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ 157 (184)
Q Consensus 115 ~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qq 157 (184)
+ +.|..+.++|....+||.+++.+.++
T Consensus 66 ~----------------~~R~~~~~klr~Yk~dL~~lk~elk~ 92 (102)
T 1vcs_A 66 P----------------QSRGMYSNRMRSYKQEMGKLETDFKR 92 (102)
T ss_dssp T----------------TTHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred H----------------HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 45777888888888888777777665
No 50
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=70.28 E-value=15 Score=24.23 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (184)
Q Consensus 117 k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~ 152 (184)
|..+..+..++..|...-.+|..+|+.|+.|+..+.
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666666666666666555555443
No 51
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=69.38 E-value=29 Score=25.03 Aligned_cols=60 Identities=25% Similarity=0.313 Sum_probs=40.8
Q ss_pred HHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030034 93 EAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN 155 (184)
Q Consensus 93 e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~ 155 (184)
|..|...+|.+..|.-++ +.+|.+-..+-.+++.+.+.|..|..+.+.|.+|.+--++-.
T Consensus 12 E~KIq~avdtI~lLqmEi---eELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 12 EAKVQQAIDTITLLQMEI---EELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777666555443 467777777777777777777778888888877766555433
No 52
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=69.28 E-value=34 Score=25.70 Aligned_cols=57 Identities=14% Similarity=0.161 Sum_probs=28.0
Q ss_pred hhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 82 GQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDV 148 (184)
Q Consensus 82 ~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL 148 (184)
...|.++..-.+.++..+=.++..+|+ +|.+++.|+......-|+|..==-.|..|+
T Consensus 65 E~~l~e~e~~~~~~l~~~q~~i~~lE~----------eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EI 121 (131)
T 3tnu_A 65 ENSLEETKGRYCMQLAQIQEMIGSVEE----------QLAQLRCEMEQQNQEYKILLDVKTRLEQEI 121 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555554 445555555555444444443323333333
No 53
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=68.97 E-value=17 Score=27.15 Aligned_cols=62 Identities=24% Similarity=0.320 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhh----------HH------HHHHHHHHHHHHHHHhhhhh
Q 030034 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR--LEAENKQ----------LI------AMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 118 ~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r--~~~d~qq----------ip------~l~aEid~lrqElqr~Raa~ 179 (184)
.++.-++.+|.+|...+..|..++..|--+|.+ +++|--. =| ..+.+++.|+.|+.++|..+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666777777777777777777777766 2222100 12 24568888888888888654
No 54
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=68.58 E-value=82 Score=29.92 Aligned_cols=79 Identities=11% Similarity=0.188 Sum_probs=49.6
Q ss_pred hhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 030034 86 PKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADI 165 (184)
Q Consensus 86 ~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEi 165 (184)
.+-..+-+.+++.+++... ..+.|..-.=......=.||--+++-|..+|. ..+++|-+|+.=|
T Consensus 77 sKnsKdseqy~k~~~E~Lr-------------~rq~q~~dNdNtynE~S~ELRRrIqyLKekVd---nQlsnIrvLQsnL 140 (562)
T 3ghg_A 77 QKNNKDSHSLTTNIMEILR-------------GDFSSANNRDNTYNRVSEDLRSRIEVLKRKVI---EKVQHIQLLQKNV 140 (562)
T ss_dssp HHHHHHHHHHHHHHHHTTS-------------SHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HhhchhHHHHHHHHHHHHH-------------HHHHhhhccchhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3455677777877776543 33333331111233333456666666665544 4448899999999
Q ss_pred HHHHHHHHHhhhhhc
Q 030034 166 DGIRSELVEARFEIR 180 (184)
Q Consensus 166 d~lrqElqr~Raa~E 180 (184)
++++.+|||+=..|+
T Consensus 141 edq~~kIQRLEvDId 155 (562)
T 3ghg_A 141 RAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999877764
No 55
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=68.56 E-value=31 Score=25.04 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=30.8
Q ss_pred HHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030034 98 ELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENK 156 (184)
Q Consensus 98 el~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~q 156 (184)
+.-+=+.+||-|+|++.+ +.|..+.++|....+||.+++.+.+
T Consensus 60 EA~eLl~qMelE~r~~p~----------------s~R~~~~~klr~Yk~dL~~lk~elk 102 (102)
T 2qyw_A 60 EANETLAEMEEELRYAPL----------------TFRNPMMSKLRNYRKDLAKLHREVR 102 (102)
T ss_dssp HHHHHHHHHHHHHHTSCH----------------HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCH----------------HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 344445667777777643 4577889999999999988877653
No 56
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=68.32 E-value=6.2 Score=24.08 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=16.4
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhhhh
Q 030034 65 THLQRELTASKDEIHRLGQIIPKLR 89 (184)
Q Consensus 65 vaLrqeL~aaq~El~~l~~~i~~i~ 89 (184)
.+.+|||++.+.||-.+.--++.|+
T Consensus 5 aaikqelaaikkelaaikfelaaik 29 (34)
T 3r4h_A 5 AAIKQELAAIKKELAAIKFELAAIK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888877776665544443
No 57
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=68.28 E-value=7.7 Score=25.66 Aligned_cols=26 Identities=12% Similarity=0.351 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 115 PVRAEVVQLRAEVQKLNSSRQELTTQ 140 (184)
Q Consensus 115 ~~k~El~Q~r~e~q~L~~~RQELt~q 140 (184)
++|.|+..++..+..|...-+||.++
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433
No 58
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=67.92 E-value=25 Score=29.84 Aligned_cols=83 Identities=22% Similarity=0.314 Sum_probs=0.0
Q ss_pred hhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 030034 90 ADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIR 169 (184)
Q Consensus 90 ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lr 169 (184)
+.+--++|..+--+...| .++.|.|.-=..+..+|.+|..---+ +.++..|.+||.++.+++ -.--|.|.++.
T Consensus 86 a~~~d~yR~~LK~IR~~E---~svqp~R~~R~~l~~~I~kLk~k~P~-s~kl~~LeqELvraEae~---lvaEAqL~n~k 158 (234)
T 3plt_A 86 IDKYDQYRVTLKSIRNIE---ASVQPSRDRKEKITDEIAHLKYKDPQ-STKIPVLEQELVRAEAES---LVAEAQLSNIT 158 (234)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHhccCCC-CchHHHHHHHHHHHHHHh---hHHHHHHHHhH
Q ss_pred HHHHHhhhhhcc
Q 030034 170 SELVEARFEIRY 181 (184)
Q Consensus 170 qElqr~Raa~Ey 181 (184)
. +..|.+|.|
T Consensus 159 R--~~lKEa~~~ 168 (234)
T 3plt_A 159 R--EKLKAAYSY 168 (234)
T ss_dssp H--HHHHHHHHH
T ss_pred H--HHHHHHHHH
No 59
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=67.89 E-value=19 Score=25.43 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhh
Q 030034 119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFE 178 (184)
Q Consensus 119 El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa 178 (184)
|+.-+..+|+||.+.=-+...++..|..| +-.+-++||.+-.+.-....++-.+|..
T Consensus 4 di~eLkkevkKL~~~A~q~kmdLHDLaEd---LP~~w~~i~~vA~~tyda~~~l~~ak~~ 60 (71)
T 2js5_A 4 GAEELKAKLKKLNAQATALKMDLHDLAED---LPTGWNRIMEVAEKTYEAYRQLDEFRKS 60 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTTSGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHhcc---chhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45557788899999888999999999998 7788889998888777777777776654
No 60
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=67.39 E-value=36 Score=25.28 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=18.0
Q ss_pred hhhhhhhhhcchhHHHHHHHHHHHHHHHHH
Q 030034 103 GLKLEVELRASEPVRAEVVQLRAEVQKLNS 132 (184)
Q Consensus 103 ~~KmEaelRa~e~~k~El~Q~r~e~q~L~~ 132 (184)
.+|++...-.++.++.||..-..|++.|..
T Consensus 46 ~~k~~eq~~~le~lk~eL~~~~~el~~lq~ 75 (107)
T 2no2_A 46 QRKTQEQLEVLESLKQELATSQRELQVLQG 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666665443
No 61
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=66.28 E-value=71 Score=29.37 Aligned_cols=22 Identities=23% Similarity=0.573 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 030034 122 QLRAEVQKLNSSRQELTTQIKG 143 (184)
Q Consensus 122 Q~r~e~q~L~~~RQELt~qvq~ 143 (184)
.+..+++.|.+.|..++.+|..
T Consensus 81 ~~~~~~~~l~~~rn~~sk~i~~ 102 (501)
T 1wle_A 81 QLREQIRSLEEEKEAVTEAVRA 102 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555444
No 62
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=65.28 E-value=21 Score=23.76 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhhh
Q 030034 163 ADIDGIRSELVEARF 177 (184)
Q Consensus 163 aEid~lrqElqr~Ra 177 (184)
.+|+.|+.|+..++.
T Consensus 44 ~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 44 TEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 63
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=65.26 E-value=35 Score=24.47 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=31.8
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHhhhhHH
Q 030034 120 VVQLRAEVQKL---NSSRQELTTQIKGLTKDVNR-LEAENKQLI 159 (184)
Q Consensus 120 l~Q~r~e~q~L---~~~RQELt~qvq~ltqeL~r-~~~d~qqip 159 (184)
|.|...|++.+ .+.|..+.++|....+||.+ ++.+.+++-
T Consensus 50 l~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 50 LDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55666677777 25688999999999999999 998888774
No 64
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=64.74 E-value=35 Score=25.35 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=12.5
Q ss_pred HHHHHHhhHHHHHHHhhhhhh
Q 030034 67 LQRELTASKDEIHRLGQIIPK 87 (184)
Q Consensus 67 LrqeL~aaq~El~~l~~~i~~ 87 (184)
|.+++..++++++.+..-..+
T Consensus 3 ~~~~~e~lre~l~~le~~~~~ 23 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSD 23 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHh
Confidence 566677777777777555544
No 65
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=63.64 E-value=43 Score=24.85 Aligned_cols=97 Identities=19% Similarity=0.234 Sum_probs=60.2
Q ss_pred hhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH---
Q 030034 63 DNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTT--- 139 (184)
Q Consensus 63 thvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~--- 139 (184)
+|+.|=+..+.+...|--. ...+.|-+....+|-.+..++. ..-...+......|...+++|+.
T Consensus 2 eHi~LLRK~aE~~KqL~~~----~q~~~e~e~~k~eL~~~~~~~~---------~~~~~k~~eq~~~le~lk~eL~~~~~ 68 (107)
T 2no2_A 2 SHADLLRKNAEVTKQVSMA----RQAQVDLEREKKELEDSLERIS---------DQGQRKTQEQLEVLESLKQELATSQR 68 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666555444 3445566777777777777666 33444566666777777777777
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 030034 140 QIKGLTKDVNRLEAENKQLIAMRADIDGIRSEL 172 (184)
Q Consensus 140 qvq~ltqeL~r~~~d~qqip~l~aEid~lrqEl 172 (184)
.|+.+...+.....+.-++-.-.++|..-+..|
T Consensus 69 el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L 101 (107)
T 2no2_A 69 ELQVLQGSLETSAQSEANWAAEFAELEKERDSL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777776655554444444444433
No 66
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=63.25 E-value=22 Score=25.70 Aligned_cols=58 Identities=22% Similarity=0.355 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 030034 119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 119 El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (184)
|+.-+..+|+||.+.=-+...+++.|..| +-.+-++||.+-.+.-....++-.+|..+
T Consensus 16 di~eLkkevkKL~~~A~q~kmdLHDLaEd---LP~~w~~i~~vA~~tyda~~~l~~ak~~L 73 (81)
T 3csx_A 16 AVADLKKKVRKLNSKAGQMKMDLHDLAEG---LPTDYENLVETAEKTYEIFRELDQLKKKL 73 (81)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHH---TTTTGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778888888888999999999999 67888888888777777777776666543
No 67
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=62.51 E-value=36 Score=24.02 Aligned_cols=25 Identities=8% Similarity=0.279 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHH
Q 030034 138 TTQIKGLTKDVNRLEAENKQLIAMR 162 (184)
Q Consensus 138 t~qvq~ltqeL~r~~~d~qqip~l~ 162 (184)
.++++.+..|+++...|-|.+-.+|
T Consensus 41 E~el~~~r~e~~~ql~EYq~LlnvK 65 (86)
T 1x8y_A 41 EREMAEMRARMQQQLDEYQELLDIK 65 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 68
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=62.05 E-value=16 Score=24.05 Aligned_cols=30 Identities=17% Similarity=0.360 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030034 125 AEVQKLNSSRQELTTQIKGLTKDVNRLEAE 154 (184)
Q Consensus 125 ~e~q~L~~~RQELt~qvq~ltqeL~r~~~d 154 (184)
+|+..|....++|-.++..|+++++..++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555544443
No 69
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=60.71 E-value=22 Score=29.47 Aligned_cols=49 Identities=12% Similarity=0.186 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhh
Q 030034 37 MTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQII 85 (184)
Q Consensus 37 ~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i 85 (184)
..++++|..-|-.|+.|..+|..|...--...+|+.+.+.+|..++..+
T Consensus 9 ~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 9 NSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4579999999999999999999887766666666666666666655544
No 70
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=60.18 E-value=16 Score=24.19 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRL 151 (184)
Q Consensus 117 k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~ 151 (184)
+..+..+..++..|.+...+|..+|..|+.++..+
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666665555443
No 71
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=60.10 E-value=56 Score=25.10 Aligned_cols=94 Identities=16% Similarity=0.222 Sum_probs=54.1
Q ss_pred HHHHHHHHHh--hhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHH
Q 030034 47 RREMHRIISE--NRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLR 124 (184)
Q Consensus 47 ~~EiqrLl~d--NqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r 124 (184)
..-|..|... |..+..+.++.==-|..| +|+-.+..-+..+..+-+..-. -+..+|.|+..+.
T Consensus 38 d~km~ei~~~~~~~~l~~~r~aVLaALNia-dEl~k~~~~~~~L~~~l~~~~k--------------E~~~lK~el~~~~ 102 (138)
T 3hnw_A 38 NNKITEFNKEESYRRMSAELRTDMMYLNIA-DDYFKAKKMADSLSLDIENKDK--------------EIYDLKHELIAAQ 102 (138)
T ss_dssp HHHHHHHTTCHHHHTSCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Confidence 4445666644 777776666653333322 3443333333333332222222 2236777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 030034 125 AEVQKLNSSRQELTTQIKGLTKDVNRLEAEN 155 (184)
Q Consensus 125 ~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~ 155 (184)
..+.++...-.+|..++..|..++.++.+++
T Consensus 103 ~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 103 IKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777777777777777777777776543
No 72
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=59.54 E-value=1.2e+02 Score=28.50 Aligned_cols=50 Identities=24% Similarity=0.180 Sum_probs=40.4
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcch
Q 030034 65 THLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASE 114 (184)
Q Consensus 65 vaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e 114 (184)
..-+-+|++-|.||-|+...=++++++-|.-+.+.--+...++||--++.
T Consensus 5 a~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaik 54 (497)
T 3iox_A 5 ADYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIK 54 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34566889999999999999999999999888888888888887654433
No 73
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=59.28 E-value=56 Score=24.84 Aligned_cols=27 Identities=7% Similarity=0.182 Sum_probs=10.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 030034 147 DVNRLEAENKQLIAMRADIDGIRSELV 173 (184)
Q Consensus 147 eL~r~~~d~qqip~l~aEid~lrqElq 173 (184)
++.+...+.-.||.|++.++--+.-..
T Consensus 53 ei~q~~~~lE~I~vLkaQv~IY~~DF~ 79 (110)
T 2v4h_A 53 EAEQHKIVMETVPVLKAQADIYKADFQ 79 (110)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333444444444444444333333
No 74
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=58.84 E-value=71 Score=25.82 Aligned_cols=65 Identities=22% Similarity=0.248 Sum_probs=39.8
Q ss_pred hhhhHHhHHHHHHhhhhhhhhhhcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 89 RADKEAHTRELFDRGLKLEVELRASE----PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEA 153 (184)
Q Consensus 89 ~ae~e~q~Rel~ek~~KmEaelRa~e----~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~ 153 (184)
.+--|.-+|+|-++...+++.--+.+ .|-+.|.|-|.+-..-...=.||.++|++|..||.+...
T Consensus 43 ~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~ 111 (168)
T 3o0z_A 43 ISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKH 111 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888875432221 233333344444444444446788888888888877764
No 75
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=58.67 E-value=96 Score=27.29 Aligned_cols=98 Identities=18% Similarity=0.240 Sum_probs=68.7
Q ss_pred hHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHH-HHHHHHHHHHHHHHHHH
Q 030034 60 AIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVV-QLRAEVQKLNSSRQELT 138 (184)
Q Consensus 60 LAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~-Q~r~e~q~L~~~RQELt 138 (184)
+......||+.+...+.+++.|...++.-.+-.+.= ..|.+. .-..+-....|-...+ .+..| .++...|.+++
T Consensus 15 ~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al-~rL~eq---~g~~~~ds~~v~~~mq~~Le~E-re~~~~Rd~~a 89 (302)
T 3ibp_A 15 AREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSL-NQLSEQ---CGEEFTSSQDVTEYLQQLLERE-REAIVERDEVG 89 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---TTCCCSSHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHH-HHHHHH---hCCcCCCHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 456788999999999999999998888777666541 122222 1223345556666664 34444 88999999999
Q ss_pred HHHHHHHHHHHHHHH-hhhhHHHHH
Q 030034 139 TQIKGLTKDVNRLEA-ENKQLIAMR 162 (184)
Q Consensus 139 ~qvq~ltqeL~r~~~-d~qqip~l~ 162 (184)
.+-+.+.+++.++.. +---.|.|+
T Consensus 90 ~~k~~Le~~ierLs~pgg~~dprL~ 114 (302)
T 3ibp_A 90 ARKNAVDEEIERLSQPGGSEDQRLN 114 (302)
T ss_dssp HHHHHHHHHHHHHHSCCCCCCHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 999999999999875 444455544
No 76
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=57.60 E-value=64 Score=25.84 Aligned_cols=58 Identities=14% Similarity=0.149 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhh
Q 030034 45 IQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVE 109 (184)
Q Consensus 45 ~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEae 109 (184)
.|...|+.|..+.+. ....|++++.+.+.||+.|... + .=.+..|+.|++++.++-++
T Consensus 71 EQq~ql~~I~~e~r~---~~~~Lr~ql~akr~EL~aL~~a-~---~~DeakI~aL~~Ei~~Lr~q 128 (175)
T 3lay_A 71 EQQATAQKIYDDYYT---QTSALRQQLISKRYEYNALLTA-S---SPDTAKINAVAKEMESLGQK 128 (175)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTS-S---SCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhC-C---CCCHHHHHHHHHHHHHHHHH
Confidence 488888888877664 4667899999999999887432 1 12344566666555554443
No 77
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=57.40 E-value=33 Score=25.52 Aligned_cols=49 Identities=29% Similarity=0.340 Sum_probs=24.1
Q ss_pred HhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 101 DRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (184)
Q Consensus 101 ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~ 152 (184)
+++..++.++.. +..|+..+..++.+=...|.+.-.....+.+||.-+.
T Consensus 12 e~l~~le~~~~~---~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 12 EDYNTLKRELSD---RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433 4444445555555555555555555555555555444
No 78
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=57.20 E-value=84 Score=28.31 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 118 AEVVQLRAEVQKLNSSRQELTTQIKGL 144 (184)
Q Consensus 118 ~El~Q~r~e~q~L~~~RQELt~qvq~l 144 (184)
.+-.++..+++.|.+.|..++.+|..+
T Consensus 38 ~~~r~~~~~~~~l~~~~n~~sk~i~~~ 64 (455)
T 2dq0_A 38 TEWRTKLKEINRLRHERNKIAVEIGKR 64 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445556666666666666666543
No 79
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=55.83 E-value=49 Score=23.11 Aligned_cols=62 Identities=23% Similarity=0.380 Sum_probs=35.3
Q ss_pred HHHHHHHhhhhhH----HhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHH---HHHhhhhhhhhh
Q 030034 49 EMHRIISENRHAI----DDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRE---LFDRGLKLEVEL 110 (184)
Q Consensus 49 EiqrLl~dNqRLA----athvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Re---l~ek~~KmEael 110 (184)
||+.|.+-|..|- ++-.-..-++...+.-|..+...+..+++|-+.+.++ |++-=++||.|+
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EI 70 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEI 70 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4555555554433 3333334445556666666666777777777666554 566556666655
No 80
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=55.67 E-value=52 Score=23.33 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRL 151 (184)
Q Consensus 115 ~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~ 151 (184)
.++.++.+++.++.+|...+-++.+++..+.+.+.-+
T Consensus 7 ~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 7 ELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555555555555555444444
No 81
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=55.27 E-value=77 Score=25.17 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 030034 122 QLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLI 159 (184)
Q Consensus 122 Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip 159 (184)
++.+|.++|...-|-+-+--++++.||.-.+...+++-
T Consensus 98 ~LeAE~aKLeEekQIseASRqgLrRDLeASReAKKqlE 135 (146)
T 2xnx_M 98 QLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQVE 135 (146)
T ss_dssp HHHHHHHHHGGGTTTC----------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555544444444555666777776666666553
No 82
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=53.85 E-value=33 Score=22.38 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 030034 130 LNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVE 174 (184)
Q Consensus 130 L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr 174 (184)
|.+.+||+.. .+.+||++++-|. ||++++|+.+
T Consensus 9 le~~KqEIL~---E~RkElqK~K~EI---------IeAi~~El~~ 41 (45)
T 1use_A 9 LQRVKQELLE---EVKKELQKVKEEI---------IEAFVQELRK 41 (45)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHH---------HHHHHHHHHh
Confidence 4444555433 3345555554432 5666666654
No 83
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=53.66 E-value=35 Score=24.39 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 030034 136 ELTTQIKGLTKDVNRLEAEN 155 (184)
Q Consensus 136 ELt~qvq~ltqeL~r~~~d~ 155 (184)
+|..+++.|.+|+.++++.+
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqi 43 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQI 43 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 44555555555555544433
No 84
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=53.49 E-value=49 Score=23.29 Aligned_cols=42 Identities=19% Similarity=0.345 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 030034 123 LRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADID 166 (184)
Q Consensus 123 ~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid 166 (184)
+..++..|.....||..+++.+.+++.+.+.+-+. .+++.++
T Consensus 4 L~k~i~~l~~E~eel~~klk~~~ee~~~~~eee~~--~~~~~le 45 (71)
T 1s1c_X 4 LTKDIEILRRENEELTEKMKKAEEEYKLEKEEEIS--NLKAAFE 45 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--THHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 57788999999999999999999999988744333 4444443
No 85
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=53.12 E-value=43 Score=23.70 Aligned_cols=34 Identities=3% Similarity=0.006 Sum_probs=13.3
Q ss_pred HHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhh
Q 030034 51 HRIISENRHAIDDNTHLQRELTASKDEIHRLGQI 84 (184)
Q Consensus 51 qrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~ 84 (184)
|.++..=++|-...-.|.+.+...+.+++.+..+
T Consensus 9 Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~ 42 (117)
T 2zqm_A 9 QAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKA 42 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444444443333
No 86
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=52.35 E-value=63 Score=23.26 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=37.4
Q ss_pred hhhHHHHHHH-------HHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhh
Q 030034 37 MTLEEEIEIQ-------RREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRG 103 (184)
Q Consensus 37 ~~LEe~La~Q-------~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~ 103 (184)
.-||.||..- .-||..|=..|..|+..+-.++..-.+-.+|..+|..-.. -..-.+|.|+.|+
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~----~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN----GWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHhh
Confidence 3456665544 3477777777777777766655555555555555544333 3345677777663
No 87
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=51.60 E-value=40 Score=22.18 Aligned_cols=39 Identities=15% Similarity=0.316 Sum_probs=34.3
Q ss_pred HHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhh
Q 030034 50 MHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKL 88 (184)
Q Consensus 50 iqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i 88 (184)
...|-..|..|++-...|-..|..|.++|..|+..+.++
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446778899999999999999999999999999888765
No 88
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=51.39 E-value=34 Score=28.66 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030034 120 VVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE 154 (184)
Q Consensus 120 l~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d 154 (184)
|+|+++|--..++.=++|+.....+..|+..+++.
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~ 66 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSR 66 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45566666666666555555555444443333333
No 89
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=50.97 E-value=93 Score=24.81 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=17.4
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 111 RASEPVRAEVVQLRAEVQKLNSSRQELTTQ 140 (184)
Q Consensus 111 Ra~e~~k~El~Q~r~e~q~L~~~RQELt~q 140 (184)
+.++.+++|+.-++.+...+....+.|..+
T Consensus 96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~E 125 (152)
T 3a7p_A 96 KNTERLNAALISGTIENNVLQQKLSDLKKE 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344467777777766665555544444443
No 90
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=50.03 E-value=55 Score=26.86 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHhhh
Q 030034 161 MRADIDGIRSELVEARF 177 (184)
Q Consensus 161 l~aEid~lrqElqr~Ra 177 (184)
++++++.++..+..++.
T Consensus 133 ~~a~l~~a~a~l~~a~~ 149 (341)
T 3fpp_A 133 IDAQIKRNQASLDTAKT 149 (341)
T ss_dssp HHHHHHHTHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444433333
No 91
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=49.82 E-value=1.3e+02 Score=26.06 Aligned_cols=110 Identities=16% Similarity=0.227 Sum_probs=60.1
Q ss_pred HHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHh-HHHHHHhhhhhhhhhhcchhHHHHHHHHHH
Q 030034 47 RREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAH-TRELFDRGLKLEVELRASEPVRAEVVQLRA 125 (184)
Q Consensus 47 ~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q-~Rel~ek~~KmEaelRa~e~~k~El~Q~r~ 125 (184)
...|+.++..+ ....+-|..++.++..+ +.+.+++.|.. +..+++| -.+.+++-+.|+++
T Consensus 358 ~~~~~~vl~G~-------~t~eeal~~~~~~i~~~---l~~~~~~~e~~~~~~~~~~---------~~~~~~~~~~~~~~ 418 (471)
T 3mq9_A 358 RTAVINAASGR-------QTVDEALKDAQTRITAA---RDGLRAVMEARNVTHLLQQ---------ELTEAQKGFQDVEA 418 (471)
T ss_dssp HHHHHHHHHSS-------SCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-------CCHHHHHHHHHHHHHHH---HHhhHHHHHhhhHHHHHHH---------HHHHHhhhHHHHHH
Confidence 34556665544 23455566666665543 66666665532 2222221 12355566666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhcc
Q 030034 126 EVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEIRY 181 (184)
Q Consensus 126 e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 181 (184)
-+-.-+-. .++=..+|.++..... +.|-.+.+||-.+-++|+.+++-|+-
T Consensus 419 ~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 419 QAATANHT---VMALMASLDAEKAQGQ---KKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhcchh---HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54332211 1122234445443322 57888888999999999988887764
No 92
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=49.54 E-value=21 Score=26.49 Aligned_cols=34 Identities=12% Similarity=0.340 Sum_probs=27.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhc
Q 030034 147 DVNRLEAENKQLIAMRADIDGIRSELVEARFEIR 180 (184)
Q Consensus 147 eL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (184)
|.+|----+-++.-|..||+.+..+|.-.|++|+
T Consensus 47 eFAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~ 80 (93)
T 3sjb_C 47 NYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQ 80 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555567888899999999999999999986
No 93
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=49.54 E-value=81 Score=23.75 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhh
Q 030034 155 NKQLIAMRADIDGIRSELVEARF 177 (184)
Q Consensus 155 ~qqip~l~aEid~lrqElqr~Ra 177 (184)
-.+|-+|-+||+.|+-|-|+++-
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999999999988874
No 94
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=49.11 E-value=53 Score=22.27 Aligned_cols=40 Identities=13% Similarity=0.332 Sum_probs=31.6
Q ss_pred hhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHH
Q 030034 57 NRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFD 101 (184)
Q Consensus 57 NqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~e 101 (184)
-..|.+|--+||.++...++|..+|+..+ |.|...|.=++
T Consensus 5 EKSlVDtVYaLkDqV~eL~qe~k~m~k~l-----EeEqkARk~LE 44 (56)
T 2w6b_A 5 SKSLVDTVYALKDEVQELRQDNKKMKKSL-----EEEQRARKDLE 44 (56)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 35688999999999999999999998776 55666554333
No 95
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=48.92 E-value=1.3e+02 Score=26.71 Aligned_cols=28 Identities=18% Similarity=0.461 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 115 PVRAEVVQLRAEVQKLNSSRQELTTQIK 142 (184)
Q Consensus 115 ~~k~El~Q~r~e~q~L~~~RQELt~qvq 142 (184)
.+-.+-..+..+++.|.+.|..++.+|.
T Consensus 32 ~~~~~~r~~~~~~~~l~~~~n~~sk~i~ 59 (421)
T 1ses_A 32 ALDREVQELKKRLQEVQTERNQVAKRVP 59 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666666666654
No 96
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=48.91 E-value=48 Score=24.40 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhh
Q 030034 38 TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQII 85 (184)
Q Consensus 38 ~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i 85 (184)
-+|-+|..|..||+.+-.-=--|-.+|..+||.- .+||.+|+.-+
T Consensus 40 eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~Y---EeEI~rLr~eL 84 (92)
T 3vp9_A 40 DYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAY---EEEIKHLKLGL 84 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 5788999999999998877777888999999843 45666665444
No 97
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=48.81 E-value=91 Score=24.08 Aligned_cols=12 Identities=25% Similarity=0.448 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 030034 162 RADIDGIRSELV 173 (184)
Q Consensus 162 ~aEid~lrqElq 173 (184)
.+|++.||.+.+
T Consensus 91 ~ae~erlr~~~~ 102 (121)
T 3mq7_A 91 SAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhch
Confidence 344444444443
No 98
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=48.36 E-value=96 Score=24.23 Aligned_cols=105 Identities=10% Similarity=0.237 Sum_probs=52.3
Q ss_pred HHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhh---------HHhHHHHHHhhhhhhhhhhcchhHHHHHHH
Q 030034 52 RIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADK---------EAHTRELFDRGLKLEVELRASEPVRAEVVQ 122 (184)
Q Consensus 52 rLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~---------e~q~Rel~ek~~KmEaelRa~e~~k~El~Q 122 (184)
++|.|=+-=|.+=.+.||.++.-=-|++-.+ .+.+|+-.. |.-..-|-+-+..|++|+.....+
T Consensus 29 k~L~~le~sassDa~vrq~Ia~LP~eVsd~s-~l~klkDk~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L------ 101 (152)
T 4fla_A 29 KALQDLENAASGDATVRQKIASLPQEVQDVS-LLEKITDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQL------ 101 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCGGGTCGG-GGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHhhccccchHHHHHHHHcCCccccCHH-HHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 3333334447777888999988666666654 345554332 333344445555555555443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 030034 123 LRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDG 167 (184)
Q Consensus 123 ~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~ 167 (184)
++.|...-+....++...++.|.-.+.-..+|-.++.|++.
T Consensus 102 ----~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~ 142 (152)
T 4fla_A 102 ----ARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKS 142 (152)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444444444444443
No 99
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=47.94 E-value=55 Score=22.90 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhHHHHHHHHHH
Q 030034 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGL---TKDVNRLEAENKQLIAMRADIDG 167 (184)
Q Consensus 116 ~k~El~Q~r~e~q~L~~~RQELt~qvq~l---tqeL~r~~~d~qqip~l~aEid~ 167 (184)
.+.||.++-.+|.+|.+.-.+|..++..- ++|-.++..-..++..+.++|+.
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~ 74 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQ 74 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777666666666431 23333433333344444444443
No 100
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=47.16 E-value=84 Score=23.24 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=55.2
Q ss_pred hhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 030034 86 PKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLI 159 (184)
Q Consensus 86 ~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip 159 (184)
..+=+-+..+|-+|-+.+.++++++--++-+++-+.=-..|-..=-+.|..+.++.+.|..+|..++..+.++-
T Consensus 15 EeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 15 EEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC---
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33344577778888888888888888888888888778888888888888888888888888877777665543
No 101
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=47.09 E-value=37 Score=25.89 Aligned_cols=61 Identities=8% Similarity=0.124 Sum_probs=37.7
Q ss_pred hHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 60 AIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTT 139 (184)
Q Consensus 60 LAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~ 139 (184)
|....+.|..+|...+.+|+.+.+++.--..-++.++. +=|+|=.++.|+...
T Consensus 5 L~~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~---------------------------~LI~KWr~asq~aae 57 (122)
T 3viq_A 5 LLSRRLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQ---------------------------TLIQKWKNAAQQAAE 57 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH---------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH---------------------------HHHHHHHHHHHHHHH
Confidence 45556677777777777777777665433333332222 226677777777777
Q ss_pred HHHHHHHH
Q 030034 140 QIKGLTKD 147 (184)
Q Consensus 140 qvq~ltqe 147 (184)
.|....++
T Consensus 58 eLf~~~~~ 65 (122)
T 3viq_A 58 VLFKPMAE 65 (122)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766665
No 102
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=46.94 E-value=33 Score=23.84 Aligned_cols=10 Identities=10% Similarity=0.381 Sum_probs=3.6
Q ss_pred HHHHHHhhHH
Q 030034 67 LQRELTASKD 76 (184)
Q Consensus 67 LrqeL~aaq~ 76 (184)
|++++...+.
T Consensus 55 Lr~~i~~L~~ 64 (70)
T 1gd2_E 55 LRQKVRQLEE 64 (70)
T ss_dssp HTTHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 103
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=46.87 E-value=1.8e+02 Score=27.07 Aligned_cols=38 Identities=13% Similarity=0.281 Sum_probs=27.8
Q ss_pred hhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhH
Q 030034 59 HAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHT 96 (184)
Q Consensus 59 RLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~ 96 (184)
.+...|-++..||.+.+..++.+...+..+...+-...
T Consensus 408 ~ll~kh~~f~~el~~~~~~v~~l~~~~~~L~~~~~~~~ 445 (863)
T 1sjj_A 408 ALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDS 445 (863)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTCCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccH
Confidence 44567888889999888888888877777765543333
No 104
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=46.64 E-value=77 Score=29.19 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGL 144 (184)
Q Consensus 116 ~k~El~Q~r~e~q~L~~~RQELt~qvq~l 144 (184)
+-.+..++..+++.|.+.|..++.+|..+
T Consensus 38 ld~~~r~~~~~~~~l~~~rn~~sk~i~~~ 66 (485)
T 3qne_A 38 EYKEWVKLRFDLDEHNKKLNSVQKEIGKR 66 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666667777777777666544
No 105
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=46.31 E-value=75 Score=22.43 Aligned_cols=46 Identities=17% Similarity=0.256 Sum_probs=25.4
Q ss_pred hHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 92 KEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQ 140 (184)
Q Consensus 92 ~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~q 140 (184)
.|-+|..+-+...++...+-..+..+.|+..- ..+|...+.+|..+
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~---~~~l~~ek~~L~~q 57 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQ---NVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 34445555566666666665555556555433 44555555555555
No 106
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=46.29 E-value=43 Score=24.57 Aligned_cols=43 Identities=9% Similarity=0.203 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 030034 126 EVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGI 168 (184)
Q Consensus 126 e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~l 168 (184)
+++.|....|.|..+++.+++.++.+......+-.....|+.|
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l 44 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDI 44 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555555555666666655555554444444444444443
No 107
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=45.53 E-value=80 Score=22.50 Aligned_cols=58 Identities=26% Similarity=0.374 Sum_probs=37.6
Q ss_pred HHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHH
Q 030034 53 IISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLN 131 (184)
Q Consensus 53 Ll~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~ 131 (184)
+.++|-.|-.+-++||.||..-..|+++|...+.-= -+..|.+..|+.-+..|.--|.
T Consensus 9 ~~~~~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk---------------------~kd~ErLNDEiislNIENNlL~ 66 (75)
T 3a7o_A 9 IVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALK---------------------NKNTERLNDELISGTIENNVLQ 66 (75)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------cccHHHhhHHHHHhHHHHHHHH
Confidence 556777777788889999988888888776554311 1233467777777777765443
No 108
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=45.46 E-value=66 Score=29.01 Aligned_cols=26 Identities=12% Similarity=0.141 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 123 LRAEVQKLNSSRQELTTQIKGLTKDV 148 (184)
Q Consensus 123 ~r~e~q~L~~~RQELt~qvq~ltqeL 148 (184)
+-.+-.++...-++|-++-..+++++
T Consensus 36 l~~~~r~~~~~~~~l~~~~n~~sk~i 61 (455)
T 2dq0_A 36 LDTEWRTKLKEINRLRHERNKIAVEI 61 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 109
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=44.52 E-value=34 Score=26.26 Aligned_cols=64 Identities=14% Similarity=0.112 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHH-HHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhh---HHhHHHHH
Q 030034 37 MTLEEEIEIQRREMH-RIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADK---EAHTRELF 100 (184)
Q Consensus 37 ~~LEe~La~Q~~Eiq-rLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~---e~q~Rel~ 100 (184)
..||.+.+.+...|. .+-..|..||+...+=...-.....-+..+....++++-|. -.+||+++
T Consensus 30 eaie~~fa~~r~~le~emRaan~~La~ai~~~~~~~p~V~aaid~~h~~mG~LQkeTi~HvfeMR~VL 97 (118)
T 2y39_A 30 ELKEDAFAQRRREIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQRATLVHVFEMRAGL 97 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 110
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=43.99 E-value=41 Score=27.93 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcc
Q 030034 158 LIAMRADIDGIRSELVEARFEIRY 181 (184)
Q Consensus 158 ip~l~aEid~lrqElqr~Raa~Ey 181 (184)
+-.+++.++.++.++..++..++|
T Consensus 131 ~~~~~~~l~~~~~~l~~a~~~l~~ 154 (369)
T 4dk0_A 131 MDVVQENIKQAEIEVNTAETNLGY 154 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334455555555555555555443
No 111
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=43.59 E-value=88 Score=22.43 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=34.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 030034 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADI 165 (184)
Q Consensus 113 ~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEi 165 (184)
+|.+=.|=.|+..=--.|..++.+|-++|..||-|-.-++.++..+...++-+
T Consensus 11 vEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~ 63 (77)
T 2w83_C 11 VENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKL 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555556778899999999999988666665555555544433
No 112
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=43.39 E-value=85 Score=22.56 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 030034 144 LTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 144 ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (184)
+.+....+..+|. .|+++|+.|..|+..+|..|
T Consensus 41 ~~~r~~~Le~EN~---~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 41 TQHKVLELTAENE---RLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3334444444443 35667777777777777654
No 113
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=43.18 E-value=71 Score=21.26 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 030034 160 AMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 160 ~l~aEid~lrqElqr~Raa~ 179 (184)
.|+++|+.|+.|++.++.-|
T Consensus 41 ~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 41 ALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666665543
No 114
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=43.07 E-value=1e+02 Score=23.16 Aligned_cols=51 Identities=25% Similarity=0.299 Sum_probs=37.8
Q ss_pred HHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHH
Q 030034 69 RELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAE 119 (184)
Q Consensus 69 qeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~E 119 (184)
++|..+-++|.|-.-+...-=.|-|..+-..|++++-||.||..-+.|+..
T Consensus 59 ReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~EKe~L~~~ 109 (111)
T 2v66_B 59 RELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVS 109 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466667777777766666666677778888899999999988866666544
No 115
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=42.86 E-value=65 Score=28.67 Aligned_cols=30 Identities=17% Similarity=0.446 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKG 143 (184)
Q Consensus 114 e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ 143 (184)
+.+++++.++..+++.|...-.++..+++.
T Consensus 71 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 71 TEIQNRVKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777776666555555554443
No 116
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=42.03 E-value=87 Score=28.85 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 030034 129 KLNSSRQELTTQIKGLTKDV 148 (184)
Q Consensus 129 ~L~~~RQELt~qvq~ltqeL 148 (184)
++...-++|-++...+++++
T Consensus 44 ~~~~~~~~l~~~rn~~sk~i 63 (485)
T 3qne_A 44 KLRFDLDEHNKKLNSVQKEI 63 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 117
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=41.73 E-value=88 Score=22.01 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 030034 140 QIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 140 qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~ 179 (184)
+.+.+.+....+..+|. .|+++|+.|..|+..+|..|
T Consensus 37 r~~e~~~r~~~L~~eN~---~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 37 RNLETQHKVLELTAENE---RLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555554 36788888899988888765
No 118
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=40.71 E-value=56 Score=24.46 Aligned_cols=24 Identities=13% Similarity=0.326 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhh
Q 030034 156 KQLIAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 156 qqip~l~aEid~lrqElqr~Raa~ 179 (184)
.++-.|..||..|.|+|+.++.--
T Consensus 67 ~~v~elqgEI~~Lnq~Lqda~~~~ 90 (99)
T 3ni0_A 67 ARIKELENEVTKLNQELENLRIQK 90 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777776543
No 119
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=40.31 E-value=1.3e+02 Score=26.05 Aligned_cols=123 Identities=15% Similarity=0.168 Sum_probs=83.1
Q ss_pred hhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhh----cchhHHHHHHHHHHHHHHHHH--
Q 030034 59 HAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELR----ASEPVRAEVVQLRAEVQKLNS-- 132 (184)
Q Consensus 59 RLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelR----a~e~~k~El~Q~r~e~q~L~~-- 132 (184)
-|...--.|+.++..-|+.++.+...+.+.+..-+...+.+-...-.+..-|- .++.+++|+.+++.+++....
T Consensus 120 ~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~~~~~~i 199 (346)
T 2nrj_A 120 TLKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVNYYKQLE 199 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGCGGGCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555667777777777888888888888887777777777777666655553 445678888887777663322
Q ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhcc
Q 030034 133 ---------------------------SRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEIRY 181 (184)
Q Consensus 133 ---------------------------~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 181 (184)
...++..++..+.+.+.........+-.+..-+++|..-+.-|..++++
T Consensus 200 ~~~~~~~~g~~i~~~i~Ggi~a~~a~k~~~~~~~ei~~l~~~i~~~~~l~~~l~~~~~~~~~l~~~I~~Ai~al~~ 275 (346)
T 2nrj_A 200 SDGFNVMKGAILGLPIIGGIIVGVARDNLGKLEPLLAELRQTVDYKVTLNRVVGVAYSNINEMHKALDDAINALTY 275 (346)
T ss_dssp --CCGGGTSCEEEEEETTTEEEEEEGGGHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccceehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344445555555555555555666777788888888888888877764
No 120
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=40.11 E-value=72 Score=23.74 Aligned_cols=40 Identities=13% Similarity=0.197 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhc
Q 030034 141 IKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEIR 180 (184)
Q Consensus 141 vq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (184)
+..|.+++.+...+.-+||.|++.++--+.-...-|++=|
T Consensus 40 ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aERaaRE 79 (96)
T 3fx0_A 40 IDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQARE 79 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567777788888888888888888877777776643
No 121
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=40.10 E-value=2.2e+02 Score=26.13 Aligned_cols=31 Identities=3% Similarity=-0.107 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTK 146 (184)
Q Consensus 116 ~k~El~Q~r~e~q~L~~~RQELt~qvq~ltq 146 (184)
+-.+-..+..+++.|.+.|..++.+|..+.+
T Consensus 42 ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 42 ADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455666777777777777777765544
No 122
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=39.30 E-value=95 Score=21.60 Aligned_cols=42 Identities=12% Similarity=0.191 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 030034 125 AEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADID 166 (184)
Q Consensus 125 ~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid 166 (184)
.|.+.+...=-.|.++++.+..|+++...|-|.+-.+|.-+|
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le 46 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALD 46 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555566666666666666666666654333
No 123
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=38.94 E-value=53 Score=23.83 Aligned_cols=39 Identities=15% Similarity=0.249 Sum_probs=32.4
Q ss_pred HHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhh
Q 030034 50 MHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKL 88 (184)
Q Consensus 50 iqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i 88 (184)
+..-|.+|..|-.....|..|++..+.|+..|+..+.-+
T Consensus 41 L~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 41 LYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455688999999999999999999999998887766543
No 124
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=38.17 E-value=1e+02 Score=22.72 Aligned_cols=48 Identities=27% Similarity=0.230 Sum_probs=25.7
Q ss_pred HHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHH
Q 030034 80 RLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEV 127 (184)
Q Consensus 80 ~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~ 127 (184)
+|.+.+.....|-+.+|..|-.++.+||.=......+|+....+.+|.
T Consensus 40 rLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eL 87 (96)
T 1t3j_A 40 RLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESEL 87 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 444445555556566666666666666654444444444444444433
No 125
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=37.32 E-value=99 Score=27.46 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 117 RAEVVQLRAEVQKLNSSRQELTTQIKGL 144 (184)
Q Consensus 117 k~El~Q~r~e~q~L~~~RQELt~qvq~l 144 (184)
-.+-.++..+++.|.+.|..++.+|..+
T Consensus 36 ~~~~r~~~~~~~~l~~~~n~~sk~i~~~ 63 (425)
T 2dq3_A 36 DKRRREIIKRLEALRSERNKLSKEIGKL 63 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777777777777777654
No 126
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=36.89 E-value=1.7e+02 Score=23.74 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=18.7
Q ss_pred hhhhhhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 030034 105 KLEVELRASEPVRAEVVQLRAEVQKLNSSRQE 136 (184)
Q Consensus 105 KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQE 136 (184)
.+|.+.++++.-+.++.+++-+..|+...|+.
T Consensus 100 ~Ve~e~q~Le~ar~el~qArke~eKfelHrqi 131 (169)
T 3k29_A 100 NVLAASKELERAEVELTKRRKEEEKTRLHKEE 131 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555566666666666666666555553
No 127
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=36.45 E-value=12 Score=21.84 Aligned_cols=23 Identities=13% Similarity=0.120 Sum_probs=12.6
Q ss_pred HHHHhhhhhHHhhHHHHHHHHhh
Q 030034 52 RIISENRHAIDDNTHLQRELTAS 74 (184)
Q Consensus 52 rLl~dNqRLAathvaLrqeL~aa 74 (184)
.|--+|..|-....+|+|-++..
T Consensus 4 alefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHh
Confidence 34445655555555666655543
No 128
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=36.29 E-value=1.2e+02 Score=26.73 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030034 122 QLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE 154 (184)
Q Consensus 122 Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d 154 (184)
++..++.+|.....+|..+++.+..++..+...
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 39 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEI 39 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444433
No 129
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=35.98 E-value=26 Score=29.33 Aligned_cols=65 Identities=14% Similarity=0.147 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhH---HhHHHHHHhhhhhhhhh
Q 030034 46 QRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE---AHTRELFDRGLKLEVEL 110 (184)
Q Consensus 46 Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e---~q~Rel~ek~~KmEael 110 (184)
+...+..++..+.-+.+.+-.|..|+...+.+|..|........++-. .+.-.||.++.|+.-+.
T Consensus 139 ~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~~vt~i~w~~ 206 (250)
T 2ve7_C 139 CRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSKIEWEY 206 (250)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHHHHHCCEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhceeec
Confidence 444677888888888888888888888887777777777777766655 56677777777765544
No 130
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=35.98 E-value=1.2e+02 Score=21.86 Aligned_cols=28 Identities=14% Similarity=-0.040 Sum_probs=14.3
Q ss_pred hhhhhhhhhhHHhHHHHHHhhhhhhhhh
Q 030034 83 QIIPKLRADKEAHTRELFDRGLKLEVEL 110 (184)
Q Consensus 83 ~~i~~i~ae~e~q~Rel~ek~~KmEael 110 (184)
..+.++...-+.++..+-..+..+|++|
T Consensus 26 ~~l~e~E~~~~~e~~~~q~~i~~lE~eL 53 (95)
T 3mov_A 26 ERIQELEDLLAKEKDNSRRMLTDKEREM 53 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555444
No 131
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=35.88 E-value=2.1e+02 Score=24.67 Aligned_cols=23 Identities=9% Similarity=0.169 Sum_probs=16.5
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHH
Q 030034 151 LEAENKQLIAMRADIDGIRSELV 173 (184)
Q Consensus 151 ~~~d~qqip~l~aEid~lrqElq 173 (184)
+.++...||.|+.+|+.++.+|.
T Consensus 171 L~~~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 171 LKNQGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp HHHTTCCHHHHHHHHHHHTGGGC
T ss_pred HhcccccHHHHHHHHHHHHHHHH
Confidence 33555678888888888887776
No 132
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=35.83 E-value=1.5e+02 Score=23.40 Aligned_cols=58 Identities=19% Similarity=0.235 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHhhhhhcc
Q 030034 124 RAEVQKLNSSRQELTTQIKGLTKDVNR--LEAENKQLIAMRADIDGIRSELVEARFEIRY 181 (184)
Q Consensus 124 r~e~q~L~~~RQELt~qvq~ltqeL~r--~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 181 (184)
-.+.+.|.+-=-+|..-|..|.+|+.. .+...+|+-.+..+|+.+..||...-..|.-
T Consensus 20 ~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ 79 (141)
T 3okq_A 20 GDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDT 79 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555556666543 2345566666777777777776666555543
No 133
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=35.04 E-value=69 Score=21.45 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 120 VVQLRAEVQKLNSSRQELTTQIKGLT 145 (184)
Q Consensus 120 l~Q~r~e~q~L~~~RQELt~qvq~lt 145 (184)
+..+...+..|.....+|..+|..|+
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444333333333333333
No 134
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=34.99 E-value=97 Score=21.41 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=13.5
Q ss_pred hhhhhhhHHhHHHHHHhhhhhhh
Q 030034 86 PKLRADKEAHTRELFDRGLKLEV 108 (184)
Q Consensus 86 ~~i~ae~e~q~Rel~ek~~KmEa 108 (184)
..++.=++.+|.+|=+++..||.
T Consensus 21 RafReRK~~~i~~LE~~v~~le~ 43 (70)
T 1gd2_E 21 RAFRKRKEDHLKALETQVVTLKE 43 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666655554
No 135
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=34.62 E-value=65 Score=25.91 Aligned_cols=46 Identities=13% Similarity=0.214 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhc
Q 030034 135 QELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEIR 180 (184)
Q Consensus 135 QELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~E 180 (184)
+.|..+++.+...|.-+.-+.-.--.+++++|.++.|.-.++-+.+
T Consensus 79 d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~ 124 (158)
T 3tul_A 79 DAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALD 124 (158)
T ss_dssp HHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555666789999999999887775543
No 136
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=34.31 E-value=2.1e+02 Score=26.27 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 030034 114 EPVRAEVVQLRAEVQKLN 131 (184)
Q Consensus 114 e~~k~El~Q~r~e~q~L~ 131 (184)
+.++++--++..+|.++.
T Consensus 87 ~~l~~~rn~~sk~i~~~~ 104 (501)
T 1wle_A 87 RSLEEEKEAVTEAVRALV 104 (501)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444444555555443
No 137
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=34.15 E-value=1.4e+02 Score=22.09 Aligned_cols=58 Identities=21% Similarity=0.356 Sum_probs=35.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-----------------HHHHHHhhhhHHHHHHHHHHHHHH
Q 030034 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLT--KD-----------------VNRLEAENKQLIAMRADIDGIRSE 171 (184)
Q Consensus 113 ~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~lt--qe-----------------L~r~~~d~qqip~l~aEid~lrqE 171 (184)
++.+|.++..++.|..+|-.....|-.++-..+ .| .++.+. .+.+-.|++|++.||.=
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~-~~~~e~Lq~E~erLr~~ 90 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRL-REDHSQLQAECERLRGL 90 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777777765511 11 122222 36677777788877753
No 138
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=33.59 E-value=86 Score=22.13 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=31.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (184)
Q Consensus 112 a~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqe 147 (184)
..+.+|+++..+-.++-.|.+.|-.++.+|..+..+
T Consensus 13 ~L~~lR~~ID~iD~~Ll~LL~~R~~~~~~Ig~~K~~ 48 (90)
T 2vkl_A 13 EIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMA 48 (90)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999887765
No 139
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=33.41 E-value=1.5e+02 Score=22.05 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 030034 128 QKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158 (184)
Q Consensus 128 q~L~~~RQELt~qvq~ltqeL~r~~~d~qqi 158 (184)
.+|.+.+.+|..++..++..|.-....+..+
T Consensus 72 ~~L~~~k~eLe~~l~el~~rleeeee~~~~L 102 (129)
T 2fxo_A 72 DQLIKNKIQLEAKVKEMNKRLEDEEEMNAEL 102 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666655555444433333
No 140
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=33.17 E-value=1.2e+02 Score=22.28 Aligned_cols=42 Identities=12% Similarity=0.273 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Q 030034 114 EPVRAEVVQLRAEVQKLNSSRQ-ELTTQIKGLTKDVNRLEAEN 155 (184)
Q Consensus 114 e~~k~El~Q~r~e~q~L~~~RQ-ELt~qvq~ltqeL~r~~~d~ 155 (184)
|.||+|...+-.|+..+...++ +.-.||++=.+|++..+.-+
T Consensus 17 D~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tv 59 (92)
T 3vp9_A 17 DAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTV 59 (92)
T ss_dssp CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 3555555555566655555554 66666655555555555433
No 141
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=32.86 E-value=1.1e+02 Score=20.24 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=20.9
Q ss_pred HHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhh
Q 030034 49 EMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQII 85 (184)
Q Consensus 49 EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i 85 (184)
.|..|-.+-..|-.....|+.++...+.|+..|...+
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555566666666666666665443
No 142
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=32.84 E-value=1.6e+02 Score=22.42 Aligned_cols=98 Identities=8% Similarity=0.228 Sum_probs=53.9
Q ss_pred HHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 68 QRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (184)
Q Consensus 68 rqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqe 147 (184)
=.++...+.+|..+...+..|+.-+ .+++. .......++.+|..+-.++.++... +-.+++.|.++
T Consensus 42 ~~~v~~I~~~i~~i~~~v~~l~~~~--------~~~L~---~~~~~~~~k~~le~l~~~i~~~a~~---ik~~Lk~l~~~ 107 (180)
T 1s94_A 42 FEQVEEIRAMIDKISDNVDAVKKKH--------SDILS---APQTDDQMKEELEELMTDIKRTANK---VRGKLKTIELN 107 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHCC----------CHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHh---cCCchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 3455555555555555555444332 22221 1224556788888888888877654 44555555555
Q ss_pred HHHHH----------HhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 030034 148 VNRLE----------AENKQLIAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 148 L~r~~----------~d~qqip~l~aEid~lrqElqr~Raa~ 179 (184)
..... .-.-|.-.|...+-.+=++++.....|
T Consensus 108 ~~~~~~~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y 149 (180)
T 1s94_A 108 IEQEEHSNKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDY 149 (180)
T ss_dssp HHHTC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44331 122366777777777777887776655
No 143
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=32.19 E-value=1.3e+02 Score=21.06 Aligned_cols=57 Identities=19% Similarity=0.106 Sum_probs=24.1
Q ss_pred hhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 82 GQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQI 141 (184)
Q Consensus 82 ~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qv 141 (184)
...+.++.+--+.++-.+-..+..+|++|. .+|.|+.+.-.|-|.|-.++--|-.+|
T Consensus 16 e~~l~e~E~~~~~~l~~~q~~i~~lE~el~---~~r~e~~~ql~EYq~LlnvK~~Le~EI 72 (86)
T 1x8y_A 16 EAKLRDLEDSLARERDTSRRLLAEKEREMA---EMRARMQQQLDEYQELLDIKLALDMEI 72 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344444444444445555555555554433 233333333333333433333333333
No 144
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=31.72 E-value=1.4e+02 Score=21.31 Aligned_cols=14 Identities=14% Similarity=0.451 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhh
Q 030034 163 ADIDGIRSELVEAR 176 (184)
Q Consensus 163 aEid~lrqElqr~R 176 (184)
.|||+|..++.+.+
T Consensus 77 ~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 77 VERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555444433
No 145
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=31.59 E-value=92 Score=22.08 Aligned_cols=45 Identities=29% Similarity=0.299 Sum_probs=33.8
Q ss_pred HHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcch
Q 030034 66 HLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASE 114 (184)
Q Consensus 66 aLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e 114 (184)
-|..-|-.-|.||-+|+..++++++-=.- -.+=..|||.+++..+
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR~KLiK----YtelnKKLe~~~~~~q 51 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLRSKLEK----YVDITKKLEDQNLNLQ 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhh
Confidence 45667778899999999999999986543 3455678887775443
No 146
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=30.77 E-value=2.6e+02 Score=24.07 Aligned_cols=18 Identities=6% Similarity=0.030 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 030034 138 TTQIKGLTKDVNRLEAEN 155 (184)
Q Consensus 138 t~qvq~ltqeL~r~~~d~ 155 (184)
..-.+-|.++|.+++...
T Consensus 396 ~~~~~~~~~~~~~~~~~~ 413 (471)
T 3mq9_A 396 RNVTHLLQQELTEAQKGF 413 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhH
Confidence 333344444444444333
No 147
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=30.66 E-value=2.7e+02 Score=24.98 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=34.2
Q ss_pred HHHHhhHHHHHHHhhhhhhhhhhh-----------HHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 030034 69 RELTASKDEIHRLGQIIPKLRADK-----------EAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQEL 137 (184)
Q Consensus 69 qeL~aaq~El~~l~~~i~~i~ae~-----------e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQEL 137 (184)
++|.....++..+...|-+.-.+. ...++.+.+++.++|+-+.. .-..++.|...=..+
T Consensus 48 ~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~----------~~~~i~~l~~~~~~~ 117 (409)
T 1m1j_C 48 QQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILA----------HENTIQQLTDMHIMN 117 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcc----------hHHHHHHHHHHHHhh
Confidence 456666666666655555543332 23344445555555443222 223334444333344
Q ss_pred HHHHHHHHHHHHHH
Q 030034 138 TTQIKGLTKDVNRL 151 (184)
Q Consensus 138 t~qvq~ltqeL~r~ 151 (184)
..+++.|.+.+..+
T Consensus 118 ~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 118 SNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555554444
No 148
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=30.65 E-value=1.5e+02 Score=21.63 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHh
Q 030034 141 IKGLTKDVNRLEAE 154 (184)
Q Consensus 141 vq~ltqeL~r~~~d 154 (184)
|+.||+||+.+..+
T Consensus 38 i~~Lt~eLq~A~~e 51 (90)
T 4b6x_A 38 VNNLTDELQDAIDE 51 (90)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 56677777665543
No 149
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=30.31 E-value=72 Score=20.93 Aligned_cols=30 Identities=10% Similarity=0.232 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhhhhHHhhHHHHHHHHhhHH
Q 030034 47 RREMHRIISENRHAIDDNTHLQRELTASKD 76 (184)
Q Consensus 47 ~~EiqrLl~dNqRLAathvaLrqeL~aaq~ 76 (184)
..++..|-.+|..|..+...|+.|+...++
T Consensus 28 e~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 28 EEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777777666666666655443
No 150
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=30.30 E-value=1e+02 Score=21.14 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=30.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (184)
Q Consensus 113 ~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqe 147 (184)
.+.+|+++..+-.++-+|.+.|-.++.+|-.+.++
T Consensus 5 L~~lR~~ID~iD~~l~~Ll~~R~~~~~~i~~~K~~ 39 (90)
T 2d8d_A 5 IQALRKEVDRVNREILRLLSERGRLVQEIGRLQTE 39 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999887764
No 151
>2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 1.90A {Salmonella typhimurium}
Probab=30.25 E-value=2.1e+02 Score=22.79 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=53.4
Q ss_pred hhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHhh
Q 030034 102 RGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE---NKQLIAMRADIDGIRSELVEAR 176 (184)
Q Consensus 102 k~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d---~qqip~l~aEid~lrqElqr~R 176 (184)
.+.+|.++++..+....=+..+.+=++.-...=.+++.-+|.+..-+-.+... ....-++..|++.|..||.+.=
T Consensus 10 ~~~~l~~~~~~l~q~~~n~~~~~s~l~~ae~aL~~i~~~l~r~rel~vqa~ngt~s~~dr~~i~~e~~~l~~~i~~~a 87 (248)
T 2d4x_A 10 QAVVLSQAQAQNSQYALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLMNLA 87 (248)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888887777777777777777777777777776555554322 2456778889999999987753
No 152
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=29.77 E-value=2.3e+02 Score=23.23 Aligned_cols=15 Identities=7% Similarity=0.160 Sum_probs=7.0
Q ss_pred hhhHHHHHHHHHHHH
Q 030034 37 MTLEEEIEIQRREMH 51 (184)
Q Consensus 37 ~~LEe~La~Q~~Eiq 51 (184)
.-++..+....+++.
T Consensus 66 ~~~~~~l~~~~a~l~ 80 (369)
T 4dk0_A 66 TTQINTLNTRKAALA 80 (369)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 335555554444443
No 153
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=29.32 E-value=56 Score=27.99 Aligned_cols=34 Identities=35% Similarity=0.482 Sum_probs=14.6
Q ss_pred HhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q 030034 94 AHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKL 130 (184)
Q Consensus 94 ~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L 130 (184)
.++..|-.|..||.++|+ .++.|+.+++.|+++|
T Consensus 61 ~ql~~L~arNe~L~~~Lk---~ar~El~~LkeElerL 94 (251)
T 3m9b_A 61 ARIDSLAARNSKLMETLK---EARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHTTTHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 333444444444444333 3444444444444444
No 154
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=29.22 E-value=83 Score=22.81 Aligned_cols=39 Identities=13% Similarity=0.219 Sum_probs=32.0
Q ss_pred HHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhh
Q 030034 49 EMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPK 87 (184)
Q Consensus 49 EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~ 87 (184)
-+..-|.+|..|-.....++.|++..+.|...|...+.-
T Consensus 32 AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 32 ALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678899999999999999999999998888766543
No 155
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=29.22 E-value=3.4e+02 Score=24.92 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=5.9
Q ss_pred HHHHHhhHHHHHHH
Q 030034 68 QRELTASKDEIHRL 81 (184)
Q Consensus 68 rqeL~aaq~El~~l 81 (184)
+.+|...++-|..|
T Consensus 99 ~~~LqeLe~~l~~l 112 (464)
T 1m1j_B 99 KPVLRDLKDRVAKF 112 (464)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHH
Confidence 33344444444444
No 156
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=29.04 E-value=34 Score=19.97 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=12.0
Q ss_pred HHhhHHHHHHHHhhHHHHHHH
Q 030034 61 IDDNTHLQRELTASKDEIHRL 81 (184)
Q Consensus 61 AathvaLrqeL~aaq~El~~l 81 (184)
-.....|+||+++..-|+-.|
T Consensus 6 kqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 6 KQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHh
Confidence 333444677777766665443
No 157
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=28.55 E-value=1.5e+02 Score=20.77 Aligned_cols=16 Identities=13% Similarity=0.310 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 030034 160 AMRADIDGIRSELVEA 175 (184)
Q Consensus 160 ~l~aEid~lrqElqr~ 175 (184)
.|...++.+..++..+
T Consensus 74 ~L~~~~e~ie~~i~~l 89 (117)
T 2zqm_A 74 ELKEKIETLEVRLNAL 89 (117)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 158
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=28.32 E-value=2.3e+02 Score=23.04 Aligned_cols=11 Identities=18% Similarity=0.175 Sum_probs=4.7
Q ss_pred hHHHHHHHHHH
Q 030034 39 LEEEIEIQRRE 49 (184)
Q Consensus 39 LEe~La~Q~~E 49 (184)
++..+.....+
T Consensus 67 ~~~~~~~~~a~ 77 (341)
T 3fpp_A 67 AENQIKEVEAT 77 (341)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444443333
No 159
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=28.12 E-value=26 Score=26.03 Aligned_cols=35 Identities=11% Similarity=0.309 Sum_probs=26.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhcc
Q 030034 147 DVNRLEAENKQLIAMRADIDGIRSELVEARFEIRY 181 (184)
Q Consensus 147 eL~r~~~d~qqip~l~aEid~lrqElqr~Raa~Ey 181 (184)
|.+|----+-++.-|.+||+.+..+|.-.|+.|+-
T Consensus 54 EFAKWAKL~Rk~DKl~~ele~l~~~L~s~ks~fd~ 88 (94)
T 3vlc_E 54 NYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQA 88 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTHHHHTTTTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555667888888999999999888888863
No 160
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=27.84 E-value=1.7e+02 Score=26.03 Aligned_cols=52 Identities=17% Similarity=0.203 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhh
Q 030034 37 MTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKL 88 (184)
Q Consensus 37 ~~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i 88 (184)
.-|+++|..-...+..|...|..+.++...+++.|.....+-+.|...+-++
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577777777777777777777777777777777766666666665555444
No 161
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=27.84 E-value=84 Score=19.20 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=14.2
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhhh
Q 030034 65 THLQRELTASKDEIHRLGQIIPKL 88 (184)
Q Consensus 65 vaLrqeL~aaq~El~~l~~~i~~i 88 (184)
.+.+.|-++...|+|.+..-|+.+
T Consensus 5 aaikeeqaaieeeiqaikeeiaai 28 (36)
T 1bb1_B 5 AAIKEEQAAIEEEIQAIKEEIAAI 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666665555544
No 162
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=27.70 E-value=1.9e+02 Score=21.63 Aligned_cols=41 Identities=27% Similarity=0.381 Sum_probs=21.0
Q ss_pred hhHHHHHHHHhhHHHHHHHh-------hhhhhhhhhhHHhHHHHHHhhhhhh
Q 030034 63 DNTHLQRELTASKDEIHRLG-------QIIPKLRADKEAHTRELFDRGLKLE 107 (184)
Q Consensus 63 thvaLrqeL~aaq~El~~l~-------~~i~~i~ae~e~q~Rel~ek~~KmE 107 (184)
+-.+|++||+.++.++.-|+ ..+..+..|+|-+ +.|.+++|
T Consensus 5 s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFY----F~KLRdIE 52 (106)
T 4e61_A 5 SLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFY----FNKLRDIE 52 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 34455555555555555544 4444455555543 34444444
No 163
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=27.60 E-value=1.7e+02 Score=21.03 Aligned_cols=53 Identities=15% Similarity=0.210 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHhh
Q 030034 123 LRAEVQKLNSSRQELTTQIKGLTKDVNR-LEAENKQLIAMRADIDGIRSELVEAR 176 (184)
Q Consensus 123 ~r~e~q~L~~~RQELt~qvq~ltqeL~r-~~~d~qqip~l~aEid~lrqElqr~R 176 (184)
+.+||+-=.+...|| .+|.+...-++. ++---++.-.|.+||+.++.++-.+|
T Consensus 19 LeaEIqAKQ~i~EEL-s~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 19 LEEEVLTRQSLSREM-EAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555 333333222221 11111223344666666666665544
No 164
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=27.40 E-value=50 Score=27.24 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHhh
Q 030034 41 EEIEIQRREMHRIISENRHAIDDN 64 (184)
Q Consensus 41 e~La~Q~~EiqrLl~dNqRLAath 64 (184)
++++...+++..|..+|+||..+|
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 577888999999999999998876
No 165
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=27.29 E-value=1.2e+02 Score=21.46 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=30.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (184)
Q Consensus 113 ~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqe 147 (184)
.+.+|+++..+-.++-.|.+.|-.++.+|..+...
T Consensus 19 L~~lR~~ID~ID~~Ll~LL~~R~~~~~~Ig~~K~~ 53 (91)
T 1ybz_A 19 LKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKKE 53 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999998887764
No 166
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=27.28 E-value=51 Score=22.11 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 030034 155 NKQLIAMRADIDGIRSELV 173 (184)
Q Consensus 155 ~qqip~l~aEid~lrqElq 173 (184)
++|+.+|+.|--.||+||+
T Consensus 9 ~~QVe~Lk~ENshLrrEL~ 27 (54)
T 1deb_A 9 LKQVEALKMENSNLRQELE 27 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 4566666666666666664
No 167
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=27.05 E-value=1.3e+02 Score=21.82 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=26.0
Q ss_pred HHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhh
Q 030034 48 REMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPK 87 (184)
Q Consensus 48 ~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~ 87 (184)
.++..|=.+|.-|......|++|+.....|+..+.+-..+
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566677777777777777777777776666554433
No 168
>2py8_A Hypothetical protein RBCX; all helical fold, chaperone; HET: PE4; 2.45A {Synechocystis SP} SCOP: a.280.1.1
Probab=26.62 E-value=1.6e+02 Score=23.24 Aligned_cols=59 Identities=20% Similarity=0.286 Sum_probs=45.4
Q ss_pred HHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHH-hhhhhhhhhhhHHhHHHHHHhhhhhhhh
Q 030034 49 EMHRIISENRHAIDDNTHLQRELTASKDEIHRL-GQIIPKLRADKEAHTRELFDRGLKLEVE 109 (184)
Q Consensus 49 EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l-~~~i~~i~ae~e~q~Rel~ek~~KmEae 109 (184)
=|+.|+.+|+-||--.+..|.-++.---|- + ......|+.++-..+|..++++..+..|
T Consensus 56 fL~~Lmre~~~LAlRIMeVR~~ya~e~fe~--l~em~~~~I~~~N~elmRq~leR~t~~~~e 115 (147)
T 2py8_A 56 FLTELLDENKELVLRILAVREDIAESVLDF--LPGMTRNSLAESNIAHRRHLLERLTRTVAE 115 (147)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHGGG--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 378899999999999999988887632222 2 2456788889999999999998877654
No 169
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=26.15 E-value=1.2e+02 Score=22.19 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=29.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (184)
Q Consensus 113 ~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqe 147 (184)
.+.+|.++..+-.++-.|.+.|-.++.+|-.+.++
T Consensus 14 L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K~~ 48 (114)
T 3rmi_A 14 LAYLRQSIDNFDITLIHILAERFRCTQAIGRLKAR 48 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999999999998887764
No 170
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=25.97 E-value=3.7e+02 Score=24.36 Aligned_cols=106 Identities=11% Similarity=0.163 Sum_probs=68.6
Q ss_pred HHHHHHh-hhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHH
Q 030034 50 MHRIISE-NRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQ 128 (184)
Q Consensus 50 iqrLl~d-NqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q 128 (184)
||.+|.+ |+.|-...--|++.|... .....+...+++.+++...+--+.....|.+=.|+.
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~-----------s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s------- 115 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNY-----------QKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQIN------- 115 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHH-----------HHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHH-------
Confidence 6665543 555666666666665443 344557778899999888777776666666544332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhccc
Q 030034 129 KLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEIRYF 182 (184)
Q Consensus 129 ~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyE 182 (184)
.+|-.++.-|.. ++...++.|-.|+.-|+.++-++||+=.+|+|=
T Consensus 116 ------~eLe~~i~~lk~---~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c 160 (390)
T 1deq_A 116 ------EDLRSRIEILRR---KVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIK 160 (390)
T ss_pred ------HHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333333332 344556678888899999999999998888774
No 171
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=25.92 E-value=1.3e+02 Score=21.39 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=30.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (184)
Q Consensus 113 ~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqe 147 (184)
.+.+|+++..+-.++-.|.+.|-.++.+|-.+.++
T Consensus 7 L~~lR~~ID~iD~~L~~LL~~R~~~~~~v~~~K~~ 41 (109)
T 1ecm_A 7 LLALREKISALDEKLLALLAERRELAVEVGKAKLL 41 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999887764
No 172
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=25.58 E-value=2.5e+02 Score=22.26 Aligned_cols=43 Identities=12% Similarity=0.091 Sum_probs=23.4
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 110 LRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (184)
Q Consensus 110 lRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~ 152 (184)
...+..++.|+.+++..+..|...=.+-..-++.+..|+.-++
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLq 109 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGT 109 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355566666666666666666554444444555555544433
No 173
>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A
Probab=25.19 E-value=87 Score=22.21 Aligned_cols=38 Identities=5% Similarity=0.155 Sum_probs=32.5
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 109 ELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTK 146 (184)
Q Consensus 109 elRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltq 146 (184)
+....+.+|.++..+-.++-.|.+.|-.++.+|-.+.+
T Consensus 6 ~~~~L~~lR~~ID~iD~~il~LL~~R~~~~~~i~~~K~ 43 (101)
T 3ret_A 6 DCTGLADIREAIDRIDLDIVQALGRRMDYVKAASRFEA 43 (101)
T ss_dssp GCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCS
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456789999999999999999999999999887764
No 174
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=25.13 E-value=1.3e+02 Score=21.83 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHhhHHHHH
Q 030034 39 LEEEIEIQRREMHRIISENRHAIDDNTHLQR 69 (184)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRLAathvaLrq 69 (184)
||.....-..|+..|..+|.++..+.-++++
T Consensus 53 LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 53 LENEKTQLIQQVEQLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433333333
No 175
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=25.04 E-value=1.4e+02 Score=19.28 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=18.3
Q ss_pred HHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhh
Q 030034 50 MHRIISENRHAIDDNTHLQRELTASKDEIHRLGQI 84 (184)
Q Consensus 50 iqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~ 84 (184)
+..|-..-.-|-.....|+.++...+.|+..|...
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555555555555555555555443
No 176
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=24.83 E-value=4.5e+02 Score=24.94 Aligned_cols=83 Identities=13% Similarity=0.278 Sum_probs=46.9
Q ss_pred HHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 66 HLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLT 145 (184)
Q Consensus 66 aLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~lt 145 (184)
.||..+...+++++.| -+.+.+=+.+...+.-+..-++..-.....++.+...+...+..|.-.|+++..+...+-
T Consensus 24 ~lr~~~q~~e~~ik~L----e~~Qe~f~~~yk~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~R~e~~~k~~~~l 99 (596)
T 1bg1_A 24 DVRKRVQDLEQKMKVV----ENLQDDFDFNYKTLKSQGDMQDLNGNNQSVTRQKMQQLEQMLTALDQMRRSIVSELAGLL 99 (596)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTTCC---------CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666677777666 344445455555554221111111122234566777788888999999999998777765
Q ss_pred HHHHHHH
Q 030034 146 KDVNRLE 152 (184)
Q Consensus 146 qeL~r~~ 152 (184)
..+...+
T Consensus 100 ~~~~~lq 106 (596)
T 1bg1_A 100 SAMEYVQ 106 (596)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544433
No 177
>3pwx_A Putative flagellar HOOK-associated protein; structural genomics, structural protein, PSI-2, protein STRU initiative; 2.50A {Vibrio parahaemolyticus}
Probab=24.64 E-value=2.8e+02 Score=22.44 Aligned_cols=77 Identities=13% Similarity=0.168 Sum_probs=54.8
Q ss_pred hhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHhhhh
Q 030034 102 RGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEA---ENKQLIAMRADIDGIRSELVEARFE 178 (184)
Q Consensus 102 k~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~---d~qqip~l~aEid~lrqElqr~Raa 178 (184)
++.+|..+++..+....=+..+.+=++.-...=++++.-+|.+..-+-.+.. .....-++..|++.|+.||...=.+
T Consensus 12 ~~~~l~~~i~~l~q~~~N~~~a~s~l~~ae~aL~~i~~~l~r~rel~vqa~ngt~s~~dr~ai~~E~~~l~~~i~~iaNt 91 (239)
T 3pwx_A 12 KLLNLERENSAIAQYQSNIANLKTTLSSQETHLDSVSESLKSMRDIVLWGANGSLTDQDRSGMITELKSYRDSIESSFNA 91 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCTTTHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4677888888888887777777777777777777777777777655444432 2245668899999999998875443
No 178
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}
Probab=24.36 E-value=4.5e+02 Score=25.35 Aligned_cols=80 Identities=18% Similarity=0.213 Sum_probs=47.1
Q ss_pred HHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 67 LQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTK 146 (184)
Q Consensus 67 LrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltq 146 (184)
||..+...+++++.| .+.+-+-+.+..++.-+ ... +-=.....++.+...+...+..|.-.|+++..+.+.+-.
T Consensus 149 lr~~~q~~e~~ik~L----e~~Qe~f~~~y~~~~~~-~~~-~~~~~~~~~~~~~~~lq~~~~~l~~~R~~~~~k~~~~l~ 222 (683)
T 1yvl_A 149 VKDKVMCIEHEIKSL----EDLQDEYDFKCKTLQNR-EHE-TNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIELLN 222 (683)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTC-C-------CHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhh-hhh-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666766666 33444555555555322 111 111122345667777888899999999999988877666
Q ss_pred HHHHHH
Q 030034 147 DVNRLE 152 (184)
Q Consensus 147 eL~r~~ 152 (184)
.+...+
T Consensus 223 ~~~~lq 228 (683)
T 1yvl_A 223 VTELTQ 228 (683)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 179
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=23.96 E-value=2.2e+02 Score=20.96 Aligned_cols=40 Identities=25% Similarity=0.411 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 030034 133 SRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSEL 172 (184)
Q Consensus 133 ~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqEl 172 (184)
..+||..++..|+++++++..-....-.||..-.-|..||
T Consensus 48 t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eL 87 (96)
T 1t3j_A 48 TQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESEL 87 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444444444444444444433333333333333333333
No 180
>3v47_C Flagellin; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Salmonella enterica subsp}
Probab=23.88 E-value=3.5e+02 Score=24.55 Aligned_cols=78 Identities=6% Similarity=0.073 Sum_probs=46.0
Q ss_pred HhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHhhh
Q 030034 101 DRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE---NKQLIAMRADIDGIRSELVEARF 177 (184)
Q Consensus 101 ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d---~qqip~l~aEid~lrqElqr~Ra 177 (184)
-.+.+|.++++..+....=+....+=+|.-...=++.+.-+|.+..=.-.+... ....-++..||+.|+.||.+.=.
T Consensus 8 AIa~~lrsqi~gl~Qa~rN~~dgiS~lqtAEgAL~~i~~iLqRmRELaVQAaNgT~s~~DR~aIq~Ei~qL~~eI~~Ian 87 (425)
T 3v47_C 8 AIANRFTSNIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSN 87 (425)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346788899999998888888888888888888888888888876443333332 24567888999999999987654
Q ss_pred h
Q 030034 178 E 178 (184)
Q Consensus 178 a 178 (184)
.
T Consensus 88 ~ 88 (425)
T 3v47_C 88 Q 88 (425)
T ss_dssp H
T ss_pred h
Confidence 3
No 181
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=23.67 E-value=2e+02 Score=25.12 Aligned_cols=56 Identities=14% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 030034 98 ELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENK 156 (184)
Q Consensus 98 el~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~q 156 (184)
.++.|+.||..++-. +..-|..+.+.++.|...=..+..+|+.|.+.+..+....+
T Consensus 2 ~~~~~~~~~~~~~~~---~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 2 SGQKTVQKILEEVRI---LEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp ---CHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHH---HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 182
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=23.43 E-value=3.8e+02 Score=23.57 Aligned_cols=40 Identities=18% Similarity=0.388 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 030034 135 QELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVE 174 (184)
Q Consensus 135 QELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr 174 (184)
.++....+.+.++|.........+-.+..+++.+++++..
T Consensus 288 ~~l~~~~~~~~~~l~~l~~~~~~l~~l~~~~~~~~~~~~~ 327 (517)
T 4ad8_A 288 EDVVEFGAQAAEELAGLEEDERDAGSLQADVDALHAELLK 327 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555554443
No 183
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=23.41 E-value=91 Score=21.30 Aligned_cols=7 Identities=29% Similarity=0.615 Sum_probs=2.8
Q ss_pred hhhhhhh
Q 030034 82 GQIIPKL 88 (184)
Q Consensus 82 ~~~i~~i 88 (184)
...++.+
T Consensus 25 r~lvP~~ 31 (83)
T 1nkp_B 25 RDSVPSL 31 (83)
T ss_dssp HTTSGGG
T ss_pred HHHCCCC
Confidence 3344443
No 184
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=23.09 E-value=2e+02 Score=25.36 Aligned_cols=30 Identities=13% Similarity=0.275 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (184)
Q Consensus 118 ~El~Q~r~e~q~L~~~RQELt~qvq~ltqe 147 (184)
.|+..+..++.+|...-+++...++.+.+.
T Consensus 10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 39 (403)
T 4etp_A 10 EKIAALKEKIAALKEKIKDTELGMKELNEI 39 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 185
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=22.62 E-value=98 Score=20.97 Aligned_cols=21 Identities=10% Similarity=0.359 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhc
Q 030034 160 AMRADIDGIRSELVEARFEIR 180 (184)
Q Consensus 160 ~l~aEid~lrqElqr~Raa~E 180 (184)
+|+.++..|+||..+...++|
T Consensus 14 aLkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333
No 186
>1abz_A Alpha-T-alpha, ATA; de novo design, helix-turn-helix, peptide; HET: SIN; NMR {} SCOP: k.15.1.1
Probab=22.13 E-value=39 Score=21.15 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=4.5
Q ss_pred HHHHHHHhhh
Q 030034 75 KDEIHRLGQI 84 (184)
Q Consensus 75 q~El~~l~~~ 84 (184)
.+|||.|.+-
T Consensus 9 eqelqalear 18 (40)
T 1abz_A 9 EQELQALEAR 18 (40)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 4445444433
No 187
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=22.13 E-value=2e+02 Score=19.86 Aligned_cols=36 Identities=28% Similarity=0.481 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHHHHhh
Q 030034 141 IKGLTKDVNRLEAENK--------QLIAMRADIDGIRSELVEAR 176 (184)
Q Consensus 141 vq~ltqeL~r~~~d~q--------qip~l~aEid~lrqElqr~R 176 (184)
+..+.+|++-..+++| .+.+|+.|--.+|.|+|--|
T Consensus 28 laafekeiaafeselqaykgkgnpevealrkeaaairdelqayr 71 (73)
T 2a3d_A 28 LAAFEKEIAAFESELQAYKGKGNPEVEALRKEAAAIRDELQAYR 71 (73)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCSSTTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhh
Confidence 3445556655555554 57789999999999998655
No 188
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=22.08 E-value=3e+02 Score=24.37 Aligned_cols=35 Identities=17% Similarity=0.326 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (184)
Q Consensus 115 ~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~ 149 (184)
.|+.||..++..+.+|...-+++...+..+.+.|.
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 41 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLF 41 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555544444443
No 189
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=21.99 E-value=2.2e+02 Score=20.23 Aligned_cols=42 Identities=17% Similarity=0.343 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q 030034 115 PVRAEVVQLRAEVQKLNSSRQELT---TQIKGLTKDVNRLEAENK 156 (184)
Q Consensus 115 ~~k~El~Q~r~e~q~L~~~RQELt---~qvq~ltqeL~r~~~d~q 156 (184)
.++..+.|.++|++.|....+||. .+++.+-.+|.+-+++++
T Consensus 15 rl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~ 59 (78)
T 3iv1_A 15 RMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVD 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999999996 466677777776666554
No 190
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=21.70 E-value=3e+02 Score=22.60 Aligned_cols=37 Identities=14% Similarity=0.242 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (184)
Q Consensus 116 ~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~ 152 (184)
+..-+.+.+.-|++|+..=-.|+.++....+|+..++
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~ 47 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQ 47 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566667766666666666666555555444
No 191
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=21.44 E-value=4.2e+02 Score=23.35 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 030034 115 PVRAEVVQLRAEVQKLNS 132 (184)
Q Consensus 115 ~~k~El~Q~r~e~q~L~~ 132 (184)
.+++++.++..+++.|..
T Consensus 68 ~l~~~~~~~~~~~~~~~~ 85 (421)
T 1ses_A 68 ALIARGKALGEEAKRLEE 85 (421)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444443333
No 192
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=21.32 E-value=2.4e+02 Score=21.72 Aligned_cols=33 Identities=12% Similarity=0.108 Sum_probs=25.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhhhcccc
Q 030034 151 LEAENKQLIAMRADIDGIRSELVEARFEIRYFL 183 (184)
Q Consensus 151 ~~~d~qqip~l~aEid~lrqElqr~Raa~EyEk 183 (184)
.++|.--|..+..|++.|-.||.+.+.--.|+.
T Consensus 31 ~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~~l 63 (123)
T 2lf0_A 31 LVEAADKYAELEKEKATLEAEIARLREVHSQKL 63 (123)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888899999999988887665543
No 193
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=21.25 E-value=1.8e+02 Score=21.29 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (184)
Q Consensus 113 ~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~ 152 (184)
...+|+|+..+..+=+.|-..-+.+..+++.++.|..-.+
T Consensus 8 ~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted~~n~~ 47 (106)
T 2aze_B 8 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQR 47 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
No 194
>3etv_A Protein transport protein TIP20,linker,protein transport protein DSL1; TIP20P-DSL1P complex, endoplasmic reticulum, ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB: 3etu_A
Probab=20.94 E-value=1.2e+02 Score=27.31 Aligned_cols=29 Identities=14% Similarity=0.535 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTK 146 (184)
Q Consensus 118 ~El~Q~r~e~q~L~~~RQELt~qvq~ltq 146 (184)
.+|..+-..|+.+...|.+|+.|+|.+.+
T Consensus 9 ~DLl~id~~I~~i~~eRd~La~~lq~~~~ 37 (355)
T 3etv_A 9 DDLLNINDRIKQVQNERNELASKLQNLKQ 37 (355)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677778899999999999999988885
No 195
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=20.86 E-value=2.1e+02 Score=19.67 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 118 AEVVQLRAEVQKLNSSRQELTTQI 141 (184)
Q Consensus 118 ~El~Q~r~e~q~L~~~RQELt~qv 141 (184)
+...+++.+++.+...++.|..++
T Consensus 8 ~~f~~lq~~~~~l~~q~~~l~~~~ 31 (107)
T 1fxk_A 8 AQFQQLQQQAQAISVQKQTVEMQI 31 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555444444443
No 196
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=20.81 E-value=1.3e+02 Score=23.03 Aligned_cols=35 Identities=9% Similarity=0.119 Sum_probs=18.4
Q ss_pred hHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHH
Q 030034 92 KEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE 126 (184)
Q Consensus 92 ~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e 126 (184)
.+.-+-++++++..+-.+|..+...-.+|..+|..
T Consensus 34 ~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~ 68 (180)
T 1s94_A 34 GGGFMEEFFEQVEEIRAMIDKISDNVDAVKKKHSD 68 (180)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666665555555555555555555544
No 197
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=20.68 E-value=9.8e+02 Score=27.33 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHhh---HHHHHHHHhhHHHHH
Q 030034 39 LEEEIEIQRREMHRIISENRHAIDDN---THLQRELTASKDEIH 79 (184)
Q Consensus 39 LEe~La~Q~~EiqrLl~dNqRLAath---vaLrqeL~aaq~El~ 79 (184)
|.+|-..-...+.+|-+-=..|..|. ..|+.+|+.-+-+|.
T Consensus 1908 l~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~ 1951 (3245)
T 3vkg_A 1908 INEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELD 1951 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445544444444443 334444444444443
No 198
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=20.65 E-value=48 Score=27.56 Aligned_cols=14 Identities=7% Similarity=0.190 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhhhh
Q 030034 165 IDGIRSELVEARFE 178 (184)
Q Consensus 165 id~lrqElqr~Raa 178 (184)
++.+++|..++|..
T Consensus 45 ~~~l~~En~rLr~l 58 (255)
T 2j5u_A 45 VADLKKENKDLKES 58 (255)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 199
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=20.29 E-value=1.2e+02 Score=20.29 Aligned_cols=26 Identities=15% Similarity=0.345 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhhhhHHhhHHHHHHHH
Q 030034 47 RREMHRIISENRHAIDDNTHLQRELT 72 (184)
Q Consensus 47 ~~EiqrLl~dNqRLAathvaLrqeL~ 72 (184)
..++..|-.+|..|.++...|+++|.
T Consensus 36 e~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 36 EDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56667777888888777777777653
No 200
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=20.13 E-value=4.4e+02 Score=23.08 Aligned_cols=66 Identities=15% Similarity=0.320 Sum_probs=0.0
Q ss_pred hhHHHHHHHHH----------------HHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHH
Q 030034 38 TLEEEIEIQRR----------------EMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFD 101 (184)
Q Consensus 38 ~LEe~La~Q~~----------------EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~e 101 (184)
++|+.+..|.. ||++|+..|.+|-.--..|++--...+++|+.-......+..+-.
T Consensus 172 ~f~~q~~~~e~~~~~~~~~~~~~~~~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------- 243 (373)
T 3hhm_B 172 IFEEQCQTQERYSKEYIEKFKREGNEKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMN-------- 243 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------
Q ss_pred hhhhhhhhhhcchhHHHHHHHHH
Q 030034 102 RGLKLEVELRASEPVRAEVVQLR 124 (184)
Q Consensus 102 k~~KmEaelRa~e~~k~El~Q~r 124 (184)
++|-||.|++
T Consensus 244 -------------~lkp~l~ql~ 253 (373)
T 3hhm_B 244 -------------SIKPDLIQLR 253 (373)
T ss_dssp -------------HHHHHHHHHH
T ss_pred -------------ccChHHHHHH
No 201
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=20.04 E-value=1.9e+02 Score=18.86 Aligned_cols=36 Identities=14% Similarity=0.082 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHhhHHHHHHHHh
Q 030034 38 TLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTA 73 (184)
Q Consensus 38 ~LEe~La~Q~~EiqrLl~dNqRLAathvaLrqeL~a 73 (184)
-||..|+.-..||.+.+.+-|-|-..-++|-.|++.
T Consensus 11 ~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIat 46 (59)
T 1gk6_A 11 ELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIAT 46 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 356666666777777777777777766666666543
Done!