BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030035
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NV0|A Chain A, Structure Of The Glutaminase Subunit Pdx2 (Yaae) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV0|B Chain B, Structure Of The Glutaminase Subunit Pdx2 (Yaae) Of Plp
Synthase From Bacillus Subtilis
Length = 196
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 102/160 (63%), Gaps = 9/160 (5%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
+ +GVL LQG+ EHI A++ G G+ +++P+QL V LI+PGGESTTM RL + +
Sbjct: 2 LTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTMRRLIDTYQF 61
Query: 61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
LREF GKP++GTCAGLI LA + G +G L+ V RN FG Q+ SFEA
Sbjct: 62 MEPLREFAAQGKPMFGTCAGLIILAKEIAGSD---NPHLGLLNVVVERNSFGRQVDSFEA 118
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160
+L++ L E F GVFIRAP +L+ G +V+VL+++
Sbjct: 119 DLTIKGL------DEPFTGVFIRAPHILEAGENVEVLSEH 152
>pdb|2NV2|B Chain B, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|D Chain D, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|F Chain F, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|H Chain H, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|J Chain J, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|L Chain L, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|N Chain N, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|P Chain P, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|R Chain R, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|T Chain T, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|V Chain V, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|X Chain X, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
Length = 204
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 102/160 (63%), Gaps = 9/160 (5%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
+ +GVL LQG+ EHI A++ G G+ +++P+QL V LI+PGGESTTM RL + +
Sbjct: 2 LTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTMRRLIDTYQF 61
Query: 61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
LREF GKP++GTCAGLI LA + G +G L+ V RN FG Q+ SFEA
Sbjct: 62 MEPLREFAAQGKPMFGTCAGLIILAKEIAGSD---NPHLGLLNVVVERNSFGRQVDSFEA 118
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160
+L++ L E F GVFIRAP +L+ G +V+VL+++
Sbjct: 119 DLTIKGL------DEPFTGVFIRAPHILEAGENVEVLSEH 152
>pdb|1R9G|A Chain A, Three-Dimensional Structure Of Yaae From Bacillus Subtilis
pdb|1R9G|B Chain B, Three-Dimensional Structure Of Yaae From Bacillus Subtilis
Length = 216
Score = 138 bits (347), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/160 (45%), Positives = 100/160 (62%), Gaps = 9/160 (5%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
+ +GVL LQG+ EHI A++ G G+ +++P+QL V LI+PGGESTT RL + +
Sbjct: 22 LTIGVLGLQGAVREHIHAIEACGAAGLVVKRPEQLNEVDGLILPGGESTTXRRLIDTYQF 81
Query: 61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
LREF GKP +GTCAGLI LA + G +G L+ V RN FG Q+ SFEA
Sbjct: 82 XEPLREFAAQGKPXFGTCAGLIILAKEIAGSD---NPHLGLLNVVVERNSFGRQVDSFEA 138
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160
+L++ L E F GVFIRAP +L+ G +V+VL+++
Sbjct: 139 DLTIKGL------DEPFTGVFIRAPHILEAGENVEVLSEH 172
>pdb|2ISS|D Chain D, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
pdb|2ISS|E Chain E, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
pdb|2ISS|F Chain F, Structure Of The Plp Synthase Holoenzyme From Thermotoga
Maritima
Length = 208
Score = 135 bits (340), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 103/160 (64%), Gaps = 8/160 (5%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
M +GVL +QG EH+ AL +LGV+ + ++ P+QL V LI+PGGESTTM R+ + ++
Sbjct: 21 MKIGVLGVQGDVREHVEALHKLGVETLIVKLPEQLDMVDGLILPGGESTTMIRILKEMDM 80
Query: 61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
L E + G PV+ TCAG+I LA + K QE +G LD TV RN +G Q++SFE
Sbjct: 81 DEKLVERINNGLPVFATCAGVILLAKRI---KNYSQEKLGVLDITVERNAYGRQVESFET 137
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160
+ +PA+ G + FR +FIRAP +++ G +V++LA Y
Sbjct: 138 FVEIPAV-----GKDPFRAIFIRAPRIVETGKNVEILATY 172
>pdb|1Q7R|A Chain A, X-Ray Crystallographic Analysis Of A Predicted
Amidotransferase From B. Stearothermophilus At 1.9 A
Resolution
Length = 219
Score = 135 bits (340), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 100/158 (63%), Gaps = 9/158 (5%)
Query: 3 VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFP 62
+GVL LQG+ EH+ A++ G + V ++K +QL+ + L++PGGESTT RL + + L
Sbjct: 26 IGVLGLQGAVREHVRAIEACGAEAVIVKKSEQLEGLDGLVLPGGESTTXRRLIDRYGLXE 85
Query: 63 ALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAEL 122
L++F GKP +GTCAGLI LA + VG + +G D TV RN FG Q +SFEAEL
Sbjct: 86 PLKQFAAAGKPXFGTCAGLILLAKRIVGYD---EPHLGLXDITVERNSFGRQRESFEAEL 142
Query: 123 SVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160
S+ + + F GVFIRAP +++ G VDVLA Y
Sbjct: 143 SIKGVG------DGFVGVFIRAPHIVEAGDGVDVLATY 174
>pdb|2YWD|A Chain A, Crystal Structure Of Glutamine Amidotransferase
Length = 191
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/183 (46%), Positives = 112/183 (61%), Gaps = 15/183 (8%)
Query: 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLF 61
VVGVLALQG F EH ALKRLG++ E+RK + L+ + +LI+PGGESTT+ +LA + +
Sbjct: 4 VVGVLALQGDFREHKEALKRLGIEAKEVRKKEHLEGLKALIVPGGESTTIGKLAREYGIE 63
Query: 62 PALREFVKMGK-PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
+R+ V+ G ++GTCAG I+LA + VG Q +G L+ V RN FG Q++SFE
Sbjct: 64 DEVRKRVEEGSLALFGTCAGAIWLAKEIVGYP--EQPRLGVLEAWVERNAFGRQVESFEE 121
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLA---DYP--VPSNKVLYSSSTVE 175
+L V L S F GVFIRAP +G V+VLA D P V KVL SS E
Sbjct: 122 DLEVEGLGS-------FHGVFIRAPVFRRLGEGVEVLARLGDLPVLVRQGKVLASSFHPE 174
Query: 176 IQE 178
+ E
Sbjct: 175 LTE 177
>pdb|2ABW|A Chain A, Glutaminase Subunit Of The Plasmodial Plp Synthase
(Vitamin B6 Biosynthesis)
pdb|2ABW|B Chain B, Glutaminase Subunit Of The Plasmodial Plp Synthase
(Vitamin B6 Biosynthesis)
Length = 227
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 92/175 (52%), Gaps = 13/175 (7%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKG---VEIRKPDQLQNVSSLIIPGGESTTMARLAEY 57
+ +GVL+LQG F HI +L + +++R L L+IPGGESTT+ R Y
Sbjct: 4 ITIGVLSLQGDFEPHINHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVRRCCAY 63
Query: 58 HN--LFPALREFVK-MGKPVWGTCAGLIFLANKAVGQKL----GGQELVGGLDCTVHRNF 110
N L+ AL F+ + KP+WGTCAG I L+ KL G + GGLD T+ RNF
Sbjct: 64 ENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNF 123
Query: 111 FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD-VDVLADYPVPS 164
+GSQ SF L++ ++ + IRAP + ++ D V VLA + S
Sbjct: 124 YGSQNDSFICSLNI--ISDSSAFKKDLTAACIRAPYIREILSDEVKVLATFSHES 176
>pdb|4ADS|G Chain G, Crystal Structure Of Plasmodial Plp Synthase Complex
pdb|4ADS|H Chain H, Crystal Structure Of Plasmodial Plp Synthase Complex
pdb|4ADS|I Chain I, Crystal Structure Of Plasmodial Plp Synthase Complex
pdb|4ADS|J Chain J, Crystal Structure Of Plasmodial Plp Synthase Complex
pdb|4ADS|K Chain K, Crystal Structure Of Plasmodial Plp Synthase Complex
pdb|4ADS|L Chain L, Crystal Structure Of Plasmodial Plp Synthase Complex
Length = 217
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 91/171 (53%), Gaps = 13/171 (7%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKG---VEIRKPDQLQNVSSLIIPGGESTTMARLAEY 57
+ +GVL+LQG F HI +L + +++R L L+IPGGESTT+ R Y
Sbjct: 2 ITIGVLSLQGDFEPHINHFIKLQIPSLNIIQVRNVHDLGLCDGLVIPGGESTTVRRCCAY 61
Query: 58 HN--LFPALREFVK-MGKPVWGTCAGLIFLANKAVGQKL----GGQELVGGLDCTVHRNF 110
N L+ AL F+ + KP+WGTCAG I L+ KL G + GGLD T+ RNF
Sbjct: 62 ENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKLYSNFGNKFSFGGLDITICRNF 121
Query: 111 FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD-VDVLADY 160
+GSQ SF L++ ++ + IRAP + ++ D V VLA +
Sbjct: 122 YGSQNDSFICSLNI--ISDSSAFKKDLTAACIRAPYIREILSDEVKVLATF 170
>pdb|2YWJ|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Methanocaldococcus Jannaschii
Length = 186
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 91/159 (57%), Gaps = 15/159 (9%)
Query: 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNL 60
M++GVLA+QG EH A+K+ G + ++++ + L+ + +LIIPGGEST + +L + + L
Sbjct: 1 MIIGVLAIQGDVEEHEEAIKKAGYEAKKVKRVEDLEGIDALIIPGGESTAIGKLMKKYGL 60
Query: 61 FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120
++ P+ GTCAG++ L+ K G Q L+ +D TV RN +G Q+ SFE
Sbjct: 61 LEKIKN---SNLPILGTCAGMVLLS-KGTGI---NQILLELMDITVKRNAYGRQVDSFEK 113
Query: 121 ELSVPALASQEGGPETFRGVFIRAPAVLDV-GPDVDVLA 158
E+ L GVFIRAP V + DV+V+A
Sbjct: 114 EIEFKDLGK-------VYGVFIRAPVVDKILSDDVEVIA 145
>pdb|1OI4|A Chain A, Crystal Structure Of Yhbo From Escherichia Coli
pdb|1OI4|B Chain B, Crystal Structure Of Yhbo From Escherichia Coli
Length = 193
Score = 33.1 bits (74), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 39 SSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG--LIFLANKAVGQKL 93
+L++PGG S R F R+FV GKPV+ C G L+ A+ G+KL
Sbjct: 88 DALLLPGGHSPDYLRGDNRFVTF--TRDFVNSGKPVFAICHGPQLLISADVIRGRKL 142
>pdb|1OX4|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Query: 2 VVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPD--QLQNVSSLIIPGGESTTMARLAEY- 57
VV V+ ++ G+ A++ LG + ++ P + S LI+PG + +
Sbjct: 6 VVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPG-----VGNYGHFV 60
Query: 58 HNLF-----PALREFVKMGKPVWGTCAGL 81
NLF +RE+++ GKP+ G C GL
Sbjct: 61 DNLFNRGFEKPIREYIESGKPIMGICVGL 89
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 9 QGSFNE-HIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREF 67
G FN IA + G + R+ D LII GGE+ ++ FP + +
Sbjct: 374 NGYFNTGDIAEIDHEGYVMIYDRRKD-------LIISGGENIYPYQIETVAKQFPGISDA 426
Query: 68 VKMGKP--VWGTCAGLIFLANKAVGQ 91
V +G P WG L F++ + +
Sbjct: 427 VCVGHPDDTWGQVPKLYFVSESDISK 452
>pdb|2VPI|A Chain A, Human Gmp Synthetase - Glutaminase Domain
pdb|2VPI|B Chain B, Human Gmp Synthetase - Glutaminase Domain
Length = 218
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVG 90
Q ++II GG ++ A A + + PA+ +GKPV G C G+ + NK G
Sbjct: 66 QGFRAIIISGGPNSVYAEDAPWFD--PAI---FTIGKPVLGICYGMQMM-NKVFG 114
>pdb|2VXO|A Chain A, Human Gmp Synthetase In Complex With Xmp
pdb|2VXO|B Chain B, Human Gmp Synthetase In Complex With Xmp
Length = 697
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVG 90
Q ++II GG ++ A A + + PA+ +GKPV G C G+ + NK G
Sbjct: 71 QGFRAIIISGGPNSVYAEDAPWFD--PAI---FTIGKPVLGICYGMQMM-NKVFG 119
>pdb|1YM5|A Chain A, Crystal Structure Of Yhi9, The Yeast Member Of The
Phenazine Biosynthesis Phzf Enzyme Superfamily
Length = 300
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 8/97 (8%)
Query: 60 LFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFE 119
+F E G P G+C + L + +G + T++ SF+
Sbjct: 70 IFTPRSELPFAGHPTIGSCKAFLEFTKNTTATSLVQECKIGAVPITINEGLI-----SFK 124
Query: 120 AELSVPALASQEGGPETFRGV---FIRAPAVLDVGPD 153
A ++ S E + + + FI+ PA+L GP+
Sbjct: 125 APMADYESISSEMIADYEKAIGLKFIKPPALLHTGPE 161
>pdb|3UK7|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dj-1d
pdb|3UK7|B Chain B, Crystal Structure Of Arabidopsis Thaliana Dj-1d
pdb|3UK7|C Chain C, Crystal Structure Of Arabidopsis Thaliana Dj-1d
Length = 396
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 34 QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKL 93
L L+IPGG + LA ++ ++EF + GKP+ G + LA
Sbjct: 86 DLSKYDGLVIPGGRAPEY--LALTASVVELVKEFSRSGKPIASIXHGQLILA-------- 135
Query: 94 GGQELVGGLDCTVH 107
+ V G CT +
Sbjct: 136 -AADTVNGRKCTAY 148
>pdb|1JVN|A Chain A, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1JVN|B Chain B, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE SITES
pdb|1OX4|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX5|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
Query: 2 VVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPD--QLQNVSSLIIPGGESTTMARLAEY- 57
VV V+ ++ G+ A++ LG + ++ P + S LI+PG + +
Sbjct: 6 VVHVIDVESGNLQSLTNAIEHLGYEVQLVKSPKDFNISGTSRLILPG-----VGNYGHFV 60
Query: 58 HNLF-----PALREFVKMGKPVWGTCAGL 81
NLF +RE+++ GKP+ G GL
Sbjct: 61 DNLFNRGFEKPIREYIESGKPIMGIXVGL 89
>pdb|1L9X|A Chain A, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|B Chain B, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|C Chain C, Structure Of Gamma-Glutamyl Hydrolase
pdb|1L9X|D Chain D, Structure Of Gamma-Glutamyl Hydrolase
Length = 315
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 10/89 (11%)
Query: 35 LQNVSSLIIPGG----ESTTMARLAE-YHNLFPALREFVKMGK-PVWGTCAGLIFLANKA 88
++++ ++ PGG + A++A+ ++NL +++ F PVWGTC G L+
Sbjct: 84 FKSINGILFPGGSVDLRRSDYAKVAKIFYNL--SIQSFDDGDYFPVWGTCLGFEELSLLI 141
Query: 89 VGQKLGGQELVGGLDCTVHRNFFGSQIQS 117
G+ L +D + NF G Q+ S
Sbjct: 142 SGECL--LTATDTVDVAMPLNFTGGQLHS 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,447,994
Number of Sequences: 62578
Number of extensions: 217360
Number of successful extensions: 538
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 508
Number of HSP's gapped (non-prelim): 18
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)