Query 030034
Match_columns 184
No_of_seqs 79 out of 81
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 11:51:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030034.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030034hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seta1 a.2.7.1 (A:1-110) Sery 75.9 9.2 0.00067 25.9 8.9 64 110-175 27-90 (110)
2 d1fxka_ a.2.5.1 (A:) Prefoldin 75.4 2.9 0.00021 28.7 5.6 74 98-174 19-104 (107)
3 d1qvra2 c.37.1.20 (A:149-535) 72.7 19 0.0014 29.7 11.2 99 70-171 254-362 (387)
4 d1qvra2 c.37.1.20 (A:149-535) 70.8 10 0.00074 31.4 9.0 49 134-182 291-339 (387)
5 d1vcsa1 a.47.2.1 (A:8-96) Vesi 57.8 23 0.0017 23.6 8.1 48 95-158 39-86 (89)
6 d2py8a1 a.280.1.1 (A:2-121) Ru 50.2 21 0.0015 25.7 6.3 62 48-111 54-116 (120)
7 d1seta1 a.2.7.1 (A:1-110) Sery 47.7 35 0.0025 22.7 8.7 28 115-142 68-95 (110)
8 d2d8da1 a.130.1.1 (A:3-82) Cho 47.1 19 0.0014 22.9 5.3 35 113-147 3-37 (80)
9 d2ooca1 a.24.10.6 (A:8-111) Hi 45.9 17 0.0013 24.3 5.1 58 67-130 37-94 (104)
10 d2peoa1 a.280.1.1 (A:1-115) Ru 45.7 22 0.0016 25.2 5.8 58 48-107 54-112 (115)
11 d1fxkc_ a.2.5.1 (C:) Prefoldin 45.4 28 0.0021 23.6 6.3 39 136-174 5-43 (133)
12 d1ybza1 a.130.1.1 (A:2-75) mon 43.9 22 0.0016 22.6 5.1 36 113-148 3-38 (74)
13 d1ecma_ a.130.1.1 (A:) Chorism 42.4 23 0.0016 22.9 5.1 35 113-147 3-37 (91)
14 d2azeb1 e.63.1.2 (B:201-301) T 42.0 23 0.0017 24.3 5.3 34 114-147 4-37 (101)
15 d1fxka_ a.2.5.1 (A:) Prefoldin 36.5 54 0.0039 21.7 8.5 63 114-176 4-85 (107)
16 d2azeb1 e.63.1.2 (B:201-301) T 33.5 48 0.0035 22.6 5.9 35 120-154 3-37 (101)
17 d1vcsa1 a.47.2.1 (A:8-96) Vesi 29.9 38 0.0028 22.4 4.7 24 155-178 66-89 (89)
18 d2piha1 a.281.1.1 (A:2-124) Un 28.3 80 0.0058 21.2 9.7 75 98-174 7-83 (123)
19 d1vf7a_ f.46.1.1 (A:) Multidru 26.9 44 0.0032 23.6 4.9 20 158-177 86-105 (237)
20 d1ykhb1 a.252.1.1 (B:2-130) RN 24.4 1.1E+02 0.0079 21.4 9.0 73 60-146 54-126 (129)
21 d2oeea1 a.281.1.2 (A:3-112) Hy 24.3 85 0.0062 20.5 5.8 19 99-117 3-21 (110)
22 d2h9da1 a.130.1.1 (A:1-94) Sal 24.3 54 0.0039 21.4 4.6 40 109-148 6-45 (94)
23 d1fxkc_ a.2.5.1 (C:) Prefoldin 21.5 1.1E+02 0.0079 20.4 11.0 36 59-94 5-40 (133)
24 d1wa8a1 a.25.3.1 (A:1-99) ESAT 20.1 1E+02 0.0073 19.4 6.1 59 121-179 8-82 (99)
No 1
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=75.91 E-value=9.2 Score=25.88 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=33.7
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Q 030034 110 LRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA 175 (184)
Q Consensus 110 lRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~ 175 (184)
+-.+-.+-.+...+..+++.|.+.|..++.+|-....+ ....-.+++-.|+.+|..+..++..+
T Consensus 27 ld~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~--~~~~l~~~~k~lk~~i~~le~~~~~~ 90 (110)
T d1seta1 27 LEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPE--EKEALIARGKALGEEAKRLEEALREK 90 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555666677777777777777766443332 11122334444555555555554443
No 2
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=75.40 E-value=2.9 Score=28.70 Aligned_cols=74 Identities=11% Similarity=0.193 Sum_probs=42.1
Q ss_pred HHHHhhhhhhhhhhcchhHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 030034 98 ELFDRGLKLEVELRASEPVRAEVVQLRAEV------------QKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADI 165 (184)
Q Consensus 98 el~ek~~KmEaelRa~e~~k~El~Q~r~e~------------q~L~~~RQELt~qvq~ltqeL~r~~~d~qqip~l~aEi 165 (184)
.+..+...+|+++.-.+-+-.||..+-.|. +....+..+|..++..+..++.++. +|+-.+..++
T Consensus 19 ~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~---~q~~~l~~~l 95 (107)
T d1fxka_ 19 AISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIE---RQEERVMKKL 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 344444455555555555555555443331 3345566677777777777766654 3455666777
Q ss_pred HHHHHHHHH
Q 030034 166 DGIRSELVE 174 (184)
Q Consensus 166 d~lrqElqr 174 (184)
+.++.+|+.
T Consensus 96 ~~~~~~l~~ 104 (107)
T d1fxka_ 96 QEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 777666653
No 3
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=72.68 E-value=19 Score=29.71 Aligned_cols=99 Identities=13% Similarity=0.192 Sum_probs=44.0
Q ss_pred HHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 70 ELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (184)
Q Consensus 70 eL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~ 149 (184)
+|...+.++..+..-...++.|++... .++..+++.++-..+.-.+.+..--...+.+...=++|..++..+..++.
T Consensus 254 el~~ler~I~qLe~E~~aL~ke~d~~s---~~rl~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~lr~~le 330 (387)
T d1qvra2 254 EIDALERKKLQLEIEREALKKEKDPDS---QERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIE 330 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCSSHHH---HSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHH---HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666554322 23333333333333222222222222222222222333344444444443
Q ss_pred HHHH----------hhhhHHHHHHHHHHHHHH
Q 030034 150 RLEA----------ENKQLIAMRADIDGIRSE 171 (184)
Q Consensus 150 r~~~----------d~qqip~l~aEid~lrqE 171 (184)
.++. ....+|.++.+++.+..+
T Consensus 331 ~A~r~gd~e~AaeL~y~~ip~le~el~~l~~~ 362 (387)
T d1qvra2 331 LAERQYDLNRAAELRYGELPKLEAEVEALSEK 362 (387)
T ss_dssp HHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 3331 124567777777776544
No 4
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=70.77 E-value=10 Score=31.43 Aligned_cols=49 Identities=20% Similarity=0.199 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhccc
Q 030034 134 RQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARFEIRYF 182 (184)
Q Consensus 134 RQELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr~Raa~EyE 182 (184)
-.+|..+...++........-..++-.++.+|+.++.++..+....+|+
T Consensus 291 l~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~lr~~le~A~r~gd~e 339 (387)
T d1qvra2 291 IAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLN 339 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 3344445555555566666666777778888888888776665555554
No 5
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=57.78 E-value=23 Score=23.62 Aligned_cols=48 Identities=19% Similarity=0.346 Sum_probs=31.4
Q ss_pred hHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 030034 95 HTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158 (184)
Q Consensus 95 q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqi 158 (184)
.+-+..+=+.+||-|+|++.+ +.|..+.+++.....||.+++.+.++.
T Consensus 39 ~leEA~ell~qMelEvr~~p~----------------s~R~~~~~klr~Yk~dl~~lk~elk~a 86 (89)
T d1vcsa1 39 QLEEARELLEQMDLEVREIPP----------------QSRGMYSNRMRSYKQEMGKLETDFKRS 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHTTSCT----------------TTHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCH----------------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444555566666666643 468888888888877777777666553
No 6
>d2py8a1 a.280.1.1 (A:2-121) RuBisCo chaperone RbcX {Synechocystis sp., strain PCC 6803 [TaxId: 1143]}
Probab=50.18 E-value=21 Score=25.73 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=47.3
Q ss_pred HHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHh-hhhhhhhhhhHHhHHHHHHhhhhhhhhhh
Q 030034 48 REMHRIISENRHAIDDNTHLQRELTASKDEIHRLG-QIIPKLRADKEAHTRELFDRGLKLEVELR 111 (184)
Q Consensus 48 ~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~-~~i~~i~ae~e~q~Rel~ek~~KmEaelR 111 (184)
.=|+.|+.+|+.||--.+.-|.-++.---|. +. .....|+..+-.++|..++|...++..+-
T Consensus 54 ~fl~~L~~e~~~lAlRIm~vRe~lAeev~d~--l~emv~~~I~~~N~e~~Rq~Ler~t~~~~~~~ 116 (120)
T d2py8a1 54 TFLTELLDENKELVLRILAVREDIAESVLDF--LPGMTRNSLAESNIAHRRHLLERLTRTVAEVD 116 (120)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHGGG--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3478999999999999999998887532222 22 34457888888999999999999887553
No 7
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=47.72 E-value=35 Score=22.73 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 115 PVRAEVVQLRAEVQKLNSSRQELTTQIK 142 (184)
Q Consensus 115 ~~k~El~Q~r~e~q~L~~~RQELt~qvq 142 (184)
.+++++..+..+++.|...-+++..+++
T Consensus 68 ~l~~~~k~lk~~i~~le~~~~~~~~~l~ 95 (110)
T d1seta1 68 ALIARGKALGEEAKRLEEALREKEARLE 95 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554444444444433
No 8
>d2d8da1 a.130.1.1 (A:3-82) Chorismate mutase domain of P-protein {Thermus thermophilus [TaxId: 274]}
Probab=47.08 E-value=19 Score=22.86 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=30.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (184)
Q Consensus 113 ~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqe 147 (184)
.+.+|.++..+-.++-.|...|.+++.+|-.+.+.
T Consensus 3 L~~lR~~ID~iD~~i~~Ll~~R~~~~~~i~~~K~~ 37 (80)
T d2d8da1 3 IQALRKEVDRVNREILRLLSERGRLVQEIGRLQTE 37 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35899999999999999999999999888877665
No 9
>d2ooca1 a.24.10.6 (A:8-111) Histidine phosphotransferase ShpA {Caulobacter crescentus [TaxId: 155892]}
Probab=45.86 E-value=17 Score=24.31 Aligned_cols=58 Identities=17% Similarity=0.107 Sum_probs=44.3
Q ss_pred HHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q 030034 67 LQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKL 130 (184)
Q Consensus 67 LrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L 130 (184)
|.++....+.-.|.|+-..+.+-+.+ |.+-+..||...++.+.+..++.++-.++...
T Consensus 37 l~~d~~~~~~~aH~LKGsa~~iGa~~------L~~~a~~lE~~~~~~~~~~~~l~~~~~~i~~~ 94 (104)
T d2ooca1 37 LDPTHPGWKDAVHTVKGAARGVGAFN------LGEVCERCEAGQESLEGVRTALDAALLDIAAY 94 (104)
T ss_dssp CSTTSTTHHHHHHHHHHHHHHHTCHH------HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHhHHHHcCHHH------HHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 45567778888888888888877754 66777888888999888888888876665544
No 10
>d2peoa1 a.280.1.1 (A:1-115) RuBisCo chaperone RbcX {Anabaena sp. [TaxId: 1167]}
Probab=45.75 E-value=22 Score=25.25 Aligned_cols=58 Identities=7% Similarity=0.153 Sum_probs=44.4
Q ss_pred HHHHHHHHhhhhhHHhhHHHHHHHHhhHHHHHHHh-hhhhhhhhhhHHhHHHHHHhhhhhh
Q 030034 48 REMHRIISENRHAIDDNTHLQRELTASKDEIHRLG-QIIPKLRADKEAHTRELFDRGLKLE 107 (184)
Q Consensus 48 ~EiqrLl~dNqRLAathvaLrqeL~aaq~El~~l~-~~i~~i~ae~e~q~Rel~ek~~KmE 107 (184)
.=|..|+.+|+.||--.+.-|.-++ +....-++ .....|+..+-..+|+.+++...++
T Consensus 54 ~~l~~L~~e~~~lA~RIm~vR~~ya--e~~~e~~~e~~~~~I~~~N~elmR~~Ler~t~~~ 112 (115)
T d2peoa1 54 KYIEELFLEKPDLALRIMTVREHIA--EEIAEFLPEMVVTGIQQANMEKRRQHLERMTQVS 112 (115)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH--HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3478999999999998888888874 44443333 4566788888889999999888775
No 11
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=45.37 E-value=28 Score=23.65 Aligned_cols=39 Identities=13% Similarity=0.251 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 030034 136 ELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVE 174 (184)
Q Consensus 136 ELt~qvq~ltqeL~r~~~d~qqip~l~aEid~lrqElqr 174 (184)
+|.++++.+.+++..+++...++-...+|++.+..-|..
T Consensus 5 eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~ 43 (133)
T d1fxkc_ 5 EIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSD 43 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555544443
No 12
>d1ybza1 a.130.1.1 (A:2-75) mono-domain chorismate mutase {Pyrococcus furiosus [TaxId: 2261]}
Probab=43.87 E-value=22 Score=22.61 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=31.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDV 148 (184)
Q Consensus 113 ~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL 148 (184)
.+.+|+++..+-.++=.|.+.|-+++.+|-.+.++.
T Consensus 3 L~~lR~~ID~iD~~i~~Ll~~R~~~~~~I~~~K~~~ 38 (74)
T d1ybza1 3 LKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKKEL 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 468999999999999999999999999998877654
No 13
>d1ecma_ a.130.1.1 (A:) Chorismate mutase domain of P-protein {Escherichia coli [TaxId: 562]}
Probab=42.35 E-value=23 Score=22.93 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=30.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (184)
Q Consensus 113 ~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqe 147 (184)
.+.+|.++..+-.++-.|...|-+|+.+|-.+.+.
T Consensus 3 L~~lR~~ID~iD~~i~~Ll~~R~~l~~~I~~~K~~ 37 (91)
T d1ecma_ 3 LLALREKISALDEKLLALLAERRELAVEVGKAKLL 37 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999998877654
No 14
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.96 E-value=23 Score=24.33 Aligned_cols=34 Identities=29% Similarity=0.349 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (184)
Q Consensus 114 e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqe 147 (184)
..+++|+..+..+-+.|....+.+..+++.+|.|
T Consensus 4 ~~L~~El~~L~~~E~~LD~li~~~~~~L~~lted 37 (101)
T d2azeb1 4 EGLTQDLRQLQESEQQLDHLMNICTTQLRLLSED 37 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3577777777777777777777777777777765
No 15
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=36.54 E-value=54 Score=21.73 Aligned_cols=63 Identities=13% Similarity=0.225 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh----------------hhhHHHHHHHHHHHHHHHHH
Q 030034 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGL---TKDVNRLEAE----------------NKQLIAMRADIDGIRSELVE 174 (184)
Q Consensus 114 e~~k~El~Q~r~e~q~L~~~RQELt~qvq~l---tqeL~r~~~d----------------~qqip~l~aEid~lrqElqr 174 (184)
+..=+.+.+++.+++.+.+.++.|.++++.. -.+|..+-.| ..-+|.|..-++.+..++..
T Consensus 4 qe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~ 83 (107)
T d1fxka_ 4 QHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKT 83 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788888888888888888865543 3455554433 23356666777777766655
Q ss_pred hh
Q 030034 175 AR 176 (184)
Q Consensus 175 ~R 176 (184)
+=
T Consensus 84 l~ 85 (107)
T d1fxka_ 84 IE 85 (107)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 16
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.46 E-value=48 Score=22.58 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030034 120 VVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE 154 (184)
Q Consensus 120 l~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d 154 (184)
++++++|+.+|...-+.|-..++.+++.|.-+..|
T Consensus 3 ~~~L~~El~~L~~~E~~LD~li~~~~~~L~~lted 37 (101)
T d2azeb1 3 LEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSED 37 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 56788999999999999999998888888877733
No 17
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.90 E-value=38 Score=22.42 Aligned_cols=24 Identities=4% Similarity=0.364 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhh
Q 030034 155 NKQLIAMRADIDGIRSELVEARFE 178 (184)
Q Consensus 155 ~qqip~l~aEid~lrqElqr~Raa 178 (184)
+.+|=.-++|++.|+.|+.++|-|
T Consensus 66 ~~klr~Yk~dl~~lk~elk~a~~a 89 (89)
T d1vcsa1 66 SNRMRSYKQEMGKLETDFKRSRIA 89 (89)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Confidence 345667899999999999999864
No 18
>d2piha1 a.281.1.1 (A:2-124) Uncharacterized protein YmcA {Bacillus subtilis [TaxId: 1423]}
Probab=28.32 E-value=80 Score=21.17 Aligned_cols=75 Identities=23% Similarity=0.309 Sum_probs=35.7
Q ss_pred HHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHH
Q 030034 98 ELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL--IAMRADIDGIRSELVE 174 (184)
Q Consensus 98 el~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d~qqi--p~l~aEid~lrqElqr 174 (184)
++++++..|...|+.++.++. +..+...+..= ..=+.|-.+.+.+.+++...+.-.+.. .....+++.+..++..
T Consensus 7 ~I~d~A~eL~~~I~~s~ey~~-~~~a~~~v~~d-~ea~~li~~f~~~q~~~q~~q~~g~~~~~~e~~~el~~l~~~l~~ 83 (123)
T d2piha1 7 DIVQQARNLAKMISETEEVDF-FKRAEAQINEN-DKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQEELEE 83 (123)
T ss_dssp HHHHHHHHHHHHHTTBHHHHH-HHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHH-HHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhc
Confidence 577777788877777776653 22222222111 111223333444444555444333322 2444555555555543
No 19
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=26.91 E-value=44 Score=23.61 Aligned_cols=20 Identities=15% Similarity=0.112 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 030034 158 LIAMRADIDGIRSELVEARF 177 (184)
Q Consensus 158 ip~l~aEid~lrqElqr~Ra 177 (184)
+....+.++.++..+..++.
T Consensus 86 ~~~~~~~~~~a~~~l~~a~~ 105 (237)
T d1vf7a_ 86 YADANAAYLQSKAAVEQARI 105 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcchhHHHHHHHhh
Confidence 33344444444444444443
No 20
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.45 E-value=1.1e+02 Score=21.39 Aligned_cols=73 Identities=14% Similarity=0.220 Sum_probs=45.5
Q ss_pred hHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHHhHHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 60 AIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTT 139 (184)
Q Consensus 60 LAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~q~Rel~ek~~KmEaelRa~e~~k~El~Q~r~e~q~L~~~RQELt~ 139 (184)
|.+.-..|-.+|+..-+.+-.|-..++.+-.-.|.|. .++.+||.|++..+ +|+. +......+|..
T Consensus 54 f~~~~~elA~dii~kakqId~LI~sLP~~~~see~Q~----~~i~~Le~E~~~~~---~el~-------~~v~e~e~ll~ 119 (129)
T d1ykhb1 54 FSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQL----RKIDMLQKKLVEVE---DEKI-------EAIKKKEKLMR 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHHH----HHHHHHHHHHHHHH---HHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCCHHHHH----HHHHHHHHHHHHHH---HHHH-------HHHHHHHHHHH
Confidence 4455556677888888889999888888876666655 45577776665433 2333 33333444555
Q ss_pred HHHHHHH
Q 030034 140 QIKGLTK 146 (184)
Q Consensus 140 qvq~ltq 146 (184)
+|+.+-.
T Consensus 120 ~i~~~i~ 126 (129)
T d1ykhb1 120 HVDSMIE 126 (129)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 21
>d2oeea1 a.281.1.2 (A:3-112) Hypothetical protein YheA {Bacillus subtilis [TaxId: 1423]}
Probab=24.33 E-value=85 Score=20.52 Aligned_cols=19 Identities=37% Similarity=0.538 Sum_probs=13.9
Q ss_pred HHHhhhhhhhhhhcchhHH
Q 030034 99 LFDRGLKLEVELRASEPVR 117 (184)
Q Consensus 99 l~ek~~KmEaelRa~e~~k 117 (184)
+||++..|...|+.++.++
T Consensus 3 Iyd~A~eL~~~I~~s~ey~ 21 (110)
T d2oeea1 3 FYDVAYDLENALRGSEEFT 21 (110)
T ss_dssp HHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHHHHHcCHHHH
Confidence 6777777777777777664
No 22
>d2h9da1 a.130.1.1 (A:1-94) Salicylate biosynthesis protein PchB {Pseudomonas aeruginosa [TaxId: 287]}
Probab=24.30 E-value=54 Score=21.38 Aligned_cols=40 Identities=5% Similarity=0.137 Sum_probs=31.8
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030034 109 ELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDV 148 (184)
Q Consensus 109 elRa~e~~k~El~Q~r~e~q~L~~~RQELt~qvq~ltqeL 148 (184)
+--+.+.+|+++..+-.++=.|.+.|..++.+|-.+.++.
T Consensus 6 d~~~L~~lR~~ID~ID~~i~~LL~~R~~l~~~i~~~K~~~ 45 (94)
T d2h9da1 6 DCTGLADIREAIDRIDLDIVQALGRRMDYVKAASRFKASE 45 (94)
T ss_dssp GCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence 3445678999999999999999999999999988776543
No 23
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=21.54 E-value=1.1e+02 Score=20.38 Aligned_cols=36 Identities=8% Similarity=0.151 Sum_probs=26.0
Q ss_pred hhHHhhHHHHHHHHhhHHHHHHHhhhhhhhhhhhHH
Q 030034 59 HAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEA 94 (184)
Q Consensus 59 RLAathvaLrqeL~aaq~El~~l~~~i~~i~ae~e~ 94 (184)
.|++..-.|++++...+..+..++..+.++..=.+.
T Consensus 5 eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~ 40 (133)
T d1fxkc_ 5 EIVAQLNIYQSQVELIQQQMEAVRATISELEILEKT 40 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777888888888888888777776655543
No 24
>d1wa8a1 a.25.3.1 (A:1-99) ESAT-6 like protein EsxB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=20.08 E-value=1e+02 Score=19.37 Aligned_cols=59 Identities=17% Similarity=0.292 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------hhhHHHHHHHHHHHHHHHHHhhhhh
Q 030034 121 VQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE----------------NKQLIAMRADIDGIRSELVEARFEI 179 (184)
Q Consensus 121 ~Q~r~e~q~L~~~RQELt~qvq~ltqeL~r~~~d----------------~qqip~l~aEid~lrqElqr~Raa~ 179 (184)
..++.-+.++.....+|.+.+..|...+..+.+. .+.+-.|...|+.+...|..+...|
T Consensus 8 ~~l~~~A~~~~~~~~~l~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~~~L~~aa~~y 82 (99)
T d1wa8a1 8 ATLAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQAGVQY 82 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666665421 2334445555555555555554444
Done!