Query 030035
Match_columns 184
No_of_seqs 333 out of 2456
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:30:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030035.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030035hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0311 PDX2 Predicted glutami 100.0 7.8E-50 1.7E-54 313.6 14.4 164 1-170 1-165 (194)
2 PF01174 SNO: SNO glutamine am 100.0 7.5E-47 1.6E-51 299.0 12.3 155 5-168 1-158 (188)
3 PLN02832 glutamine amidotransf 100.0 1.1E-43 2.3E-48 294.3 18.6 165 1-165 2-166 (248)
4 PRK13526 glutamine amidotransf 100.0 2.3E-42 4.9E-47 273.7 15.1 150 1-167 3-152 (179)
5 TIGR03800 PLP_synth_Pdx2 pyrid 100.0 3.8E-34 8.3E-39 228.5 16.6 156 2-165 1-156 (184)
6 KOG3210 Imidazoleglycerol-phos 100.0 2.2E-34 4.8E-39 223.5 6.6 158 2-163 13-179 (226)
7 cd01749 GATase1_PB Glutamine A 100.0 1.1E-31 2.3E-36 213.8 17.2 154 3-163 1-154 (183)
8 PRK13525 glutamine amidotransf 100.0 1.1E-29 2.4E-34 203.3 18.2 153 1-162 2-154 (189)
9 PRK13142 hisH imidazole glycer 100.0 8.4E-29 1.8E-33 198.7 15.4 145 2-163 1-153 (192)
10 COG0118 HisH Glutamine amidotr 100.0 2.6E-27 5.7E-32 189.2 14.1 151 1-163 2-168 (204)
11 PRK13527 glutamine amidotransf 99.9 2.5E-26 5.3E-31 185.2 16.5 157 1-163 1-165 (200)
12 CHL00188 hisH imidazole glycer 99.9 2.4E-24 5.1E-29 175.3 16.2 148 1-161 2-169 (210)
13 PRK13146 hisH imidazole glycer 99.9 4.5E-22 9.8E-27 161.7 16.2 151 1-162 2-170 (209)
14 PRK13170 hisH imidazole glycer 99.9 9.6E-22 2.1E-26 158.2 15.5 145 1-162 1-159 (196)
15 PRK14004 hisH imidazole glycer 99.9 2.5E-21 5.5E-26 157.5 15.0 135 2-145 1-155 (210)
16 PRK13152 hisH imidazole glycer 99.9 4.9E-21 1.1E-25 154.5 15.8 149 2-160 1-164 (201)
17 PRK13181 hisH imidazole glycer 99.8 4.5E-20 9.8E-25 148.5 16.1 153 2-162 1-162 (199)
18 PLN02617 imidazole glycerol ph 99.8 2.9E-19 6.3E-24 162.6 16.8 145 2-157 8-166 (538)
19 cd01748 GATase1_IGP_Synthase T 99.8 5.1E-19 1.1E-23 142.1 15.0 153 3-162 1-163 (198)
20 PRK13141 hisH imidazole glycer 99.8 1.1E-18 2.4E-23 140.9 15.6 154 2-162 1-164 (205)
21 cd03130 GATase1_CobB Type 1 gl 99.8 3.5E-19 7.7E-24 143.5 11.2 103 7-109 8-113 (198)
22 PRK13143 hisH imidazole glycer 99.8 4E-18 8.7E-23 137.5 16.3 152 1-162 1-160 (200)
23 TIGR01855 IMP_synth_hisH imida 99.8 4.4E-18 9.4E-23 136.9 14.6 151 3-161 1-158 (196)
24 PRK05665 amidotransferase; Pro 99.8 5.7E-18 1.2E-22 140.4 15.1 148 1-163 3-168 (240)
25 PRK09065 glutamine amidotransf 99.8 2.3E-18 4.9E-23 142.5 10.6 147 2-162 3-167 (237)
26 cd01750 GATase1_CobQ Type 1 gl 99.8 1.2E-17 2.7E-22 134.1 12.2 105 3-108 1-113 (194)
27 cd01741 GATase1_1 Subgroup of 99.7 2.5E-17 5.5E-22 130.8 12.3 148 2-163 1-161 (188)
28 COG0518 GuaA GMP synthase - Gl 99.7 5.5E-17 1.2E-21 131.0 12.0 145 1-163 2-157 (198)
29 KOG0623 Glutamine amidotransfe 99.7 3.2E-16 6.9E-21 134.1 12.8 136 4-151 5-154 (541)
30 PRK06895 putative anthranilate 99.7 8.9E-16 1.9E-20 122.7 14.2 140 1-163 2-151 (190)
31 PRK00758 GMP synthase subunit 99.7 4.3E-16 9.4E-21 123.7 12.2 134 3-163 2-143 (184)
32 PRK06278 cobyrinic acid a,c-di 99.7 6.4E-17 1.4E-21 145.5 8.0 101 1-107 1-105 (476)
33 PRK06490 glutamine amidotransf 99.7 6.9E-16 1.5E-20 127.9 13.2 144 1-162 8-160 (239)
34 PRK01077 cobyrinic acid a,c-di 99.7 1.5E-15 3.2E-20 136.1 15.9 117 2-118 247-373 (451)
35 cd01742 GATase1_GMP_Synthase T 99.7 9.8E-16 2.1E-20 120.9 12.4 136 3-162 1-145 (181)
36 TIGR00888 guaA_Nterm GMP synth 99.7 8.5E-16 1.9E-20 122.4 11.4 139 3-163 1-146 (188)
37 PRK07567 glutamine amidotransf 99.7 4.5E-16 9.8E-21 129.2 10.2 135 14-163 19-172 (242)
38 PRK07053 glutamine amidotransf 99.7 2E-15 4.4E-20 124.7 13.2 136 11-162 15-159 (234)
39 TIGR00379 cobB cobyrinic acid 99.6 1.4E-15 3E-20 136.3 12.6 106 2-108 246-357 (449)
40 PRK07765 para-aminobenzoate sy 99.6 9.4E-15 2E-19 119.2 15.5 139 1-163 1-154 (214)
41 COG0047 PurL Phosphoribosylfor 99.6 3.4E-15 7.4E-20 121.5 10.2 106 1-118 3-116 (231)
42 PRK08250 glutamine amidotransf 99.6 1.4E-14 3E-19 119.8 13.9 147 1-162 1-161 (235)
43 PRK00784 cobyric acid synthase 99.6 6.1E-15 1.3E-19 133.4 12.1 106 2-108 253-367 (488)
44 PRK00074 guaA GMP synthase; Re 99.6 9.9E-15 2.1E-19 132.7 13.5 138 2-163 5-151 (511)
45 PRK13896 cobyrinic acid a,c-di 99.6 6.3E-15 1.4E-19 131.4 11.8 106 2-108 235-345 (433)
46 cd01743 GATase1_Anthranilate_S 99.6 3E-14 6.5E-19 113.0 14.2 136 3-163 1-149 (184)
47 PRK03619 phosphoribosylformylg 99.6 1.8E-14 3.9E-19 117.9 12.6 101 1-113 1-109 (219)
48 PF00117 GATase: Glutamine ami 99.6 3.3E-14 7.2E-19 112.9 13.3 130 11-162 9-152 (192)
49 PRK01175 phosphoribosylformylg 99.6 2.3E-14 5E-19 120.2 12.5 115 1-119 4-135 (261)
50 TIGR01737 FGAM_synth_I phospho 99.6 1.3E-14 2.7E-19 119.4 10.6 87 1-87 1-94 (227)
51 CHL00101 trpG anthranilate syn 99.6 5.3E-14 1.2E-18 112.6 13.9 136 3-162 2-149 (190)
52 PF07685 GATase_3: CobB/CobQ-l 99.6 1.3E-13 2.7E-18 107.5 13.4 112 33-151 3-120 (158)
53 PRK06774 para-aminobenzoate sy 99.5 2.7E-13 5.9E-18 108.4 15.3 136 3-162 2-149 (191)
54 PRK08007 para-aminobenzoate sy 99.5 2.5E-13 5.3E-18 108.6 14.6 139 3-163 2-150 (187)
55 TIGR00566 trpG_papA glutamine 99.5 7.8E-13 1.7E-17 105.7 15.5 136 3-162 2-149 (188)
56 PLN02347 GMP synthetase 99.5 1.8E-13 4E-18 124.9 13.2 141 2-163 12-164 (536)
57 PRK07649 para-aminobenzoate/an 99.5 6E-13 1.3E-17 107.2 14.5 136 3-162 2-149 (195)
58 PRK05670 anthranilate synthase 99.5 6.8E-13 1.5E-17 105.9 14.5 136 3-162 2-149 (189)
59 TIGR00313 cobQ cobyric acid sy 99.5 2.2E-13 4.8E-18 122.9 11.3 105 2-108 249-361 (475)
60 cd01744 GATase1_CPSase Small c 99.5 1.2E-12 2.7E-17 103.6 13.8 83 3-90 1-88 (178)
61 TIGR01815 TrpE-clade3 anthrani 99.5 9.4E-13 2E-17 123.7 14.6 138 1-163 517-667 (717)
62 PRK05637 anthranilate synthase 99.5 4.2E-12 9.1E-17 103.3 15.6 154 2-162 3-163 (208)
63 cd01745 GATase1_2 Subgroup of 99.4 3.8E-13 8.2E-18 107.6 8.0 76 14-89 23-118 (189)
64 PLN02335 anthranilate synthase 99.4 5.1E-12 1.1E-16 103.7 14.5 141 1-163 19-174 (222)
65 PRK13566 anthranilate synthase 99.4 5.2E-12 1.1E-16 118.8 15.5 137 1-162 527-676 (720)
66 cd01740 GATase1_FGAR_AT Type 1 99.4 8.2E-13 1.8E-17 109.3 9.0 85 3-87 1-98 (238)
67 PRK08857 para-aminobenzoate sy 99.4 1.3E-11 2.9E-16 98.9 15.1 135 3-161 2-148 (193)
68 KOG3179 Predicted glutamine sy 99.4 3.7E-13 8.1E-18 107.9 5.1 82 9-90 23-112 (245)
69 PRK09522 bifunctional glutamin 99.4 1.6E-11 3.6E-16 112.1 15.5 137 1-161 2-151 (531)
70 PF13507 GATase_5: CobB/CobQ-l 99.4 1.7E-12 3.7E-17 108.8 8.0 116 1-118 2-135 (259)
71 COG0512 PabA Anthranilate/para 99.3 3.2E-11 6.9E-16 96.3 13.6 140 1-163 2-152 (191)
72 PRK12564 carbamoyl phosphate s 99.3 2.5E-11 5.5E-16 106.1 14.4 84 2-90 179-267 (360)
73 COG1797 CobB Cobyrinic acid a, 99.3 4.2E-12 9.2E-17 112.1 8.6 106 2-107 247-359 (451)
74 PF07722 Peptidase_C26: Peptid 99.3 1E-11 2.2E-16 101.5 9.1 147 13-164 27-196 (217)
75 COG1492 CobQ Cobyric acid synt 99.3 4.1E-11 8.9E-16 107.3 10.7 106 2-109 253-368 (486)
76 PLN02771 carbamoyl-phosphate s 99.2 1.7E-10 3.8E-15 102.1 14.3 83 2-90 242-329 (415)
77 PRK11366 puuD gamma-glutamyl-g 99.2 1.1E-10 2.4E-15 97.6 11.1 143 14-162 30-202 (254)
78 TIGR01857 FGAM-synthase phosph 99.2 6.9E-11 1.5E-15 116.0 11.3 119 1-120 978-1122(1239)
79 PRK06186 hypothetical protein; 99.2 4.3E-11 9.3E-16 98.5 7.1 83 1-88 2-99 (229)
80 COG3442 Predicted glutamine am 99.2 4.7E-11 1E-15 96.9 6.8 99 9-107 20-123 (250)
81 CHL00197 carA carbamoyl-phosph 99.2 2.7E-10 6E-15 100.2 12.0 85 1-90 193-282 (382)
82 PRK12838 carbamoyl phosphate s 99.2 3.8E-10 8.3E-15 98.5 11.7 83 2-90 169-256 (354)
83 cd03146 GAT1_Peptidase_E Type 99.1 1.3E-10 2.8E-15 94.5 7.9 106 2-108 33-157 (212)
84 TIGR01368 CPSaseIIsmall carbam 99.1 2.4E-10 5.3E-15 99.8 10.0 83 2-90 175-262 (358)
85 PRK14607 bifunctional glutamin 99.1 7.9E-10 1.7E-14 101.2 13.2 136 3-163 2-151 (534)
86 PRK05282 (alpha)-aspartyl dipe 99.1 1.2E-09 2.6E-14 90.4 11.2 106 2-107 33-155 (233)
87 cd01747 GATase1_Glutamyl_Hydro 99.1 2.2E-10 4.8E-15 96.8 6.9 77 14-90 24-111 (273)
88 COG2071 Predicted glutamine am 99.1 3.2E-10 7E-15 93.4 7.4 145 15-164 31-198 (243)
89 KOG1622 GMP synthase [Nucleoti 99.1 2.8E-10 6E-15 100.5 6.6 139 2-163 18-166 (552)
90 PRK05380 pyrG CTP synthetase; 99.1 4.8E-10 1E-14 101.8 8.1 84 2-90 290-391 (533)
91 PLN03206 phosphoribosylformylg 99.0 1.2E-09 2.5E-14 108.1 10.9 117 1-118 1038-1177(1307)
92 PF09825 BPL_N: Biotin-protein 99.0 6.6E-09 1.4E-13 91.0 13.4 159 1-163 1-185 (367)
93 PRK05368 homoserine O-succinyl 99.0 3.5E-09 7.7E-14 90.5 10.9 145 1-164 36-218 (302)
94 COG0505 CarA Carbamoylphosphat 99.0 1.6E-09 3.5E-14 93.5 8.7 85 2-91 181-270 (368)
95 TIGR00337 PyrG CTP synthase. C 99.0 1.7E-09 3.8E-14 98.2 8.9 84 2-90 291-391 (525)
96 TIGR01735 FGAM_synt phosphorib 99.0 2.4E-09 5.3E-14 106.2 10.7 107 1-118 1056-1185(1310)
97 cd01746 GATase1_CTP_Synthase T 99.0 2.7E-09 5.9E-14 88.3 8.7 84 2-90 2-103 (235)
98 PRK05297 phosphoribosylformylg 99.0 3.6E-09 7.8E-14 105.1 11.0 111 1-118 1036-1165(1290)
99 PRK11780 isoprenoid biosynthes 98.9 9.7E-09 2.1E-13 84.1 10.6 87 2-88 3-145 (217)
100 TIGR01823 PabB-fungal aminodeo 98.9 3.3E-08 7.1E-13 93.7 14.1 84 1-89 6-104 (742)
101 PLN02327 CTP synthase 98.9 7.2E-09 1.6E-13 94.5 9.2 83 2-89 299-409 (557)
102 PLN02889 oxo-acid-lyase/anthra 98.9 4E-08 8.8E-13 94.4 14.5 140 1-162 82-243 (918)
103 COG0504 PyrG CTP synthase (UTP 98.8 1E-08 2.2E-13 91.7 8.5 82 2-88 290-389 (533)
104 TIGR01382 PfpI intracellular p 98.8 1.9E-08 4.2E-13 77.9 9.0 84 2-87 1-108 (166)
105 cd03132 GATase1_catalase Type 98.8 3.6E-08 7.7E-13 74.7 10.0 87 1-88 2-112 (142)
106 PHA03366 FGAM-synthase; Provis 98.8 2.6E-08 5.6E-13 99.1 10.8 118 1-118 1029-1169(1304)
107 cd01653 GATase1 Type 1 glutami 98.8 3.6E-08 7.8E-13 68.3 8.2 81 3-84 1-92 (115)
108 COG0693 ThiJ Putative intracel 98.8 5.4E-08 1.2E-12 77.1 9.2 86 1-88 3-116 (188)
109 cd03134 GATase1_PfpI_like A ty 98.8 4.6E-08 1E-12 75.7 8.5 85 2-88 1-111 (165)
110 cd03169 GATase1_PfpI_1 Type 1 98.7 6.2E-08 1.3E-12 76.4 9.2 84 2-87 1-124 (180)
111 TIGR01739 tegu_FGAM_synt herpe 98.6 1.7E-07 3.8E-12 92.8 10.8 117 2-118 931-1070(1202)
112 cd03135 GATase1_DJ-1 Type 1 gl 98.6 2.5E-07 5.4E-12 71.0 9.2 84 3-87 1-109 (163)
113 cd03128 GAT_1 Type 1 glutamine 98.6 1.1E-07 2.4E-12 63.0 6.3 80 4-84 2-92 (92)
114 KOG2387 CTP synthase (UTP-ammo 98.6 7.2E-08 1.6E-12 85.4 6.4 81 2-87 300-408 (585)
115 cd03144 GATase1_ScBLP_like Typ 98.6 2.3E-07 5E-12 68.8 7.9 47 36-84 43-90 (114)
116 cd03129 GAT1_Peptidase_E_like 98.6 7.3E-07 1.6E-11 72.2 11.1 107 2-108 31-158 (210)
117 cd03133 GATase1_ES1 Type 1 glu 98.6 4.5E-07 9.9E-12 74.1 9.2 76 13-88 20-142 (213)
118 cd03137 GATase1_AraC_1 AraC tr 98.5 2.8E-07 6.1E-12 72.6 7.5 84 3-88 1-113 (187)
119 PRK11574 oxidative-stress-resi 98.5 1E-06 2.2E-11 70.2 10.4 85 1-86 3-114 (196)
120 TIGR01383 not_thiJ DJ-1 family 98.5 6.9E-07 1.5E-11 69.8 9.2 86 2-88 1-113 (179)
121 KOG0370 Multifunctional pyrimi 98.5 5.2E-07 1.1E-11 86.0 9.7 80 8-91 179-260 (1435)
122 cd03139 GATase1_PfpI_2 Type 1 98.5 4.5E-07 9.9E-12 71.0 6.9 84 3-88 1-111 (183)
123 cd03138 GATase1_AraC_2 AraC tr 98.5 1.2E-06 2.6E-11 69.5 9.2 55 34-88 66-121 (195)
124 PRK04155 chaperone protein Hch 98.5 1.8E-06 3.8E-11 73.6 10.6 52 36-88 146-197 (287)
125 cd03147 GATase1_Ydr533c_like T 98.4 7.3E-07 1.6E-11 73.7 7.7 51 36-87 93-143 (231)
126 PRK11249 katE hydroperoxidase 98.4 2.7E-06 5.8E-11 80.5 10.1 88 1-89 598-709 (752)
127 cd03140 GATase1_PfpI_3 Type 1 98.3 1.5E-06 3.1E-11 68.0 7.0 83 3-88 1-108 (170)
128 cd03136 GATase1_AraC_ArgR_like 98.3 2.3E-06 4.9E-11 67.5 7.4 51 35-88 62-112 (185)
129 cd03148 GATase1_EcHsp31_like T 98.3 2.6E-06 5.7E-11 70.4 7.3 51 36-87 95-145 (232)
130 PF01965 DJ-1_PfpI: DJ-1/PfpI 98.1 1.3E-06 2.8E-11 66.7 2.5 52 36-88 36-88 (147)
131 PF03575 Peptidase_S51: Peptid 98.1 6.4E-06 1.4E-10 63.6 6.4 94 13-107 3-111 (154)
132 COG4285 Uncharacterized conser 98.1 2.8E-05 6.1E-10 63.5 10.0 155 1-165 1-182 (253)
133 cd03141 GATase1_Hsp31_like Typ 98.1 7.8E-06 1.7E-10 66.9 5.9 52 36-88 89-140 (221)
134 PF13278 DUF4066: Putative ami 98.0 1.6E-05 3.5E-10 61.6 6.9 54 33-88 57-110 (166)
135 KOG2764 Putative transcription 98.0 3.2E-05 6.9E-10 63.6 8.2 72 15-88 24-118 (247)
136 PRK09393 ftrA transcriptional 97.9 5.2E-05 1.1E-09 64.9 8.7 85 2-89 11-124 (322)
137 KOG1224 Para-aminobenzoate (PA 97.7 0.00016 3.5E-09 65.9 8.5 108 36-164 63-177 (767)
138 cd03145 GAT1_cyanophycinase Ty 97.7 0.00042 9.1E-09 56.6 9.8 87 2-88 31-134 (217)
139 cd03131 GATase1_HTS Type 1 glu 97.6 0.00025 5.4E-09 56.4 6.6 50 35-90 60-117 (175)
140 COG3340 PepE Peptidase E [Amin 97.5 0.00013 2.9E-09 59.5 4.9 76 15-90 54-137 (224)
141 KOG0026 Anthranilate synthase, 97.5 0.0028 6E-08 50.1 11.7 70 15-90 34-111 (223)
142 TIGR02069 cyanophycinase cyano 97.3 0.00098 2.1E-08 55.7 7.9 106 2-107 30-162 (250)
143 KOG1559 Gamma-glutamyl hydrola 97.3 0.00032 7E-09 58.4 4.7 85 3-89 55-165 (340)
144 KOG1907 Phosphoribosylformylgl 97.2 0.0017 3.7E-08 62.4 8.9 113 2-118 1060-1190(1320)
145 PF03698 UPF0180: Uncharacteri 96.5 0.0076 1.6E-07 41.9 5.5 42 2-46 3-44 (80)
146 TIGR01001 metA homoserine O-su 96.5 0.0056 1.2E-07 52.4 5.8 101 1-107 36-173 (300)
147 PF04204 HTS: Homoserine O-suc 96.3 0.016 3.4E-07 49.7 7.3 100 1-106 35-171 (298)
148 COG3155 ElbB Uncharacterized p 96.3 0.029 6.2E-07 44.3 8.1 55 36-90 84-147 (217)
149 PRK03094 hypothetical protein; 96.0 0.022 4.8E-07 39.6 5.4 42 2-46 3-44 (80)
150 COG4242 CphB Cyanophycinase an 95.8 0.0056 1.2E-07 51.2 2.1 80 35-114 104-199 (293)
151 COG4977 Transcriptional regula 95.6 0.02 4.4E-07 49.8 4.8 52 35-88 74-125 (328)
152 PRK01911 ppnK inorganic polyph 95.5 0.085 1.9E-06 45.1 8.5 71 1-81 1-98 (292)
153 PRK03708 ppnK inorganic polyph 95.2 0.12 2.6E-06 43.9 8.3 70 1-81 1-90 (277)
154 PRK02649 ppnK inorganic polyph 94.0 0.3 6.5E-06 42.1 7.9 70 2-81 3-102 (305)
155 PRK14077 pnk inorganic polypho 93.4 0.49 1.1E-05 40.4 8.2 71 1-81 11-98 (287)
156 PRK04539 ppnK inorganic polyph 93.0 0.85 1.9E-05 39.1 9.0 70 2-81 7-102 (296)
157 PRK03378 ppnK inorganic polyph 92.8 0.76 1.6E-05 39.3 8.6 70 2-81 7-97 (292)
158 cd03143 A4_beta-galactosidase_ 92.8 0.44 9.5E-06 36.2 6.5 59 13-78 29-87 (154)
159 PRK04885 ppnK inorganic polyph 92.8 0.45 9.9E-06 40.1 7.1 63 1-81 1-71 (265)
160 PRK03372 ppnK inorganic polyph 92.7 0.78 1.7E-05 39.6 8.5 70 2-81 7-106 (306)
161 PF08532 Glyco_hydro_42M: Beta 92.6 0.25 5.4E-06 39.8 5.1 58 13-77 33-90 (207)
162 PRK02155 ppnK NAD(+)/NADH kina 92.4 0.84 1.8E-05 39.0 8.3 70 2-81 7-97 (291)
163 PRK14076 pnk inorganic polypho 92.0 0.9 1.9E-05 42.3 8.5 71 1-81 291-382 (569)
164 PRK14075 pnk inorganic polypho 91.9 1 2.2E-05 37.8 8.1 68 1-81 1-72 (256)
165 PRK02645 ppnK inorganic polyph 91.5 1.6 3.4E-05 37.6 9.0 70 2-81 5-92 (305)
166 PLN02929 NADH kinase 90.3 1.2 2.6E-05 38.4 7.1 55 15-80 39-96 (301)
167 PRK01185 ppnK inorganic polyph 89.8 2.6 5.5E-05 35.8 8.6 65 1-80 1-82 (271)
168 COG4635 HemG Flavodoxin [Energ 89.5 3.1 6.8E-05 32.8 8.1 77 1-81 1-89 (175)
169 PRK11104 hemG protoporphyrinog 88.8 2.8 6E-05 33.0 7.7 75 1-81 1-88 (177)
170 PF06283 ThuA: Trehalose utili 87.6 0.77 1.7E-05 37.0 3.9 60 17-81 26-91 (217)
171 PRK01231 ppnK inorganic polyph 86.8 4.6 0.0001 34.6 8.4 70 2-81 6-96 (295)
172 PRK00561 ppnK inorganic polyph 86.6 3.1 6.7E-05 35.1 7.1 62 1-81 1-67 (259)
173 PRK09271 flavodoxin; Provision 84.3 11 0.00024 28.9 8.7 45 1-45 1-59 (160)
174 COG0771 MurD UDP-N-acetylmuram 84.1 6.4 0.00014 35.8 8.3 30 1-30 8-37 (448)
175 COG4090 Uncharacterized protei 84.0 0.62 1.3E-05 35.5 1.5 45 31-79 79-124 (154)
176 PRK02231 ppnK inorganic polyph 81.7 5.2 0.00011 33.9 6.4 58 13-80 3-75 (272)
177 PRK06242 flavodoxin; Provision 80.8 5.4 0.00012 29.8 5.7 45 1-45 1-51 (150)
178 COG1897 MetA Homoserine trans- 80.1 4.1 8.8E-05 34.6 5.1 81 2-88 37-152 (307)
179 PLN02935 Bifunctional NADH kin 78.5 11 0.00023 34.9 7.7 69 2-80 196-295 (508)
180 PF01220 DHquinase_II: Dehydro 77.8 9.1 0.0002 29.4 6.0 38 12-49 27-79 (140)
181 COG1058 CinA Predicted nucleot 76.8 13 0.00028 31.3 7.3 48 1-48 2-71 (255)
182 PF09822 ABC_transp_aux: ABC-t 76.5 15 0.00033 30.4 7.7 67 2-75 148-229 (271)
183 TIGR00200 cinA_nterm competenc 76.4 8.7 0.00019 34.5 6.5 47 1-47 1-69 (413)
184 PRK00421 murC UDP-N-acetylmura 76.0 19 0.0004 32.3 8.6 78 1-79 8-114 (461)
185 PRK04761 ppnK inorganic polyph 74.7 4.2 9.2E-05 34.0 3.8 38 34-81 22-59 (246)
186 PLN02727 NAD kinase 73.8 12 0.00026 37.1 7.0 70 2-81 680-777 (986)
187 TIGR02990 ectoine_eutA ectoine 73.4 19 0.00041 29.9 7.4 67 2-77 122-212 (239)
188 COG2910 Putative NADH-flavin r 72.9 32 0.00069 28.0 8.2 28 1-28 1-29 (211)
189 PF01513 NAD_kinase: ATP-NAD k 72.6 6.6 0.00014 33.1 4.6 36 36-81 75-110 (285)
190 PRK06444 prephenate dehydrogen 72.2 10 0.00023 30.5 5.4 38 1-45 1-39 (197)
191 cd06318 PBP1_ABC_sugar_binding 72.1 15 0.00031 29.7 6.4 45 2-46 1-64 (282)
192 cd06305 PBP1_methylthioribose_ 71.5 40 0.00088 26.9 8.9 46 2-47 1-65 (273)
193 PF00056 Ldh_1_N: lactate/mala 70.9 17 0.00036 27.4 6.1 47 1-47 1-79 (141)
194 PRK03501 ppnK inorganic polyph 70.8 14 0.0003 31.2 6.0 64 2-80 4-74 (264)
195 cd05014 SIS_Kpsf KpsF-like pro 70.6 36 0.00078 24.3 8.3 70 2-80 2-83 (128)
196 PF02601 Exonuc_VII_L: Exonucl 69.9 25 0.00055 29.9 7.7 77 1-82 15-117 (319)
197 TIGR00177 molyb_syn molybdenum 69.6 11 0.00023 28.5 4.7 36 14-49 31-78 (144)
198 PRK10446 ribosomal protein S6 69.0 11 0.00023 31.9 5.1 30 1-30 1-33 (300)
199 TIGR01755 flav_wrbA NAD(P)H:qu 68.6 16 0.00035 29.0 5.8 45 1-45 1-76 (197)
200 PRK03670 competence damage-ind 68.5 17 0.00036 30.5 6.1 47 1-47 1-70 (252)
201 PRK06703 flavodoxin; Provision 68.5 16 0.00035 27.4 5.5 43 1-43 2-54 (151)
202 COG0061 nadF NAD kinase [Coenz 68.4 29 0.00062 29.4 7.6 70 1-80 1-88 (281)
203 PRK05395 3-dehydroquinate dehy 68.4 53 0.0012 25.4 8.4 38 11-48 27-79 (146)
204 PF12641 Flavodoxin_3: Flavodo 68.3 14 0.00031 28.7 5.3 69 7-81 6-79 (160)
205 KOG4180 Predicted kinase [Gene 68.3 9.8 0.00021 33.4 4.6 54 15-78 80-136 (395)
206 PRK13015 3-dehydroquinate dehy 68.1 45 0.00097 25.8 7.8 38 11-48 27-79 (146)
207 PRK03673 hypothetical protein; 67.7 16 0.00034 32.7 6.1 47 1-47 2-70 (396)
208 TIGR00147 lipid kinase, YegS/R 67.6 48 0.001 27.6 8.8 49 2-50 3-70 (293)
209 PRK00549 competence damage-ind 67.4 12 0.00027 33.5 5.4 47 1-47 1-69 (414)
210 TIGR02667 moaB_proteo molybden 67.0 33 0.00071 26.6 7.1 48 1-48 5-74 (163)
211 PRK06756 flavodoxin; Provision 66.6 22 0.00047 26.5 5.9 44 1-44 2-56 (148)
212 cd00885 cinA Competence-damage 66.5 24 0.00051 27.6 6.2 70 12-88 21-102 (170)
213 PF13689 DUF4154: Domain of un 65.8 41 0.0009 25.2 7.3 69 2-82 29-102 (145)
214 PRK03767 NAD(P)H:quinone oxido 65.6 20 0.00043 28.5 5.8 30 1-30 2-38 (200)
215 PF10087 DUF2325: Uncharacteri 65.6 43 0.00094 23.3 7.2 69 11-88 11-93 (97)
216 PF03358 FMN_red: NADPH-depend 65.2 16 0.00035 27.1 5.0 74 1-80 1-115 (152)
217 cd06320 PBP1_allose_binding Pe 65.0 63 0.0014 25.9 8.8 67 2-77 1-88 (275)
218 PRK12359 flavodoxin FldB; Prov 64.3 27 0.00059 27.5 6.2 44 1-44 1-52 (172)
219 PRK06455 riboflavin synthase; 63.0 55 0.0012 25.5 7.5 76 1-77 2-97 (155)
220 COG1941 FrhG Coenzyme F420-red 62.3 37 0.0008 28.4 6.8 77 2-86 5-97 (247)
221 TIGR01754 flav_RNR ribonucleot 62.3 53 0.0011 24.3 7.3 45 1-45 1-58 (140)
222 cd06300 PBP1_ABC_sugar_binding 62.1 64 0.0014 25.8 8.3 67 2-77 1-91 (272)
223 PF00885 DMRL_synthase: 6,7-di 61.6 57 0.0012 24.9 7.4 72 1-74 4-102 (144)
224 COG0303 MoeA Molybdopterin bio 61.1 35 0.00076 30.7 7.0 35 15-49 208-254 (404)
225 PRK14571 D-alanyl-alanine synt 61.0 45 0.00098 27.9 7.4 42 1-43 1-59 (299)
226 PRK01215 competence damage-ind 60.8 43 0.00093 28.2 7.2 49 1-49 4-74 (264)
227 TIGR02336 1,3-beta-galactosyl- 60.8 28 0.0006 33.4 6.5 78 2-79 440-544 (719)
228 cd06309 PBP1_YtfQ_like Peripla 59.9 53 0.0011 26.3 7.5 33 15-47 21-65 (273)
229 cd06310 PBP1_ABC_sugar_binding 59.5 53 0.0012 26.2 7.4 45 2-46 1-66 (273)
230 PF01408 GFO_IDH_MocA: Oxidore 58.5 28 0.00061 24.5 5.0 65 1-76 1-91 (120)
231 PRK01710 murD UDP-N-acetylmura 57.9 41 0.00089 30.2 7.0 29 2-30 16-44 (458)
232 cd00758 MoCF_BD MoCF_BD: molyb 57.5 31 0.00068 25.5 5.3 36 14-49 23-70 (133)
233 PRK04690 murD UDP-N-acetylmura 57.3 69 0.0015 28.9 8.4 29 2-30 10-38 (468)
234 TIGR00237 xseA exodeoxyribonuc 56.2 69 0.0015 28.9 8.1 76 1-81 130-228 (432)
235 cd03142 GATase1_ThuA Type 1 gl 55.8 25 0.00055 28.7 4.8 62 15-81 28-98 (215)
236 PRK10949 protease 4; Provision 54.8 32 0.0007 32.6 6.0 37 36-78 363-403 (618)
237 PRK07116 flavodoxin; Provision 54.4 37 0.00081 25.8 5.4 27 1-27 3-32 (160)
238 PRK10481 hypothetical protein; 54.4 57 0.0012 26.9 6.7 66 2-78 131-213 (224)
239 cd00886 MogA_MoaB MogA_MoaB fa 54.2 45 0.00097 25.3 5.8 48 2-49 2-73 (152)
240 PRK10355 xylF D-xylose transpo 53.9 1.3E+02 0.0027 25.6 9.1 67 2-77 27-112 (330)
241 PF09897 DUF2124: Uncharacteri 53.3 2.8 6E-05 32.4 -1.1 42 34-79 78-119 (147)
242 cd06319 PBP1_ABC_sugar_binding 53.3 1.1E+02 0.0025 24.2 9.0 32 16-47 22-65 (277)
243 cd06308 PBP1_sensor_kinase_lik 52.9 1.2E+02 0.0025 24.2 8.4 52 17-77 23-87 (270)
244 PRK13302 putative L-aspartate 52.1 1.2E+02 0.0025 25.5 8.4 69 1-80 7-100 (271)
245 PRK11914 diacylglycerol kinase 51.8 74 0.0016 26.8 7.3 50 1-50 9-77 (306)
246 PRK01390 murD UDP-N-acetylmura 51.5 71 0.0015 28.5 7.4 29 2-30 11-39 (460)
247 TIGR01082 murC UDP-N-acetylmur 51.1 57 0.0012 29.1 6.7 76 3-79 2-106 (448)
248 PRK03369 murD UDP-N-acetylmura 51.1 65 0.0014 29.3 7.2 28 2-29 14-41 (488)
249 COG0616 SppA Periplasmic serin 50.8 57 0.0012 28.1 6.5 38 37-81 97-138 (317)
250 PRK05569 flavodoxin; Provision 50.7 93 0.002 22.7 6.9 44 2-45 3-56 (141)
251 cd06267 PBP1_LacI_sugar_bindin 50.6 1.2E+02 0.0025 23.6 8.3 51 16-77 22-84 (264)
252 cd06316 PBP1_ABC_sugar_binding 50.5 1.4E+02 0.003 24.3 9.1 66 2-76 1-86 (294)
253 PRK06975 bifunctional uroporph 50.3 57 0.0012 31.1 6.9 47 1-47 4-65 (656)
254 TIGR03521 GldG gliding-associa 50.2 76 0.0017 29.5 7.6 68 2-76 185-267 (552)
255 PRK09267 flavodoxin FldA; Vali 50.0 53 0.0011 25.0 5.6 45 1-45 2-54 (169)
256 COG1570 XseA Exonuclease VII, 50.0 86 0.0019 28.6 7.6 70 2-75 137-229 (440)
257 PRK00048 dihydrodipicolinate r 50.0 1.5E+02 0.0032 24.5 8.7 29 1-29 2-32 (257)
258 PRK04308 murD UDP-N-acetylmura 49.3 92 0.002 27.6 7.8 29 2-30 7-35 (445)
259 COG0391 Uncharacterized conser 49.0 17 0.00037 31.7 2.9 41 35-79 187-229 (323)
260 PF13407 Peripla_BP_4: Peripla 48.9 1.3E+02 0.0028 23.8 8.0 56 16-80 21-89 (257)
261 COG0745 OmpR Response regulato 48.7 68 0.0015 26.2 6.4 71 1-80 1-81 (229)
262 PRK00141 murD UDP-N-acetylmura 48.4 72 0.0016 28.8 7.0 29 2-30 17-45 (473)
263 PF09508 Lact_bio_phlase: Lact 48.2 40 0.00086 32.3 5.3 75 2-78 437-540 (716)
264 PRK03815 murD UDP-N-acetylmura 47.8 1.3E+02 0.0027 26.8 8.3 29 1-30 1-29 (401)
265 TIGR01088 aroQ 3-dehydroquinat 46.0 1E+02 0.0022 23.7 6.4 38 11-48 25-77 (141)
266 PLN02404 6,7-dimethyl-8-ribity 45.6 1.4E+02 0.0029 22.9 8.0 72 1-74 8-106 (141)
267 TIGR03294 FrhG coenzyme F420 h 44.9 51 0.0011 27.0 5.1 77 1-84 2-96 (228)
268 cd01539 PBP1_GGBP Periplasmic 44.9 1.8E+02 0.0038 24.0 8.7 67 2-77 1-88 (303)
269 PRK13304 L-aspartate dehydroge 44.8 1.6E+02 0.0036 24.4 8.2 27 1-28 2-31 (265)
270 TIGR00114 lumazine-synth 6,7-d 44.7 1.4E+02 0.003 22.7 8.2 73 1-75 1-100 (138)
271 smart00870 Asparaginase Aspara 44.5 78 0.0017 27.3 6.4 35 37-77 235-270 (323)
272 PRK00286 xseA exodeoxyribonucl 44.3 1.3E+02 0.0029 26.8 8.0 76 1-81 136-233 (438)
273 PRK01368 murD UDP-N-acetylmura 44.3 1.1E+02 0.0023 27.7 7.4 28 2-30 8-35 (454)
274 cd01538 PBP1_ABC_xylose_bindin 44.2 1.5E+02 0.0032 24.2 7.8 67 2-77 1-86 (288)
275 TIGR01819 F420_cofD LPPG:FO 2- 43.9 22 0.00047 30.7 2.7 39 35-79 180-220 (297)
276 PF09370 TIM-br_sig_trns: TIM- 43.8 29 0.00063 29.5 3.4 31 60-90 3-33 (268)
277 COG2984 ABC-type uncharacteriz 43.6 1.6E+02 0.0036 25.7 8.1 73 1-80 160-248 (322)
278 PRK09417 mogA molybdenum cofac 43.5 1.2E+02 0.0025 24.4 6.8 48 1-48 4-77 (193)
279 PRK02261 methylaspartate mutas 43.4 1E+02 0.0022 23.1 6.2 45 2-46 5-63 (137)
280 PRK14690 molybdopterin biosynt 43.2 60 0.0013 29.2 5.6 34 15-48 225-270 (419)
281 PRK10333 5-formyltetrahydrofol 43.0 11 0.00023 29.8 0.7 50 36-85 108-159 (182)
282 PRK00683 murD UDP-N-acetylmura 43.0 1.5E+02 0.0032 26.2 8.0 29 2-30 5-33 (418)
283 PRK13303 L-aspartate dehydroge 42.2 2E+02 0.0043 23.9 8.3 26 1-27 2-29 (265)
284 cd02067 B12-binding B12 bindin 42.1 86 0.0019 22.3 5.4 62 3-67 2-77 (119)
285 PF12724 Flavodoxin_5: Flavodo 41.9 53 0.0012 24.4 4.4 38 9-46 8-52 (143)
286 TIGR00706 SppA_dom signal pept 41.6 76 0.0016 25.3 5.5 61 2-79 1-69 (207)
287 TIGR02853 spore_dpaA dipicolin 41.1 66 0.0014 27.2 5.3 42 1-44 2-61 (287)
288 PRK12419 riboflavin synthase s 40.6 1.8E+02 0.0038 22.8 8.1 73 1-75 11-110 (158)
289 COG0136 Asd Aspartate-semialde 40.5 1.3E+02 0.0028 26.5 7.0 24 1-24 2-26 (334)
290 PF10727 Rossmann-like: Rossma 40.5 34 0.00075 25.5 3.1 43 1-44 11-75 (127)
291 PRK05665 amidotransferase; Pro 40.4 23 0.00049 29.3 2.3 38 145-182 133-170 (240)
292 TIGR02727 MTHFS_bact 5,10-meth 40.1 15 0.00032 28.8 1.1 51 36-86 114-165 (181)
293 cd00466 DHQase_II Dehydroquina 39.9 1.3E+02 0.0028 23.1 6.2 38 11-48 25-77 (140)
294 TIGR00640 acid_CoA_mut_C methy 39.9 1.2E+02 0.0027 22.5 6.1 62 2-66 4-79 (132)
295 cd07062 Peptidase_S66_mccF_lik 39.7 1.7E+02 0.0037 24.9 7.7 30 1-30 1-38 (308)
296 COG5426 Uncharacterized membra 39.5 57 0.0012 26.8 4.3 62 14-75 36-114 (254)
297 PRK00726 murG undecaprenyldiph 39.1 94 0.002 26.2 6.0 56 9-79 221-280 (357)
298 cd06323 PBP1_ribose_binding Pe 38.4 1.7E+02 0.0036 23.0 7.1 30 16-45 22-63 (268)
299 TIGR00705 SppA_67K signal pept 38.3 90 0.0019 29.3 6.1 37 37-79 346-386 (584)
300 COG1184 GCD2 Translation initi 38.1 41 0.0009 29.1 3.6 71 12-83 159-233 (301)
301 PRK06027 purU formyltetrahydro 38.0 2E+02 0.0042 24.5 7.7 83 1-90 90-184 (286)
302 cd06317 PBP1_ABC_sugar_binding 37.8 1.8E+02 0.0039 23.0 7.3 52 17-77 24-87 (275)
303 PRK05928 hemD uroporphyrinogen 37.8 69 0.0015 25.4 4.8 48 1-48 2-63 (249)
304 cd06312 PBP1_ABC_sugar_binding 37.7 2.1E+02 0.0045 22.8 7.7 54 16-78 23-89 (271)
305 cd06299 PBP1_LacI_like_13 Liga 37.6 1.7E+02 0.0037 23.0 7.1 32 15-46 21-64 (265)
306 PF14403 CP_ATPgrasp_2: Circul 37.5 1.6E+02 0.0034 26.9 7.4 83 2-86 187-282 (445)
307 PRK00166 apaH diadenosine tetr 37.5 69 0.0015 27.1 4.9 24 1-24 1-25 (275)
308 PRK15408 autoinducer 2-binding 37.0 2.6E+02 0.0056 23.9 8.5 67 2-77 25-111 (336)
309 cd06314 PBP1_tmGBP Periplasmic 37.0 2.1E+02 0.0046 22.7 8.0 30 17-46 22-64 (271)
310 TIGR01087 murD UDP-N-acetylmur 36.7 1.8E+02 0.0039 25.6 7.7 28 2-29 1-28 (433)
311 PRK14619 NAD(P)H-dependent gly 36.6 84 0.0018 26.5 5.3 44 1-45 5-55 (308)
312 cd06302 PBP1_LsrB_Quorum_Sensi 36.6 2.4E+02 0.0052 23.1 9.1 46 2-47 1-66 (298)
313 TIGR02634 xylF D-xylose ABC tr 36.2 2.3E+02 0.0049 23.4 7.8 32 15-46 20-63 (302)
314 cd06315 PBP1_ABC_sugar_binding 35.8 2.3E+02 0.0051 22.8 9.1 47 1-47 1-66 (280)
315 cd02071 MM_CoA_mut_B12_BD meth 35.7 1.7E+02 0.0037 21.1 7.6 62 2-66 1-76 (122)
316 PRK10342 glycerate kinase I; P 35.6 26 0.00056 31.3 2.0 43 33-81 280-326 (381)
317 cd07186 CofD_like LPPG:FO 2-ph 35.5 41 0.0009 29.1 3.2 40 35-79 181-223 (303)
318 PF01113 DapB_N: Dihydrodipico 35.5 1.4E+02 0.003 21.7 5.7 29 1-29 1-31 (124)
319 PRK09701 D-allose transporter 35.4 2.6E+02 0.0056 23.2 9.2 67 2-77 26-113 (311)
320 PRK10653 D-ribose transporter 35.3 2.5E+02 0.0053 22.9 8.0 33 15-47 48-92 (295)
321 PRK13054 lipid kinase; Reviewe 34.9 2.7E+02 0.0059 23.3 8.1 49 2-50 5-69 (300)
322 cd06273 PBP1_GntR_like_1 This 34.7 2.1E+02 0.0045 22.6 7.1 32 15-46 21-64 (268)
323 cd06324 PBP1_ABC_sugar_binding 34.6 1.8E+02 0.004 23.9 7.0 31 16-46 23-67 (305)
324 PF09198 T4-Gluco-transf: Bact 34.3 97 0.0021 18.0 3.9 26 1-26 1-37 (38)
325 cd06282 PBP1_GntR_like_2 Ligan 33.7 2.3E+02 0.005 22.2 7.2 31 16-46 22-64 (266)
326 cd01537 PBP1_Repressors_Sugar_ 33.5 2.2E+02 0.0048 21.9 8.0 46 2-47 1-65 (264)
327 PRK14573 bifunctional D-alanyl 33.2 2.4E+02 0.0052 27.4 8.4 78 2-80 6-112 (809)
328 COG4126 Hydantoin racemase [Am 33.2 86 0.0019 26.0 4.5 41 37-89 69-109 (230)
329 COG2185 Sbm Methylmalonyl-CoA 32.9 1.3E+02 0.0028 23.2 5.2 66 15-85 32-106 (143)
330 cd06313 PBP1_ABC_sugar_binding 32.6 2.6E+02 0.0057 22.4 7.9 30 16-45 22-63 (272)
331 cd06321 PBP1_ABC_sugar_binding 32.4 2.4E+02 0.0053 22.3 7.2 53 16-77 22-88 (271)
332 cd00887 MoeA MoeA family. Memb 32.1 1.4E+02 0.0031 26.4 6.2 35 15-49 200-246 (394)
333 PRK09189 uroporphyrinogen-III 32.0 1.5E+02 0.0033 23.8 5.9 45 1-45 1-56 (240)
334 PRK02006 murD UDP-N-acetylmura 31.9 2.5E+02 0.0053 25.4 7.8 29 2-30 9-37 (498)
335 cd01575 PBP1_GntR Ligand-bindi 31.9 2.5E+02 0.0054 22.0 7.6 31 17-47 23-65 (268)
336 PF14359 DUF4406: Domain of un 31.8 90 0.002 21.9 4.0 37 11-47 17-69 (92)
337 TIGR00045 glycerate kinase. Th 31.8 33 0.00072 30.5 2.1 43 33-81 279-325 (375)
338 PRK05568 flavodoxin; Provision 31.7 1.4E+02 0.003 21.7 5.3 44 2-45 3-56 (142)
339 smart00852 MoCF_biosynth Proba 31.6 69 0.0015 23.5 3.5 35 14-48 22-68 (135)
340 PRK06728 aspartate-semialdehyd 31.5 2.6E+02 0.0056 24.6 7.6 25 1-25 6-32 (347)
341 COG1597 LCB5 Sphingosine kinas 31.4 2E+02 0.0043 24.5 6.7 37 13-49 23-70 (301)
342 COG3199 Predicted inorganic po 31.2 50 0.0011 29.2 3.0 38 37-85 100-137 (355)
343 KOG1467 Translation initiation 31.1 1E+02 0.0023 28.6 5.1 79 1-83 386-473 (556)
344 cd03109 DTBS Dethiobiotin synt 31.0 1.5E+02 0.0033 21.7 5.4 52 15-75 19-72 (134)
345 cd06289 PBP1_MalI_like Ligand- 31.0 2.6E+02 0.0056 21.9 7.1 30 17-46 23-64 (268)
346 PRK13337 putative lipid kinase 31.0 3.2E+02 0.0069 22.9 8.0 49 2-50 3-70 (304)
347 cd01536 PBP1_ABC_sugar_binding 30.8 2.6E+02 0.0056 21.7 8.3 45 2-46 1-64 (267)
348 PRK09932 glycerate kinase II; 30.6 39 0.00085 30.2 2.3 43 33-81 280-326 (381)
349 PRK10680 molybdopterin biosynt 30.6 1.1E+02 0.0023 27.5 5.2 34 15-48 209-254 (411)
350 PRK09453 phosphodiesterase; Pr 30.5 1E+02 0.0022 23.7 4.5 20 1-20 1-21 (182)
351 cd06301 PBP1_rhizopine_binding 30.4 2.7E+02 0.0059 21.9 7.7 45 2-46 1-65 (272)
352 PRK01372 ddl D-alanine--D-alan 30.3 1.2E+02 0.0025 25.2 5.1 32 13-44 26-63 (304)
353 PRK10569 NAD(P)H-dependent FMN 30.2 1.6E+02 0.0034 23.3 5.6 74 1-80 1-108 (191)
354 PRK13606 LPPG:FO 2-phospho-L-l 30.0 51 0.0011 28.5 2.8 39 35-78 183-222 (303)
355 PRK13057 putative lipid kinase 30.0 1.8E+02 0.0039 24.2 6.2 39 12-50 15-63 (287)
356 TIGR00768 rimK_fam alpha-L-glu 29.8 1.1E+02 0.0023 24.8 4.7 43 2-44 1-55 (277)
357 PRK13055 putative lipid kinase 29.7 3.2E+02 0.007 23.4 7.9 49 2-50 4-72 (334)
358 cd07388 MPP_Tt1561 Thermus the 29.6 3.1E+02 0.0068 22.4 7.5 34 1-45 5-39 (224)
359 TIGR01501 MthylAspMutase methy 29.5 2.1E+02 0.0045 21.6 5.8 75 2-81 3-91 (134)
360 PRK06851 hypothetical protein; 29.4 97 0.0021 27.5 4.6 33 13-45 48-80 (367)
361 PRK06851 hypothetical protein; 29.3 1.1E+02 0.0024 27.1 4.9 31 15-45 234-264 (367)
362 PF04392 ABC_sub_bind: ABC tra 29.3 1.2E+02 0.0026 25.2 5.1 72 2-80 133-220 (294)
363 TIGR01753 flav_short flavodoxi 28.6 1E+02 0.0022 22.1 4.0 39 7-45 7-53 (140)
364 PF01812 5-FTHF_cyc-lig: 5-for 28.6 13 0.00028 29.1 -1.0 49 37-85 117-169 (186)
365 PF04024 PspC: PspC domain; I 28.5 36 0.00079 22.1 1.3 17 70-89 9-25 (61)
366 PF07090 DUF1355: Protein of u 28.4 2.1E+02 0.0045 22.6 5.9 68 12-82 29-111 (177)
367 cd06292 PBP1_LacI_like_10 Liga 28.3 2.7E+02 0.006 22.0 6.9 57 15-77 21-89 (273)
368 TIGR03127 RuMP_HxlB 6-phospho 28.3 2.7E+02 0.0058 21.2 9.0 69 2-79 32-107 (179)
369 COG0673 MviM Predicted dehydro 28.2 3.2E+02 0.007 22.7 7.5 29 1-29 4-35 (342)
370 TIGR01752 flav_long flavodoxin 28.1 1.5E+02 0.0033 22.6 5.1 44 2-45 1-52 (167)
371 PRK11579 putative oxidoreducta 28.0 3.8E+02 0.0082 22.8 8.7 28 1-29 5-35 (346)
372 cd02072 Glm_B12_BD B12 binding 28.0 2.1E+02 0.0045 21.5 5.5 57 7-66 6-76 (128)
373 cd01545 PBP1_SalR Ligand-bindi 28.0 3E+02 0.0065 21.6 7.1 31 16-46 22-65 (270)
374 PRK07308 flavodoxin; Validated 28.0 2.2E+02 0.0048 21.0 5.8 42 2-43 3-54 (146)
375 PF03437 BtpA: BtpA family; I 27.4 1.2E+02 0.0026 25.5 4.6 62 9-80 124-208 (254)
376 PRK00066 ldh L-lactate dehydro 27.3 2.6E+02 0.0057 23.9 6.8 14 34-47 70-83 (315)
377 PRK03806 murD UDP-N-acetylmura 26.8 3.2E+02 0.0069 24.1 7.5 29 2-30 8-36 (438)
378 PRK11303 DNA-binding transcrip 26.5 2.8E+02 0.0061 22.8 6.8 45 2-46 63-126 (328)
379 cd06322 PBP1_ABC_sugar_binding 26.4 3.2E+02 0.007 21.5 7.9 31 16-46 22-64 (267)
380 PRK00061 ribH 6,7-dimethyl-8-r 26.2 3.1E+02 0.0067 21.2 8.1 73 1-75 13-112 (154)
381 cd01391 Periplasmic_Binding_Pr 26.2 2.9E+02 0.0063 20.9 8.6 32 17-48 24-69 (269)
382 cd01541 PBP1_AraR Ligand-bindi 26.1 3.1E+02 0.0068 21.7 6.8 57 15-77 21-89 (273)
383 PF12850 Metallophos_2: Calcin 25.8 1.1E+02 0.0024 22.1 3.8 33 1-46 1-34 (156)
384 KOG3212 Uncharacterized conser 25.7 2.8E+02 0.0062 22.5 6.2 39 12-50 71-110 (208)
385 COG1587 HemD Uroporphyrinogen- 25.7 2.6E+02 0.0056 22.8 6.3 80 1-87 2-95 (248)
386 PRK03803 murD UDP-N-acetylmura 25.4 2.9E+02 0.0063 24.5 7.0 28 3-30 9-36 (448)
387 TIGR00725 conserved hypothetic 25.2 1E+02 0.0023 23.7 3.6 30 37-77 91-121 (159)
388 PLN02383 aspartate semialdehyd 24.8 3E+02 0.0066 24.0 6.8 23 1-23 8-31 (344)
389 cd07423 MPP_PrpE Bacillus subt 24.8 84 0.0018 25.4 3.2 25 1-25 1-26 (234)
390 PRK14491 putative bifunctional 24.7 1.2E+02 0.0025 28.7 4.5 34 15-48 399-444 (597)
391 cd01540 PBP1_arabinose_binding 24.5 3.7E+02 0.008 21.5 7.3 53 16-77 22-85 (289)
392 TIGR01921 DAP-DH diaminopimela 24.4 4.4E+02 0.0095 23.0 7.7 45 1-46 4-69 (324)
393 cd05005 SIS_PHI Hexulose-6-pho 24.2 3.3E+02 0.0071 20.8 9.5 69 2-79 35-110 (179)
394 cd02070 corrinoid_protein_B12- 24.1 2.6E+02 0.0056 22.1 5.9 63 2-67 84-160 (201)
395 PRK03620 5-dehydro-4-deoxygluc 24.0 86 0.0019 26.6 3.2 43 36-79 40-85 (303)
396 PRK09004 FMN-binding protein M 23.9 1.7E+02 0.0036 22.0 4.5 42 2-43 3-52 (146)
397 cd02069 methionine_synthase_B1 23.9 3.2E+02 0.0069 22.0 6.4 62 2-66 90-165 (213)
398 TIGR03379 glycerol3P_GlpC glyc 23.6 3.9E+02 0.0083 23.3 7.4 67 14-86 182-250 (397)
399 cd06281 PBP1_LacI_like_5 Ligan 23.2 3.8E+02 0.0082 21.2 7.4 32 15-46 21-64 (269)
400 TIGR00288 conserved hypothetic 23.2 3.7E+02 0.008 21.0 7.6 57 13-79 69-137 (160)
401 PLN02417 dihydrodipicolinate s 23.1 1E+02 0.0022 25.9 3.4 44 36-80 34-79 (280)
402 PF09075 STb_secrete: Heat-sta 23.1 22 0.00049 21.4 -0.4 14 74-87 32-45 (48)
403 TIGR02370 pyl_corrinoid methyl 22.8 3.4E+02 0.0073 21.4 6.3 53 2-54 86-152 (197)
404 PRK07417 arogenate dehydrogena 22.8 2.3E+02 0.005 23.5 5.5 29 1-30 1-30 (279)
405 PRK05584 5'-methylthioadenosin 22.7 1.2E+02 0.0026 24.3 3.7 75 1-81 1-80 (230)
406 PRK06598 aspartate-semialdehyd 22.6 4.6E+02 0.01 23.3 7.6 25 1-25 2-28 (369)
407 PRK04663 murD UDP-N-acetylmura 22.6 3.4E+02 0.0074 24.1 6.9 13 35-47 66-78 (438)
408 PRK15029 arginine decarboxylas 22.5 4E+02 0.0086 26.1 7.7 72 1-78 1-92 (755)
409 TIGR02826 RNR_activ_nrdG3 anae 22.3 1.6E+02 0.0034 22.4 4.1 31 38-75 62-92 (147)
410 PRK11253 ldcA L,D-carboxypepti 22.0 4.7E+02 0.01 22.3 7.4 28 2-29 3-36 (305)
411 PF00532 Peripla_BP_1: Peripla 21.8 4.6E+02 0.0099 21.6 8.1 45 2-46 3-65 (279)
412 PRK08811 uroporphyrinogen-III 21.8 1.6E+02 0.0034 24.6 4.3 77 2-86 20-110 (266)
413 PRK05723 flavodoxin; Provision 21.6 2.4E+02 0.0052 21.4 5.0 43 1-43 1-53 (151)
414 cd03522 MoeA_like MoeA_like. T 21.5 3.1E+02 0.0067 23.7 6.2 50 1-50 160-232 (312)
415 COG2987 HutU Urocanate hydrata 21.3 3.3E+02 0.0072 25.2 6.4 73 7-80 239-326 (561)
416 PF03446 NAD_binding_2: NAD bi 21.0 1.5E+02 0.0033 22.4 3.8 29 1-30 2-31 (163)
417 PLN02522 ATP citrate (pro-S)-l 21.0 3.5E+02 0.0075 25.8 6.7 73 2-83 169-262 (608)
418 TIGR00465 ilvC ketol-acid redu 20.9 3.9E+02 0.0084 23.0 6.7 75 1-83 4-98 (314)
419 PRK05752 uroporphyrinogen-III 20.9 1.5E+02 0.0032 24.2 4.0 44 2-45 5-63 (255)
420 COG1983 PspC Putative stress-r 20.9 54 0.0012 22.2 1.0 17 70-89 10-26 (70)
421 cd05008 SIS_GlmS_GlmD_1 SIS (S 20.8 3.1E+02 0.0067 19.2 8.0 69 3-80 2-82 (126)
422 PRK14498 putative molybdopteri 20.7 2.3E+02 0.005 26.7 5.6 34 15-48 218-263 (633)
423 PRK04342 DNA topoisomerase VI 20.7 1.8E+02 0.0038 25.8 4.6 46 36-88 212-262 (367)
424 PLN02812 5-formyltetrahydrofol 20.3 53 0.0011 26.4 1.1 50 36-85 130-188 (211)
425 cd06279 PBP1_LacI_like_3 Ligan 20.2 4.6E+02 0.0099 21.0 8.3 32 15-46 26-65 (283)
426 TIGR00288 conserved hypothetic 20.2 2E+02 0.0043 22.5 4.3 29 3-31 109-137 (160)
427 PRK11439 pphA serine/threonine 20.2 2.4E+02 0.0052 22.5 5.0 23 2-24 18-41 (218)
428 PF04609 MCR_C: Methyl-coenzym 20.0 5.4E+02 0.012 21.9 7.0 42 2-45 131-177 (268)
No 1
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=100.00 E-value=7.8e-50 Score=313.58 Aligned_cols=164 Identities=48% Similarity=0.755 Sum_probs=151.5
Q ss_pred CEEEEEecCCCHHHHHHHHHHCC-CeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEch
Q 030035 1 MVVGVLALQGSFNEHIAALKRLG-VKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (184)
Q Consensus 1 m~IgVl~~qG~~~~~~~~L~~~G-~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~ 79 (184)
||||||++||++.||.+++++++ ++++.++.+++|+++|+||||||+||+|.+|.++.++.+.|++++++|+|+||+|+
T Consensus 1 m~IGVLalQG~v~EH~~~l~~~~~~e~~~Vk~~~dL~~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~Pv~GTCA 80 (194)
T COG0311 1 MKIGVLALQGAVEEHLEALEKAGGAEVVEVKRPEDLEGVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGLPVFGTCA 80 (194)
T ss_pred CeEEEEEecccHHHHHHHHHhhcCCceEEEcCHHHhccCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCCceEEech
Confidence 89999999999999999999995 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCCcEEEEe
Q 030035 80 GLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLAD 159 (184)
Q Consensus 80 G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~v~vLa~ 159 (184)
||++||+.+.+ +..++.||+||++|.||+||||++||++++++..++ .+.+|+|+|||||+|++++++|+|||+
T Consensus 81 GlIlLakei~~--~~~~~~Lg~mdi~V~RNAfGRQ~dSFe~~~di~~~~----~~~~~~avFIRAP~I~~vg~~V~vLa~ 154 (194)
T COG0311 81 GLILLAKEILD--GPEQPLLGLLDVTVRRNAFGRQVDSFETELDIEGFG----LPFPFPAVFIRAPVIEEVGDGVEVLAT 154 (194)
T ss_pred hhhhhhhhhcC--CCCCcccceEEEEEEccccccccccceeeEEeeccc----CCCcceEEEEEcceeehhcCcceEeee
Confidence 99999999875 257899999999999999999999999999888775 223589999999999999999999999
Q ss_pred cCCCCcccccC
Q 030035 160 YPVPSNKVLYS 170 (184)
Q Consensus 160 ~~~~~~~~~~~ 170 (184)
+++....+.++
T Consensus 155 l~~~iVav~qg 165 (194)
T COG0311 155 LDGRIVAVKQG 165 (194)
T ss_pred eCCEEEEEEeC
Confidence 99866555554
No 2
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=100.00 E-value=7.5e-47 Score=299.02 Aligned_cols=155 Identities=56% Similarity=0.922 Sum_probs=135.4
Q ss_pred EEecCCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcC-CcEEEEchHHHH
Q 030035 5 VLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG-KPVWGTCAGLIF 83 (184)
Q Consensus 5 Vl~~qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g-~PvlGIC~G~Ql 83 (184)
||++||+|.||+++|+++|.+.+.|+.+++|+++|+||||||+||+|.++.++.++.+.|++++++| +||||+|+||+|
T Consensus 1 VLALQG~~~EH~~~l~~lg~~~~~Vr~~~dL~~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIl 80 (188)
T PF01174_consen 1 VLALQGAFREHIRMLERLGAEVVEVRTPEDLEGLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLIL 80 (188)
T ss_dssp EESSSSSHHHHHHHHHHTTSEEEEE-SGGGGTT-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHH
T ss_pred CCccccChHHHHHHHHHcCCCeEEeCCHHHHccCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred HHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecC--CCcEEEEecC
Q 030035 84 LANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG--PDVDVLADYP 161 (184)
Q Consensus 84 La~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~--~~v~vLa~~~ 161 (184)
||+.+.++ .++.||+||++|.||+||||++||+++++++.++ .+|+++|||||+|.+++ ++|+|||+++
T Consensus 81 La~~v~~~---~q~~Lg~ldi~V~RNafGrQ~~SFe~~l~i~~~~------~~~~avFIRAP~I~~v~~~~~v~vla~~~ 151 (188)
T PF01174_consen 81 LAKEVEGQ---GQPLLGLLDITVRRNAFGRQLDSFEADLDIPGLG------EPFPAVFIRAPVIEEVGSPEGVEVLAELD 151 (188)
T ss_dssp HEEEECSS---CCTSS--EEEEEETTTTCSSSCEEEEEEEETTTE------SEEEEEESS--EEEEE--TTTEEEEEEET
T ss_pred hhhhhhhc---ccccccceeEEEEccccccchhcEEEEEEeecCC------CcEEEEEcCCcEEEEeecccccccccccc
Confidence 99999763 6888999999999999999999999999999875 48999999999999998 8899999999
Q ss_pred CCCcccc
Q 030035 162 VPSNKVL 168 (184)
Q Consensus 162 ~~~~~~~ 168 (184)
+....+.
T Consensus 152 g~iVav~ 158 (188)
T PF01174_consen 152 GKIVAVR 158 (188)
T ss_dssp TEEEEEE
T ss_pred cceEEEE
Confidence 7544443
No 3
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=100.00 E-value=1.1e-43 Score=294.30 Aligned_cols=165 Identities=81% Similarity=1.323 Sum_probs=151.7
Q ss_pred CEEEEEecCCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchH
Q 030035 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (184)
Q Consensus 1 m~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G 80 (184)
||||||++||++.++.++|+++|++++.+++++++.++|+||||||++++|.+|....++.+.|++++++|+|+||||+|
T Consensus 2 m~igVLa~qG~~~e~~~aL~~lG~ev~~v~~~~~L~~~DgLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~PvLGiC~G 81 (248)
T PLN02832 2 MAIGVLALQGSFNEHIAALRRLGVEAVEVRKPEQLEGVSGLIIPGGESTTMAKLAERHNLFPALREFVKSGKPVWGTCAG 81 (248)
T ss_pred cEEEEEeCCCchHHHHHHHHHCCCcEEEeCCHHHhccCCEEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCCEEEEChh
Confidence 79999999999999999999999999999999999999999999999999998887668999999999999999999999
Q ss_pred HHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCCcEEEEec
Q 030035 81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160 (184)
Q Consensus 81 ~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~v~vLa~~ 160 (184)
||||++.+.+.+.+.++.+|+||++|.||+||||++||++.+++||+|||+..|.+|+++|||||.|.+.+++|++|++|
T Consensus 82 mqlLa~~~~~~~~~~~~~lg~Ldi~v~RN~~g~qv~sfe~~l~ip~~gwn~~~~~~~~~vFirap~i~~~~~~v~~l~sy 161 (248)
T PLN02832 82 LIFLAERAVGQKEGGQELLGGLDCTVHRNFFGSQINSFETELPVPELAASEGGPETFRAVFIRAPAILSVGPGVEVLAEY 161 (248)
T ss_pred HHHHHHHhcccccCCcceeCCccceEEecccCceeEeEEcCCcCCccccccccccccceEEecCCceEeCCCcEEEEEEe
Confidence 99999998653223567899999999999999999999999999999999765668999999999999999999999999
Q ss_pred CCCCc
Q 030035 161 PVPSN 165 (184)
Q Consensus 161 ~~~~~ 165 (184)
+.++.
T Consensus 162 ~~~~~ 166 (248)
T PLN02832 162 PLPSE 166 (248)
T ss_pred ccccc
Confidence 86543
No 4
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=100.00 E-value=2.3e-42 Score=273.72 Aligned_cols=150 Identities=40% Similarity=0.682 Sum_probs=135.9
Q ss_pred CEEEEEecCCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchH
Q 030035 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (184)
Q Consensus 1 m~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G 80 (184)
||||||++||++.||.++|++.|+++++++++++++++|+||||||+++++.++.++.++.+.|+++.+ ++|++|||+|
T Consensus 3 ~~igVLalqG~~~Eh~~al~~lG~~v~~v~~~~~l~~~D~LILPGG~~t~~~~ll~~~~l~~~Ik~~~~-~kpilGICaG 81 (179)
T PRK13526 3 QKVGVLAIQGGYQKHADMFKSLGVEVKLVKFNNDFDSIDRLVIPGGESTTLLNLLNKHQIFDKLYNFCS-SKPVFGTCAG 81 (179)
T ss_pred cEEEEEECCccHHHHHHHHHHcCCcEEEECCHHHHhCCCEEEECCChHHHHHHHhhhcCcHHHHHHHHc-CCcEEEEcHH
Confidence 699999999999999999999999999999999999999999999988877666666689999999985 7899999999
Q ss_pred HHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCCcEEEEec
Q 030035 81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160 (184)
Q Consensus 81 ~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~v~vLa~~ 160 (184)
||+|++.. ++||++|++|.||+||||++||++++.++.. +|+++|||||+|++++++|+|||+|
T Consensus 82 ~qlL~~~s--------~~Lg~idg~V~Rn~~Grq~~sf~~~~~~~~~--------~~~~vFiRAP~i~~~~~~v~vla~~ 145 (179)
T PRK13526 82 SIILSKGE--------GYLNLLDLEVQRNAYGRQVDSFVADISFNDK--------NITGVFIRAPKFIVVGNQVDILSKY 145 (179)
T ss_pred HHHHHccC--------CCCCCccEEEEEcCCCCccceeeeecCcCCc--------eEEEEEEcCceEeEcCCCcEEEEEE
Confidence 99999862 5799999999999999999999999887743 6999999999999999999999999
Q ss_pred CCCCccc
Q 030035 161 PVPSNKV 167 (184)
Q Consensus 161 ~~~~~~~ 167 (184)
++....+
T Consensus 146 ~~~~v~v 152 (179)
T PRK13526 146 QNSPVLL 152 (179)
T ss_pred CCEEEEE
Confidence 8754433
No 5
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=100.00 E-value=3.8e-34 Score=228.46 Aligned_cols=156 Identities=49% Similarity=0.852 Sum_probs=139.3
Q ss_pred EEEEEecCCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHH
Q 030035 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (184)
Q Consensus 2 ~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~ 81 (184)
|||||++||++.|+.++|+++|+++++++++++++++|+||||||+++.+..+.+..++.+.|++++++|+|++|||+|+
T Consensus 1 ~igvl~~qg~~~e~~~~l~~~g~~~~~v~~~~~l~~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~ 80 (184)
T TIGR03800 1 KIGVLALQGAVREHARALEALGVEGVEVKRPEQLDEIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGL 80 (184)
T ss_pred CEEEEEccCCHHHHHHHHHHCCCEEEEECChHHhccCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHH
Confidence 79999999999999999999999999999988899999999999988887777776678899999999999999999999
Q ss_pred HHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCCcEEEEecC
Q 030035 82 IFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYP 161 (184)
Q Consensus 82 QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~v~vLa~~~ 161 (184)
|+|++++.+.. ...||++|+++.||.+|+|++||+..++.++++. .++.++|||+|+|.++|+++++||+++
T Consensus 81 qlL~~~~~~~~---~~~lg~~~~~v~~~~~g~~~~s~~~~l~~~~~~~-----~~~~~~~~h~~~v~~lp~~~~vla~~~ 152 (184)
T TIGR03800 81 IMLAKEIIGQK---EGYLGLLDMTVERNAYGRQVDSFEAEVDIKGVGD-----DPITGVFIRAPKIVSVGNGVEILAKVG 152 (184)
T ss_pred HHHHhhhccCC---CCccCcEEEEEEeeccCCccccEEEEeecccCCC-----CcceEEEEcCCCcccCCCCeEEEEEeC
Confidence 99999985432 2359999999999999999999999888766631 258999999999999999999999987
Q ss_pred CCCc
Q 030035 162 VPSN 165 (184)
Q Consensus 162 ~~~~ 165 (184)
+...
T Consensus 153 ~~~~ 156 (184)
T TIGR03800 153 NRIV 156 (184)
T ss_pred CeeE
Confidence 7543
No 6
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=100.00 E-value=2.2e-34 Score=223.52 Aligned_cols=158 Identities=35% Similarity=0.571 Sum_probs=134.8
Q ss_pred EEEEEecCCCHHHHHHHHHHCC--------CeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcC-C
Q 030035 2 VVGVLALQGSFNEHIAALKRLG--------VKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG-K 72 (184)
Q Consensus 2 ~IgVl~~qG~~~~~~~~L~~~G--------~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g-~ 72 (184)
-||||++||.|.||.+.++++- +++..|++++|++++|+||||||+|++|..+.++.++.+.|.+++.++ +
T Consensus 13 VIGVLALQGAFiEH~N~~~~c~~en~y~Ik~~~~tVKT~~D~aq~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k 92 (226)
T KOG3210|consen 13 VIGVLALQGAFIEHVNHVEKCIVENRYEIKLSVMTVKTKNDLAQCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSK 92 (226)
T ss_pred EEeeeehhhHHHHHHHHHHHhhccCcceEEEEEEeecCHHHHhhCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCc
Confidence 3899999999999999998642 234567889999999999999999999999999889999999999887 9
Q ss_pred cEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCC
Q 030035 73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP 152 (184)
Q Consensus 73 PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~ 152 (184)
|+||+|+||++|++.+.+.+. ....|++|+++|+||+||||..||....++..+- .....|+|.|||||.++++-+
T Consensus 93 ~~WGTCAGmI~LS~ql~nek~-~~~tL~~lkv~V~RN~FG~QaqSFT~~~~~snfi---~~~~~FpATFIRAPVie~ILD 168 (226)
T KOG3210|consen 93 VTWGTCAGMIYLSQQLSNEKK-LVKTLNLLKVKVKRNAFGRQAQSFTRICDFSNFI---PHCNDFPATFIRAPVIEEILD 168 (226)
T ss_pred cceeechhhhhhhhhhcCCcc-hhhhhhheeEEEeeccccchhhhheehhcccccc---cCcccCchhheechhHHHhcC
Confidence 999999999999999986433 6789999999999999999999998865544331 112479999999999999877
Q ss_pred CcEEEEecCCC
Q 030035 153 DVDVLADYPVP 163 (184)
Q Consensus 153 ~v~vLa~~~~~ 163 (184)
...|++.|..+
T Consensus 169 ~I~V~~l~~~~ 179 (226)
T KOG3210|consen 169 PIHVQVLYKLD 179 (226)
T ss_pred chhheEEEEec
Confidence 77777777666
No 7
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=100.00 E-value=1.1e-31 Score=213.84 Aligned_cols=154 Identities=56% Similarity=0.963 Sum_probs=139.2
Q ss_pred EEEEecCCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHH
Q 030035 3 VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLI 82 (184)
Q Consensus 3 IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~Q 82 (184)
||||++||++.++.+.|++.|++++.++..++++++|++|+|||.++.++.+.+...+.++|++++++|+|+||||+|+|
T Consensus 1 igvl~~qg~~~e~~~~l~~~g~~v~~v~~~~~l~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~G~q 80 (183)
T cd01749 1 IGVLALQGDFREHIRALERLGVEVIEVRTPEDLEGIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCAGLI 80 (183)
T ss_pred CEEEEecCCcHHHHHHHHHCCCeEEEECCHHHhccCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECHHHH
Confidence 79999999999999999999999999998888999999999999887777666666788999999999999999999999
Q ss_pred HHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCCcEEEEecCC
Q 030035 83 FLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYPV 162 (184)
Q Consensus 83 lLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~v~vLa~~~~ 162 (184)
+|++++.+. +..+++|++|++|.||.+|+++++++..+.+++.+ +++++++|+|+|.|.++|+++++||+++.
T Consensus 81 lL~~~~~~~--~~~~glG~~~~~v~~~~~g~~~g~~~~~l~~~~~~-----~~~~~~~~~h~~~v~~~p~~~~~la~~~~ 153 (183)
T cd01749 81 LLAKEVEDQ--GGQPLLGLLDITVRRNAFGRQVDSFEADLDIPGLG-----LGPFPAVFIRAPVIEEVGPGVEVLAEYDG 153 (183)
T ss_pred HHHHHhccc--CCCCccCceeEEEEeeccccccceEEEcCCCCcCC-----CCccEEEEEECcEEEEcCCCcEEEEecCC
Confidence 999999763 57899999999999999999999998887766542 35799999999999999999999999875
Q ss_pred C
Q 030035 163 P 163 (184)
Q Consensus 163 ~ 163 (184)
-
T Consensus 154 ~ 154 (183)
T cd01749 154 K 154 (183)
T ss_pred E
Confidence 3
No 8
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.97 E-value=1.1e-29 Score=203.35 Aligned_cols=153 Identities=54% Similarity=0.869 Sum_probs=136.7
Q ss_pred CEEEEEecCCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchH
Q 030035 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (184)
Q Consensus 1 m~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G 80 (184)
|||+|+.+|||+.++.++|++.|++++.++.+++++++|++|||||.+..++.+.+...+.+.|+++.++++|++|||+|
T Consensus 2 m~~~i~~~~g~~~~~~~~l~~~g~~~~~~~~~~~l~~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G 81 (189)
T PRK13525 2 MKIGVLALQGAVREHLAALEALGAEAVEVRRPEDLDEIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCAG 81 (189)
T ss_pred CEEEEEEcccCHHHHHHHHHHCCCEEEEeCChhHhccCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECHH
Confidence 89999999999999999999999999999988889999999999998777766666666788999999999999999999
Q ss_pred HHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCCcEEEEec
Q 030035 81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADY 160 (184)
Q Consensus 81 ~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~v~vLa~~ 160 (184)
+|+|++++++. ..+++|++|+++.||.+|+++.+++.++.+..+ +++++++++|++.|.++|+++++||+.
T Consensus 82 ~QlL~~~~gg~---~~~~lg~~~~~v~~~~~g~~~g~~~~~~~~~~~------~~~~~~~~~H~d~v~~lp~~~~vlA~~ 152 (189)
T PRK13525 82 MILLAKEIEGY---EQEHLGLLDITVRRNAFGRQVDSFEAELDIKGL------GEPFPAVFIRAPYIEEVGPGVEVLATV 152 (189)
T ss_pred HHHHHhhcccC---CCCceeeEEEEEEEccCCCceeeEEecccccCC------CCCeEEEEEeCceeeccCCCcEEEEEc
Confidence 99999999753 678999999999999999999998876555443 247999999999999999999999997
Q ss_pred CC
Q 030035 161 PV 162 (184)
Q Consensus 161 ~~ 162 (184)
++
T Consensus 153 ~~ 154 (189)
T PRK13525 153 GG 154 (189)
T ss_pred CC
Confidence 53
No 9
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.96 E-value=8.4e-29 Score=198.73 Aligned_cols=145 Identities=19% Similarity=0.311 Sum_probs=121.5
Q ss_pred EEEEEec-CCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCC-c-hhHHHHHHhcCChHHHHHHHHHcCCcEEEEc
Q 030035 2 VVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG-E-STTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (184)
Q Consensus 2 ~IgVl~~-qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG-~-~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC 78 (184)
.|+|+.+ -||+.++.++|+++|++++++++++++.++|+||+||+ . ++++..|.+ .++.+.|++ ..|+|+||||
T Consensus 1 mi~iidyg~gN~~s~~~al~~~g~~~~~v~~~~~l~~~D~lIlPG~g~~~~~~~~L~~-~gl~~~i~~--~~g~PvlGIC 77 (192)
T PRK13142 1 MIVIVDYGLGNISNVKRAIEHLGYEVVVSNTSKIIDQAETIILPGVGHFKDAMSEIKR-LNLNAILAK--NTDKKMIGIC 77 (192)
T ss_pred CEEEEEcCCccHHHHHHHHHHcCCCEEEEeCHHHhccCCEEEECCCCCHHHHHHHHHH-CCcHHHHHH--hCCCeEEEEC
Confidence 1889887 57999999999999999999999999999999999996 4 667776665 588999988 5689999999
Q ss_pred hHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCccee-----EeeecCceEEecCCC
Q 030035 79 AGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFR-----GVFIRAPAVLDVGPD 153 (184)
Q Consensus 79 ~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~-----a~firap~i~~~~~~ 153 (184)
+|||||++.+++ +..++||++|++|.| |+..+++||+|||+-. .+++ ++|+|||++. .++.
T Consensus 78 lGmQlL~~~~~e---g~~~GLgll~~~V~r---------f~~~~~vph~GWn~~~-~~~~l~~~~~yFVhSy~v~-~~~~ 143 (192)
T PRK13142 78 LGMQLMYEHSDE---GDASGLGFIPGNISR---------IQTEYPVPHLGWNNLV-SKHPMLNQDVYFVHSYQAP-MSEN 143 (192)
T ss_pred HHHHHHhhhccc---CCcCccCceeEEEEE---------CCCCCCCCcccccccC-CCCcccccEEEEECCCeEC-CCCC
Confidence 999999999843 357899999999988 5567889999998532 1344 8999999994 5678
Q ss_pred cEEEEecCCC
Q 030035 154 VDVLADYPVP 163 (184)
Q Consensus 154 v~vLa~~~~~ 163 (184)
+.+++.|..+
T Consensus 144 v~~~~~yg~~ 153 (192)
T PRK13142 144 VIAYAQYGAD 153 (192)
T ss_pred EEEEEECCCe
Confidence 9999999653
No 10
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.95 E-value=2.6e-27 Score=189.23 Aligned_cols=151 Identities=34% Similarity=0.535 Sum_probs=124.1
Q ss_pred CEEEEEec-CCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcC-C-chhHHHHHHhcCChHHHHHHHHHcCCcEEEE
Q 030035 1 MVVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG-G-ESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (184)
Q Consensus 1 m~IgVl~~-qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipG-G-~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGI 77 (184)
|+|+|+.+ -||+.++.++|+++|+++++.++++++.++|+||+|| | +...|+.|.+. ++.+.|++.++.++|+|||
T Consensus 2 ~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i~~AD~liLPGVGaf~~am~~L~~~-gl~~~i~~~~~~~kP~LGI 80 (204)
T COG0118 2 MMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEILKADKLILPGVGAFGAAMANLRER-GLIEAIKEAVESGKPFLGI 80 (204)
T ss_pred CEEEEEEcCcchHHHHHHHHHHcCCeeEEecCHHHHhhCCEEEecCCCCHHHHHHHHHhc-chHHHHHHHHhcCCCEEEE
Confidence 68999987 6899999999999999999999999999999999999 6 68889999886 8999999999999999999
Q ss_pred chHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeecc-ccCCccccCC-----------CCCcceeEeeecCc
Q 030035 78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAE-LSVPALASQE-----------GGPETFRGVFIRAP 145 (184)
Q Consensus 78 C~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~-~~~~~~~~~~-----------~~~~~~~a~firap 145 (184)
|+|||||.+.+++ .+..++||+++++|.| |+.+ +.+||||||+ +.++.-+..|.|+.
T Consensus 81 ClGMQlLfe~SeE--~~~~~GLg~i~G~V~r---------~~~~~~kvPHMGWN~l~~~~~~~l~~gi~~~~~~YFVHSY 149 (204)
T COG0118 81 CLGMQLLFERSEE--GGGVKGLGLIPGKVVR---------FPAEDLKVPHMGWNQVEFVRGHPLFKGIPDGAYFYFVHSY 149 (204)
T ss_pred eHhHHhhhhcccc--cCCCCCcceecceEEE---------cCCCCCCCCccccceeeccCCChhhcCCCCCCEEEEEEEE
Confidence 9999999999875 3345899999876655 5554 8999999993 22222578899999
Q ss_pred eEEecCCCcEEE-EecCCC
Q 030035 146 AVLDVGPDVDVL-ADYPVP 163 (184)
Q Consensus 146 ~i~~~~~~v~vL-a~~~~~ 163 (184)
++....++..+. +.|..+
T Consensus 150 ~~~~~~~~~v~~~~~YG~~ 168 (204)
T COG0118 150 YVPPGNPETVVATTDYGEP 168 (204)
T ss_pred eecCCCCceEEEeccCCCe
Confidence 988744443333 444433
No 11
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.95 E-value=2.5e-26 Score=185.16 Aligned_cols=157 Identities=47% Similarity=0.760 Sum_probs=129.3
Q ss_pred CEEEEEecCCCHHHHHH----HHHHCCCeEEE--EcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcE
Q 030035 1 MVVGVLALQGSFNEHIA----ALKRLGVKGVE--IRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (184)
Q Consensus 1 m~IgVl~~qG~~~~~~~----~L~~~G~~v~~--v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pv 74 (184)
||||||++||.+.++.. +|++.|.++.+ ++.++++.++|+||||||..+.+..+.+..++.+.|++++++++|+
T Consensus 1 ~~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~~~l~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pi 80 (200)
T PRK13527 1 MKIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRPGDLPDCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPI 80 (200)
T ss_pred CEEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCChHHhccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeE
Confidence 89999999999988654 56667875544 4556678899999999998777666666567899999999999999
Q ss_pred EEEchHHHHHHHhhhccc--CCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCC
Q 030035 75 WGTCAGLIFLANKAVGQK--LGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP 152 (184)
Q Consensus 75 lGIC~G~QlLa~~~~~~~--~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~ 152 (184)
+|||+|+|+|++++++.. ....+++|++++++.+|.+|++..+++.++.+.. .|+++.+++.|++.+..+|+
T Consensus 81 lGIC~G~Qll~~~~gg~~v~~~~~~~lG~~~~~v~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~H~~~v~~lp~ 154 (200)
T PRK13527 81 LGTCAGLILLAKEVGDDRVTKTEQPLLGLMDVTVKRNAFGRQRDSFEAEIDLSG------LDGPFHAVFIRAPAITKVGG 154 (200)
T ss_pred EEECHHHHHHHhhhcCCccCCCCCceeeeeEEEEeeccccCccccEEEeEeccc------cCCcceEEEEccccccccCC
Confidence 999999999999986422 2345789999999999999999988876654443 34689999999999999999
Q ss_pred CcEEEEecCCC
Q 030035 153 DVDVLADYPVP 163 (184)
Q Consensus 153 ~v~vLa~~~~~ 163 (184)
++++||++++-
T Consensus 155 ~~~~la~~~~~ 165 (200)
T PRK13527 155 DVEVLAKLDDR 165 (200)
T ss_pred CeEEEEEECCE
Confidence 99999988754
No 12
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.92 E-value=2.4e-24 Score=175.33 Aligned_cols=148 Identities=20% Similarity=0.366 Sum_probs=120.0
Q ss_pred CEEEEEecC-CCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCc--hhHHHHHHhcCChHHHHHHHHHcCCcEEEE
Q 030035 1 MVVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGE--STTMARLAEYHNLFPALREFVKMGKPVWGT 77 (184)
Q Consensus 1 m~IgVl~~q-G~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~--~~~~~~l~~~~~l~~~l~~~~~~g~PvlGI 77 (184)
|||||++++ ||+.++.++|+++|+++.++++++++.++|+||+||+. ...+..|.+ .++.+.|++++++++|+|||
T Consensus 2 ~~v~iid~~~GN~~sl~~al~~~g~~v~vv~~~~~l~~~d~iIlPG~g~~~~~~~~l~~-~gl~~~i~~~~~~~~pvlGI 80 (210)
T CHL00188 2 MKIGIIDYSMGNLHSVSRAIQQAGQQPCIINSESELAQVHALVLPGVGSFDLAMKKLEK-KGLITPIKKWIAEGNPFIGI 80 (210)
T ss_pred cEEEEEEcCCccHHHHHHHHHHcCCcEEEEcCHHHhhhCCEEEECCCCchHHHHHHHHH-CCHHHHHHHHHHcCCCEEEE
Confidence 799999999 99999999999999999999988888899999999943 356667665 47889999999999999999
Q ss_pred chHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCC-----------------CCCcceeEe
Q 030035 78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQE-----------------GGPETFRGV 140 (184)
Q Consensus 78 C~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~-----------------~~~~~~~a~ 140 (184)
|+|||+|++..++ +..++||+++++|.|-.- ...+.+||+||++ +.|+.++++
T Consensus 81 ClG~Qll~~~~~~---~~~~glg~~~G~v~~~~~-------~~~~~~p~~Gw~~v~~~~~~~~~~~~~lf~~l~~~~~v~ 150 (210)
T CHL00188 81 CLGLHLLFETSEE---GKEEGLGIYKGQVKRLKH-------SPVKVIPHMGWNRLECQNSECQNSEWVNWKAWPLNPWAY 150 (210)
T ss_pred CHHHHHHhhcccc---CCcCCccceeEEEEECCC-------CCCCccCccCCccceecCCcccccCChhhcCCCCCCEEE
Confidence 9999999998754 467899999998887421 1256789999981 235677899
Q ss_pred eecCceEEecCCCcEEEEecC
Q 030035 141 FIRAPAVLDVGPDVDVLADYP 161 (184)
Q Consensus 141 firap~i~~~~~~v~vLa~~~ 161 (184)
|.|+..+. |++.++|+...
T Consensus 151 ~~HS~~v~--p~~~~~l~~t~ 169 (210)
T CHL00188 151 FVHSYGVM--PKSQACATTTT 169 (210)
T ss_pred EeCccEec--CCCCceEEEEE
Confidence 99997774 44556666553
No 13
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.89 E-value=4.5e-22 Score=161.65 Aligned_cols=151 Identities=26% Similarity=0.363 Sum_probs=117.1
Q ss_pred CEEEEEecC-CCHHHHHHHHHHCCC--eEEEEcCCCCCCCCCEEEEcCCch--hHHHHHHhcCChHHHHHHHH-HcCCcE
Q 030035 1 MVVGVLALQ-GSFNEHIAALKRLGV--KGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREFV-KMGKPV 74 (184)
Q Consensus 1 m~IgVl~~q-G~~~~~~~~L~~~G~--~v~~v~~~~~l~~~DglIipGG~~--~~~~~l~~~~~l~~~l~~~~-~~g~Pv 74 (184)
|||+|+.+. ||+.++.++|++.|+ ++.+++++++++++|+|||||+.. +.+..+.+. ++.+.|+++. +.++|+
T Consensus 2 ~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~~~l~~~d~lIlpG~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~Pv 80 (209)
T PRK13146 2 MTVAIIDYGSGNLRSAAKALERAGAGADVVVTADPDAVAAADRVVLPGVGAFADCMRGLRAV-GLGEAVIEAVLAAGRPF 80 (209)
T ss_pred CeEEEEECCCChHHHHHHHHHHcCCCccEEEECCHHHhcCCCEEEECCCCcHHHHHHHHHHC-CcHHHHHHHHHhCCCcE
Confidence 799999984 589999999999999 888899889999999999999642 334455553 5666665554 589999
Q ss_pred EEEchHHHHHHHhhhcccCCCccccCcceeeeeec-ccCceeEEeeccccCCccccC-----------CCCCcceeEeee
Q 030035 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN-FFGSQIQSFEAELSVPALASQ-----------EGGPETFRGVFI 142 (184)
Q Consensus 75 lGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn-~~Grqv~sf~~~~~~~~~~~~-----------~~~~~~~~a~fi 142 (184)
||||+|+|+|++...+ .+...+||+++++|.|+ +.|. ....|++||+ .+.|+.+.+.|-
T Consensus 81 lGiC~G~q~l~~~~~e--~~~~~glg~l~g~v~~~~~~~~-------~~~~p~~G~~~v~~~~~~~lf~~~~~~~~v~~~ 151 (209)
T PRK13146 81 LGICVGMQLLFERGLE--HGDTPGLGLIPGEVVRFQPDGP-------ALKVPHMGWNTVDQTRDHPLFAGIPDGARFYFV 151 (209)
T ss_pred EEECHHHHHHhhcccc--cCCCCCcceEeEEEEEcCCCCC-------CCccCccChHHeeeCCCChhccCCCCCCEEEEE
Confidence 9999999999998543 34688999999999997 4432 2345667765 134557899999
Q ss_pred cCceEEecCCCcEEEEecCC
Q 030035 143 RAPAVLDVGPDVDVLADYPV 162 (184)
Q Consensus 143 rap~i~~~~~~v~vLa~~~~ 162 (184)
|+..+...+ +.+++|+.+.
T Consensus 152 Hs~~v~~~~-~~~~la~s~~ 170 (209)
T PRK13146 152 HSYYAQPAN-PADVVAWTDY 170 (209)
T ss_pred eEEEEEcCC-CCcEEEEEcC
Confidence 999987665 5688887654
No 14
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.88 E-value=9.6e-22 Score=158.23 Aligned_cols=145 Identities=24% Similarity=0.403 Sum_probs=111.9
Q ss_pred CEEEEEec-CCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcC-Cc-hhHHHHHHhcCChHHHHHHHHHcCCcEEEE
Q 030035 1 MVVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG-GE-STTMARLAEYHNLFPALREFVKMGKPVWGT 77 (184)
Q Consensus 1 m~IgVl~~-qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipG-G~-~~~~~~l~~~~~l~~~l~~~~~~g~PvlGI 77 (184)
|||+|+.+ .||+.++.++|++.|+++.++++++++.++|+||||| |. .+.+..+.+ .++.+.|++ .++|||||
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~~~~~d~iIlPG~G~~~~~~~~l~~-~~l~~~i~~---~~~PilGI 76 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDVILAADKLFLPGVGTAQAAMDQLRE-RELIDLIKA---CTQPVLGI 76 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHHhCCCCEEEECCCCchHHHHHHHHH-cChHHHHHH---cCCCEEEE
Confidence 89999987 5799999999999999999999988899999999999 65 445566654 367777775 48999999
Q ss_pred chHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccC-----------CCCCcceeEeeecCce
Q 030035 78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQ-----------EGGPETFRGVFIRAPA 146 (184)
Q Consensus 78 C~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~-----------~~~~~~~~a~firap~ 146 (184)
|+|||+|++++.+ .+...+||+++++|.|-. .....+|++||+ .+.|+.+.+.|.|...
T Consensus 77 ClG~Qll~~~~~~--~~~~~~lg~~~g~v~~~~--------~~~~~~p~~G~~~v~~~~~~~l~~~l~~~~~v~~~Hs~~ 146 (196)
T PRK13170 77 CLGMQLLGERSEE--SGGVDCLGIIDGPVKKMT--------DFGLPLPHMGWNQVTPQAGHPLFQGIEDGSYFYFVHSYA 146 (196)
T ss_pred CHHHHHHhhhccc--CCCCCCcccccEEEEECC--------CCCCCCCccccceeEeCCCChhhhCCCcCCEEEEECeee
Confidence 9999999999864 233788999999998831 012345666665 1345578899999853
Q ss_pred EEecCCCcEEEEecCC
Q 030035 147 VLDVGPDVDVLADYPV 162 (184)
Q Consensus 147 i~~~~~~v~vLa~~~~ 162 (184)
+|++..+||+.+.
T Consensus 147 ---lp~~~~~la~s~~ 159 (196)
T PRK13170 147 ---MPVNEYTIAQCNY 159 (196)
T ss_pred ---cCCCCcEEEEecC
Confidence 4667788887654
No 15
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.87 E-value=2.5e-21 Score=157.54 Aligned_cols=135 Identities=21% Similarity=0.367 Sum_probs=109.0
Q ss_pred EEEEEec-CCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCc--hhHHHHHHhcCChHHHHHHHHHcCCcEEEEc
Q 030035 2 VVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGE--STTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (184)
Q Consensus 2 ~IgVl~~-qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~--~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC 78 (184)
.|+|+.+ -||..+..++|++.+.++.++++++++.++|+||+||+. ++.+..+.+ .++.+.|++++++++|+||||
T Consensus 1 ~i~iidyg~gNl~s~~~al~~~~~~~~~~~~~~~l~~~d~iIlPG~g~~~~~~~~l~~-~gl~~~i~~~~~~~~pilGiC 79 (210)
T PRK14004 1 MIAILDYGMGNIHSCLKAVSLYTKDFVFTSDPETIENSKALILPGDGHFDKAMENLNS-TGLRSTIDKHVESGKPLFGIC 79 (210)
T ss_pred CEEEEECCCchHHHHHHHHHHcCCeEEEECCHHHhccCCEEEECCCCchHHHHHHHHH-cCcHHHHHHHHHcCCCEEEEC
Confidence 0889887 579999999999999999999999999999999999974 567777755 589999999999999999999
Q ss_pred hHHHHHHHhhhcccC----CCccccCcceeeeeecccCceeEEeeccccCCccccCC-------------CCCcceeEee
Q 030035 79 AGLIFLANKAVGQKL----GGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQE-------------GGPETFRGVF 141 (184)
Q Consensus 79 ~G~QlLa~~~~~~~~----~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~-------------~~~~~~~a~f 141 (184)
+|||+|++.+.+... +..++||+++.+|.|-. + ....+||+|||. +.|+++++.|
T Consensus 80 ~G~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~~~~-~-------~~~~~ph~Gw~~v~~~~~~~~~lf~~l~~~~~v~~ 151 (210)
T PRK14004 80 IGFQILFESSEETNQGTKKEQIEGLGYIKGKIKKFE-G-------KDFKVPHIGWNRLQIRRKDKSKLLKGIGDQSFFYF 151 (210)
T ss_pred HhHHHHHHhcccccCCCcCcccCCcceeEEEEEEcC-C-------CCCcCCccCcccceeccCCCCccccCCCCCCEEEE
Confidence 999999999975321 24689999999988743 1 135679999982 1233556777
Q ss_pred ecCc
Q 030035 142 IRAP 145 (184)
Q Consensus 142 irap 145 (184)
.|+.
T Consensus 152 ~HS~ 155 (210)
T PRK14004 152 IHSY 155 (210)
T ss_pred ecee
Confidence 7765
No 16
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.87 E-value=4.9e-21 Score=154.49 Aligned_cols=149 Identities=25% Similarity=0.372 Sum_probs=109.8
Q ss_pred EEEEEec-CCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCch--hHHHHHHhcCChHHHHHHHH-HcCCcEEEE
Q 030035 2 VVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREFV-KMGKPVWGT 77 (184)
Q Consensus 2 ~IgVl~~-qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~--~~~~~l~~~~~l~~~l~~~~-~~g~PvlGI 77 (184)
.|+|+.+ -||..++.++|++.|++++++++++++.++|+|||||+.+ +.+..+.+ .++.+.|++++ +.++|+|||
T Consensus 1 ~i~iid~g~~n~~~v~~~l~~~g~~~~~~~~~~~l~~~d~lilPG~g~~~~~~~~l~~-~~~~~~l~~~~~~~~~pvlGi 79 (201)
T PRK13152 1 MIALIDYKAGNLNSVAKAFEKIGAINFIAKNPKDLQKADKLLLPGVGSFKEAMKNLKE-LGFIEALKEQVLVQKKPILGI 79 (201)
T ss_pred CEEEEECCCCcHHHHHHHHHHCCCeEEEECCHHHHcCCCEEEECCCCchHHHHHHHHH-cCcHHHHHHHHHhCCCcEEEE
Confidence 1888887 5699999999999999999999988899999999999754 33444544 46778887764 779999999
Q ss_pred chHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccC-----------CCCCcceeEeeecCce
Q 030035 78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQ-----------EGGPETFRGVFIRAPA 146 (184)
Q Consensus 78 C~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~-----------~~~~~~~~a~firap~ 146 (184)
|+|||+|+....+ ++..++||+++.+|.|-... ....+||++|+ .+.+++++++|.|++.
T Consensus 80 C~G~Q~l~~~~~~--~~~~~~lg~~~g~v~~~~~~-------~~~~~~~~g~~~v~~~~~~~l~~~l~~~~~~~~vHS~~ 150 (201)
T PRK13152 80 CLGMQLFLERGYE--GGVCEGLGFIEGEVVKFEED-------LNLKIPHMGWNELEILKQSPLYQGIPEKSDFYFVHSFY 150 (201)
T ss_pred CHhHHHHhhcccc--cCCcCCcccccEEEEECCCC-------CCCcCCccCeEEEEECCCChhhhCCCCCCeEEEEcccE
Confidence 9999999997432 24578999999988772100 01223444443 2345578999999999
Q ss_pred EEecCCCcEEEEec
Q 030035 147 VLDVGPDVDVLADY 160 (184)
Q Consensus 147 i~~~~~~v~vLa~~ 160 (184)
+..++..+...+.+
T Consensus 151 v~~~~~~v~a~~~~ 164 (201)
T PRK13152 151 VKCKDEFVSAKAQY 164 (201)
T ss_pred eecCCCcEEEEECC
Confidence 98776544444444
No 17
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.85 E-value=4.5e-20 Score=148.48 Aligned_cols=153 Identities=27% Similarity=0.349 Sum_probs=113.2
Q ss_pred EEEEEec-CCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCC-c-hhHHHHHHhcCChHHHHHHHHHcCCcEEEEc
Q 030035 2 VVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG-E-STTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (184)
Q Consensus 2 ~IgVl~~-qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG-~-~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC 78 (184)
+|.|+.+ .||+.++.++|+++|++++++++++++.++|+||+||+ . ++.+..+.. .++.+.|+++++.++|+||||
T Consensus 1 ~i~vid~g~gn~~~~~~~l~~~g~~v~~~~~~~~l~~~d~lilpG~g~~~~~~~~l~~-~~~~~~i~~~~~~~~PvlGiC 79 (199)
T PRK13181 1 MIAIIDYGAGNLRSVANALKRLGVEAVVSSDPEEIAGADKVILPGVGAFGQAMRSLRE-SGLDEALKEHVEKKQPVLGIC 79 (199)
T ss_pred CEEEEeCCCChHHHHHHHHHHCCCcEEEEcChHHhccCCEEEECCCCCHHHHHHHHHH-CChHHHHHHHHHCCCCEEEEC
Confidence 1888887 46999999999999999999998888999999999995 3 344555544 468899999999999999999
Q ss_pred hHHHHHHHhhhcccCCCccccCcceeeeeecccC----ceeEEeeccccC--CccccCCCCCcceeEeeecCceEEecCC
Q 030035 79 AGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFG----SQIQSFEAELSV--PALASQEGGPETFRGVFIRAPAVLDVGP 152 (184)
Q Consensus 79 ~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~G----rqv~sf~~~~~~--~~~~~~~~~~~~~~a~firap~i~~~~~ 152 (184)
+|+|||++++.+ +..++||+++.+|.|+..+ .++...+..+.- |-+ .+.|+++.+++.|...+...+
T Consensus 80 ~G~Qll~~~~~~---~~~~glg~l~~~v~~~~~~~~~~~~~G~~~v~~~~~~~lf---~~l~~~~~~~~~Hs~~v~~~~- 152 (199)
T PRK13181 80 LGMQLLFESSEE---GNVKGLGLIPGDVKRFRSEPLKVPQMGWNSVKPLKESPLF---KGIEEGSYFYFVHSYYVPCED- 152 (199)
T ss_pred HhHHHhhhhccc---CCcCCcceEEEEEEEcCCCCCCCCccCccccccCCCChhH---cCCCCCCEEEEeCeeEeccCC-
Confidence 999999999864 4678999999999986432 122211111110 001 234557888899987776555
Q ss_pred CcEEEEecCC
Q 030035 153 DVDVLADYPV 162 (184)
Q Consensus 153 ~v~vLa~~~~ 162 (184)
...++|+.+.
T Consensus 153 ~~~~lA~s~~ 162 (199)
T PRK13181 153 PEDVLATTEY 162 (199)
T ss_pred cccEEEEEcC
Confidence 3568888764
No 18
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.82 E-value=2.9e-19 Score=162.62 Aligned_cols=145 Identities=25% Similarity=0.372 Sum_probs=115.0
Q ss_pred EEEEEec-CCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCch--hHHHHHHhcCChHHHHHHHHHcCCcEEEEc
Q 030035 2 VVGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (184)
Q Consensus 2 ~IgVl~~-qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~--~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC 78 (184)
+|+|+.+ -||+.++.++|+++|+++.+++.+++++++|+|||||+.+ +.|..+.+ .++.+.|+++++.++|+||||
T Consensus 8 ~i~iiDyG~GN~~sl~~al~~~G~~v~~v~~~~~l~~~D~lIlpG~gs~~~~m~~L~~-~gl~~~i~~~i~~g~PvLGIC 86 (538)
T PLN02617 8 EVTLLDYGAGNVRSVRNAIRHLGFTIKDVQTPEDILNADRLIFPGVGAFGSAMDVLNN-RGMAEALREYIQNDRPFLGIC 86 (538)
T ss_pred eEEEEECCCCCHHHHHHHHHHCCCeEEEECChhhhccCCEEEECCCCCHHHHHHHHHH-cCHHHHHHHHHHcCCCEEEEC
Confidence 6888887 5799999999999999999999888899999999999643 45655554 478899999999999999999
Q ss_pred hHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCC-----------CCCcceeEeeecCceE
Q 030035 79 AGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQE-----------GGPETFRGVFIRAPAV 147 (184)
Q Consensus 79 ~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~-----------~~~~~~~a~firap~i 147 (184)
+|||||++++.+ .+...+||++++++.|. +++. .+.+|++||+. +.+ .++++|.|+..+
T Consensus 87 ~G~QlLa~~~~E--~g~~~glg~l~G~v~~~--~~~~-----~~~vp~iGw~~V~~~~~spL~~~l~-~~~vy~vHSy~v 156 (538)
T PLN02617 87 LGLQLLFESSEE--NGPVEGLGVIPGVVGRF--DSSN-----GLRVPHIGWNALQITKDSELLDGVG-GRHVYFVHSYRA 156 (538)
T ss_pred HHHHHHhhhhhh--cCCccCcccccceEEEC--CccC-----CCCCCeecceEEEecCCChhHhcCC-CcEEEEEeEEEE
Confidence 999999998853 35678999999998883 2211 35678888873 222 457889999888
Q ss_pred EecCCCcEEE
Q 030035 148 LDVGPDVDVL 157 (184)
Q Consensus 148 ~~~~~~v~vL 157 (184)
..++.+...+
T Consensus 157 ~~~p~~~~~v 166 (538)
T PLN02617 157 TPSDENKDWV 166 (538)
T ss_pred EecCCCCcEE
Confidence 7776554433
No 19
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.82 E-value=5.1e-19 Score=142.07 Aligned_cols=153 Identities=24% Similarity=0.353 Sum_probs=111.6
Q ss_pred EEEEec-CCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCch--hHHHHHHhcCChHHHHHHHHHcCCcEEEEch
Q 030035 3 VGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (184)
Q Consensus 3 IgVl~~-qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~--~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~ 79 (184)
|+|+.+ .||+.++.++|+++|+++.+++..++++++|+||||||.. +.+..+ +..++.+.|+++.++++||||||+
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~~l~~~d~iiipG~~~~~~~~~~~-~~~~~~~~i~~~~~~~~pilGiC~ 79 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPEEILSADKLILPGVGAFGDAMANL-RERGLIEALKEAIASGKPFLGICL 79 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcChHHhccCCEEEECCCCcHHHHHHHH-HHcChHHHHHHHHHCCCcEEEECH
Confidence 577777 4578889999999999999999888889999999999632 223334 334678999999999999999999
Q ss_pred HHHHHHHhhhcccCCCccccCcceeeeeecccC--c---eeEEeecccc--CCccccCCCCCcceeEeeecCceEEecCC
Q 030035 80 GLIFLANKAVGQKLGGQELVGGLDCTVHRNFFG--S---QIQSFEAELS--VPALASQEGGPETFRGVFIRAPAVLDVGP 152 (184)
Q Consensus 80 G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~G--r---qv~sf~~~~~--~~~~~~~~~~~~~~~a~firap~i~~~~~ 152 (184)
|+|+|++++.+ ++..++||+++++|.|+.-+ . ++.-...... -+-+ .+.|+.+++.+.|...+... +
T Consensus 80 G~q~l~~~~~~--g~~~~~lg~~~g~v~~~~~~~~~~~~~~G~~~v~~~~~~~lf---~~l~~~~~v~~~Hs~~v~~~-~ 153 (198)
T cd01748 80 GMQLLFESSEE--GGGTKGLGLIPGKVVRFPASEGLKVPHMGWNQLEITKESPLF---KGIPDGSYFYFVHSYYAPPD-D 153 (198)
T ss_pred HHHHhcccccc--CCCCCCCCCcceEEEECCCCCCceEEEeccceEEECCCChhh---hCCCCCCeEEEEeEEEEecC-C
Confidence 99999999753 34678999999999985432 1 1111111110 0111 23456788999999888754 4
Q ss_pred CcEEEEecCC
Q 030035 153 DVDVLADYPV 162 (184)
Q Consensus 153 ~v~vLa~~~~ 162 (184)
+..+||+.++
T Consensus 154 ~~~~la~s~~ 163 (198)
T cd01748 154 PDYILATTDY 163 (198)
T ss_pred cceEEEEecC
Confidence 5788998764
No 20
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.81 E-value=1.1e-18 Score=140.89 Aligned_cols=154 Identities=26% Similarity=0.358 Sum_probs=112.5
Q ss_pred EEEEEecCC-CHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCch--hHHHHHHhcCChHHHHHHHHHcCCcEEEEc
Q 030035 2 VVGVLALQG-SFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGES--TTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (184)
Q Consensus 2 ~IgVl~~qG-~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~--~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC 78 (184)
+|.||.+.+ |...+.++|++.|+++.+++++++++++|+||||||.. +.+..+.. .++.++|+++++.++|+||||
T Consensus 1 ~i~~~d~~~~~~~~i~~~l~~~G~~v~~~~~~~~l~~~d~iiipG~~~~~~~~~~~~~-~~~~~~i~~~~~~~~pvlGIC 79 (205)
T PRK13141 1 MIAIIDYGMGNLRSVEKALERLGAEAVITSDPEEILAADGVILPGVGAFPDAMANLRE-RGLDEVIKEAVASGKPLLGIC 79 (205)
T ss_pred CEEEEEcCCchHHHHHHHHHHCCCeEEEECCHHHhccCCEEEECCCCchHHHHHHHHH-cChHHHHHHHHHCCCcEEEEC
Confidence 478888854 67778899999999999999888899999999999642 33333332 467889999999999999999
Q ss_pred hHHHHHHHhhhcccCCCccccCcceeeeeecccCc-----eeEEeecccc--CCccccCCCCCcceeEeeecCceEEecC
Q 030035 79 AGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGS-----QIQSFEAELS--VPALASQEGGPETFRGVFIRAPAVLDVG 151 (184)
Q Consensus 79 ~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Gr-----qv~sf~~~~~--~~~~~~~~~~~~~~~a~firap~i~~~~ 151 (184)
+|+|+|++.+.+ .+.+.+||++++++.|+..+. +.......+. -+-+ .+.|..+.+.+.|+..+ .++
T Consensus 80 ~G~Qll~~~~~~--~~~~~~lg~l~g~v~~~~~~~~~~~~~~g~~~i~~~~~~~l~---~~l~~~~~v~~~Hs~~v-~~~ 153 (205)
T PRK13141 80 LGMQLLFESSEE--FGETEGLGLLPGRVRRFPPEEGLKVPHMGWNQLELKKESPLL---KGIPDGAYVYFVHSYYA-DPC 153 (205)
T ss_pred HHHHHhhhcccc--CCCCCccceEEEEEEEcCCCCCCcccEecCccceeCCCChhh---hCCCCCCEEEEECeeEe-ccC
Confidence 999999998753 456889999999999975221 1111111111 0111 23455678888898877 467
Q ss_pred CCcEEEEecCC
Q 030035 152 PDVDVLADYPV 162 (184)
Q Consensus 152 ~~v~vLa~~~~ 162 (184)
++..++|+.++
T Consensus 154 ~~~~v~a~~~~ 164 (205)
T PRK13141 154 DEEYVAATTDY 164 (205)
T ss_pred CcCeEEEEEeC
Confidence 78899998653
No 21
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=99.80 E-value=3.5e-19 Score=143.52 Aligned_cols=103 Identities=19% Similarity=0.380 Sum_probs=88.1
Q ss_pred ecCCCHHHHHHHHHHCCCeEEEEcCC--CCCCCCCEEEEcCCchhH-HHHHHhcCChHHHHHHHHHcCCcEEEEchHHHH
Q 030035 7 ALQGSFNEHIAALKRLGVKGVEIRKP--DQLQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKPVWGTCAGLIF 83 (184)
Q Consensus 7 ~~qG~~~~~~~~L~~~G~~v~~v~~~--~~l~~~DglIipGG~~~~-~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~Ql 83 (184)
||.-.|.++.++|+++|++++.+++. +++.++|+||||||+++. +.+|.++.++.+.|++++++|+|++|||.||||
T Consensus 8 aF~f~y~e~~~~l~~~G~~v~~~s~~~~~~l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~ql 87 (198)
T cd03130 8 AFNFYYPENLELLEAAGAELVPFSPLKDEELPDADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGLMY 87 (198)
T ss_pred ccccccHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccHHH
Confidence 46667999999999999999999874 667789999999997654 567766557889999999999999999999999
Q ss_pred HHHhhhcccCCCccccCcceeeeeec
Q 030035 84 LANKAVGQKLGGQELVGGLDCTVHRN 109 (184)
Q Consensus 84 La~~~~~~~~~~~~~LG~ldv~v~rn 109 (184)
|++.+.+..+...++||++|+++.+.
T Consensus 88 L~~~~~d~~g~~~~glGll~~~~~~~ 113 (198)
T cd03130 88 LGESLDDEEGQSYPMAGVLPGDARMT 113 (198)
T ss_pred HHHHhhccCCCEeccccccceeeEEc
Confidence 99999875444678999999999874
No 22
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.80 E-value=4e-18 Score=137.47 Aligned_cols=152 Identities=22% Similarity=0.311 Sum_probs=109.8
Q ss_pred CEEEEEecC-CCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCc--hhHHHHHHhcCChHHHHHHHHHcCCcEEEE
Q 030035 1 MVVGVLALQ-GSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGE--STTMARLAEYHNLFPALREFVKMGKPVWGT 77 (184)
Q Consensus 1 m~IgVl~~q-G~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~--~~~~~~l~~~~~l~~~l~~~~~~g~PvlGI 77 (184)
|||.||.+. ||..++.++|+++|+++.+++++++++++|++|||||. +..+.++. .+.+.|++++++++|+|||
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~d~iii~G~~~~~~~~~~~~---~~~~~i~~~~~~~~PilgI 77 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEEILDADGIVLPGVGAFGAAMENLS---PLRDVILEAARSGKPFLGI 77 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHHHccCCEEEECCCCCHHHHHHHHH---HHHHHHHHHHHcCCCEEEE
Confidence 899999985 57788999999999999999887778899999999963 33333332 4678899999999999999
Q ss_pred chHHHHHHHhhhcccCCCccccCcceeeeeecccCc---eeEEeeccc--cCCccccCCCCCcceeEeeecCceEEecCC
Q 030035 78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGS---QIQSFEAEL--SVPALASQEGGPETFRGVFIRAPAVLDVGP 152 (184)
Q Consensus 78 C~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Gr---qv~sf~~~~--~~~~~~~~~~~~~~~~a~firap~i~~~~~ 152 (184)
|+|+|+|++++.+ +...+++|+++.++.++..+. +...-...+ +-|-+ .+.+ .+...|.|++.+. .++
T Consensus 78 C~G~q~l~~~~~~--g~~~~~lg~~~g~v~~~~~~~~~~~~g~~~v~~~~~~~l~---~~l~-~~~~~~~Hs~~~~-~~~ 150 (200)
T PRK13143 78 CLGMQLLFESSEE--GGGVRGLGLFPGRVVRFPAGVKVPHMGWNTVKVVKDCPLF---EGID-GEYVYFVHSYYAY-PDD 150 (200)
T ss_pred CHHHHHHhhhhcc--CCCCCCcceeeEEEEEcCCCCCCCeecceEEEEcCCChhh---ccCC-CcEEEEEeeeeeC-CCC
Confidence 9999999998753 456789999999998753321 111111011 10111 1222 3457889998775 556
Q ss_pred CcEEEEecCC
Q 030035 153 DVDVLADYPV 162 (184)
Q Consensus 153 ~v~vLa~~~~ 162 (184)
+..+||+.++
T Consensus 151 ~~~~la~~~~ 160 (200)
T PRK13143 151 EDYVVATTDY 160 (200)
T ss_pred cceEEEEEcC
Confidence 7899998775
No 23
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.78 E-value=4.4e-18 Score=136.86 Aligned_cols=151 Identities=26% Similarity=0.323 Sum_probs=106.5
Q ss_pred EEEEec-CCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCC-c-hhHHHHHHhcCChHHHHHHHHHcCCcEEEEch
Q 030035 3 VGVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG-E-STTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (184)
Q Consensus 3 IgVl~~-qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG-~-~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~ 79 (184)
|+|+.+ .||+..+.++|++.|+++.+++++++++++|+||+||+ . ++.++.+.+. +....++++++.++||||||+
T Consensus 1 ~~~~~~~~gn~~~l~~~l~~~g~~v~v~~~~~~l~~~d~lii~G~~~~~~~~~~l~~~-~~~~l~~~~~~~~~pvlGiC~ 79 (196)
T TIGR01855 1 IVIIDYGVGNLGSVKRALKRVGAEPVVVKDSKEAELADKLILPGVGAFGAAMARLREN-GLDLFVELVVRLGKPVLGICL 79 (196)
T ss_pred CEEEecCCcHHHHHHHHHHHCCCcEEEEcCHHHhccCCEEEECCCCCHHHHHHHHHHc-CcHHHHHHHHhCCCCEEEECH
Confidence 466766 56889999999999999999998878899999999994 3 3456666653 333444888889999999999
Q ss_pred HHHHHHHhhhcccCCCccccCcceeeeeecccC--ceeEEeeccccC--CccccCCCCCcceeEeeecCceEEecCCCcE
Q 030035 80 GLIFLANKAVGQKLGGQELVGGLDCTVHRNFFG--SQIQSFEAELSV--PALASQEGGPETFRGVFIRAPAVLDVGPDVD 155 (184)
Q Consensus 80 G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~G--rqv~sf~~~~~~--~~~~~~~~~~~~~~a~firap~i~~~~~~v~ 155 (184)
|+|+|++++.+ ++..++||+++++|.|+.-+ .++.-....... |-+ .+.|+.+.+.+-|+..+...+ + .
T Consensus 80 G~Qll~~~~~~--~~~~~glg~~~~~v~~~~~~~~~~~g~~~~~~~~~~~l~---~~l~~~~~v~~~Hs~~v~~~~-~-~ 152 (196)
T TIGR01855 80 GMQLLFERSEE--GGGVPGLGLIKGNVVKLEARKVPHMGWNEVHPVKESPLL---NGIDEGAYFYFVHSYYAVCEE-E-A 152 (196)
T ss_pred HHHHhhhcccc--CCCCCCcceeeEEEEECCCCCCCcccCeeeeeCCCChHH---hCCCCCCEEEEECeeEecCCC-C-c
Confidence 99999999744 45788999999999987422 111111111000 101 234567889999998886544 4 3
Q ss_pred EEEecC
Q 030035 156 VLADYP 161 (184)
Q Consensus 156 vLa~~~ 161 (184)
++|..+
T Consensus 153 ~~a~~~ 158 (196)
T TIGR01855 153 VLAYAD 158 (196)
T ss_pred EEEEEc
Confidence 555544
No 24
>PRK05665 amidotransferase; Provisional
Probab=99.78 E-value=5.7e-18 Score=140.41 Aligned_cols=148 Identities=13% Similarity=0.131 Sum_probs=103.3
Q ss_pred CEEEEEec----------CCCHHHHH-HHHHHCCC--eEEEEc-----CCCCCCCCCEEEEcCCchhHHHHHHhcCChHH
Q 030035 1 MVVGVLAL----------QGSFNEHI-AALKRLGV--KGVEIR-----KPDQLQNVSSLIIPGGESTTMARLAEYHNLFP 62 (184)
Q Consensus 1 m~IgVl~~----------qG~~~~~~-~~L~~~G~--~v~~v~-----~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~ 62 (184)
|||+||.. .|+|.+++ +.|.+.+. ++..++ -+.+++++|++||+||....++...|...+.+
T Consensus 3 mki~IL~~~~~~~~~~~~~g~~~~~~~~ll~~~~~~~~~~~~~~~~~~~p~~~~~~dgiiitGs~~~v~~~~pwi~~l~~ 82 (240)
T PRK05665 3 LRICILETDVLRPELVAQYQGYGRMFEQLFARQPIAAEFVVYNVVQGDYPADDEKFDAYLVTGSKADSFGTDPWIQTLKT 82 (240)
T ss_pred eEEEEEECCCCCHHHHHHhCCHHHHHHHHHHhCCCCceEEEEeccCCCCCCCcccCCEEEECCCCCCccccchHHHHHHH
Confidence 78998842 26777744 55666664 344433 13456789999999997655543334334688
Q ss_pred HHHHHHHcCCcEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeee
Q 030035 63 ALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFI 142 (184)
Q Consensus 63 ~l~~~~~~g~PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~fi 142 (184)
+|++++++++|+||||+|+|+|+++++ ++|.|++.|.++.....++.- .-.|-...+..++....
T Consensus 83 ~i~~~~~~~~PilGIC~GhQlla~AlG--------------G~V~~~~~G~e~G~~~~~~~~-~~~~~~~~~~~~~~~~~ 147 (240)
T PRK05665 83 YLLKLYERGDKLLGVCFGHQLLALLLG--------------GKAERASQGWGVGIHRYQLAA-HAPWMSPAVTELTLLIS 147 (240)
T ss_pred HHHHHHhcCCCEEEEeHHHHHHHHHhC--------------CEEEeCCCCcccceEEEEecC-CCccccCCCCceEEEEE
Confidence 999999999999999999999999985 456666666555443332221 10122244567999999
Q ss_pred cCceEEecCCCcEEEEecCCC
Q 030035 143 RAPAVLDVGPDVDVLADYPVP 163 (184)
Q Consensus 143 rap~i~~~~~~v~vLa~~~~~ 163 (184)
|.+.|.++|+++++||+.++-
T Consensus 148 H~D~V~~LP~ga~~La~s~~~ 168 (240)
T PRK05665 148 HQDQVTALPEGATVIASSDFC 168 (240)
T ss_pred cCCeeeeCCCCcEEEEeCCCC
Confidence 999999999999999998764
No 25
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.77 E-value=2.3e-18 Score=142.46 Aligned_cols=147 Identities=25% Similarity=0.263 Sum_probs=101.1
Q ss_pred EEEEEec----------CCCHHHHH-HHHHHCCCeEEEEcCC-----CCCCCCCEEEEcCCchhHHHHHHhcCChHHHHH
Q 030035 2 VVGVLAL----------QGSFNEHI-AALKRLGVKGVEIRKP-----DQLQNVSSLIIPGGESTTMARLAEYHNLFPALR 65 (184)
Q Consensus 2 ~IgVl~~----------qG~~~~~~-~~L~~~G~~v~~v~~~-----~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~ 65 (184)
||+||.. .|+|.++. +.++..|.++.+++.. .++.++|++||+||..+.++...+...+.++|+
T Consensus 3 ~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~ 82 (237)
T PRK09065 3 PLLIIQTGTPPPSIRARYGDFPHWIRVALGLAEQPVVVVRVFAGEPLPAPDDFAGVIITGSWAMVTDRLDWSERTADWLR 82 (237)
T ss_pred cEEEEECCCCChhHHhhcCCHHHHHHHHhccCCceEEEEeccCCCCCCChhhcCEEEEeCCCcccCCCchhHHHHHHHHH
Confidence 4888842 36677765 3566678877766422 245689999999997655443333233678899
Q ss_pred HHHHcCCcEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccc--cCCCCCcceeEeeec
Q 030035 66 EFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALA--SQEGGPETFRGVFIR 143 (184)
Q Consensus 66 ~~~~~g~PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~--~~~~~~~~~~a~fir 143 (184)
++++.++||||||+|+|+|+++++. +|.+|+.|.++...+..+...+.. +-.+.|+.|++.+.|
T Consensus 83 ~~~~~~~PvlGIC~G~Qlla~alGg--------------~V~~~~~g~e~G~~~v~~~~~~~~~~l~~~~~~~~~v~~~H 148 (237)
T PRK09065 83 QAAAAGMPLLGICYGHQLLAHALGG--------------EVGYNPAGRESGTVTVELHPAAADDPLFAGLPAQFPAHLTH 148 (237)
T ss_pred HHHHCCCCEEEEChhHHHHHHHcCC--------------ccccCCCCCccceEEEEEccccccChhhhcCCccCcEeeeh
Confidence 9999999999999999999999853 344555555544443332211100 002345678999999
Q ss_pred CceEEecCCCcEEEEecCC
Q 030035 144 APAVLDVGPDVDVLADYPV 162 (184)
Q Consensus 144 ap~i~~~~~~v~vLa~~~~ 162 (184)
.+.|.++|+++++||+.++
T Consensus 149 ~d~v~~lp~~~~~la~s~~ 167 (237)
T PRK09065 149 LQSVLRLPPGAVVLARSAQ 167 (237)
T ss_pred hhhhhhCCCCCEEEEcCCC
Confidence 9999999999999999875
No 26
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=99.75 E-value=1.2e-17 Score=134.06 Aligned_cols=105 Identities=25% Similarity=0.388 Sum_probs=86.7
Q ss_pred EEEEec--CCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHH--HHHHhcCChHHHHHHHHHcCCcEEEEc
Q 030035 3 VGVLAL--QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTM--ARLAEYHNLFPALREFVKMGKPVWGTC 78 (184)
Q Consensus 3 IgVl~~--qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~--~~l~~~~~l~~~l~~~~~~g~PvlGIC 78 (184)
|+|+.+ -||+.++.+++++.|+++++++..+++.++|+||||||.+... ..+. ..++.+.|++++++|+|++|||
T Consensus 1 ~~~~~y~~~gN~~~l~~~~~~~G~~~~~~~~~~~~~~~d~lilpGg~~~~~~~~~~~-~~~~~~~i~~~~~~g~pvlgiC 79 (194)
T cd01750 1 IAVIRYPDISNFTDLDPLAREPGVDVRYVEVPEGLGDADLIILPGSKDTIQDLAWLR-KRGLAEAIKNYARAGGPVLGIC 79 (194)
T ss_pred CEeecCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCCEEEECCCcchHHHHHHHH-HcCHHHHHHHHHHCCCcEEEEC
Confidence 345555 5899999999999999999999888888999999999975442 2222 3468899999999999999999
Q ss_pred hHHHHHHHhhhcccCCC----ccccCcceeeeee
Q 030035 79 AGLIFLANKAVGQKLGG----QELVGGLDCTVHR 108 (184)
Q Consensus 79 ~G~QlLa~~~~~~~~~~----~~~LG~ldv~v~r 108 (184)
+|+|+|++.+.+..+.+ .++||++|++++.
T Consensus 80 ~G~qlL~~~~~~~~g~~~~~~~~glGll~~~~~~ 113 (194)
T cd01750 80 GGYQMLGKYIVDPEGVEGPGEIEGLGLLDVETEF 113 (194)
T ss_pred HHHHHhhhhccCCCCcccCCCcccccccceEEEe
Confidence 99999999997643333 7899999999874
No 27
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.74 E-value=2.5e-17 Score=130.84 Aligned_cols=148 Identities=23% Similarity=0.268 Sum_probs=102.5
Q ss_pred EEEEEecCCC--HHHHHHHHHHCC---CeEEEEcCC-----CCCCCCCEEEEcCCchhH-HHHHHhcCChHHHHHHHHHc
Q 030035 2 VVGVLALQGS--FNEHIAALKRLG---VKGVEIRKP-----DQLQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKM 70 (184)
Q Consensus 2 ~IgVl~~qG~--~~~~~~~L~~~G---~~v~~v~~~-----~~l~~~DglIipGG~~~~-~~~l~~~~~l~~~l~~~~~~ 70 (184)
||.||...-. ...+.+.|+++| +++..++.. .+++++|++|||||..+. .+...+...+.+.|++++++
T Consensus 1 ~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~ 80 (188)
T cd01741 1 RILILQHDTPEGPGLFEDLLREAGAETIEIDVVDVYAGELLPDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAA 80 (188)
T ss_pred CEEEEECCCCCCcchHHHHHHhcCCCCceEEEEecCCCCCCCCcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHC
Confidence 4666644332 245667788888 577666422 347899999999997544 22222222367889999999
Q ss_pred CCcEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccccC--CCCCcceeEeeecCceEE
Q 030035 71 GKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQ--EGGPETFRGVFIRAPAVL 148 (184)
Q Consensus 71 g~PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~--~~~~~~~~a~firap~i~ 148 (184)
++|++|||+|+|+|+.++. ++|.|+..|.+....+..+.-...... .+.+..+.+.+.|.+.|.
T Consensus 81 ~~pilgiC~G~q~l~~~lG--------------G~v~~~~~~~~~g~~~v~~~~~~~~~~l~~~~~~~~~v~~~H~~~v~ 146 (188)
T cd01741 81 GKPVLGICLGHQLLARALG--------------GKVGRNPKGWEIGWFPVTLTEAGKADPLFAGLPDEFPVFHWHGDTVV 146 (188)
T ss_pred CCCEEEECccHHHHHHHhC--------------CEEecCCCcceeEEEEEEeccccccCchhhcCCCcceEEEEeccChh
Confidence 9999999999999999873 467777766666665554332111000 134567999999999999
Q ss_pred ecCCCcEEEEecCCC
Q 030035 149 DVGPDVDVLADYPVP 163 (184)
Q Consensus 149 ~~~~~v~vLa~~~~~ 163 (184)
++|+++++||+.++-
T Consensus 147 ~lp~~~~~la~~~~~ 161 (188)
T cd01741 147 ELPPGAVLLASSEAC 161 (188)
T ss_pred hCCCCCEEeecCCCC
Confidence 999999999997653
No 28
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.72 E-value=5.5e-17 Score=131.00 Aligned_cols=145 Identities=23% Similarity=0.304 Sum_probs=99.2
Q ss_pred CEEEEEecCCCHHHHH-HHHHHCC-CeEEEEc---CCCCC--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCc
Q 030035 1 MVVGVLALQGSFNEHI-AALKRLG-VKGVEIR---KPDQL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKP 73 (184)
Q Consensus 1 m~IgVl~~qG~~~~~~-~~L~~~G-~~v~~v~---~~~~l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~P 73 (184)
++|.|+.+.+++...+ +++++.| +...++. +.+.+ .+.|++||+||..+.++.-.+.....++|+++...++|
T Consensus 2 ~~ilIld~g~q~~~li~r~~re~g~v~~e~~~~~~~~~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~p 81 (198)
T COG0518 2 RKILILDFGGQYLGLIARRLRELGYVYSEIVPYTGDAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKP 81 (198)
T ss_pred cEEEEEeCCCcHhHHHHHHHHHcCCceEEEEeCCCCcccccccCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCCC
Confidence 3799999999998866 8899999 5444443 22333 35699999999865543321222367788888777888
Q ss_pred EEEEchHHHHHHHhhhcccCCCccccCcceeeeeec---ccCceeEEeeccccCCccccCCCCCcce-eEeeecCceEEe
Q 030035 74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN---FFGSQIQSFEAELSVPALASQEGGPETF-RGVFIRAPAVLD 149 (184)
Q Consensus 74 vlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn---~~Grqv~sf~~~~~~~~~~~~~~~~~~~-~a~firap~i~~ 149 (184)
|||||+|||+||++++. +|.|+ .||...-+....-+ +-+ .+.|..+ .++.+|.+.+++
T Consensus 82 vLGIC~G~Ql~A~~lGg--------------~V~~~~~~E~G~~~v~~~~~~~-~l~---~gl~~~~~~v~~sH~D~v~~ 143 (198)
T COG0518 82 VLGICLGHQLLAKALGG--------------KVERGPKREIGWTPVELTEGDD-PLF---AGLPDLFTTVFMSHGDTVVE 143 (198)
T ss_pred EEEEChhHHHHHHHhCC--------------EEeccCCCccceEEEEEecCcc-ccc---cCCccccCccccchhCcccc
Confidence 99999999999999863 44443 33333222221000 011 2334455 589999999999
Q ss_pred cCCCcEEEEecCCC
Q 030035 150 VGPDVDVLADYPVP 163 (184)
Q Consensus 150 ~~~~v~vLa~~~~~ 163 (184)
+|++.++||+.++-
T Consensus 144 lP~g~~vlA~s~~c 157 (198)
T COG0518 144 LPEGAVVLASSETC 157 (198)
T ss_pred CCCCCEEEecCCCC
Confidence 99999999997764
No 29
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=99.69 E-value=3.2e-16 Score=134.11 Aligned_cols=136 Identities=26% Similarity=0.400 Sum_probs=108.7
Q ss_pred EEEec-CCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcC-C-chhHHHHHHhcCChHHHHHHHHHcCCcEEEEchH
Q 030035 4 GVLAL-QGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG-G-ESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (184)
Q Consensus 4 gVl~~-qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipG-G-~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G 80 (184)
-+|.+ .||+.++.++|+.+|+++..++++.|+.++|.||+|| | +...++.|.+ .++.+.|++++++|+|++|||.|
T Consensus 5 ~~ld~~agn~~si~nal~hlg~~i~~v~~P~DI~~a~rLIfPGVGnfg~~~D~L~~-~Gf~eplr~YiesgkPfmgicvG 83 (541)
T KOG0623|consen 5 TLLDYGAGNVRSIRNALRHLGFSIKDVQTPGDILNADRLIFPGVGNFGPAMDVLNR-TGFAEPLRKYIESGKPFMGICVG 83 (541)
T ss_pred EEEecCCccHHHHHHHHHhcCceeeeccCchhhccCceEeecCcccchHHHHHHhh-hhhHHHHHHHHhcCCCeEeehhh
Confidence 44544 6899999999999999999999999999999999999 6 5777877777 48999999999999999999999
Q ss_pred HHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeecc-ccCCccccCC----------CCCcceeEeeecCceEEe
Q 030035 81 LIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAE-LSVPALASQE----------GGPETFRGVFIRAPAVLD 149 (184)
Q Consensus 81 ~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~-~~~~~~~~~~----------~~~~~~~a~firap~i~~ 149 (184)
+|+|.....+ .+..++||++|..|.| |..+ -.+||+|||+ +.-..-+..|.|+-.+.+
T Consensus 84 lQaLF~gSvE--~p~skGLgvipg~v~R---------FD~s~k~VPhIGWNsc~v~sd~effg~~p~~~~YFVHSyl~~e 152 (541)
T KOG0623|consen 84 LQALFDGSVE--NPPSKGLGVIPGIVGR---------FDASAKIVPHIGWNSCQVGSDSEFFGDVPNRHVYFVHSYLNRE 152 (541)
T ss_pred HHHHhccccc--CCCcCcccccccceec---------ccCCCCcCCcccccccccCCcccccccCCCceEEEEeeecccc
Confidence 9999988764 4578899999876654 5542 3479999993 111123667888865555
Q ss_pred cC
Q 030035 150 VG 151 (184)
Q Consensus 150 ~~ 151 (184)
.+
T Consensus 153 k~ 154 (541)
T KOG0623|consen 153 KP 154 (541)
T ss_pred cc
Confidence 43
No 30
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.69 E-value=8.9e-16 Score=122.75 Aligned_cols=140 Identities=20% Similarity=0.291 Sum_probs=94.9
Q ss_pred CEEEEEecCCCHHH-HHHHHHHCCCeEEEEc----CCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIR----KPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (184)
Q Consensus 1 m~IgVl~~qG~~~~-~~~~L~~~G~~v~~v~----~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl 75 (184)
|||.|+...+.|.. +.++|+++|.++.+++ ++++++++|+|||.||.+.. .... .+.++|++ +++++|+|
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~l~~~d~iIi~gGp~~~-~~~~---~~~~~i~~-~~~~~PiL 76 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEVENFSHILISPGPDVP-RAYP---QLFAMLER-YHQHKSIL 76 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhHhccCCEEEECCCCCCh-HHhh---HHHHHHHH-hcCCCCEE
Confidence 79999998888766 5689999999998887 33456789999998886532 1111 24567776 56799999
Q ss_pred EEchHHHHHHHhhhcccCCCccccCcceeeeeec---ccCceeEEeeccccCCccccCCCCCcceeEeeecCceEE--ec
Q 030035 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN---FFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVL--DV 150 (184)
Q Consensus 76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn---~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~--~~ 150 (184)
|||+|||+|+.+++.. |.|+ ..|. .......-.-+-+ .+.|+++.+.+-|...+. ++
T Consensus 77 GIClG~Qlla~~~Gg~--------------V~~~~~~~~g~-~~~v~~~~~~~l~---~~~~~~~~v~~~Hs~~v~~~~l 138 (190)
T PRK06895 77 GVCLGHQTLCEFFGGE--------------LYNLNNVRHGQ-QRPLKVRSNSPLF---DGLPEEFNIGLYHSWAVSEENF 138 (190)
T ss_pred EEcHHHHHHHHHhCCe--------------EeecCCCccCc-eEEEEECCCChhh---hcCCCceEEEcchhheeccccc
Confidence 9999999999998532 2221 1121 1111100000111 134567888999999986 57
Q ss_pred CCCcEEEEecCCC
Q 030035 151 GPDVDVLADYPVP 163 (184)
Q Consensus 151 ~~~v~vLa~~~~~ 163 (184)
|++..++|.+++.
T Consensus 139 p~~l~~~a~~~~~ 151 (190)
T PRK06895 139 PTPLEITAVCDEN 151 (190)
T ss_pred CCCeEEEEECCCC
Confidence 8889999988654
No 31
>PRK00758 GMP synthase subunit A; Validated
Probab=99.68 E-value=4.3e-16 Score=123.73 Aligned_cols=134 Identities=24% Similarity=0.341 Sum_probs=91.1
Q ss_pred EEEEecCCCHHH-HHHHHHHCCCeEEEEc---CCCCCCCC-CEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEE
Q 030035 3 VGVLALQGSFNE-HIAALKRLGVKGVEIR---KPDQLQNV-SSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (184)
Q Consensus 3 IgVl~~qG~~~~-~~~~L~~~G~~v~~v~---~~~~l~~~-DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGI 77 (184)
|.|+...+.|.. +.++|+++|+++.+++ +++++.++ |+||||||.+ +... ..+.++|+ +.++|+|||
T Consensus 2 i~iid~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~l~~~~dgivi~Gg~~--~~~~---~~~~~~l~---~~~~PilGI 73 (184)
T PRK00758 2 IVVVDNGGQYNHLIHRTLRYLGVDAKIIPNTTPVEEIKAFEDGLILSGGPD--IERA---GNCPEYLK---ELDVPILGI 73 (184)
T ss_pred EEEEECCCchHHHHHHHHHHcCCcEEEEECCCCHHHHhhcCCEEEECCCCC--hhhc---cccHHHHH---hCCCCEEEE
Confidence 888888777665 5588999999988887 33456777 9999999973 2221 12344554 458999999
Q ss_pred chHHHHHHHhhhcccCCCccccCcceeeeeecc---cCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCCc
Q 030035 78 CAGLIFLANKAVGQKLGGQELVGGLDCTVHRNF---FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDV 154 (184)
Q Consensus 78 C~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~---~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~v 154 (184)
|+|||+|+.++.+ +|.|+. +|.....+... + +-+ .+.|.++++.+.|++.+.++|++.
T Consensus 74 C~G~Q~L~~a~Gg--------------~v~~~~~~~~g~~~i~~~~~-~-~l~---~~~~~~~~~~~~H~~~v~~l~~~~ 134 (184)
T PRK00758 74 CLGHQLIAKAFGG--------------EVGRGEYGEYALVEVEILDE-D-DIL---KGLPPEIRVWASHADEVKELPDGF 134 (184)
T ss_pred eHHHHHHHHhcCc--------------EEecCCCceeeeEEEEEcCC-C-hhh---hCCCCCcEEEeehhhhhhhCCCCC
Confidence 9999999999853 232321 12111111110 0 111 134457899999999999999999
Q ss_pred EEEEecCCC
Q 030035 155 DVLADYPVP 163 (184)
Q Consensus 155 ~vLa~~~~~ 163 (184)
++||+.++-
T Consensus 135 ~~la~~~~~ 143 (184)
T PRK00758 135 EILARSDIC 143 (184)
T ss_pred EEEEECCCC
Confidence 999997763
No 32
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.68 E-value=6.4e-17 Score=145.51 Aligned_cols=101 Identities=25% Similarity=0.388 Sum_probs=74.2
Q ss_pred CEEEEEecCCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchH
Q 030035 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (184)
Q Consensus 1 m~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G 80 (184)
||||||++||.+.+ ++.+.....+++.++++++|.++|+||||||..+....+. .++.+.|+++ |+||||||+|
T Consensus 1 m~iGvlal~sv~~a-l~~lg~~~~~vv~~~~~~~l~~~D~lILPGG~~~~~~~l~--~~l~~~i~~~---g~pvlGICgG 74 (476)
T PRK06278 1 MEIGLLDIKGSLPC-FENFGNLPTKIIDENNIKEIKDLDGLIIPGGSLVESGSLT--DELKKEILNF---DGYIIGICSG 74 (476)
T ss_pred CEEEEEehhhHHHH-HHHhcCCCcEEEEeCChHHhccCCEEEECCCchhhcchHH--HHHHHHHHHc---CCeEEEEcHH
Confidence 89999999999876 3334333345555778888999999999999644332232 2466666665 8999999999
Q ss_pred HHHHHHhhhcccC----CCccccCcceeeee
Q 030035 81 LIFLANKAVGQKL----GGQELVGGLDCTVH 107 (184)
Q Consensus 81 ~QlLa~~~~~~~~----~~~~~LG~ldv~v~ 107 (184)
||||++.+.+... +..++||++|++..
T Consensus 75 ~QmLg~~~~eg~e~~~~~~~~GLGll~~~~~ 105 (476)
T PRK06278 75 FQILSEKIDIGRKSPVPIIKEGLGLLDVEFS 105 (476)
T ss_pred HHhcccccccCcccccccccCccceeeeeec
Confidence 9999999864211 23789999998743
No 33
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.68 E-value=6.9e-16 Score=127.87 Aligned_cols=144 Identities=17% Similarity=0.091 Sum_probs=92.5
Q ss_pred CEEEEEecC--CCHHHHHHHHHHCCCeEEEEcC------CCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCC
Q 030035 1 MVVGVLALQ--GSFNEHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGK 72 (184)
Q Consensus 1 m~IgVl~~q--G~~~~~~~~L~~~G~~v~~v~~------~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~ 72 (184)
|||-|+.-. ++...+.+.|++.|.++.+++. +++++++|++||.||..+.++...+...+.++|+++++.++
T Consensus 8 ~~vlvi~h~~~~~~g~l~~~l~~~g~~~~v~~~~~~~~~p~~l~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~ 87 (239)
T PRK06490 8 RPVLIVLHQERSTPGRVGQLLQERGYPLDIRRPRLGDPLPDTLEDHAGAVIFGGPMSANDPDDFIRREIDWISVPLKENK 87 (239)
T ss_pred ceEEEEecCCCCCChHHHHHHHHCCCceEEEeccCCCCCCCcccccCEEEEECCCCCCCCCchHHHHHHHHHHHHHHCCC
Confidence 577776432 3455567889999998887752 33577899999999975443222222235788999999999
Q ss_pred cEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecccCc-eeEEeeccccCCccccCCCCCcceeEeeecCceEEecC
Q 030035 73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGS-QIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG 151 (184)
Q Consensus 73 PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Gr-qv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~ 151 (184)
|+||||+|+|+|+++++. +|.++..|. +++..+..+.-.+. +-... +....+.|... .++|
T Consensus 88 PvLGIC~G~Qlla~alGG--------------~V~~~~~G~~e~G~~~i~~~~~~~-~~~~~--~~~~~~~H~d~-~~lP 149 (239)
T PRK06490 88 PFLGICLGAQMLARHLGA--------------RVAPHPDGRVEIGYYPLRPTEAGR-ALMHW--PEMVYHWHREG-FDLP 149 (239)
T ss_pred CEEEECHhHHHHHHHcCC--------------EeecCCCCCCccceEEeEECCCcc-cccCC--CCEEEEECCcc-ccCC
Confidence 999999999999999853 334433332 22222211111000 00011 23456678888 7899
Q ss_pred CCcEEEEecCC
Q 030035 152 PDVDVLADYPV 162 (184)
Q Consensus 152 ~~v~vLa~~~~ 162 (184)
++.++||+.++
T Consensus 150 ~~~~~LA~s~~ 160 (239)
T PRK06490 150 AGAELLATGDD 160 (239)
T ss_pred CCCEEEEeCCC
Confidence 99999999765
No 34
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.68 E-value=1.5e-15 Score=136.14 Aligned_cols=117 Identities=21% Similarity=0.336 Sum_probs=95.6
Q ss_pred EEEEEe---cCCCHHHHHHHHHHCCCeEEEEcC--CCCCCCCCEEEEcCCchhHH-HHHHhcCChHHHHHHHHHcCCcEE
Q 030035 2 VVGVLA---LQGSFNEHIAALKRLGVKGVEIRK--PDQLQNVSSLIIPGGESTTM-ARLAEYHNLFPALREFVKMGKPVW 75 (184)
Q Consensus 2 ~IgVl~---~qG~~~~~~~~L~~~G~~v~~v~~--~~~l~~~DglIipGG~~~~~-~~l~~~~~l~~~l~~~~~~g~Pvl 75 (184)
||||.- +.-.|.++++.|++.|++++.++. .+++.++|+||||||+++.+ ..+..+..+.+.|+++.++|+||+
T Consensus 247 ~iava~d~af~f~y~e~~~~L~~~g~~~~~~~~~~~~~l~~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~~i~ 326 (451)
T PRK01077 247 RIAVARDAAFNFYYPENLELLRAAGAELVFFSPLADEALPDCDGLYLGGGYPELFAAELAANTSMRASIRAAAAAGKPIY 326 (451)
T ss_pred eEEEEecCcccccHHHHHHHHHHCCCEEEEeCCcCCCCCCCCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHHcCCCEE
Confidence 688864 444678899999999999999985 35588999999999998654 556666788999999999999999
Q ss_pred EEchHHHHHHHhhhcccCCCccccCcceeeeee----cccCceeEEe
Q 030035 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHR----NFFGSQIQSF 118 (184)
Q Consensus 76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~r----n~~Grqv~sf 118 (184)
|||+|+|+|++.+.++.+...+++|+||+++.. +.+|.....+
T Consensus 327 aiCgG~~~L~~~i~d~~g~~~~~lGll~~~t~~~~~~~~~g~~~~~~ 373 (451)
T PRK01077 327 AECGGLMYLGESLEDADGERHPMVGLLPGEASMTKRLQALGYREAEA 373 (451)
T ss_pred EEcHHHHHHHhhhcCCCCCeeecccccceeEEEcCCcccccceEEEe
Confidence 999999999999987655567999999998753 4666554444
No 35
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.67 E-value=9.8e-16 Score=120.91 Aligned_cols=136 Identities=21% Similarity=0.320 Sum_probs=88.7
Q ss_pred EEEEecC-CCHHHHHHHHHHCCCeEEEEcCCC-----CCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEE
Q 030035 3 VGVLALQ-GSFNEHIAALKRLGVKGVEIRKPD-----QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (184)
Q Consensus 3 IgVl~~q-G~~~~~~~~L~~~G~~v~~v~~~~-----~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlG 76 (184)
|.|+.+- ++...+.++|+++|+++++++... ++.++|+||||||....++.- .....++..+.++|+||
T Consensus 1 i~~iD~g~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dgvIl~Gg~~~~~~~~-----~~~~~~~~~~~~~PilG 75 (181)
T cd01742 1 ILILDFGSQYTHLIARRVRELGVYSEILPNTTPLEEIKLKNPKGIILSGGPSSVYEED-----APRVDPEIFELGVPVLG 75 (181)
T ss_pred CEEEECCCchHHHHHHHHHhcCceEEEecCCCChhhhcccCCCEEEECCCcccccccc-----cchhhHHHHhcCCCEEE
Confidence 3555553 345567899999999998886432 467899999999975443211 11223444456999999
Q ss_pred EchHHHHHHHhhhcccCCCccccCcceeeeeec---ccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCC
Q 030035 77 TCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN---FFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPD 153 (184)
Q Consensus 77 IC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn---~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~ 153 (184)
||+|||+|+.++.. ++.++ .+|..--.+... -+-+ .+.|.++.+.+.|.+.|.++|++
T Consensus 76 IC~G~Qll~~~~gg--------------~v~~~~~~~~G~~~v~~~~~--~~l~---~~~~~~~~~~~~H~~~v~~l~~~ 136 (181)
T cd01742 76 ICYGMQLIAKALGG--------------KVERGDKREYGKAEIEIDDS--SPLF---EGLPDEQTVWMSHGDEVVKLPEG 136 (181)
T ss_pred EcHHHHHHHHhcCC--------------eEEeCCCCcceEEEEEecCC--Chhh---cCCCCceEEEcchhhhhhhcCCC
Confidence 99999999998753 22222 112111111110 0111 13345789999999999999999
Q ss_pred cEEEEecCC
Q 030035 154 VDVLADYPV 162 (184)
Q Consensus 154 v~vLa~~~~ 162 (184)
+++||+.++
T Consensus 137 ~~~la~~~~ 145 (181)
T cd01742 137 FKVIASSDN 145 (181)
T ss_pred cEEEEeCCC
Confidence 999998775
No 36
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.66 E-value=8.5e-16 Score=122.42 Aligned_cols=139 Identities=21% Similarity=0.278 Sum_probs=92.5
Q ss_pred EEEEec-CCCHHHHHHHHHHCCCeEEEEcC---CCCCCCCC--EEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEE
Q 030035 3 VGVLAL-QGSFNEHIAALKRLGVKGVEIRK---PDQLQNVS--SLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (184)
Q Consensus 3 IgVl~~-qG~~~~~~~~L~~~G~~v~~v~~---~~~l~~~D--glIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlG 76 (184)
|+|+.+ .++...+.++|++.|+++.+++. ++++.++| +||||||....+.. ...++++++++.++|+||
T Consensus 1 i~iiD~g~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~glii~Gg~~~~~~~-----~~~~~i~~~~~~~~PilG 75 (188)
T TIGR00888 1 ILVLDFGSQYTQLIARRLRELGVYSELVPNTTPLEEIREKNPKGIILSGGPSSVYAE-----NAPRADEKIFELGVPVLG 75 (188)
T ss_pred CEEEECCchHHHHHHHHHHHcCCEEEEEeCCCCHHHHhhcCCCEEEECCCCCCcCcC-----CchHHHHHHHhCCCCEEE
Confidence 355655 34566678999999999988753 24455444 99999997654321 235678888889999999
Q ss_pred EchHHHHHHHhhhcccCC-CccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCCcE
Q 030035 77 TCAGLIFLANKAVGQKLG-GQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVD 155 (184)
Q Consensus 77 IC~G~QlLa~~~~~~~~~-~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~v~ 155 (184)
||+|||+|+.++++.-.. .....|+.++++. .. . +-+ .+.++++...+.|...+.++|++++
T Consensus 76 IC~G~Qll~~~lgg~v~~~~~~~~g~~~v~~~------------~~-~-~l~---~~~~~~~~~~~~H~~~v~~l~~~~~ 138 (188)
T TIGR00888 76 ICYGMQLMAKQLGGEVGRAEKREYGKAELEIL------------DE-D-DLF---RGLPDESTVWMSHGDKVKELPEGFK 138 (188)
T ss_pred ECHHHHHHHHhcCceEecCCCccceeEEEEEe------------cC-C-Hhh---cCCCCCcEEEeEccceeecCCCCCE
Confidence 999999999987532110 1112222222211 10 0 111 1234578888999999999999999
Q ss_pred EEEecCCC
Q 030035 156 VLADYPVP 163 (184)
Q Consensus 156 vLa~~~~~ 163 (184)
+||+.++.
T Consensus 139 vla~~~~~ 146 (188)
T TIGR00888 139 VLATSDNC 146 (188)
T ss_pred EEEECCCC
Confidence 99997753
No 37
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.66 E-value=4.5e-16 Score=129.17 Aligned_cols=135 Identities=26% Similarity=0.313 Sum_probs=85.3
Q ss_pred HHHHHHHHCCCe---EEEEc--C----CCCCCCCCEEEEcCCchhHH-------HHHHhc-CChHHHHHHHHHcCCcEEE
Q 030035 14 EHIAALKRLGVK---GVEIR--K----PDQLQNVSSLIIPGGESTTM-------ARLAEY-HNLFPALREFVKMGKPVWG 76 (184)
Q Consensus 14 ~~~~~L~~~G~~---v~~v~--~----~~~l~~~DglIipGG~~~~~-------~~l~~~-~~l~~~l~~~~~~g~PvlG 76 (184)
++.+++++.|.. +.+++ . +.+++++|++||+||..+.+ .++... ..+.+.++.+++.++||||
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLG 98 (242)
T PRK07567 19 EYAAFLRYTGLDPAELRRIRLDREPLPDLDLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLG 98 (242)
T ss_pred hHHHHHHhcCCCccceEEEecccCCCCCCCHhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 345667777754 44443 1 12567899999999964332 222211 0123455555688999999
Q ss_pred EchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCccc--cCCCCCcceeEeeecCceEEecCCCc
Q 030035 77 TCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALA--SQEGGPETFRGVFIRAPAVLDVGPDV 154 (184)
Q Consensus 77 IC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~--~~~~~~~~~~a~firap~i~~~~~~v 154 (184)
||+|||+|+++++. +|.+ ..|.+++.++..+...+.. +-.+.|..|.+.+.|.+.|.++|+++
T Consensus 99 IC~G~Qlla~a~GG--------------~V~~-~~g~e~G~~~v~l~~~g~~~~l~~~~~~~~~~~~~H~d~V~~lp~~~ 163 (242)
T PRK07567 99 ACYGVGTLGHHQGG--------------VVDR-TYGEPVGAVTVSLTDAGRADPLLAGLPDTFTAFVGHKEAVSALPPGA 163 (242)
T ss_pred EchhHHHHHHHcCC--------------EEec-CCCCcCccEEEEECCccCCChhhcCCCCceEEEeehhhhhhhCCCCC
Confidence 99999999999853 3334 3344444444333211110 00134567899999999999999999
Q ss_pred EEEEecCCC
Q 030035 155 DVLADYPVP 163 (184)
Q Consensus 155 ~vLa~~~~~ 163 (184)
++||+.++-
T Consensus 164 ~vlA~s~~~ 172 (242)
T PRK07567 164 VLLATSPTC 172 (242)
T ss_pred EEEEeCCCC
Confidence 999998753
No 38
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.65 E-value=2e-15 Score=124.70 Aligned_cols=136 Identities=18% Similarity=0.198 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHCCCeEEEEcC------CCCCCCCCEEEEcCCchhHHHH--HHhcCChHHHHHHHHHcCCcEEEEchHHH
Q 030035 11 SFNEHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGESTTMAR--LAEYHNLFPALREFVKMGKPVWGTCAGLI 82 (184)
Q Consensus 11 ~~~~~~~~L~~~G~~v~~v~~------~~~l~~~DglIipGG~~~~~~~--l~~~~~l~~~l~~~~~~g~PvlGIC~G~Q 82 (184)
+...+.+.|++.|.++.+++. +.++.++|+|||+||....++. ..+...+.++|+++++.++|++|||+|+|
T Consensus 15 ~~g~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Q 94 (234)
T PRK07053 15 DLGSFEQVLGARGYRVRYVDVGVDDLETLDALEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQRLAAGLPTLGICLGAQ 94 (234)
T ss_pred CChHHHHHHHHCCCeEEEEecCCCccCCCCccCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHCCCCEEEECccHH
Confidence 455577889999998888753 2345689999999986433221 11111357889999999999999999999
Q ss_pred HHHHhhhcccC-CCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCCCcEEEEecC
Q 030035 83 FLANKAVGQKL-GGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGPDVDVLADYP 161 (184)
Q Consensus 83 lLa~~~~~~~~-~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~~v~vLa~~~ 161 (184)
+|+++++..-. +....+|+.+++++.. |+ .-|-. +.+..++....|...+ ++|++.++||+.+
T Consensus 95 lla~alGg~V~~~~~~e~G~~~i~~t~~--g~---------~~pl~----~~~~~~~~~~~H~d~~-~lP~ga~~La~s~ 158 (234)
T PRK07053 95 LIARALGARVYPGGQKEIGWAPLTLTDA--GR---------ASPLR----HLGAGTPVLHWHGDTF-DLPEGATLLASTP 158 (234)
T ss_pred HHHHHcCCcEecCCCCeEeEEEEEEecc--cc---------CChhh----cCCCcceEEEEeCCEE-ecCCCCEEEEcCC
Confidence 99999864321 1223455554443321 10 00111 1224578888899987 7999999999977
Q ss_pred C
Q 030035 162 V 162 (184)
Q Consensus 162 ~ 162 (184)
.
T Consensus 159 ~ 159 (234)
T PRK07053 159 A 159 (234)
T ss_pred C
Confidence 5
No 39
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=99.65 E-value=1.4e-15 Score=136.28 Aligned_cols=106 Identities=22% Similarity=0.365 Sum_probs=88.3
Q ss_pred EEEEEec---CCCHHHHHHHHHHCCCeEEEEcCC--CCCCCCCEEEEcCCchhHHH-HHHhcCChHHHHHHHHHcCCcEE
Q 030035 2 VVGVLAL---QGSFNEHIAALKRLGVKGVEIRKP--DQLQNVSSLIIPGGESTTMA-RLAEYHNLFPALREFVKMGKPVW 75 (184)
Q Consensus 2 ~IgVl~~---qG~~~~~~~~L~~~G~~v~~v~~~--~~l~~~DglIipGG~~~~~~-~l~~~~~l~~~l~~~~~~g~Pvl 75 (184)
||+|... .-.|.++++.|++.|++++.++.. ++++++|+|+||||+++.+. .+..+.++.+.|++++++|+||+
T Consensus 246 ~Iava~d~afnFy~~~~~~~L~~~g~~~~~~~~~~d~~l~~~d~l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~G~pv~ 325 (449)
T TIGR00379 246 RIAVAQDQAFNFYYQDNLDALTHNAAELVPFSPLEDTELPDVDAVYIGGGFPELFAEELSQNQALRDSIKTFIHQGLPIY 325 (449)
T ss_pred EEEEEechhhceeHHHHHHHHHHCCCEEEEECCccCCCCCCCCEEEeCCcHHHHHHHHHHhhhHHHHHHHHHHHcCCCEE
Confidence 6888643 334578999999999999999874 56889999999999988764 45555678999999999999999
Q ss_pred EEchHHHHHHHhhhcccCCCccccCcceeeeee
Q 030035 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHR 108 (184)
Q Consensus 76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~r 108 (184)
|||.|+|+|++.+.+.++ ..+++|+||+++..
T Consensus 326 g~CgG~~~L~~~i~~~~g-~~~~~Gllp~~t~~ 357 (449)
T TIGR00379 326 GECGGLMYLSQSLDNFEG-QIFMVGMLPTAATM 357 (449)
T ss_pred EEcHHHHHHHhhhcCCCC-ceeceeeeeeEEEE
Confidence 999999999999976443 34999999997764
No 40
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.64 E-value=9.4e-15 Score=119.21 Aligned_cols=139 Identities=22% Similarity=0.281 Sum_probs=96.1
Q ss_pred CEEEEEecCCCHHH-HHHHHHHCCCeEEEEcCCC----C----CCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcC
Q 030035 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----Q----LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG 71 (184)
Q Consensus 1 m~IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~~----~----l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g 71 (184)
|||.|+.....+.. +.+.|++.|+++.+++... + ++++|+|||+||..+.. +.. ...++++++.+++
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~-~~~---~~~~~i~~~~~~~ 76 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPE-RAG---ASIDMVRACAAAG 76 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChh-hcc---hHHHHHHHHHhCC
Confidence 88988888776655 4578999999998876321 1 34799999999975432 211 2357889988889
Q ss_pred CcEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecc---cCce-eEEeeccccCCccccCCCCCcceeEeeecCceE
Q 030035 72 KPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNF---FGSQ-IQSFEAELSVPALASQEGGPETFRGVFIRAPAV 147 (184)
Q Consensus 72 ~PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~---~Grq-v~sf~~~~~~~~~~~~~~~~~~~~a~firap~i 147 (184)
+||||||+|||+|+.+++. +|.++. .|.. ......+ +.+ .+.+..+.+.+.|...+
T Consensus 77 ~PiLGIC~G~Qlla~a~GG--------------~v~~~~~~~~g~~~~v~~~~~---~~~---~~~~~~~~v~~~H~~~v 136 (214)
T PRK07765 77 TPLLGVCLGHQAIGVAFGA--------------TVDRAPELLHGKTSSVHHTGV---GVL---AGLPDPFTATRYHSLTI 136 (214)
T ss_pred CCEEEEccCHHHHHHHhCC--------------EEeeCCCCccCceeEEEECCC---ccc---cCCCCccEEEecchheE
Confidence 9999999999999999863 333322 1221 1111111 011 13345789999999999
Q ss_pred E--ecCCCcEEEEecCCC
Q 030035 148 L--DVGPDVDVLADYPVP 163 (184)
Q Consensus 148 ~--~~~~~v~vLa~~~~~ 163 (184)
. ++|++.+++|+.++-
T Consensus 137 ~~~~lp~~~~vla~s~~~ 154 (214)
T PRK07765 137 LPETLPAELEVTARTDSG 154 (214)
T ss_pred ecccCCCceEEEEEcCCC
Confidence 6 789999999998654
No 41
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.61 E-value=3.4e-15 Score=121.51 Aligned_cols=106 Identities=28% Similarity=0.450 Sum_probs=82.1
Q ss_pred CEEEEEecCCCHHH--HHHHHHHCCCeEEEEcCCC-CCC-CCCEEEEcCCchhH--H--HHHHhcCChHHHHHHHHHcCC
Q 030035 1 MVVGVLALQGSFNE--HIAALKRLGVKGVEIRKPD-QLQ-NVSSLIIPGGESTT--M--ARLAEYHNLFPALREFVKMGK 72 (184)
Q Consensus 1 m~IgVl~~qG~~~~--~~~~L~~~G~~v~~v~~~~-~l~-~~DglIipGG~~~~--~--~~l~~~~~l~~~l~~~~~~g~ 72 (184)
|||+||.+||...+ ...+++++|.++..|.-.+ .+. ++|++++|||+|.. + ..+.....+.+.++++++.|+
T Consensus 3 ~kvaVi~fpGtN~d~d~~~A~~~aG~~~~~V~~~d~~~~~~~d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~a~~g~ 82 (231)
T COG0047 3 PKVAVLRFPGTNCDYDMAAAFERAGFEAEDVWHSDLLLGRDFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREFAEKGK 82 (231)
T ss_pred ceEEEEEcCCcCchHHHHHHHHHcCCCceEEEeeecccCCCccEEEEcCCCCcccccCcchHHhhHHHHHHHHHHHHCCC
Confidence 79999999997655 6789999999998886433 355 79999999997632 1 223333347888999999999
Q ss_pred cEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEe
Q 030035 73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSF 118 (184)
Q Consensus 73 PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf 118 (184)
|+||||.|+|+|.++ |+++.+..||.-.+-+...
T Consensus 83 ~vLGICNGfQiL~e~------------gLlPGal~~N~s~~F~cr~ 116 (231)
T COG0047 83 PVLGICNGFQILSEA------------GLLPGALTRNESLRFECRW 116 (231)
T ss_pred eEEEEcchhHHHHHc------------CcCCcceecCCCCceEEEE
Confidence 999999999999853 6788899999766544443
No 42
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.61 E-value=1.4e-14 Score=119.78 Aligned_cols=147 Identities=17% Similarity=0.173 Sum_probs=91.2
Q ss_pred CEEEEEecCC--CHHHHHHHHHHCCCeEEEEcC------CCCCCCCCEEEEcCCchhHHH---HHHhc--CChHHHHHHH
Q 030035 1 MVVGVLALQG--SFNEHIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGESTTMA---RLAEY--HNLFPALREF 67 (184)
Q Consensus 1 m~IgVl~~qG--~~~~~~~~L~~~G~~v~~v~~------~~~l~~~DglIipGG~~~~~~---~l~~~--~~l~~~l~~~ 67 (184)
|||.|+.-.. ....+...+++.|+++.+.+. +.+++++|++|++||...... ...+. ....++|+++
T Consensus 1 m~i~vi~h~~~e~~g~~~~~~~~~g~~~~~~~~~~g~~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~ 80 (235)
T PRK08250 1 MRVHFIIHESFEAPGAYLKWAENRGYDISYSRVYAGEALPENADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQA 80 (235)
T ss_pred CeEEEEecCCCCCchHHHHHHHHCCCeEEEEEccCCCCCCCCccccCEEEECCCCCChhhccccccccchHHHHHHHHHH
Confidence 8877764221 223355677889988876541 124568999999999644221 11111 1235789999
Q ss_pred HHcCCcEEEEchHHHHHHHhhhcccC-CCccccCcceeeeeecccCceeEEeeccccCCccccCCCCCcceeEeeecCce
Q 030035 68 VKMGKPVWGTCAGLIFLANKAVGQKL-GGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPA 146 (184)
Q Consensus 68 ~~~g~PvlGIC~G~QlLa~~~~~~~~-~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~ 146 (184)
++.++|++|||+|+|+|+++++..-. .....+|+.+++++.. |++ -|-+ .+.|+++.+...|...
T Consensus 81 ~~~~~PvlGIC~G~Qlla~alGg~V~~~~~~e~G~~~v~lt~~--g~~---------d~l~---~~~~~~~~v~~~H~d~ 146 (235)
T PRK08250 81 IKAGKAVIGVCLGAQLIGEALGAKYEHSPEKEIGYFPITLTEA--GLK---------DPLL---SHFGSTLTVGHWHNDM 146 (235)
T ss_pred HHcCCCEEEEChhHHHHHHHhCceeccCCCCceeEEEEEEccc--ccc---------Cchh---hcCCCCcEEEEEecce
Confidence 99999999999999999999864221 1123444444333211 110 0111 1234567777778875
Q ss_pred EEecCCCcEEEEecCC
Q 030035 147 VLDVGPDVDVLADYPV 162 (184)
Q Consensus 147 i~~~~~~v~vLa~~~~ 162 (184)
.++|+++++||+.+.
T Consensus 147 -~~lP~~a~~LA~s~~ 161 (235)
T PRK08250 147 -PGLTDQAKVLATSEG 161 (235)
T ss_pred -ecCCCCCEEEECCCC
Confidence 478999999998865
No 43
>PRK00784 cobyric acid synthase; Provisional
Probab=99.61 E-value=6.1e-15 Score=133.36 Aligned_cols=106 Identities=24% Similarity=0.348 Sum_probs=87.2
Q ss_pred EEEEEecC--CCHHHHHHHHHH-CCCeEEEEcCCCCCCCCCEEEEcCCchhHHH-HHHhcCChHHHHHHHHHcCCcEEEE
Q 030035 2 VVGVLALQ--GSFNEHIAALKR-LGVKGVEIRKPDQLQNVSSLIIPGGESTTMA-RLAEYHNLFPALREFVKMGKPVWGT 77 (184)
Q Consensus 2 ~IgVl~~q--G~~~~~~~~L~~-~G~~v~~v~~~~~l~~~DglIipGG~~~~~~-~l~~~~~l~~~l~~~~~~g~PvlGI 77 (184)
||+|..+. -|| +..+.|++ .|++++++++.++++++|+|+||||+++... .+.++.++.+.|++++++|+|++||
T Consensus 253 ~i~v~~~~~a~~f-~nl~~l~~~~g~~v~~~s~~~~l~~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~~g~pilg~ 331 (488)
T PRK00784 253 RIAVIRLPRISNF-TDFDPLRAEPGVDVRYVRPGEPLPDADLVILPGSKNTIADLAWLRESGWDEAIRAHARRGGPVLGI 331 (488)
T ss_pred EEEEEeCCCcCCc-cChHHHhhcCCCeEEEECCccccccCCEEEECCccchHHHHHHHHHcCHHHHHHHHHHcCCeEEEE
Confidence 78887744 366 67788988 9999999998888999999999999866543 3445567899999999999999999
Q ss_pred chHHHHHHHhhhcccCCC-----ccccCcceeeeee
Q 030035 78 CAGLIFLANKAVGQKLGG-----QELVGGLDCTVHR 108 (184)
Q Consensus 78 C~G~QlLa~~~~~~~~~~-----~~~LG~ldv~v~r 108 (184)
|.|+|+|++.+.+..+.. .+++|++|+++..
T Consensus 332 C~G~~~L~~~~~~~~G~~~~~~~~~glG~l~~~~~~ 367 (488)
T PRK00784 332 CGGYQMLGRRIADPDGVEGAPGSVEGLGLLDVETVF 367 (488)
T ss_pred CHHHHHHhhhccCCCCcccCCCCcCCCCceeeEEEe
Confidence 999999999996543322 4899999998864
No 44
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.60 E-value=9.9e-15 Score=132.69 Aligned_cols=138 Identities=20% Similarity=0.333 Sum_probs=95.0
Q ss_pred EEEEEecCCCHHH-HHHHHHHCCCeEEEEcC---CCCCCCC--CEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035 2 VVGVLALQGSFNE-HIAALKRLGVKGVEIRK---PDQLQNV--SSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (184)
Q Consensus 2 ~IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~---~~~l~~~--DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl 75 (184)
+|+||.+.++|.. +.++|+++|+...++.. .++++++ |+||||||..+.++.- .....+...+.++|||
T Consensus 5 ~i~vlD~Gsq~~~li~r~lrelg~~~~v~p~~~~~~~l~~~~~dgIIlsGGp~sv~~~~-----~p~~~~~i~~~~~PvL 79 (511)
T PRK00074 5 KILILDFGSQYTQLIARRVRELGVYSEIVPYDISAEEIRAFNPKGIILSGGPASVYEEG-----APRADPEIFELGVPVL 79 (511)
T ss_pred EEEEEECCCCcHHHHHHHHHHCCCeEEEEECCCCHHHHhccCCCEEEECCCCcccccCC-----CccccHHHHhCCCCEE
Confidence 6999999777776 45899999998877742 2345544 9999999987655321 1122344556799999
Q ss_pred EEchHHHHHHHhhhcccCCCccccCcceeeeeec---ccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecCC
Q 030035 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN---FFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVGP 152 (184)
Q Consensus 76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn---~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~~ 152 (184)
|||+|||+|++++++ +|.++ .||.+...+..+- +-+ .+.+..+..++.|++.|.++|+
T Consensus 80 GIC~G~QlLa~~lGG--------------~V~~~~~~e~G~~~i~i~~~~--~Lf---~~l~~~~~v~~~H~d~V~~lp~ 140 (511)
T PRK00074 80 GICYGMQLMAHQLGG--------------KVERAGKREYGRAELEVDNDS--PLF---KGLPEEQDVWMSHGDKVTELPE 140 (511)
T ss_pred EECHHHHHHHHHhCC--------------eEEecCCcccceEEEEEcCCC--hhh---hcCCCceEEEEECCeEEEecCC
Confidence 999999999999853 22222 3443333222110 111 1234568999999999999999
Q ss_pred CcEEEEecCCC
Q 030035 153 DVDVLADYPVP 163 (184)
Q Consensus 153 ~v~vLa~~~~~ 163 (184)
++++||+.++-
T Consensus 141 g~~vlA~s~~~ 151 (511)
T PRK00074 141 GFKVIASTENC 151 (511)
T ss_pred CcEEEEEeCCC
Confidence 99999998763
No 45
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=99.60 E-value=6.3e-15 Score=131.35 Aligned_cols=106 Identities=25% Similarity=0.320 Sum_probs=88.6
Q ss_pred EEEEE---ecCCCHHHHHHHHHHCCCeEEEEcC--CCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEE
Q 030035 2 VVGVL---ALQGSFNEHIAALKRLGVKGVEIRK--PDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (184)
Q Consensus 2 ~IgVl---~~qG~~~~~~~~L~~~G~~v~~v~~--~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlG 76 (184)
||||- ||.--|.+..+.|+++ ++++.++. .++++++|+|+||||+++.+.......+..+.|++++++|+||+|
T Consensus 235 ~iavA~D~AF~FyY~enl~~L~~~-aelv~fSPl~~~~lp~~D~l~lpGG~~e~~~~~L~~n~~~~~i~~~~~~G~pi~a 313 (433)
T PRK13896 235 TVAVARDAAFCFRYPATIERLRER-ADVVTFSPVAGDPLPDCDGVYLPGGYPELHADALADSPALDELADRAADGLPVLG 313 (433)
T ss_pred eEEEEEcCccceeCHHHHHHHHhc-CcEEEEcCCCCCCCCCCCEEEeCCCchhhHHHHHHhCCcHHHHHHHHHCCCcEEE
Confidence 68874 4566789999999999 99999986 455889999999999987764433334566999999999999999
Q ss_pred EchHHHHHHHhhhcccCCCccccCcceeeeee
Q 030035 77 TCAGLIFLANKAVGQKLGGQELVGGLDCTVHR 108 (184)
Q Consensus 77 IC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~r 108 (184)
+|.|+|+|++.+.+.++...+++|++|+++..
T Consensus 314 eCGG~q~L~~~i~d~eG~~~~m~Gllp~~t~m 345 (433)
T PRK13896 314 ECGGLMALAESLTTTDGDTHEMAGVLPADVTM 345 (433)
T ss_pred EehHHHHhhccccCCCCCEecccceeeEEEEE
Confidence 99999999999987655678999999998864
No 46
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.60 E-value=3e-14 Score=113.05 Aligned_cols=136 Identities=19% Similarity=0.227 Sum_probs=92.0
Q ss_pred EEEEecCCCHHH-HHHHHHHCCCeEEEEcCCC------CCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035 3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKPD------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (184)
Q Consensus 3 IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~~------~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl 75 (184)
|-|+.+-++|.. +.+.|+++|+++.+++..+ ++.++|++|+.||..+..+. ...+.+++++.+++|+|
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~~~~~~~-----~~~~~i~~~~~~~~Pvl 75 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDA-----GISLEIIRALAGKVPIL 75 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHHHhhcCCCEEEECCCCCCcccc-----hhHHHHHHHHhcCCCEE
Confidence 456777888877 4588999999999886431 35789999998876543211 13445666667789999
Q ss_pred EEchHHHHHHHhhhcccCCCccccCcceeeeeec---ccCce-eEEeeccccCCccccCCCCCcceeEeeecCceEEecC
Q 030035 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN---FFGSQ-IQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG 151 (184)
Q Consensus 76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn---~~Grq-v~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~ 151 (184)
|||+|||+|+.+++. +|.++ ..|.. ......+ +-+ .+.++.+.+.+.|...|...+
T Consensus 76 GIC~G~Qlla~~~Gg--------------~v~~~~~~~~g~~~~v~~~~~---~~~---~~~~~~~~~~~~H~~~v~~~~ 135 (184)
T cd01743 76 GVCLGHQAIAEAFGG--------------KVVRAPEPMHGKTSEIHHDGS---GLF---KGLPQPFTVGRYHSLVVDPDP 135 (184)
T ss_pred EECHhHHHHHHHhCC--------------EEEeCCCCCcCceeEEEECCC---ccc---cCCCCCcEEEeCcEEEEecCC
Confidence 999999999999853 22222 22211 1111111 111 134457899999999999988
Q ss_pred CC--cEEEEecCCC
Q 030035 152 PD--VDVLADYPVP 163 (184)
Q Consensus 152 ~~--v~vLa~~~~~ 163 (184)
.+ +++||+.++-
T Consensus 136 ~~~~~~~la~~~~~ 149 (184)
T cd01743 136 LPDLLEVTASTEDG 149 (184)
T ss_pred CCceEEEEEeCCCC
Confidence 77 9999997654
No 47
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.59 E-value=1.8e-14 Score=117.89 Aligned_cols=101 Identities=32% Similarity=0.523 Sum_probs=78.7
Q ss_pred CEEEEEecCCCHH--HHHHHHH-HCCCeEEEEc-CCCCCCCCCEEEEcCCchhH--H--HHHHhcCChHHHHHHHHHcCC
Q 030035 1 MVVGVLALQGSFN--EHIAALK-RLGVKGVEIR-KPDQLQNVSSLIIPGGESTT--M--ARLAEYHNLFPALREFVKMGK 72 (184)
Q Consensus 1 m~IgVl~~qG~~~--~~~~~L~-~~G~~v~~v~-~~~~l~~~DglIipGG~~~~--~--~~l~~~~~l~~~l~~~~~~g~ 72 (184)
|||+||.++|... +..++|+ ..|+++..+. ...+++++|+||||||.+.. . ..+.....+.++|+++.++++
T Consensus 1 ~~v~Vl~~~G~n~~~d~~~a~~~~~G~~~~~v~~~~~~l~~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~ 80 (219)
T PRK03619 1 MKVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKETDLDGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGK 80 (219)
T ss_pred CEEEEEecCCcChHHHHHHHHHhcCCCeEEEEecCcCCCCCCCEEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCC
Confidence 8999999999774 4678999 8999987774 44578899999999996532 1 112222346788999999999
Q ss_pred cEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecccCc
Q 030035 73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGS 113 (184)
Q Consensus 73 PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Gr 113 (184)
|++|||.|+|+|+++ |+++.++.+|.-++
T Consensus 81 ~ilgIC~G~qlLa~~------------GLL~g~l~~n~~~~ 109 (219)
T PRK03619 81 PVLGICNGFQILTEA------------GLLPGALTRNASLK 109 (219)
T ss_pred EEEEECHHHHHHHHc------------CCCCCeEEEcCCCc
Confidence 999999999999985 56677788886654
No 48
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.59 E-value=3.3e-14 Score=112.92 Aligned_cols=130 Identities=26% Similarity=0.374 Sum_probs=91.8
Q ss_pred CHHHHHHHHHHCCCeEEEEcCCC-------CCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHH
Q 030035 11 SFNEHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIF 83 (184)
Q Consensus 11 ~~~~~~~~L~~~G~~v~~v~~~~-------~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~Ql 83 (184)
...++.++|+++|+++.+++... ++.++|++||+||.....+ +. ...+.++++.+.++|+||||+|||+
T Consensus 9 ~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~d~iii~Gg~~~~~d-~~---~~~~~i~~~~~~~~PilGIC~G~Q~ 84 (192)
T PF00117_consen 9 FTHSLVRALRELGIDVEVVRVDSDFEEPLEDLDDYDGIIISGGPGSPYD-IE---GLIELIREARERKIPILGICLGHQI 84 (192)
T ss_dssp THHHHHHHHHHTTEEEEEEETTGGHHHHHHHTTTSSEEEEECESSSTTS-HH---HHHHHHHHHHHTTSEEEEETHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEECCCchhhhhhhhcCCCEEEECCcCCcccc-cc---ccccccccccccceEEEEEeehhhh
Confidence 55667899999999988886332 2678999999999766543 22 2567788888889999999999999
Q ss_pred HHHhhhcccCCCccccCcceeeeeecc----cCceeEEeeccccCCccccCCCCCcceeEeeecCceEEe---cCCCcEE
Q 030035 84 LANKAVGQKLGGQELVGGLDCTVHRNF----FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLD---VGPDVDV 156 (184)
Q Consensus 84 La~~~~~~~~~~~~~LG~ldv~v~rn~----~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~---~~~~v~v 156 (184)
|+.+++. +|.++. .|.+..-.... ..+.+ .+.|+.|.+.+.|...|.. +|++.++
T Consensus 85 la~~~G~--------------~v~~~~~~~~~g~~~~~~~~~-~~~~~---~~~~~~~~~~~~H~~~v~~~~~~p~~~~~ 146 (192)
T PF00117_consen 85 LAHALGG--------------KVVPSPEKPHHGGNIPISETP-EDPLF---YGLPESFKAYQYHSDAVNPDDLLPEGFEV 146 (192)
T ss_dssp HHHHTTH--------------EEEEEESEEEEEEEEEEEEEE-EHGGG---TTSTSEEEEEEEECEEEEEGHHHHTTEEE
T ss_pred hHHhcCC--------------ccccccccccccccccccccc-ccccc---cccccccccccccceeeeccccccccccc
Confidence 9999864 222321 11111111100 01222 2455689999999999999 9999999
Q ss_pred EEecCC
Q 030035 157 LADYPV 162 (184)
Q Consensus 157 La~~~~ 162 (184)
||+.++
T Consensus 147 la~s~~ 152 (192)
T PF00117_consen 147 LASSSD 152 (192)
T ss_dssp EEEETT
T ss_pred cccccc
Confidence 999865
No 49
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.58 E-value=2.3e-14 Score=120.20 Aligned_cols=115 Identities=25% Similarity=0.379 Sum_probs=79.3
Q ss_pred CEEEEEecCCCH--HHHHHHHHHCCCeEEEEcCC------CCCCCCCEEEEcCCchhH--H-------HHHHhcCChHHH
Q 030035 1 MVVGVLALQGSF--NEHIAALKRLGVKGVEIRKP------DQLQNVSSLIIPGGESTT--M-------ARLAEYHNLFPA 63 (184)
Q Consensus 1 m~IgVl~~qG~~--~~~~~~L~~~G~~v~~v~~~------~~l~~~DglIipGG~~~~--~-------~~l~~~~~l~~~ 63 (184)
|||+||.++|.. .+..++|+++|+++.++... .+++++|+|+||||++.. . ..+.. .+.+.
T Consensus 4 ~kvaVl~~pG~n~d~e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGGfs~gD~l~~g~~~~~~l~~--~l~~~ 81 (261)
T PRK01175 4 IRVAVLRMEGTNCEDETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFSAGDYIRAGAIFAARLKA--VLRKD 81 (261)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHCCCcEEEEeeccccccccchhhCCEEEECCCCCcccccccchhhHHHHHH--HHHHH
Confidence 689999999965 44689999999998877521 347789999999996421 1 12221 24478
Q ss_pred HHHHHHcCCcEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEee
Q 030035 64 LREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFE 119 (184)
Q Consensus 64 l~~~~~~g~PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~ 119 (184)
|++++++++|++|||.|+|+|+++..-+..+... .--+++..+|.-++-+..+.
T Consensus 82 Ik~f~~~gkpVLGICnG~QlLa~~GlLpg~~~~~--~~~~~~L~~N~s~~f~~~~~ 135 (261)
T PRK01175 82 IEEFIDEGYPIIGICNGFQVLVELGLLPGFDEIA--EKPEMALTVNESNRFECRPT 135 (261)
T ss_pred HHHHHHCCCeEEEECHHHHHHHHCCCCCCCCccc--cCCcceEeecCCCCeEEeee
Confidence 9999999999999999999999864321100000 01123788898887665543
No 50
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.58 E-value=1.3e-14 Score=119.38 Aligned_cols=87 Identities=29% Similarity=0.534 Sum_probs=68.3
Q ss_pred CEEEEEecCCCH--HHHHHHHHHCCCeEEEEcCC-CCCCCCCEEEEcCCchhH--H--HHHHhcCChHHHHHHHHHcCCc
Q 030035 1 MVVGVLALQGSF--NEHIAALKRLGVKGVEIRKP-DQLQNVSSLIIPGGESTT--M--ARLAEYHNLFPALREFVKMGKP 73 (184)
Q Consensus 1 m~IgVl~~qG~~--~~~~~~L~~~G~~v~~v~~~-~~l~~~DglIipGG~~~~--~--~~l~~~~~l~~~l~~~~~~g~P 73 (184)
|||+||.+.|.. .+..++|+++|+++..+... .+++++|+||||||.+.. . ..+.....+.++|+++.+.|+|
T Consensus 1 ~~v~Vl~~~G~n~~~~~~~al~~~G~~~~~i~~~~~~l~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~p 80 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDTVYALRLLGVDAEIVWYEDGSLPDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVP 80 (227)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHHCCCeEEEEecCCCCCCCCCEEEECCCCcccccccccchhcchHHHHHHHHHHHcCCE
Confidence 899999999875 46789999999998877543 347899999999996421 1 1122222367889999999999
Q ss_pred EEEEchHHHHHHHh
Q 030035 74 VWGTCAGLIFLANK 87 (184)
Q Consensus 74 vlGIC~G~QlLa~~ 87 (184)
++|||.|+|+|+++
T Consensus 81 vlgIC~G~QlLa~~ 94 (227)
T TIGR01737 81 VLGICNGFQILVEA 94 (227)
T ss_pred EEEECHHHHHHHHc
Confidence 99999999999985
No 51
>CHL00101 trpG anthranilate synthase component 2
Probab=99.58 E-value=5.3e-14 Score=112.59 Aligned_cols=136 Identities=14% Similarity=0.186 Sum_probs=93.3
Q ss_pred EEEEecCCCHHH-HHHHHHHCCCeEEEEcCCC----CC--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035 3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (184)
Q Consensus 3 IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~~----~l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl 75 (184)
|.|+.+...|.. +.+.|+++|+++.+++..+ ++ .++|+|||.||.....+ .+....+.++++.++|+|
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiiisgGpg~~~~-----~~~~~~i~~~~~~~~PiL 76 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRD-----SGISLDVISSYAPYIPIL 76 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhCCCCEEEECCCCCChHH-----CcchHHHHHHhcCCCcEE
Confidence 778888888877 5589999999998887431 23 46899999999765432 123344555667899999
Q ss_pred EEchHHHHHHHhhhcccCCCccccCcceeeeeecc---cCceeEEeeccccCCccccCCCCCcceeEeeecCceEE--ec
Q 030035 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNF---FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVL--DV 150 (184)
Q Consensus 76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~---~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~--~~ 150 (184)
|||+|||+|+.+++. +|.|+. .|......... -+-+ .+.|..+.+.+.|...|. ++
T Consensus 77 GIClG~Qlla~~~Gg--------------~V~~~~~~~~g~~~~~~~~~--~~l~---~~~~~~~~v~~~H~~~v~~~~l 137 (190)
T CHL00101 77 GVCLGHQSIGYLFGG--------------KIIKAPKPMHGKTSKIYHNH--DDLF---QGLPNPFTATRYHSLIIDPLNL 137 (190)
T ss_pred EEchhHHHHHHHhCC--------------EEEECCCcccCceeeEeeCC--cHhh---ccCCCceEEEcchhheeecccC
Confidence 999999999998853 333332 22211111111 0111 134557899999999995 68
Q ss_pred CCCcEEEEecCC
Q 030035 151 GPDVDVLADYPV 162 (184)
Q Consensus 151 ~~~v~vLa~~~~ 162 (184)
|++++++|+.++
T Consensus 138 p~~~~vla~s~~ 149 (190)
T CHL00101 138 PSPLEITAWTED 149 (190)
T ss_pred CCceEEEEEcCC
Confidence 999999998765
No 52
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=99.55 E-value=1.3e-13 Score=107.46 Aligned_cols=112 Identities=18% Similarity=0.265 Sum_probs=79.0
Q ss_pred CCCCCCCEEEEcCCchhHH-HHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhhh-----cccCCCccccCcceeee
Q 030035 33 DQLQNVSSLIIPGGESTTM-ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAV-----GQKLGGQELVGGLDCTV 106 (184)
Q Consensus 33 ~~l~~~DglIipGG~~~~~-~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~~-----~~~~~~~~~LG~ldv~v 106 (184)
+.++++|+|+||||.++.. ..+.++.++.+.|++++++|+||+|+|.|+|+|++.+. +..+...+++|+||+++
T Consensus 3 ~~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~d~~e~~~~g~~~~glGllp~~t 82 (158)
T PF07685_consen 3 ELPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESIIDGVEGDADGKRYPGLGLLPIDT 82 (158)
T ss_pred CCCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHhhccccCCCCcceeeeceeeeEE
Confidence 4578999999999987664 34555668999999999999999999999999999998 43334689999999998
Q ss_pred eecccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEecC
Q 030035 107 HRNFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLDVG 151 (184)
Q Consensus 107 ~rn~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~~~ 151 (184)
.... -+.+........... ....+++.=+|.=.+...+
T Consensus 83 ~~~~-~~~~g~~~~~~~~~~------~g~~v~G~E~H~~~~~~~~ 120 (158)
T PF07685_consen 83 TMEK-EKALGYVEARVDNGK------KGEEVRGHEFHYGRTTGIP 120 (158)
T ss_pred EEcC-cEEEEEEEEEECCCC------CCCEEEEEEEeCeEEECCC
Confidence 7654 323333322222111 1135777777754444433
No 53
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.55 E-value=2.7e-13 Score=108.37 Aligned_cols=136 Identities=15% Similarity=0.127 Sum_probs=91.8
Q ss_pred EEEEecCCCHHH-HHHHHHHCCCeEEEEcCCC----CCC--CCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035 3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----QLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (184)
Q Consensus 3 IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~~----~l~--~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl 75 (184)
|.|+...+.|.. +++.|++.|.++.+++..+ +++ ++|+|||.||+....+. ....+.++. .+.++|+|
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~iilsgGP~~~~~~----~~~~~~i~~-~~~~~PiL 76 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEA----GISLAVIRH-FADKLPIL 76 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCeEEEcCCCCChHhC----CCchHHHHH-hcCCCCEE
Confidence 777788888877 6689999999999987542 232 57999999998665422 123455554 46789999
Q ss_pred EEchHHHHHHHhhhcccCCCccccCcceeeeeecc---cCceeEEeeccccCCccccCCCCCcceeEeeecCceE--Eec
Q 030035 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNF---FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAV--LDV 150 (184)
Q Consensus 76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~---~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i--~~~ 150 (184)
|||+|||+|+.+++. +|.++. +|......... -+-+ .+.+.++++.+-|...+ .++
T Consensus 77 GIC~G~Qlla~~~GG--------------~v~~~~~~~~G~~~~~~~~~--~~lf---~~l~~~~~v~~~Hs~~v~~~~l 137 (191)
T PRK06774 77 GVCLGHQALGQAFGA--------------RVVRARQVMHGKTSAICHSG--QGVF---RGLNQPLTVTRYHSLVIAADSL 137 (191)
T ss_pred EECHHHHHHHHHhCC--------------EEEeCCcceecceEEEEecC--chhh---cCCCCCcEEEEeCcceeeccCC
Confidence 999999999999753 333321 23211111110 0111 13345689999999999 478
Q ss_pred CCCcEEEEecCC
Q 030035 151 GPDVDVLADYPV 162 (184)
Q Consensus 151 ~~~v~vLa~~~~ 162 (184)
|++++++|+.++
T Consensus 138 p~~~~vlA~s~~ 149 (191)
T PRK06774 138 PGCFELTAWSER 149 (191)
T ss_pred CCCeEEEEEeCC
Confidence 999999998764
No 54
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.54 E-value=2.5e-13 Score=108.59 Aligned_cols=139 Identities=15% Similarity=0.087 Sum_probs=91.6
Q ss_pred EEEEecCCCHHH-HHHHHHHCCCeEEEEcCCC----CC--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035 3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (184)
Q Consensus 3 IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~~----~l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl 75 (184)
|.++...+.|.. +.+.|++.|+++.+++..+ ++ .++|+|||.||++...+. ....+.++. .+.++|+|
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iils~GPg~p~~~----~~~~~~~~~-~~~~~PiL 76 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEA----GISLDVIRH-YAGRLPIL 76 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCEEEEcCCCCChHHC----CccHHHHHH-hcCCCCEE
Confidence 667777777776 5688999999999987542 22 258999999998665321 123455555 46789999
Q ss_pred EEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccC-CccccCCCCCcceeEeeecCceEE--ecCC
Q 030035 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSV-PALASQEGGPETFRGVFIRAPAVL--DVGP 152 (184)
Q Consensus 76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~-~~~~~~~~~~~~~~a~firap~i~--~~~~ 152 (184)
|||+|+|+|+.+++. +|.|...+.+-........- +-+ .+.+.++.+.+.|...|. ++|+
T Consensus 77 GIClG~Q~la~a~Gg--------------~v~~~~~~~~g~~~~v~~~~~~l~---~~~~~~~~v~~~H~~~v~~~~lp~ 139 (187)
T PRK08007 77 GVCLGHQAMAQAFGG--------------KVVRAAKVMHGKTSPITHNGEGVF---RGLANPLTVTRYHSLVVEPDSLPA 139 (187)
T ss_pred EECHHHHHHHHHcCC--------------EEEeCCCcccCCceEEEECCCCcc---cCCCCCcEEEEcchhEEccCCCCC
Confidence 999999999999853 33333222110000000000 111 233457899999999995 7899
Q ss_pred CcEEEEecCCC
Q 030035 153 DVDVLADYPVP 163 (184)
Q Consensus 153 ~v~vLa~~~~~ 163 (184)
+.+++|+.++-
T Consensus 140 ~~~v~a~~~~~ 150 (187)
T PRK08007 140 CFEVTAWSETR 150 (187)
T ss_pred CeEEEEEeCCC
Confidence 99999987653
No 55
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.51 E-value=7.8e-13 Score=105.73 Aligned_cols=136 Identities=19% Similarity=0.180 Sum_probs=90.5
Q ss_pred EEEEecCCCHHH-HHHHHHHCCCeEEEEcCC----CCCC--CCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035 3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKP----DQLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (184)
Q Consensus 3 IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~----~~l~--~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl 75 (184)
|.++...+.|.. +.+.|+++|+++.+++.. +++. ++|+|||.||..+..+. . ...+.++++ +.++|+|
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iilsgGpg~p~~~-~---~~~~~i~~~-~~~~PvL 76 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPNEA-G---ISLEAIRHF-AGKLPIL 76 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhc-c---hhHHHHHHh-ccCCCEE
Confidence 677777778866 678999999999887632 2232 47999999997654221 1 125667776 6789999
Q ss_pred EEchHHHHHHHhhhcccCCCccccCcceeeeeec---ccCceeEEeeccccCCccccCCCCCcceeEeeecCceE--Eec
Q 030035 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN---FFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAV--LDV 150 (184)
Q Consensus 76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn---~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i--~~~ 150 (184)
|||+|||+|+.+++. +|.++ .+|+ .......-+ +-+ .+.+++|.+...|...| ..+
T Consensus 77 GIC~G~Qll~~~~GG--------------~v~~~~~~~~g~-~~~v~~~~~-~~~---~~l~~~~~v~~~H~~~v~~~~l 137 (188)
T TIGR00566 77 GVCLGHQAMGQAFGG--------------DVVRANTVMHGK-TSEIEHNGA-GIF---RGLFNPLTATRYHSLVVEPETL 137 (188)
T ss_pred EECHHHHHHHHHcCC--------------EEeeCCCccccc-eEEEEECCC-ccc---cCCCCCcEEEEcccceEecccC
Confidence 999999999999853 33332 2331 111111000 011 12334688999999998 478
Q ss_pred CCCcEEEEecCC
Q 030035 151 GPDVDVLADYPV 162 (184)
Q Consensus 151 ~~~v~vLa~~~~ 162 (184)
|++++++|+.++
T Consensus 138 ~~~~~v~a~s~~ 149 (188)
T TIGR00566 138 PTCFPVTAWEEE 149 (188)
T ss_pred CCceEEEEEcCC
Confidence 999999998764
No 56
>PLN02347 GMP synthetase
Probab=99.51 E-value=1.8e-13 Score=124.90 Aligned_cols=141 Identities=17% Similarity=0.229 Sum_probs=92.2
Q ss_pred EEEEEecCCCHHH-HHHHHHHCCCeEEEEcC---CCCCC--CCCEEEEcCCchhHHHHHHhcCChHH-HHHHHHHcCCcE
Q 030035 2 VVGVLALQGSFNE-HIAALKRLGVKGVEIRK---PDQLQ--NVSSLIIPGGESTTMARLAEYHNLFP-ALREFVKMGKPV 74 (184)
Q Consensus 2 ~IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~---~~~l~--~~DglIipGG~~~~~~~l~~~~~l~~-~l~~~~~~g~Pv 74 (184)
||.|+.+...|.. +.++++++|+.+.+++. .+++. ++|+||||||..+.++. ....+.+ .++.+.+.++|+
T Consensus 12 ~IlIID~G~~~t~~I~r~lrelgv~~~v~p~~~~~~~i~~~~~dgIILsGGP~sv~~~--~~p~~~~~i~~~~~~~~iPI 89 (536)
T PLN02347 12 VVLILDYGSQYTHLITRRVRELGVYSLLLSGTASLDRIASLNPRVVILSGGPHSVHVE--GAPTVPEGFFDYCRERGVPV 89 (536)
T ss_pred EEEEEECCCcHHHHHHHHHHHCCCeEEEEECCCCHHHHhcCCCCEEEECCCCCccccc--CCchhhHHHHHHHHhcCCcE
Confidence 6999999877765 56899999999888843 33343 68999999997554321 0001222 233333568999
Q ss_pred EEEchHHHHHHHhhhcccCCCccccCcceeeeeec---ccCceeEEeeccccCCccccCCCCCcc--eeEeeecCceEEe
Q 030035 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN---FFGSQIQSFEAELSVPALASQEGGPET--FRGVFIRAPAVLD 149 (184)
Q Consensus 75 lGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn---~~Grqv~sf~~~~~~~~~~~~~~~~~~--~~a~firap~i~~ 149 (184)
||||+|||+|++++++ +|.|+ .+|..--.+... -+-+ .+.|.. +.++|.|...+.+
T Consensus 90 LGIClG~QlLa~alGG--------------~V~~~~~~e~G~~~v~i~~~--~~Lf---~~l~~~~~~~v~~~Hsd~V~~ 150 (536)
T PLN02347 90 LGICYGMQLIVQKLGG--------------EVKPGEKQEYGRMEIRVVCG--SQLF---GDLPSGETQTVWMSHGDEAVK 150 (536)
T ss_pred EEECHHHHHHHHHcCC--------------EEEecCCcccceEEEEEcCC--Chhh---hcCCCCceEEEEEEEEEEeee
Confidence 9999999999999753 23221 234222111111 0111 122333 7899999999999
Q ss_pred cCCCcEEEEecCCC
Q 030035 150 VGPDVDVLADYPVP 163 (184)
Q Consensus 150 ~~~~v~vLa~~~~~ 163 (184)
+|++.+++|+.++-
T Consensus 151 lP~g~~vlA~s~~~ 164 (536)
T PLN02347 151 LPEGFEVVAKSVQG 164 (536)
T ss_pred CCCCCEEEEEeCCC
Confidence 99999999988753
No 57
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.51 E-value=6e-13 Score=107.16 Aligned_cols=136 Identities=18% Similarity=0.210 Sum_probs=92.4
Q ss_pred EEEEecCCCHHH-HHHHHHHCCCeEEEEcCCC----CC--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035 3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (184)
Q Consensus 3 IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~~----~l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl 75 (184)
|.|+...+.|.. +.+.|+++|.++.+++..+ ++ .++|+|||.||+....+. ....+.++.+ +.++|+|
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iIlsgGP~~p~~~----~~~~~~i~~~-~~~~PvL 76 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEA----GISMEVIRYF-AGKIPIF 76 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhCCCCEEEECCCCCChHhC----CCchHHHHHh-cCCCCEE
Confidence 677777888877 6689999999999987542 11 368999999998655321 1234555543 5689999
Q ss_pred EEchHHHHHHHhhhcccCCCccccCcceeeeeec---ccCceeEEeeccccCCccccCCCCCcceeEeeecCceEE--ec
Q 030035 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN---FFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVL--DV 150 (184)
Q Consensus 76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn---~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~--~~ 150 (184)
|||+|||+|+++++. +|.|+ .+|+... .... .-|-+ .+.|.+|.+.+-|...+. ++
T Consensus 77 GIClG~Qlla~~lGg--------------~V~~~~~~~~G~~~~-i~~~-~~~lf---~~~~~~~~v~~~H~~~v~~~~l 137 (195)
T PRK07649 77 GVCLGHQSIAQVFGG--------------EVVRAERLMHGKTSL-MHHD-GKTIF---SDIPNPFTATRYHSLIVKKETL 137 (195)
T ss_pred EEcHHHHHHHHHcCC--------------EEeeCCCcccCCeEE-EEEC-CChhh---cCCCCCCEEEEechheEecccC
Confidence 999999999999853 33332 2333211 1110 00111 244567899999999984 68
Q ss_pred CCCcEEEEecCC
Q 030035 151 GPDVDVLADYPV 162 (184)
Q Consensus 151 ~~~v~vLa~~~~ 162 (184)
|++++++|+.++
T Consensus 138 p~~~~~~a~s~~ 149 (195)
T PRK07649 138 PDCLEVTSWTEE 149 (195)
T ss_pred CCCeEEEEEcCC
Confidence 999999998764
No 58
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.51 E-value=6.8e-13 Score=105.92 Aligned_cols=136 Identities=20% Similarity=0.237 Sum_probs=89.2
Q ss_pred EEEEecCCCHHH-HHHHHHHCCCeEEEEcCCC----CC--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035 3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (184)
Q Consensus 3 IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~~----~l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl 75 (184)
|.|+.....|.. +.+.|+++|+++.+++... ++ .++|+|||.||..+..+. ....++|++ +..++|+|
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglIlsgGpg~~~d~----~~~~~~l~~-~~~~~PvL 76 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAEA----GISLELIRE-FAGKVPIL 76 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhCCCCEEEEcCCCCChHHc----chHHHHHHH-hcCCCCEE
Confidence 788888888766 6699999999998886431 12 248999999987554321 113455655 45689999
Q ss_pred EEchHHHHHHHhhhcccCCCccccCcceeeeeecc---cCceeEEeeccccCCccccCCCCCcceeEeeecCceEEe--c
Q 030035 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNF---FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLD--V 150 (184)
Q Consensus 76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~---~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~--~ 150 (184)
|||+|||+|+.+++. +|.++. .|.. ...... .-+-+ .+.+.++.+.+.|...|.. +
T Consensus 77 GIClG~Qlla~alGg--------------~v~~~~~~~~g~~-~~v~~~-~~~l~---~~~~~~~~v~~~H~~~v~~~~l 137 (189)
T PRK05670 77 GVCLGHQAIGEAFGG--------------KVVRAKEIMHGKT-SPIEHD-GSGIF---AGLPNPFTVTRYHSLVVDRESL 137 (189)
T ss_pred EECHHHHHHHHHhCC--------------EEEecCCcccCce-eEEEeC-CCchh---ccCCCCcEEEcchhheeccccC
Confidence 999999999999853 222221 1210 000000 00111 1234568889999999954 8
Q ss_pred CCCcEEEEecCC
Q 030035 151 GPDVDVLADYPV 162 (184)
Q Consensus 151 ~~~v~vLa~~~~ 162 (184)
|+++++||+.++
T Consensus 138 p~~~~~la~s~~ 149 (189)
T PRK05670 138 PDCLEVTAWTDD 149 (189)
T ss_pred CCceEEEEEeCC
Confidence 999999999854
No 59
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=99.49 E-value=2.2e-13 Score=122.94 Aligned_cols=105 Identities=25% Similarity=0.354 Sum_probs=80.6
Q ss_pred EEEEEecCC--CHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHH-HHHhcCChHHHHHHHHHcCCcEEEEc
Q 030035 2 VVGVLALQG--SFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMA-RLAEYHNLFPALREFVKMGKPVWGTC 78 (184)
Q Consensus 2 ~IgVl~~qG--~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~-~l~~~~~l~~~l~~~~~~g~PvlGIC 78 (184)
||+|..+.- ||. -.+.|++.- .+.+++.+++|.++|+|+||||+++... .+.++.++.+.|++++++|+||+|||
T Consensus 249 ~Iav~~~~~~~nf~-~~~~L~~~~-~~~f~~~~~~l~~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiC 326 (475)
T TIGR00313 249 RIGVVRLPRISNFT-DFEPLRYEA-FVKFLDLDDSLTGCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGIC 326 (475)
T ss_pred EEEEEcCCcccCcc-ChHHHhhCC-CeEEeCCccccccCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEc
Confidence 688877543 444 456777662 5556666677889999999999876543 23344678999999999999999999
Q ss_pred hHHHHHHHhhhcccC-----CCccccCcceeeeee
Q 030035 79 AGLIFLANKAVGQKL-----GGQELVGGLDCTVHR 108 (184)
Q Consensus 79 ~G~QlLa~~~~~~~~-----~~~~~LG~ldv~v~r 108 (184)
.|||+|++.+.+..+ +..+++|+||+++..
T Consensus 327 gG~q~Lg~~i~d~~g~e~~~~~~~glGll~~~t~~ 361 (475)
T TIGR00313 327 GGYQMLGKELIDKEKKESDVGDIEGLGLLDAKTYF 361 (475)
T ss_pred HHHHHhhhhhcCCccccCCCCCcceeeeeeeEEEE
Confidence 999999999876432 256899999998865
No 60
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.48 E-value=1.2e-12 Score=103.56 Aligned_cols=83 Identities=16% Similarity=0.255 Sum_probs=64.2
Q ss_pred EEEEecCCCHHHHHHHHHHCCCeEEEEcCCCC-----CCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEE
Q 030035 3 VGVLALQGSFNEHIAALKRLGVKGVEIRKPDQ-----LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (184)
Q Consensus 3 IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~~-----l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGI 77 (184)
|+|+.+.+.| .+.++|++.|+++.+++...+ ..++|+|||+||..+.. +.. ...+.++++.+.++|+|||
T Consensus 1 i~i~d~g~~~-~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~~~-~~~---~~~~~~~~~~~~~~PvlGI 75 (178)
T cd01744 1 VVVIDFGVKH-NILRELLKRGCEVTVVPYNTDAEEILKLDPDGIFLSNGPGDPA-LLD---EAIKTVRKLLGKKIPIFGI 75 (178)
T ss_pred CEEEecCcHH-HHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEECCCCCChh-HhH---HHHHHHHHHHhCCCCEEEE
Confidence 5788887776 578999999999998864322 24799999999975432 111 2467788888889999999
Q ss_pred chHHHHHHHhhhc
Q 030035 78 CAGLIFLANKAVG 90 (184)
Q Consensus 78 C~G~QlLa~~~~~ 90 (184)
|+|+|+|+.+++.
T Consensus 76 C~G~Q~l~~~~Gg 88 (178)
T cd01744 76 CLGHQLLALALGA 88 (178)
T ss_pred CHHHHHHHHHcCC
Confidence 9999999999853
No 61
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.47 E-value=9.4e-13 Score=123.70 Aligned_cols=138 Identities=14% Similarity=0.199 Sum_probs=95.0
Q ss_pred CEEEEEecCC-CHHHHHHHHHHCCCeEEEEcCC--CCC---CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcE
Q 030035 1 MVVGVLALQG-SFNEHIAALKRLGVKGVEIRKP--DQL---QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (184)
Q Consensus 1 m~IgVl~~qG-~~~~~~~~L~~~G~~v~~v~~~--~~l---~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pv 74 (184)
+||.|+.... +...+.+.|++.|+++.+++.. +++ .++|+|||.||.+...+ .+..+.|+++++.++|+
T Consensus 517 ~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~~~~~~~~~~~DgLILsgGPGsp~d-----~~~~~~I~~~~~~~iPv 591 (717)
T TIGR01815 517 RRILLVDHEDSFVHTLANYLRQTGASVTTLRHSHAEAAFDERRPDLVVLSPGPGRPAD-----FDVAGTIDAALARGLPV 591 (717)
T ss_pred CEEEEEECCChhHHHHHHHHHHCCCeEEEEECCCChhhhhhcCCCEEEEcCCCCCchh-----cccHHHHHHHHHCCCCE
Confidence 4788888754 4566789999999999888643 222 46899999887655432 23567888888899999
Q ss_pred EEEchHHHHHHHhhhcccCCCccccCcceeeeeecc---cCc--eeEEeeccccCCccccCCCCCcceeEeeecCceE--
Q 030035 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNF---FGS--QIQSFEAELSVPALASQEGGPETFRGVFIRAPAV-- 147 (184)
Q Consensus 75 lGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~---~Gr--qv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i-- 147 (184)
||||+|||+|+++++. +|.+.. .|. .+.-.... +-+ .+.|..+.+.+-|+.++
T Consensus 592 LGICLG~QlLa~a~GG--------------~V~~~~~p~~G~~~~V~~~~~~---~Lf---~~lp~~~~v~~~HS~~~~~ 651 (717)
T TIGR01815 592 FGVCLGLQGMVEAFGG--------------ALDVLPEPVHGKASRIRVLGPD---ALF---AGLPERLTVGRYHSLFARR 651 (717)
T ss_pred EEECHHHHHHhhhhCC--------------EEEECCCCeeCcceEEEECCCC---hhh---hcCCCCCEEEEECCCCccc
Confidence 9999999999999742 333321 221 11100001 111 23456789999999766
Q ss_pred EecCCCcEEEEecCCC
Q 030035 148 LDVGPDVDVLADYPVP 163 (184)
Q Consensus 148 ~~~~~~v~vLa~~~~~ 163 (184)
..+|++++++|+.++.
T Consensus 652 ~~LP~~~~vlA~s~d~ 667 (717)
T TIGR01815 652 DRLPAELTVTAESADG 667 (717)
T ss_pred ccCCCCeEEEEEeCCC
Confidence 5689999999988663
No 62
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.45 E-value=4.2e-12 Score=103.26 Aligned_cols=154 Identities=16% Similarity=0.150 Sum_probs=90.7
Q ss_pred EEEEEecCCCH-HHHHHHHHHCCCeEEEEcCC---CCC--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035 2 VVGVLALQGSF-NEHIAALKRLGVKGVEIRKP---DQL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (184)
Q Consensus 2 ~IgVl~~qG~~-~~~~~~L~~~G~~v~~v~~~---~~l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl 75 (184)
||.++.....| ..+.+.|+++|+++.+++.. +++ .++|+|||.||++...+.- ...+.++.+. .++|||
T Consensus 3 ~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~~~~l~~~~~~~iIlsgGPg~~~d~~----~~~~li~~~~-~~~PiL 77 (208)
T PRK05637 3 HVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVPVEEILAANPDLICLSPGPGHPRDAG----NMMALIDRTL-GQIPLL 77 (208)
T ss_pred EEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCCHHHHHhcCCCEEEEeCCCCCHHHhh----HHHHHHHHHh-CCCCEE
Confidence 68888875555 44779999999999988753 333 2679999988876553321 1234555443 579999
Q ss_pred EEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeeccccCCcccc-CCCCCcceeEeeecCceEEecCCCc
Q 030035 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEAELSVPALAS-QEGGPETFRGVFIRAPAVLDVGPDV 154 (184)
Q Consensus 76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~~~~-~~~~~~~~~a~firap~i~~~~~~v 154 (184)
|||+|+|+|+.+++..-......-|... .+..+.-|++-.-|. .+....... ..-...++.++..|...|.++|++.
T Consensus 78 GIClG~Qlla~alGG~V~~~~~~~G~~~-~i~~~~~~~~~~l~~-~~~~~~~~~~~~~~g~~~~V~~~H~~~v~~lp~~~ 155 (208)
T PRK05637 78 GICLGFQALLEHHGGKVEPCGPVHGTTD-NMILTDAGVQSPVFA-GLATDVEPDHPEIPGRKVPIARYHSLGCVVAPDGM 155 (208)
T ss_pred EEcHHHHHHHHHcCCeeccCCcccceEE-EeEECCCCCCCcccC-CCCcccccccccccCCceEEEEechhhhhcCCCCe
Confidence 9999999999998542111001111111 011111111111111 111000000 0000135889999999999999999
Q ss_pred EEEEecCC
Q 030035 155 DVLADYPV 162 (184)
Q Consensus 155 ~vLa~~~~ 162 (184)
++||+.++
T Consensus 156 ~vlA~s~~ 163 (208)
T PRK05637 156 ESLGTCSS 163 (208)
T ss_pred EEEEEecC
Confidence 99998764
No 63
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.43 E-value=3.8e-13 Score=107.59 Aligned_cols=76 Identities=25% Similarity=0.374 Sum_probs=55.8
Q ss_pred HHHHHHHHCCCeEEEEcCCC-------CCCCCCEEEEcCCchhHHHH--------H----HhcC-ChHHHHHHHHHcCCc
Q 030035 14 EHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPGGESTTMAR--------L----AEYH-NLFPALREFVKMGKP 73 (184)
Q Consensus 14 ~~~~~L~~~G~~v~~v~~~~-------~l~~~DglIipGG~~~~~~~--------l----~~~~-~l~~~l~~~~~~g~P 73 (184)
++.++|+++|+.++++.... .+.++|+||||||.+..... + ..+. ...+.|+++++.++|
T Consensus 23 ~~~~~l~~~G~~~~iv~~~~~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~P 102 (189)
T cd01745 23 YYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGKP 102 (189)
T ss_pred HHHHHHHHCCCEEEEeCCCCChHHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHCCCC
Confidence 46788999999998887542 24679999999996432110 0 0100 125678888888999
Q ss_pred EEEEchHHHHHHHhhh
Q 030035 74 VWGTCAGLIFLANKAV 89 (184)
Q Consensus 74 vlGIC~G~QlLa~~~~ 89 (184)
+||||+|||+|+.+++
T Consensus 103 ilgiC~G~Q~l~~~~G 118 (189)
T cd01745 103 ILGICRGMQLLNVALG 118 (189)
T ss_pred EEEEcchHHHHHHHhC
Confidence 9999999999999885
No 64
>PLN02335 anthranilate synthase
Probab=99.43 E-value=5.1e-12 Score=103.66 Aligned_cols=141 Identities=19% Similarity=0.213 Sum_probs=89.6
Q ss_pred CEEEEEecCCCHHH-HHHHHHHCCCeEEEEcCCC-C---C--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCc
Q 030035 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKPD-Q---L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKP 73 (184)
Q Consensus 1 m~IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~~-~---l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~P 73 (184)
+||.|+...+.|.. +.+.|+++|+++.+++... + + .++|+|||.||+....+. ....+.+++ ...++|
T Consensus 19 ~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~iVisgGPg~p~d~----~~~~~~~~~-~~~~~P 93 (222)
T PLN02335 19 GPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDS----GISLQTVLE-LGPLVP 93 (222)
T ss_pred CcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhc----cchHHHHHH-hCCCCC
Confidence 36888887777766 5589999999999987531 1 2 257999999997655321 012344443 345799
Q ss_pred EEEEchHHHHHHHhhhcccCCCccccCcceeeeeecccCce----e-EEeeccccCCccccCCCCCcceeEeeecCceEE
Q 030035 74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQ----I-QSFEAELSVPALASQEGGPETFRGVFIRAPAVL 148 (184)
Q Consensus 74 vlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grq----v-~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~ 148 (184)
+||||+|+|+|+.++++ ++.|..++.. . ..+.....-+-+ ++.|..+.+...|...|.
T Consensus 94 iLGIClG~QlLa~alGg--------------~v~~~~~~~~~G~~~~v~~~~~~~~~Lf---~~l~~~~~v~~~H~~~v~ 156 (222)
T PLN02335 94 LFGVCMGLQCIGEAFGG--------------KIVRSPFGVMHGKSSPVHYDEKGEEGLF---SGLPNPFTAGRYHSLVIE 156 (222)
T ss_pred EEEecHHHHHHHHHhCC--------------EEEeCCCccccCceeeeEECCCCCChhh---hCCCCCCEEEechhheEe
Confidence 99999999999998753 3333332211 1 001100000111 234567899999999986
Q ss_pred --ecCCC-cEEEEecCCC
Q 030035 149 --DVGPD-VDVLADYPVP 163 (184)
Q Consensus 149 --~~~~~-v~vLa~~~~~ 163 (184)
+++++ .+++|+.++.
T Consensus 157 ~~~lp~~~~~v~a~~~~~ 174 (222)
T PLN02335 157 KDTFPSDELEVTAWTEDG 174 (222)
T ss_pred cccCCCCceEEEEEcCCC
Confidence 46766 8999987653
No 65
>PRK13566 anthranilate synthase; Provisional
Probab=99.41 E-value=5.2e-12 Score=118.80 Aligned_cols=137 Identities=15% Similarity=0.171 Sum_probs=93.8
Q ss_pred CEEEEEecCCCH-HHHHHHHHHCCCeEEEEcCCCC-----CCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcE
Q 030035 1 MVVGVLALQGSF-NEHIAALKRLGVKGVEIRKPDQ-----LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (184)
Q Consensus 1 m~IgVl~~qG~~-~~~~~~L~~~G~~v~~v~~~~~-----l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pv 74 (184)
|||.|+.+...+ ..+.+.|++.|+++.+++...+ ..++|+|||.||.....+ .++.+.|+++.++++||
T Consensus 527 ~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~~~~~~~~~~DgVVLsgGpgsp~d-----~~~~~lI~~a~~~~iPI 601 (720)
T PRK13566 527 KRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLSPGPGRPSD-----FDCKATIDAALARNLPI 601 (720)
T ss_pred CEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCChhHhhhcCCCEEEECCCCCChhh-----CCcHHHHHHHHHCCCcE
Confidence 688888887544 4467899999999999875421 247899999887654321 24678899988899999
Q ss_pred EEEchHHHHHHHhhhcccCCCccccCcceeeeeecc---cCc--eeEEeeccccCCccccCCCCCcceeEeeecCceEEe
Q 030035 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNF---FGS--QIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLD 149 (184)
Q Consensus 75 lGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~---~Gr--qv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~ 149 (184)
||||+|||+|+.++++. +.+.. .|. .+.-.+.. +-+ .+.|..|.+.+-|..++..
T Consensus 602 LGIClG~QlLa~alGG~--------------V~~~~~~~~G~~~~V~v~~~~---~Lf---~~lp~~~~v~~~Hs~~v~~ 661 (720)
T PRK13566 602 FGVCLGLQAIVEAFGGE--------------LGQLAYPMHGKPSRIRVRGPG---RLF---SGLPEEFTVGRYHSLFADP 661 (720)
T ss_pred EEEehhHHHHHHHcCCE--------------EEECCCCccCCceEEEECCCC---chh---hcCCCCCEEEEecceeEee
Confidence 99999999999998532 11111 110 11100000 101 1334568888899887754
Q ss_pred --cCCCcEEEEecCC
Q 030035 150 --VGPDVDVLADYPV 162 (184)
Q Consensus 150 --~~~~v~vLa~~~~ 162 (184)
+|++++++|..++
T Consensus 662 ~~Lp~~~~vlA~s~d 676 (720)
T PRK13566 662 ETLPDELLVTAETED 676 (720)
T ss_pred ccCCCceEEEEEeCC
Confidence 8999999999876
No 66
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.41 E-value=8.2e-13 Score=109.33 Aligned_cols=85 Identities=27% Similarity=0.483 Sum_probs=65.1
Q ss_pred EEEEecCCCH--HHHHHHHHHCCCeEEEEcCCC------CCCCCCEEEEcCCchhH--HH--HHHhcCC-hHHHHHHHHH
Q 030035 3 VGVLALQGSF--NEHIAALKRLGVKGVEIRKPD------QLQNVSSLIIPGGESTT--MA--RLAEYHN-LFPALREFVK 69 (184)
Q Consensus 3 IgVl~~qG~~--~~~~~~L~~~G~~v~~v~~~~------~l~~~DglIipGG~~~~--~~--~l~~~~~-l~~~l~~~~~ 69 (184)
|+||.++|.. .++.++|++.|+++.++...+ +++++|+||||||++.. +. ....... +.+.|+++.+
T Consensus 1 v~vl~~pG~n~~~~~~~al~~aG~~v~~v~~~~~~~~~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~ 80 (238)
T cd01740 1 VAVLRFPGSNCDRDMAYAFELAGFEAEDVWHNDLLAGRKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAE 80 (238)
T ss_pred CEEEEcCCcCCHHHHHHHHHHcCCCEEEEeccCCccccCCHhhCCEEEECCCCCcccccccccccccChhHHHHHHHHHh
Confidence 5899999964 468899999999998886322 46789999999996422 11 1011112 6788999999
Q ss_pred cCCcEEEEchHHHHHHHh
Q 030035 70 MGKPVWGTCAGLIFLANK 87 (184)
Q Consensus 70 ~g~PvlGIC~G~QlLa~~ 87 (184)
+++|++|||.|+|+|++.
T Consensus 81 ~g~pvlGIC~G~QlL~~~ 98 (238)
T cd01740 81 RGGLVLGICNGFQILVEL 98 (238)
T ss_pred CCCeEEEECcHHHHHHHc
Confidence 999999999999999996
No 67
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.40 E-value=1.3e-11 Score=98.86 Aligned_cols=135 Identities=17% Similarity=0.148 Sum_probs=89.1
Q ss_pred EEEEecCCCHHH-HHHHHHHCCCeEEEEcCC-CCC-----CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035 3 VGVLALQGSFNE-HIAALKRLGVKGVEIRKP-DQL-----QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (184)
Q Consensus 3 IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~-~~l-----~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl 75 (184)
|.++...+.|.. +.+.|+++|+++.+++.. .++ .+.|++|+.||.....+. ....+.++. ++.++|+|
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~iilsgGp~~~~~~----~~~~~~i~~-~~~~~PiL 76 (193)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNEA----GISLQAIEH-FAGKLPIL 76 (193)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCcEEEEECCCCCHHHHhhCCCCEEEEeCCCCChHHC----cchHHHHHH-hcCCCCEE
Confidence 777777777766 678999999999988743 221 247899999987554321 123455655 56799999
Q ss_pred EEchHHHHHHHhhhcccCCCccccCcceeeeeecc---cCceeEEeeccccCCccccCCCCCcceeEeeecCceEE--ec
Q 030035 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNF---FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVL--DV 150 (184)
Q Consensus 76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~---~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~--~~ 150 (184)
|||+|+|+|+.+++. +|.++. +|... ..... .-+-+ .+.+.++.+..-|...|. ++
T Consensus 77 GIClG~Qlia~a~Gg--------------~v~~~~~~~~G~~~-~~~~~-~~~l~---~~~~~~~~v~~~H~~~v~~~~l 137 (193)
T PRK08857 77 GVCLGHQAIAQVFGG--------------QVVRARQVMHGKTS-PIRHT-GRSVF---KGLNNPLTVTRYHSLVVKNDTL 137 (193)
T ss_pred EEcHHHHHHHHHhCC--------------EEEeCCCceeCceE-EEEEC-CCccc---ccCCCccEEEEccEEEEEcCCC
Confidence 999999999999853 222221 23211 01000 00111 123456888888999886 78
Q ss_pred CCCcEEEEecC
Q 030035 151 GPDVDVLADYP 161 (184)
Q Consensus 151 ~~~v~vLa~~~ 161 (184)
|++++++|+.+
T Consensus 138 p~~~~v~a~s~ 148 (193)
T PRK08857 138 PECFELTAWTE 148 (193)
T ss_pred CCCeEEEEEec
Confidence 99999999875
No 68
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=99.39 E-value=3.7e-13 Score=107.94 Aligned_cols=82 Identities=20% Similarity=0.301 Sum_probs=58.6
Q ss_pred CCCHHHHH-HHHHHCCCeEEEEc-------CCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchH
Q 030035 9 QGSFNEHI-AALKRLGVKGVEIR-------KPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (184)
Q Consensus 9 qG~~~~~~-~~L~~~G~~v~~v~-------~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G 80 (184)
-|+|..+. ..|.+-|......+ ..+||+++||++|+|+..++.+...|...+.+.+++.....++|+|||+|
T Consensus 23 yGgy~nvfvsllg~ege~wd~frV~~gefP~~~Dl~ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkkkvlGICFG 102 (245)
T KOG3179|consen 23 YGGYFNVFVSLLGDEGEQWDLFRVIDGEFPQEEDLEKYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKKKVLGICFG 102 (245)
T ss_pred hcCHHHHHHHHhcccCceeEEEEEecCCCCChhhhhhhceEEEeCCcccccccchHHHHHHHHHHHHHhhccceEEEecc
Confidence 36777754 56777777655443 23678899999999985443322222223677888887778999999999
Q ss_pred HHHHHHhhhc
Q 030035 81 LIFLANKAVG 90 (184)
Q Consensus 81 ~QlLa~~~~~ 90 (184)
||++|++.+.
T Consensus 103 HQiiara~Gg 112 (245)
T KOG3179|consen 103 HQIIARAKGG 112 (245)
T ss_pred HHHHHHhhCC
Confidence 9999999764
No 69
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.37 E-value=1.6e-11 Score=112.11 Aligned_cols=137 Identities=17% Similarity=0.189 Sum_probs=92.1
Q ss_pred CEEEEEecCCCHHH-HHHHHHHCCCeEEEEcCC-------CCCC--CCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHc
Q 030035 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKP-------DQLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKM 70 (184)
Q Consensus 1 m~IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~-------~~l~--~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~ 70 (184)
|||.|+...+.|.. +.+.|++.|.++.++++. +++. ++|+|||.||++...+. +....+.+....
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~~~~IIlSpGPg~p~d~-----~~~~~i~~~~~~ 76 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEA-----GCMPELLTRLRG 76 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHhcCcCEEEEcCCCCChhhC-----CCCHHHHHHHhc
Confidence 48999999999988 558899999999888742 1222 46799999997665321 223333444456
Q ss_pred CCcEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecc---cCceeEEeeccccCCccccCCCCCcceeEeeecCceE
Q 030035 71 GKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNF---FGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAV 147 (184)
Q Consensus 71 g~PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~---~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i 147 (184)
++||||||+|||+|+.+++. +|.|+. +| ++......-. +-+ .+.|.+++++.-|+..+
T Consensus 77 ~iPILGIClG~QlLa~a~GG--------------~V~~~~~~~~G-~~~~i~~~~~-~lf---~~~~~~~~v~~~Hs~~v 137 (531)
T PRK09522 77 KLPIIGICLGHQAIVEAYGG--------------YVGQAGEILHG-KASSIEHDGQ-AMF---AGLTNPLPVARYHSLVG 137 (531)
T ss_pred CCCEEEEcHHHHHHHHhcCC--------------EEEeCCceeee-eEEEEeecCC-ccc---cCCCCCcEEEEehheec
Confidence 89999999999999999853 333321 12 1111111000 111 13455789999999999
Q ss_pred EecCCCcEEEEecC
Q 030035 148 LDVGPDVDVLADYP 161 (184)
Q Consensus 148 ~~~~~~v~vLa~~~ 161 (184)
.++|++.+++|+.+
T Consensus 138 ~~lP~~l~vlA~sd 151 (531)
T PRK09522 138 SNIPAGLTINAHFN 151 (531)
T ss_pred ccCCCCcEEEEecC
Confidence 99999999999743
No 70
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=99.37 E-value=1.7e-12 Score=108.81 Aligned_cols=116 Identities=28% Similarity=0.357 Sum_probs=71.6
Q ss_pred CEEEEEecCCCHHH--HHHHHHHCCCeEEEEc------CCCCCCCCCEEEEcCCchhH-------H--HHHHhcCChHHH
Q 030035 1 MVVGVLALQGSFNE--HIAALKRLGVKGVEIR------KPDQLQNVSSLIIPGGESTT-------M--ARLAEYHNLFPA 63 (184)
Q Consensus 1 m~IgVl~~qG~~~~--~~~~L~~~G~~v~~v~------~~~~l~~~DglIipGG~~~~-------~--~~l~~~~~l~~~ 63 (184)
.||+||.+.|...+ ...+|+..|+++..|. ...+|+++|+|+||||+|.. + ..+..+..+.+.
T Consensus 2 pkV~Vl~~pGtNce~e~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~~~lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~~ 81 (259)
T PF13507_consen 2 PKVAVLRFPGTNCERETAAAFENAGFEPEIVHINDLLSGESDLDDFDGLVIPGGFSYGDYLRSGAIAAARLLFNSPLMDA 81 (259)
T ss_dssp -EEEEEE-TTEEEHHHHHHHHHCTT-EEEEEECCHHHTTS--GCC-SEEEE-EE-GGGGTTSTTHHHHHHHCCSCCCHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHcCCCceEEEEEecccccCchhhCcEEEECCccCccccchHHHHHHHHhhccHHHHHH
Confidence 38999999997544 7789999999998874 23468899999999997532 1 122222467899
Q ss_pred HHHHHHc-CCcEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEe
Q 030035 64 LREFVKM-GKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSF 118 (184)
Q Consensus 64 l~~~~~~-g~PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf 118 (184)
|++++++ |+++||||.|+|+|.+.-.-+. + ...-.--.++..+|.-++-...+
T Consensus 82 i~~f~~~~g~~vLGIcNGfQiL~~~Gllp~-~-~~~~~~~~~~L~~N~s~~fe~rw 135 (259)
T PF13507_consen 82 IREFLERPGGFVLGICNGFQILVELGLLPG-G-EIKDSEQSPALTPNASGRFESRW 135 (259)
T ss_dssp HHHHHHCTT-EEEEECHHHHHHCCCCCSTT--------TT--EEE--TTSS-EEEE
T ss_pred HHHHHhcCCCeEEEEchHhHHHHHhCcCCC-c-cccccCCCcEEcCCCCCCeEEEE
Confidence 9999998 9999999999999987532110 0 00012234488899888755554
No 71
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.34 E-value=3.2e-11 Score=96.30 Aligned_cols=140 Identities=19% Similarity=0.258 Sum_probs=89.9
Q ss_pred CEEEEEecCCCHHH-HHHHHHHCCCeEEEEcCC-CC---C--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCc
Q 030035 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKP-DQ---L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKP 73 (184)
Q Consensus 1 m~IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~-~~---l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~P 73 (184)
|+|.++.-...|.. +++.|++.|.++.++++. .+ + .++|+|||+-|+++.- +..-+.+.|+++ ...+|
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~----d~G~~~~~i~~~-~~~~P 76 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPK----DAGISLELIRRF-AGRIP 76 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcCCCEEEEcCCCCChH----HcchHHHHHHHh-cCCCC
Confidence 46888877777755 668999999999988765 11 2 3589999955443331 111256778887 56799
Q ss_pred EEEEchHHHHHHHhhhcccCCCccccCcceeeeee--cccCceeEEeeccccCCccccCCCCCcceeEeeecCceEEe--
Q 030035 74 VWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHR--NFFGSQIQSFEAELSVPALASQEGGPETFRGVFIRAPAVLD-- 149 (184)
Q Consensus 74 vlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~r--n~~Grqv~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~~-- 149 (184)
+||||+|+|.|+++++. +|.| ++.=+++.....+ . ..+- .++|++|.+.==|+=.+.+
T Consensus 77 iLGVCLGHQai~~~fGg--------------~V~~a~~~~HGK~s~i~h~-g-~~iF--~glp~~f~v~RYHSLvv~~~~ 138 (191)
T COG0512 77 ILGVCLGHQAIAEAFGG--------------KVVRAKEPMHGKTSIITHD-G-SGLF--AGLPNPFTVTRYHSLVVDPET 138 (191)
T ss_pred EEEECccHHHHHHHhCC--------------EEEecCCCcCCeeeeeecC-C-cccc--cCCCCCCEEEeeEEEEecCCC
Confidence 99999999999999863 2222 1221222211100 0 0110 2566778776556666776
Q ss_pred cCCCcEEEEecCCC
Q 030035 150 VGPDVDVLADYPVP 163 (184)
Q Consensus 150 ~~~~v~vLa~~~~~ 163 (184)
+|+..+|.|+.++.
T Consensus 139 lP~~l~vtA~~~d~ 152 (191)
T COG0512 139 LPEELEVTAESEDG 152 (191)
T ss_pred CCCceEEEEEeCCC
Confidence 88999999998663
No 72
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.34 E-value=2.5e-11 Score=106.07 Aligned_cols=84 Identities=18% Similarity=0.324 Sum_probs=65.2
Q ss_pred EEEEEecCCCHHHHHHHHHHCCCeEEEEcCC---CCCC--CCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEE
Q 030035 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKP---DQLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (184)
Q Consensus 2 ~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~---~~l~--~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlG 76 (184)
||.|+.+ |--.++++.|+++|+++++++.. +++. ++|+|||+||..+.. .+. ...+.++++.+.++|+||
T Consensus 179 ~I~viD~-G~k~nivr~L~~~G~~v~vvp~~~~~~~i~~~~~DGIvLSgGPgdp~-~~~---~~~~~i~~~~~~~~PilG 253 (360)
T PRK12564 179 KVVAIDF-GVKRNILRELAERGCRVTVVPATTTAEEILALNPDGVFLSNGPGDPA-ALD---YAIEMIRELLEKKIPIFG 253 (360)
T ss_pred EEEEEeC-CcHHHHHHHHHHCCCEEEEEeCCCCHHHHHhcCCCEEEEeCCCCChH-HHH---HHHHHHHHHHHcCCeEEE
Confidence 6888887 65667889999999999998743 2232 689999999875432 121 246788888888999999
Q ss_pred EchHHHHHHHhhhc
Q 030035 77 TCAGLIFLANKAVG 90 (184)
Q Consensus 77 IC~G~QlLa~~~~~ 90 (184)
||+|+|+|+.+++.
T Consensus 254 IClG~QlLa~a~Gg 267 (360)
T PRK12564 254 ICLGHQLLALALGA 267 (360)
T ss_pred ECHHHHHHHHHhCC
Confidence 99999999999864
No 73
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=99.33 E-value=4.2e-12 Score=112.08 Aligned_cols=106 Identities=23% Similarity=0.411 Sum_probs=91.4
Q ss_pred EEEEE---ecCCCHHHHHHHHHHCCCeEEEEcCCC--CCC-CCCEEEEcCCchhHH-HHHHhcCChHHHHHHHHHcCCcE
Q 030035 2 VVGVL---ALQGSFNEHIAALKRLGVKGVEIRKPD--QLQ-NVSSLIIPGGESTTM-ARLAEYHNLFPALREFVKMGKPV 74 (184)
Q Consensus 2 ~IgVl---~~qG~~~~~~~~L~~~G~~v~~v~~~~--~l~-~~DglIipGG~~~~~-~~l~~~~~l~~~l~~~~~~g~Pv 74 (184)
||+|- +|.--|.+..+.|+++|++++.+++.. +++ ++|+|.||||++..+ +.|..+..+.+.|+++.++|+||
T Consensus 247 rIAVA~D~AF~FyY~~nl~~Lr~~GAelv~FSPL~D~~lP~~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~G~pi 326 (451)
T COG1797 247 RIAVARDAAFNFYYPENLELLREAGAELVFFSPLADEELPPDVDAVYLGGGYPELFAEELSANESMRRAIKAFAAAGKPI 326 (451)
T ss_pred eEEEEecchhccccHHHHHHHHHCCCEEEEeCCcCCCCCCCCCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHHHcCCce
Confidence 78874 344568899999999999999998654 476 699999999998875 56777767899999999999999
Q ss_pred EEEchHHHHHHHhhhcccCCCccccCcceeeee
Q 030035 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVH 107 (184)
Q Consensus 75 lGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~ 107 (184)
+|-|.|+..|++.+++.++...+++|+++..+.
T Consensus 327 yaECGGlMYL~~~le~~~G~~~~M~Gvlp~~~~ 359 (451)
T COG1797 327 YAECGGLMYLGESLEDADGDTYEMVGVLPGSTR 359 (451)
T ss_pred EEecccceeehhheeccCCceeeeeeeeccchh
Confidence 999999999999999877778899999998774
No 74
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.31 E-value=1e-11 Score=101.51 Aligned_cols=147 Identities=22% Similarity=0.289 Sum_probs=81.7
Q ss_pred HHHHHHHHHCCCeEEEEcCC---CC----CCCCCEEEEcCCchhH------------HHHHHhcCCh--HHHHHHHHHcC
Q 030035 13 NEHIAALKRLGVKGVEIRKP---DQ----LQNVSSLIIPGGESTT------------MARLAEYHNL--FPALREFVKMG 71 (184)
Q Consensus 13 ~~~~~~L~~~G~~v~~v~~~---~~----l~~~DglIipGG~~~~------------~~~l~~~~~l--~~~l~~~~~~g 71 (184)
.+++++++++|+.++.+... ++ ++.+||||||||..+. ........+. ...++.+.+++
T Consensus 27 ~~Yv~~i~~aG~~pv~ip~~~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~ 106 (217)
T PF07722_consen 27 ASYVKAIEAAGGRPVPIPYDADDEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRG 106 (217)
T ss_dssp HHHHHHHHHTT-EEEEE-SS--HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHcCCEEEEEccCCCHHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcC
Confidence 45789999999999988644 11 4689999999996211 0111111112 33567777789
Q ss_pred CcEEEEchHHHHHHHhhhcccCCCcc-ccCcceeeeeecccCceeEEeeccccCC-ccccCCCCCcceeEeeecCceEEe
Q 030035 72 KPVWGTCAGLIFLANKAVGQKLGGQE-LVGGLDCTVHRNFFGSQIQSFEAELSVP-ALASQEGGPETFRGVFIRAPAVLD 149 (184)
Q Consensus 72 ~PvlGIC~G~QlLa~~~~~~~~~~~~-~LG~ldv~v~rn~~Grqv~sf~~~~~~~-~~~~~~~~~~~~~a~firap~i~~ 149 (184)
+||||||.|||+|+-++++.-..... ..+..+..-..+.+..+.-.+...-.+. -++ .+.+..-..|-..|..
T Consensus 107 ~PilGICrG~Q~lnv~~GGtl~q~~~~~~~~~~~~~~~~~~~~h~v~i~~~s~l~~~~~-----~~~~~vns~Hhq~v~~ 181 (217)
T PF07722_consen 107 KPILGICRGMQLLNVAFGGTLYQDIPDQPGFPDHRQHPQDFPSHPVRIVPGSLLAKILG-----SEEIEVNSFHHQAVKP 181 (217)
T ss_dssp --EEEETHHHHHHHHHCCSSEESCCCCSS-EEECEE-S-TS--EEEEEETTSTCCCTSH-----HCTEEEEEEECEEECC
T ss_pred CCEEEEcHHHHHHHHHhCCCceeecccCcCcccccccccccccccceeccCchHHHHhC-----cCcceeecchhhhhhc
Confidence 99999999999999988643211111 1222222222222333333333211111 111 1356777889999999
Q ss_pred cCCCcEEEEecCCCC
Q 030035 150 VGPDVDVLADYPVPS 164 (184)
Q Consensus 150 ~~~~v~vLa~~~~~~ 164 (184)
++++.+|+|...+..
T Consensus 182 l~~~l~v~A~s~Dg~ 196 (217)
T PF07722_consen 182 LGEGLRVTARSPDGV 196 (217)
T ss_dssp HHCCEEEEEEECTSS
T ss_pred cCCCceEEEEecCCc
Confidence 999999999988654
No 75
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=99.25 E-value=4.1e-11 Score=107.28 Aligned_cols=106 Identities=23% Similarity=0.372 Sum_probs=83.2
Q ss_pred EEEEEecCC--CHHHHHHHHHH-CCCeEEEEcCCCCCCCCCEEEEcCCchhH--HHHHHhcCChHHHHHHHHHcCCcEEE
Q 030035 2 VVGVLALQG--SFNEHIAALKR-LGVKGVEIRKPDQLQNVSSLIIPGGESTT--MARLAEYHNLFPALREFVKMGKPVWG 76 (184)
Q Consensus 2 ~IgVl~~qG--~~~~~~~~L~~-~G~~v~~v~~~~~l~~~DglIipGG~~~~--~~~l~~~~~l~~~l~~~~~~g~PvlG 76 (184)
+|+|+.+.- ||.+. +.|+. .++++.+++..++|.++|.+||||+.++. +..+++ .++.+.|+++++.+.+|+|
T Consensus 253 ~Iav~~lp~isNFtD~-dpL~~~~~v~v~~v~~~~~l~~~dlvIlPGsk~t~~DL~~lr~-~g~d~~i~~~~~~~~~viG 330 (486)
T COG1492 253 RIAVIRLPRISNFTDF-DPLRAEPDVRVRFVKPGSDLRDADLVILPGSKNTIADLKILRE-GGMDEKILEYARKGGDVIG 330 (486)
T ss_pred EEEEecCCCccccccc-hhhhcCCCeEEEEeccCCCCCCCCEEEeCCCcccHHHHHHHHH-cCHHHHHHHHHhCCCCEEE
Confidence 577776642 55553 34554 48999999999999999999999986543 445554 5888899999998999999
Q ss_pred EchHHHHHHHhhhcccC-----CCccccCcceeeeeec
Q 030035 77 TCAGLIFLANKAVGQKL-----GGQELVGGLDCTVHRN 109 (184)
Q Consensus 77 IC~G~QlLa~~~~~~~~-----~~~~~LG~ldv~v~rn 109 (184)
||.|||||++.+.+..+ +..+|||++|+++.-.
T Consensus 331 ICGG~QmLG~~i~Dp~g~Eg~~~~~~GLgLldv~T~~~ 368 (486)
T COG1492 331 ICGGYQMLGRRLKDPSGIEGAKGEAEGLGLLDVETCFA 368 (486)
T ss_pred EcchHHhhhhhhcCcccccCcccccCCccceEEEEEec
Confidence 99999999999987431 2467999999987654
No 76
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=99.25 E-value=1.7e-10 Score=102.11 Aligned_cols=83 Identities=17% Similarity=0.237 Sum_probs=61.3
Q ss_pred EEEEEecCCCHHHHHHHHHHCCCeEEEEcCCC---CC--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEE
Q 030035 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPD---QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (184)
Q Consensus 2 ~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~---~l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlG 76 (184)
||.++. -|+-..+.+.|+++|+++++++... ++ .++|+|||+||+++.. .+.+ ..+.+++++ .++|+||
T Consensus 242 ~IvviD-~G~K~nIlr~L~~~G~~v~VvP~~~~~~ei~~~~pDGIiLSnGPGDP~-~~~~---~ie~ik~l~-~~iPIlG 315 (415)
T PLN02771 242 HVIAYD-FGIKHNILRRLASYGCKITVVPSTWPASEALKMKPDGVLFSNGPGDPS-AVPY---AVETVKELL-GKVPVFG 315 (415)
T ss_pred EEEEEC-CChHHHHHHHHHHcCCeEEEECCCCCHHHHhhcCCCEEEEcCCCCChh-HhhH---HHHHHHHHH-hCCCEEE
Confidence 455544 4788888999999999999986432 22 2689999999975542 2222 456677765 4799999
Q ss_pred EchHHHHHHHhhhc
Q 030035 77 TCAGLIFLANKAVG 90 (184)
Q Consensus 77 IC~G~QlLa~~~~~ 90 (184)
||+|||+|+.+++.
T Consensus 316 ICLGhQlLa~AlGG 329 (415)
T PLN02771 316 ICMGHQLLGQALGG 329 (415)
T ss_pred EcHHHHHHHHhcCC
Confidence 99999999999853
No 77
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.22 E-value=1.1e-10 Score=97.63 Aligned_cols=143 Identities=17% Similarity=0.164 Sum_probs=79.4
Q ss_pred HHHHHHHHCCCeEEEEcCC-C---C----CCCCCEEEEcCCchhH----H---------HHHHhcCChHHHHHHHHHcCC
Q 030035 14 EHIAALKRLGVKGVEIRKP-D---Q----LQNVSSLIIPGGESTT----M---------ARLAEYHNLFPALREFVKMGK 72 (184)
Q Consensus 14 ~~~~~L~~~G~~v~~v~~~-~---~----l~~~DglIipGG~~~~----~---------~~l~~~~~l~~~l~~~~~~g~ 72 (184)
.+++++.++|..++.+... . . ++.+|||||+||..+. + ...++ .-..++|+.+++.++
T Consensus 30 ~y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD-~~e~~li~~a~~~~~ 108 (254)
T PRK11366 30 KYLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRD-LLSMALINAALERRI 108 (254)
T ss_pred HHHHHHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHH-HHHHHHHHHHHHCCC
Confidence 3668888899887777632 1 1 2569999999984221 1 01111 012467888888999
Q ss_pred cEEEEchHHHHHHHhhhcccCCCccccCcceeeeee--------ccc-CceeEEeeccccCCccccCCCCCcceeEeeec
Q 030035 73 PVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHR--------NFF-GSQIQSFEAELSVPALASQEGGPETFRGVFIR 143 (184)
Q Consensus 73 PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~r--------n~~-Grqv~sf~~~~~~~~~~~~~~~~~~~~a~fir 143 (184)
||||||+|+|+|+.++++.-..... ..-.....+ ..+ +++.-.+...-.+..+- +.+..+.+--.|
T Consensus 109 PILGICrG~Qllnva~GGtl~~~~~--~~~~~~~h~~~~~~~~~~~~~~~h~v~~~~~s~l~~i~---~~~~~~~Vns~H 183 (254)
T PRK11366 109 PIFAICRGLQELVVATGGSLHRKLC--EQPELLEHREDPELPVEQQYAPSHEVQVEEGGLLSALL---PECSNFWVNSLH 183 (254)
T ss_pred CEEEECHhHHHHHHHhCCeEeeccc--ccccccccccCCccccccccCCceEEEECCCCcHHHhc---CCCceEEeehHH
Confidence 9999999999999998642111100 000000000 001 11111111110000010 011245555558
Q ss_pred CceEEecCCCcEEEEecCC
Q 030035 144 APAVLDVGPDVDVLADYPV 162 (184)
Q Consensus 144 ap~i~~~~~~v~vLa~~~~ 162 (184)
.+.|.++|++.+|+|+.++
T Consensus 184 ~q~V~~l~~gl~v~A~s~d 202 (254)
T PRK11366 184 GQGAKVVSPRLRVEARSPD 202 (254)
T ss_pred HHHHhhcccceEEEEEcCC
Confidence 8899999999999998766
No 78
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=99.22 E-value=6.9e-11 Score=115.97 Aligned_cols=119 Identities=18% Similarity=0.250 Sum_probs=82.9
Q ss_pred CEEEEEecCCCHHH--HHHHHHHCCCeEEEEc--CC-------------CCCCCCCEEEEcCCchh--HH-------HHH
Q 030035 1 MVVGVLALQGSFNE--HIAALKRLGVKGVEIR--KP-------------DQLQNVSSLIIPGGEST--TM-------ARL 54 (184)
Q Consensus 1 m~IgVl~~qG~~~~--~~~~L~~~G~~v~~v~--~~-------------~~l~~~DglIipGG~~~--~~-------~~l 54 (184)
+||+||.++|...+ ...+|+++|+++..+. +. .+|+++|+|++|||+|. .. ..+
T Consensus 978 pkvaIl~~pGtNce~d~a~Af~~aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFSyGD~l~~~~~~~aa~ 1057 (1239)
T TIGR01857 978 PRVVIPVFPGTNSEYDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFSAGDEPDGSAKFIAAI 1057 (1239)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHcCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccCcccccchhHHHHHHH
Confidence 58999999997765 6689999998877664 21 34789999999999742 11 123
Q ss_pred HhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEeec
Q 030035 55 AEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSFEA 120 (184)
Q Consensus 55 ~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf~~ 120 (184)
..+..+.+.++++++.++++||||.|+|+|.+...-+ ++......--..+..||.-+|.+.++..
T Consensus 1058 ~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~lGLlP-~~~~~~~~~~~p~l~~N~s~rf~~r~v~ 1122 (1239)
T TIGR01857 1058 LRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLP-YGNIEAANETSPTLTYNDINRHVSKIVR 1122 (1239)
T ss_pred hhChHHHHHHHHHHhCCCcEEEechHHHHHHHcCCCc-CccccccccCCceeeecCCCCeEEeeeE
Confidence 3334578899999999999999999999999863221 0000000001237889988887776643
No 79
>PRK06186 hypothetical protein; Validated
Probab=99.19 E-value=4.3e-11 Score=98.54 Aligned_cols=83 Identities=16% Similarity=0.184 Sum_probs=60.8
Q ss_pred CEEEEEe----cCCCHHHHHHHHHHCC----C--eEEEEcCC-----CCCCCCCEEEEcCCchhHHHHHHhcCChHHHHH
Q 030035 1 MVVGVLA----LQGSFNEHIAALKRLG----V--KGVEIRKP-----DQLQNVSSLIIPGGESTTMARLAEYHNLFPALR 65 (184)
Q Consensus 1 m~IgVl~----~qG~~~~~~~~L~~~G----~--~v~~v~~~-----~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~ 65 (184)
.|||++. ++..|.++.++|+.++ . ++.++... +.|+++|||++|||++.. .. .+....++
T Consensus 2 v~IalVGKY~~~~daY~Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~~~l~~~dgilvpgGfg~r--g~---~Gki~ai~ 76 (229)
T PRK06186 2 LRIALVGDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTPEITDPEDLAGFDGIWCVPGSPYR--ND---DGALTAIR 76 (229)
T ss_pred cEEEEEECCcCCcHHHHHHHHHHHHHHHhcCCeeEEEEEchhhcCChhhHhhCCeeEeCCCCCcc--cH---hHHHHHHH
Confidence 3677764 5678999999998864 3 44455421 247789999999998642 11 25677899
Q ss_pred HHHHcCCcEEEEchHHHHHHHhh
Q 030035 66 EFVKMGKPVWGTCAGLIFLANKA 88 (184)
Q Consensus 66 ~~~~~g~PvlGIC~G~QlLa~~~ 88 (184)
.+.+.++|+||||+|||++.-+.
T Consensus 77 ~Are~~iP~LGIClGmQ~avIe~ 99 (229)
T PRK06186 77 FARENGIPFLGTCGGFQHALLEY 99 (229)
T ss_pred HHHHcCCCeEeechhhHHHHHHH
Confidence 99999999999999999865443
No 80
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=99.18 E-value=4.7e-11 Score=96.90 Aligned_cols=99 Identities=17% Similarity=0.183 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHCCCeEEEEc--CCCC--CCCCCEEEEcCCchhHHHHHHhc-CChHHHHHHHHHcCCcEEEEchHHHH
Q 030035 9 QGSFNEHIAALKRLGVKGVEIR--KPDQ--LQNVSSLIIPGGESTTMARLAEY-HNLFPALREFVKMGKPVWGTCAGLIF 83 (184)
Q Consensus 9 qG~~~~~~~~L~~~G~~v~~v~--~~~~--l~~~DglIipGG~~~~~~~l~~~-~~l~~~l~~~~~~g~PvlGIC~G~Ql 83 (184)
.||..-+.++.+++|+.+.++. -.+. .+++|.+++.||.....+-..+. ....+.|+++++.|+|++.||+|+|+
T Consensus 20 ~GNil~Lr~ra~~rgi~v~i~~vsl~d~~~~~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~Ql 99 (250)
T COG3442 20 NGNILVLRQRAEKRGIKVEIVEVSLTDTFPDDSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQL 99 (250)
T ss_pred CCceeeehHHHHhcCCceEEEEeecCCCCCcccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhh
Confidence 4677767788999998776653 2222 35899999999976554333332 23467899999999999999999999
Q ss_pred HHHhhhcccCCCccccCcceeeee
Q 030035 84 LANKAVGQKLGGQELVGGLDCTVH 107 (184)
Q Consensus 84 La~~~~~~~~~~~~~LG~ldv~v~ 107 (184)
|++.++...+....+||+||....
T Consensus 100 LG~yY~~a~G~ri~GlGiLd~~T~ 123 (250)
T COG3442 100 LGQYYETASGTRIDGLGILDHYTE 123 (250)
T ss_pred ccceeecCCCcEeecccceeeeec
Confidence 999998776778899999998665
No 81
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.18 E-value=2.7e-10 Score=100.20 Aligned_cols=85 Identities=14% Similarity=0.308 Sum_probs=63.8
Q ss_pred CEEEEEecCCCHHHHHHHHHHCCCeEEEEcCCC---CCC--CCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRKPD---QLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (184)
Q Consensus 1 m~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~---~l~--~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl 75 (184)
+||.|+.+ |--..+.+.|+++|+++.+++... ++. ++|+|||+||+.... .+. .+.+.++++++.++|+|
T Consensus 193 ~~I~viD~-g~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~~dgIilSgGPg~p~-~~~---~~i~~i~~~~~~~~Pil 267 (382)
T CHL00197 193 LKIIVIDF-GVKYNILRRLKSFGCSITVVPATSPYQDILSYQPDGILLSNGPGDPS-AIH---YGIKTVKKLLKYNIPIF 267 (382)
T ss_pred CEEEEEEC-CcHHHHHHHHHHCCCeEEEEcCCCCHHHHhccCCCEEEEcCCCCChh-HHH---HHHHHHHHHHhCCCCEE
Confidence 47888888 444458899999999999986432 232 689999999875432 111 14566777777789999
Q ss_pred EEchHHHHHHHhhhc
Q 030035 76 GTCAGLIFLANKAVG 90 (184)
Q Consensus 76 GIC~G~QlLa~~~~~ 90 (184)
|||+|||+|+.+++.
T Consensus 268 GIClGhQlLa~a~Gg 282 (382)
T CHL00197 268 GICMGHQILSLALEA 282 (382)
T ss_pred EEcHHHHHHHHHhCC
Confidence 999999999999864
No 82
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.15 E-value=3.8e-10 Score=98.48 Aligned_cols=83 Identities=16% Similarity=0.350 Sum_probs=63.1
Q ss_pred EEEEEecCCCHHHHHHHHHHCCCeEEEEcCC---CCC--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEE
Q 030035 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKP---DQL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (184)
Q Consensus 2 ~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~---~~l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlG 76 (184)
+|.|+.+ |-...+.+.|++.|+++.+++.. +++ .++|+|||+||+.+..+. . ...+.+++++++ +|+||
T Consensus 169 ~V~viD~-G~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~~DGIiLsgGPgdp~~~-~---~~~~~i~~~~~~-~PvlG 242 (354)
T PRK12838 169 HVALIDF-GYKKSILRSLSKRGCKVTVLPYDTSLEEIKNLNPDGIVLSNGPGDPKEL-Q---PYLPEIKKLISS-YPILG 242 (354)
T ss_pred EEEEECC-CHHHHHHHHHHHCCCeEEEEECCCCHHHHhhcCCCEEEEcCCCCChHHh-H---HHHHHHHHHhcC-CCEEE
Confidence 6777777 66677889999999999988643 223 268999999997543221 1 245678888766 99999
Q ss_pred EchHHHHHHHhhhc
Q 030035 77 TCAGLIFLANKAVG 90 (184)
Q Consensus 77 IC~G~QlLa~~~~~ 90 (184)
||+|||+|+.+++.
T Consensus 243 IClG~QlLa~a~Gg 256 (354)
T PRK12838 243 ICLGHQLIALALGA 256 (354)
T ss_pred ECHHHHHHHHHhCC
Confidence 99999999999864
No 83
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=99.15 E-value=1.3e-10 Score=94.54 Aligned_cols=106 Identities=21% Similarity=0.188 Sum_probs=76.2
Q ss_pred EEEEEecCCC-----HHHHHHHHHHC-CCeEEEEc-----C-CCCCCCCCEEEEcCCc-hhHHHHHHhcCChHHHHHHHH
Q 030035 2 VVGVLALQGS-----FNEHIAALKRL-GVKGVEIR-----K-PDQLQNVSSLIIPGGE-STTMARLAEYHNLFPALREFV 68 (184)
Q Consensus 2 ~IgVl~~qG~-----~~~~~~~L~~~-G~~v~~v~-----~-~~~l~~~DglIipGG~-~~~~~~l~~~~~l~~~l~~~~ 68 (184)
||+++..... +.+..++++++ |+++..+. . .+.|.++|+|++|||. ...+..+.+ .++.+.|++++
T Consensus 33 ~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~-~~l~~~l~~~~ 111 (212)
T cd03146 33 KVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGGGNTFNLLAQWRE-HGLDAILKAAL 111 (212)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECCchHHHHHHHHHH-cCHHHHHHHHH
Confidence 5666654332 23355788999 99988776 2 3457899999999984 334556665 48889999998
Q ss_pred HcCCcEEEEchHHHHHHHhhhc-----ccC-CCccccCcceeeeee
Q 030035 69 KMGKPVWGTCAGLIFLANKAVG-----QKL-GGQELVGGLDCTVHR 108 (184)
Q Consensus 69 ~~g~PvlGIC~G~QlLa~~~~~-----~~~-~~~~~LG~ldv~v~r 108 (184)
++|+|++|||+|+|+|++.+.. .+. ....+||++|..+.-
T Consensus 112 ~~g~~i~G~SAGa~i~~~~~~~~~~~~~e~~~~~~GLGll~~~v~p 157 (212)
T cd03146 112 ERGVVYIGWSAGSNCWFPSIGTTDSMPIELPPSFNGLGLLPFQICP 157 (212)
T ss_pred HCCCEEEEECHhHHhhCCCccccCCCCCccccccceecCcCccccC
Confidence 8999999999999999996321 111 246799999876543
No 84
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=99.14 E-value=2.4e-10 Score=99.84 Aligned_cols=83 Identities=17% Similarity=0.324 Sum_probs=63.3
Q ss_pred EEEEEecCCCHHHHHHHHHHCCCeEEEEcCCC---CCC--CCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEE
Q 030035 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPD---QLQ--NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (184)
Q Consensus 2 ~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~---~l~--~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlG 76 (184)
||.|+.+ |--.++.+.|+++|+++++++... ++. .+|+|||+||..+.. .+. ...+.++++++ ++|+||
T Consensus 175 ~i~viD~-G~k~ni~~~L~~~G~~v~vvp~~~~~~~i~~~~pDGIiLSgGPgdp~-~~~---~~i~~i~~~~~-~~PILG 248 (358)
T TIGR01368 175 RVVVIDF-GVKQNILRRLVKRGCEVTVVPYDTDAEEIKKYNPDGIFLSNGPGDPA-AVE---PAIETIRKLLE-KIPIFG 248 (358)
T ss_pred EEEEEeC-CcHHHHHHHHHHCCCEEEEEcCCCCHHHHHhhCCCEEEECCCCCCHH-HHH---HHHHHHHHHHc-CCCEEE
Confidence 6888887 666678899999999999886432 232 359999999975431 222 24677888876 899999
Q ss_pred EchHHHHHHHhhhc
Q 030035 77 TCAGLIFLANKAVG 90 (184)
Q Consensus 77 IC~G~QlLa~~~~~ 90 (184)
||+|||+|+.+++.
T Consensus 249 IClG~QlLa~a~Gg 262 (358)
T TIGR01368 249 ICLGHQLLALAFGA 262 (358)
T ss_pred ECHHHHHHHHHhCC
Confidence 99999999999864
No 85
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.13 E-value=7.9e-10 Score=101.24 Aligned_cols=136 Identities=15% Similarity=0.162 Sum_probs=86.3
Q ss_pred EEEEecCCCHHH-HHHHHHHCCCe-EEEEcCC----CCC--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcE
Q 030035 3 VGVLALQGSFNE-HIAALKRLGVK-GVEIRKP----DQL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPV 74 (184)
Q Consensus 3 IgVl~~qG~~~~-~~~~L~~~G~~-v~~v~~~----~~l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pv 74 (184)
|-|+.-.+.|.. +.+.|++.|.+ +.++.+. +++ .++|+|||+||+....+. ....+.++. +..++|+
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~d~vIlsgGP~~p~~~----~~~~~li~~-~~~~~Pv 76 (534)
T PRK14607 2 IILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEA----GISVEVIRH-FSGKVPI 76 (534)
T ss_pred EEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHHHhcCCCEEEECCCCCChhhC----CccHHHHHH-hhcCCCE
Confidence 666666677765 56889999986 6665432 122 257999999998655321 113455655 4678999
Q ss_pred EEEchHHHHHHHhhhcccCCCccccCcceeeeeecc---cCcee-EEeeccccCCccccCCCCCcceeEeeecCceEE--
Q 030035 75 WGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNF---FGSQI-QSFEAELSVPALASQEGGPETFRGVFIRAPAVL-- 148 (184)
Q Consensus 75 lGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~---~Grqv-~sf~~~~~~~~~~~~~~~~~~~~a~firap~i~-- 148 (184)
||||+|||+|+.+++. +|.++. .|... .....+ +-+ ++.|..+.+.+.|...|.
T Consensus 77 LGIClG~QlLa~a~Gg--------------~V~~~~~~~~G~~~~v~~~~~---~lf---~~~~~~~~v~~~Hs~~v~~~ 136 (534)
T PRK14607 77 LGVCLGHQAIGYAFGG--------------KIVHAKRILHGKTSPIDHNGK---GLF---RGIPNPTVATRYHSLVVEEA 136 (534)
T ss_pred EEEcHHHHHHHHHcCC--------------eEecCCccccCCceeEEECCC---cch---hcCCCCcEEeeccchheecc
Confidence 9999999999999853 222221 12110 001000 111 133456788889999885
Q ss_pred ecCCCcEEEEecCCC
Q 030035 149 DVGPDVDVLADYPVP 163 (184)
Q Consensus 149 ~~~~~v~vLa~~~~~ 163 (184)
++|++.+++|+.++-
T Consensus 137 ~lp~~~~vlA~s~d~ 151 (534)
T PRK14607 137 SLPECLEVTAKSDDG 151 (534)
T ss_pred cCCCCeEEEEEcCCC
Confidence 689999999987653
No 86
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=99.09 E-value=1.2e-09 Score=90.42 Aligned_cols=106 Identities=19% Similarity=0.290 Sum_probs=81.7
Q ss_pred EEEEEecC---CCHHH----HHHHHHHCCCeEEEEcCCCC----CCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHc
Q 030035 2 VVGVLALQ---GSFNE----HIAALKRLGVKGVEIRKPDQ----LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKM 70 (184)
Q Consensus 2 ~IgVl~~q---G~~~~----~~~~L~~~G~~v~~v~~~~~----l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~ 70 (184)
||.++-.. +++.+ ..++++++|+++..++..++ |.++|+|+++||....+.+..+..++.+.|++++++
T Consensus 33 ~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~ 112 (233)
T PRK05282 33 KAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKN 112 (233)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHC
Confidence 56665443 33333 45678889999998887766 789999999999887776666667899999999999
Q ss_pred CCcEEEEchHHHHHHHhhhccc------CCCccccCcceeeee
Q 030035 71 GKPVWGTCAGLIFLANKAVGQK------LGGQELVGGLDCTVH 107 (184)
Q Consensus 71 g~PvlGIC~G~QlLa~~~~~~~------~~~~~~LG~ldv~v~ 107 (184)
|+|++|+|+|+.+++..+.... .....+||+++..+.
T Consensus 113 G~~~~G~SAGAii~~~~i~~~~~~~~~~~~~~~gLglv~~~i~ 155 (233)
T PRK05282 113 GTPYIGWSAGANVAGPTIRTTNDMPIVDPPSFDALGLFPFQIN 155 (233)
T ss_pred CCEEEEECHHHHhhhccceecCCCCcccccCCCcccceeeeec
Confidence 9999999999999999775311 113568999997664
No 87
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.09 E-value=2.2e-10 Score=96.76 Aligned_cols=77 Identities=23% Similarity=0.437 Sum_probs=50.1
Q ss_pred HHHHHHHHCCCeEEEEcCC---CC----CCCCCEEEEcCCchhH--HHHHHhcCChHHHHHHHHHcC--CcEEEEchHHH
Q 030035 14 EHIAALKRLGVKGVEIRKP---DQ----LQNVSSLIIPGGESTT--MARLAEYHNLFPALREFVKMG--KPVWGTCAGLI 82 (184)
Q Consensus 14 ~~~~~L~~~G~~v~~v~~~---~~----l~~~DglIipGG~~~~--~~~l~~~~~l~~~l~~~~~~g--~PvlGIC~G~Q 82 (184)
+++++++++|+.++.+..+ ++ ++.+|||++|||..+. ...+.....+.+...+..++| +|+||||+|+|
T Consensus 24 ~Yv~~l~~aG~~vvpi~~~~~~~~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG~Q 103 (273)
T cd01747 24 SYVKFLESAGARVVPIWINESEEYYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLGFE 103 (273)
T ss_pred HHHHHHHHCCCeEEEEEeCCcHHHHHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHHHH
Confidence 4778899999997766532 22 5689999999986322 111111111333333333334 89999999999
Q ss_pred HHHHhhhc
Q 030035 83 FLANKAVG 90 (184)
Q Consensus 83 lLa~~~~~ 90 (184)
+|+..+.+
T Consensus 104 lL~~~~gg 111 (273)
T cd01747 104 LLTYLTSG 111 (273)
T ss_pred HHHHHhCC
Confidence 99998864
No 88
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.08 E-value=3.2e-10 Score=93.36 Aligned_cols=145 Identities=19% Similarity=0.262 Sum_probs=84.0
Q ss_pred HHHHHHHCCCeEEEEcCC---CC----CCCCCEEEEcCCch---hHH-----HHH---HhcCCh--HHHHHHHHHcCCcE
Q 030035 15 HIAALKRLGVKGVEIRKP---DQ----LQNVSSLIIPGGES---TTM-----ARL---AEYHNL--FPALREFVKMGKPV 74 (184)
Q Consensus 15 ~~~~L~~~G~~v~~v~~~---~~----l~~~DglIipGG~~---~~~-----~~l---~~~~~l--~~~l~~~~~~g~Pv 74 (184)
+.++..++|.-+.++... ++ ++..|+|||+||.. ..| ... ...++. +..||+++++|+||
T Consensus 31 yv~ai~~aGg~pillP~~~d~~~~~~~l~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPI 110 (243)
T COG2071 31 YVDAIIKAGGIPILLPALEDPEDARQYLDLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPI 110 (243)
T ss_pred HHHHHHHcCCceEEecCCCCHHHHHHHHhhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCE
Confidence 456666788877777622 22 46789999999931 111 011 001122 44799999999999
Q ss_pred EEEchHHHHHHHhhhcccCCCcc-ccCcceeee-eecccCceeEEeeccccC-CccccCCCCCcceeEeeecCceEEecC
Q 030035 75 WGTCAGLIFLANKAVGQKLGGQE-LVGGLDCTV-HRNFFGSQIQSFEAELSV-PALASQEGGPETFRGVFIRAPAVLDVG 151 (184)
Q Consensus 75 lGIC~G~QlLa~~~~~~~~~~~~-~LG~ldv~v-~rn~~Grqv~sf~~~~~~-~~~~~~~~~~~~~~a~firap~i~~~~ 151 (184)
||||.|+|+|+-++++.-+.... -.|.+|-+- .-..+.++.-.++..-.+ +.+| ... +..=-.|-+.|.+++
T Consensus 111 LgICRG~QllNVa~GGtL~q~i~~~~~~~~H~~~~~~~~~~H~V~i~~~s~La~i~g----~~~-~~VNS~HhQaIk~La 185 (243)
T COG2071 111 LGICRGLQLLNVALGGTLYQDISEQPGHIDHRQPNPVHIESHEVHIEPGSKLAKILG----ESE-FMVNSFHHQAIKKLA 185 (243)
T ss_pred EEEccchHHHHHHhcCeeehhhhcccccccccCCCCcccceeEEEecCCccHHHhcC----ccc-eeecchHHHHHHHhC
Confidence 99999999999998753222111 122222110 001222333333322111 2221 111 555566889999999
Q ss_pred CCcEEEEecCCCC
Q 030035 152 PDVDVLADYPVPS 164 (184)
Q Consensus 152 ~~v~vLa~~~~~~ 164 (184)
++.+|.|.-+|-.
T Consensus 186 ~~L~V~A~a~DG~ 198 (243)
T COG2071 186 PGLVVEARAPDGT 198 (243)
T ss_pred CCcEEEEECCCCc
Confidence 9999999977643
No 89
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.06 E-value=2.8e-10 Score=100.52 Aligned_cols=139 Identities=20% Similarity=0.298 Sum_probs=94.6
Q ss_pred EEEEEecCCCHHHHH-HHHHHCCCeEEEEcC---CCCC--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035 2 VVGVLALQGSFNEHI-AALKRLGVKGVEIRK---PDQL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (184)
Q Consensus 2 ~IgVl~~qG~~~~~~-~~L~~~G~~v~~v~~---~~~l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl 75 (184)
+|.||.+.-+|..++ +++|++.+...++.- ...+ -.+.++||+||+.+.+..-.. .+...|-+ -|+|||
T Consensus 18 ~i~iLD~GaQY~~~I~RrvRel~v~se~~p~~t~~~~i~~~~~rgiIiSGGP~SVya~dAP--~~dp~if~---~~vpvL 92 (552)
T KOG1622|consen 18 TILILDFGAQYGKVIDRRVRELNVQSEILPLTTPAKTITEYGPRGIIISGGPNSVYAEDAP--SFDPAIFE---LGVPVL 92 (552)
T ss_pred eEEEEeccchhhHHHHHHHHHHhhhhhhccCCChhhhhhcCCceEEEEeCCCCccccCcCC--CCChhHhc---cCCcce
Confidence 688999988999877 779998877666642 2223 367899999998777644333 23444443 489999
Q ss_pred EEchHHHHHHHhhhcccCCCccccCcceeeeee---cccCceeEEeecccc-CCccccCCCCCcceeEeeecCceEEecC
Q 030035 76 GTCAGLIFLANKAVGQKLGGQELVGGLDCTVHR---NFFGSQIQSFEAELS-VPALASQEGGPETFRGVFIRAPAVLDVG 151 (184)
Q Consensus 76 GIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~r---n~~Grqv~sf~~~~~-~~~~~~~~~~~~~~~a~firap~i~~~~ 151 (184)
|||.|||+|++..+. +|.| .++|-.--+.+...+ +..+. .......+..|.+.+.+++
T Consensus 93 GICYGmQ~i~~~~Gg--------------~V~~~~~RE~G~~eI~v~~~~~lF~~~~----~~~~~~VlltHgdsl~~v~ 154 (552)
T KOG1622|consen 93 GICYGMQLINKLNGG--------------TVVKGMVREDGEDEIEVDDSVDLFSGLH----KTEFMTVLLTHGDSLSKVP 154 (552)
T ss_pred eehhHHHHHHHHhCC--------------ccccccccCCCCceEEcCchhhhhhhhc----ccceeeeeeccccchhhcc
Confidence 999999999998753 2222 145544333333333 22221 1123358899999999999
Q ss_pred CCcEEEEecCCC
Q 030035 152 PDVDVLADYPVP 163 (184)
Q Consensus 152 ~~v~vLa~~~~~ 163 (184)
++.+|.|...+.
T Consensus 155 ~g~kv~a~s~n~ 166 (552)
T KOG1622|consen 155 EGFKVVAFSGNK 166 (552)
T ss_pred ccceeEEeecCc
Confidence 999999998775
No 90
>PRK05380 pyrG CTP synthetase; Validated
Probab=99.05 E-value=4.8e-10 Score=101.83 Aligned_cols=84 Identities=21% Similarity=0.363 Sum_probs=62.9
Q ss_pred EEEEEe----cCCCHHHHHHHHHHCCC------eEEEEcC--------CCCCCCCCEEEEcCCchhHHHHHHhcCChHHH
Q 030035 2 VVGVLA----LQGSFNEHIAALKRLGV------KGVEIRK--------PDQLQNVSSLIIPGGESTTMARLAEYHNLFPA 63 (184)
Q Consensus 2 ~IgVl~----~qG~~~~~~~~L~~~G~------~v~~v~~--------~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~ 63 (184)
+||++. ++.+|.++.++|+.+|+ ++.++.+ .+.++++|+||+|||++... ..+..+.
T Consensus 290 ~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpGGfG~~~-----~~g~i~~ 364 (533)
T PRK05380 290 TIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFGERG-----IEGKILA 364 (533)
T ss_pred EEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecCCCCccc-----cccHHHH
Confidence 677764 56688999999998764 3344432 13467899999999986531 1245778
Q ss_pred HHHHHHcCCcEEEEchHHHHHHHhhhc
Q 030035 64 LREFVKMGKPVWGTCAGLIFLANKAVG 90 (184)
Q Consensus 64 l~~~~~~g~PvlGIC~G~QlLa~~~~~ 90 (184)
++.+.+.++|+||||+|||+|+.++..
T Consensus 365 i~~a~e~~iPiLGIClGmQll~va~Gg 391 (533)
T PRK05380 365 IRYARENNIPFLGICLGMQLAVIEFAR 391 (533)
T ss_pred HHHHHHCCCcEEEEchHHHHHHHHhcc
Confidence 888888999999999999999987743
No 91
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.04 E-value=1.2e-09 Score=108.10 Aligned_cols=117 Identities=17% Similarity=0.126 Sum_probs=80.1
Q ss_pred CEEEEEecCCCHHH--HHHHHHHCCCeEEEEcC------CCCCCCCCEEEEcCCchh--H-------HHHHHhcCChHHH
Q 030035 1 MVVGVLALQGSFNE--HIAALKRLGVKGVEIRK------PDQLQNVSSLIIPGGEST--T-------MARLAEYHNLFPA 63 (184)
Q Consensus 1 m~IgVl~~qG~~~~--~~~~L~~~G~~v~~v~~------~~~l~~~DglIipGG~~~--~-------~~~l~~~~~l~~~ 63 (184)
+||+||.++|...+ ...+|+++|+++..|+- ...|+++++|++|||+|. . ...+..+..+.+.
T Consensus 1038 pkVaVl~~pGtN~~~e~~~Af~~aGf~~~~V~~~dl~~~~~~L~~~~glv~pGGFSyGD~l~sg~~wa~~i~~n~~~~~~ 1117 (1307)
T PLN03206 1038 PKVAIIREEGSNGDREMAAAFYAAGFEPWDVTMSDLLNGRISLDDFRGIVFVGGFSYADVLDSAKGWAGSIRFNEPLLQQ 1117 (1307)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeeecccccccccceeEEEEcCcCCCccccchHHHHHHHHHhChHHHHH
Confidence 58999999997655 67899999998776652 234789999999999742 1 1234434457888
Q ss_pred HHHHHH-cCCcEEEEchHHHHHHHhhhcccCCCc-----cccCcceeeeeecccCceeEEe
Q 030035 64 LREFVK-MGKPVWGTCAGLIFLANKAVGQKLGGQ-----ELVGGLDCTVHRNFFGSQIQSF 118 (184)
Q Consensus 64 l~~~~~-~g~PvlGIC~G~QlLa~~~~~~~~~~~-----~~LG~ldv~v~rn~~Grqv~sf 118 (184)
+++|++ .++++||||.|+|+|.+.-.-+ +... ....--..+..+|.-+|-..++
T Consensus 1118 ~~~f~~~~d~~~LGICNGfQiL~~lgllP-g~~~~~~~~~~~~e~~p~l~~N~s~rfesr~ 1177 (1307)
T PLN03206 1118 FQEFYNRPDTFSLGVCNGCQLMALLGWVP-GPQVGGGLGAGGDPSQPRFVHNESGRFECRF 1177 (1307)
T ss_pred HHHHHhCCCceEEEEcHHHHHHHHcCCCC-CCccccccccccccCCceeeecCCCCeEEec
Confidence 999995 4999999999999999863221 1100 0001123467788877655544
No 92
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=99.02 E-value=6.6e-09 Score=90.99 Aligned_cols=159 Identities=20% Similarity=0.279 Sum_probs=103.3
Q ss_pred CEEEEEecCCC----HHHHHHHHHHC---CCeEEEEcC----CC-CCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHH
Q 030035 1 MVVGVLALQGS----FNEHIAALKRL---GVKGVEIRK----PD-QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFV 68 (184)
Q Consensus 1 m~IgVl~~qG~----~~~~~~~L~~~---G~~v~~v~~----~~-~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~ 68 (184)
|+|.|-.-.|. +...++.|++. ...|..+.. .+ ...+++.+|+|||....+.+-... .-.+.||+|+
T Consensus 1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~~l~~~pw~~~~~LlV~PGG~d~~y~~~l~~-~g~~~Ir~fV 79 (367)
T PF09825_consen 1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTADELLNEPWQSKCALLVMPGGADLPYCRSLNG-EGNRRIRQFV 79 (367)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHHHhhcCccccCCcEEEECCCcchHHHHhhCh-HHHHHHHHHH
Confidence 78888877773 44556677763 356666642 12 246799999999986555333221 1367899999
Q ss_pred HcCCcEEEEchHHHHHHHhhhcccCC------CccccCcceeeeeecccCc-----eeEEeeccccCCccccCCCCCcce
Q 030035 69 KMGKPVWGTCAGLIFLANKAVGQKLG------GQELVGGLDCTVHRNFFGS-----QIQSFEAELSVPALASQEGGPETF 137 (184)
Q Consensus 69 ~~g~PvlGIC~G~QlLa~~~~~~~~~------~~~~LG~ldv~v~rn~~Gr-----qv~sf~~~~~~~~~~~~~~~~~~~ 137 (184)
++|.-.||||+|..+-++..+...+. ..+.|+++++..+-..|.. +..+=.+.+.+..- ...+..+
T Consensus 80 ~~GG~YlGiCAGaY~as~~~ef~~g~p~lev~g~ReL~ffpG~~rG~~~~gf~Y~se~Gara~~l~~~~~---~~~~~~~ 156 (367)
T PF09825_consen 80 ENGGGYLGICAGAYYASSRCEFEVGNPKLEVVGPRELAFFPGIARGPAFPGFQYNSESGARAVKLKVNDS---QAVPSEF 156 (367)
T ss_pred HcCCcEEEECcchhhhcceeEeccCCcceEeecCcccccccCCccCccccCCccCCCCCeEeEEEEecCC---CCCCcee
Confidence 99999999999999998876543322 3457899987665433321 11111112222110 1234678
Q ss_pred eEeeecCceEEecC---CCcEEEEecCCC
Q 030035 138 RGVFIRAPAVLDVG---PDVDVLADYPVP 163 (184)
Q Consensus 138 ~a~firap~i~~~~---~~v~vLa~~~~~ 163 (184)
...|...|++.... .+|+|||+|.+.
T Consensus 157 ~~yynGG~~Fv~~~~~~~~v~vLA~Y~~~ 185 (367)
T PF09825_consen 157 SSYYNGGGVFVDADKYDKNVEVLARYEDD 185 (367)
T ss_pred EEEECCceEEeCccccCCCeEEEEEEecC
Confidence 88888888877763 689999999996
No 93
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.00 E-value=3.5e-09 Score=90.55 Aligned_cols=145 Identities=18% Similarity=0.184 Sum_probs=82.0
Q ss_pred CEEEEEecCCCHHHHH-HHHHHCC-----CeEEEEcCC-------------------CCC--CCCCEEEEcCCchh--HH
Q 030035 1 MVVGVLALQGSFNEHI-AALKRLG-----VKGVEIRKP-------------------DQL--QNVSSLIIPGGEST--TM 51 (184)
Q Consensus 1 m~IgVl~~qG~~~~~~-~~L~~~G-----~~v~~v~~~-------------------~~l--~~~DglIipGG~~~--~~ 51 (184)
+|||||.+--+-.+.. +.++-++ +++..++.. +++ .++||+||+|+.-. ..
T Consensus 36 l~i~ilNlMp~k~~TE~q~~rll~~~~~qv~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGAp~e~~~f 115 (302)
T PRK05368 36 LKILILNLMPKKIETETQFLRLLGNTPLQVDIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLIITGAPVEQLPF 115 (302)
T ss_pred ccEEEEeCCCCCchHHHHHHHHhcCCCceEEEEEEecCCcCCCCCCHHHHHHhccCHHHhccCCCCEEEEcCCCCCCccC
Confidence 4799998865544433 2233333 345444321 123 47999999998643 11
Q ss_pred HH---HHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhhhcccC--CCccccCcceeeeeecccCceeEEeeccccCCc
Q 030035 52 AR---LAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKL--GGQELVGGLDCTVHRNFFGSQIQSFEAELSVPA 126 (184)
Q Consensus 52 ~~---l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~~~~~~--~~~~~LG~ldv~v~rn~~Grqv~sf~~~~~~~~ 126 (184)
+. ..+-..+.++++ +..+|++|||.|+|+++.++.+... ...++.|+...++.. . .-|-
T Consensus 116 edv~YW~El~~i~~w~~---~~~~s~LgICwGaQa~a~algGi~k~~~~~K~~Gv~~~~~~~------------~-~~pL 179 (302)
T PRK05368 116 EDVDYWDELKEILDWAK---THVTSTLFICWAAQAALYHLYGIPKYTLPEKLSGVFEHRVLD------------P-HHPL 179 (302)
T ss_pred CCCchHHHHHHHHHHHH---HcCCCEEEEcHHHHHHHHHcCCCccCCCCCceeEEEEEEEcC------------C-CChh
Confidence 11 111111445555 3589999999999999999865211 122444444332211 0 1121
Q ss_pred cccCCCCCcceeEeeecCceE----EecCCCcEEEEecCCCC
Q 030035 127 LASQEGGPETFRGVFIRAPAV----LDVGPDVDVLADYPVPS 164 (184)
Q Consensus 127 ~~~~~~~~~~~~a~firap~i----~~~~~~v~vLa~~~~~~ 164 (184)
+ .+.++.|.+.-.|-..| .+.+++++|||+.+.-.
T Consensus 180 ~---~g~~d~F~~phSr~~~V~~~~i~~~~~l~vLA~S~~~g 218 (302)
T PRK05368 180 L---RGFDDSFLVPHSRYTEVREEDIRAATGLEILAESEEAG 218 (302)
T ss_pred h---cCCCCccccceeehhhccHHHhccCCCCEEEecCCCCC
Confidence 2 23445677766776666 44678999999987543
No 94
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.00 E-value=1.6e-09 Score=93.50 Aligned_cols=85 Identities=19% Similarity=0.326 Sum_probs=65.0
Q ss_pred EEEEEecCCCHHHHHHHHHHCCCeEEEEcC---CCCC--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEE
Q 030035 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRK---PDQL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (184)
Q Consensus 2 ~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~---~~~l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlG 76 (184)
+|.++. -|--...++.|.++|+++.+|.- .+++ .+.|||+|+.|+++. ..+.. ..+.|+++++..+|++|
T Consensus 181 ~Vv~iD-~GvK~nIlr~L~~rg~~vtVVP~~t~~eeIl~~~pDGiflSNGPGDP-~~~~~---~i~~ik~l~~~~iPifG 255 (368)
T COG0505 181 HVVVID-FGVKRNILRELVKRGCRVTVVPADTSAEEILALNPDGIFLSNGPGDP-APLDY---AIETIKELLGTKIPIFG 255 (368)
T ss_pred EEEEEE-cCccHHHHHHHHHCCCeEEEEcCCCCHHHHHhhCCCEEEEeCCCCCh-hHHHH---HHHHHHHHhccCCCeEE
Confidence 344444 36666788999999999999963 3443 478999999987654 22322 57789999988889999
Q ss_pred EchHHHHHHHhhhcc
Q 030035 77 TCAGLIFLANKAVGQ 91 (184)
Q Consensus 77 IC~G~QlLa~~~~~~ 91 (184)
||+|+||||.+++.+
T Consensus 256 ICLGHQllalA~Ga~ 270 (368)
T COG0505 256 ICLGHQLLALALGAK 270 (368)
T ss_pred EcHHHHHHHHhcCCc
Confidence 999999999998754
No 95
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=98.99 E-value=1.7e-09 Score=98.16 Aligned_cols=84 Identities=24% Similarity=0.386 Sum_probs=61.4
Q ss_pred EEEEEe----cCCCHHHHHHHHHHCCC----eE--EEEcCC-------CCCCCCCEEEEcCCchhHHHHHHhcCChHHHH
Q 030035 2 VVGVLA----LQGSFNEHIAALKRLGV----KG--VEIRKP-------DQLQNVSSLIIPGGESTTMARLAEYHNLFPAL 64 (184)
Q Consensus 2 ~IgVl~----~qG~~~~~~~~L~~~G~----~v--~~v~~~-------~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l 64 (184)
+||++. ++.+|.++.++|+.+|+ .+ .++... +.|+++|+|++|||++... . .+..+.+
T Consensus 291 ~IalVGKY~~~~daY~SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~L~~~dGIiLpGG~G~~~--~---~g~i~ai 365 (525)
T TIGR00337 291 TIGIVGKYVELKDSYLSVIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEFLKGVDGILVPGGFGERG--V---EGKILAI 365 (525)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHhCccccCCEEEEEEecHHHhhhhhhhhhcCCCEEEeCCCCCChh--h---cChHHHH
Confidence 577764 44578889999999886 22 333211 1256799999999986531 1 2456778
Q ss_pred HHHHHcCCcEEEEchHHHHHHHhhhc
Q 030035 65 REFVKMGKPVWGTCAGLIFLANKAVG 90 (184)
Q Consensus 65 ~~~~~~g~PvlGIC~G~QlLa~~~~~ 90 (184)
+.+.+.++|+||||+|||+|+.++..
T Consensus 366 ~~a~e~~iP~LGIClG~Qll~i~~gr 391 (525)
T TIGR00337 366 KYARENNIPFLGICLGMQLAVIEFAR 391 (525)
T ss_pred HHHHHcCCCEEEEcHHHHHHHHHHHH
Confidence 88888999999999999999987753
No 96
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=98.99 E-value=2.4e-09 Score=106.22 Aligned_cols=107 Identities=21% Similarity=0.204 Sum_probs=78.4
Q ss_pred CEEEEEecCCCHHH--HHHHHHHCCCeEEEEc--C----CCCCCCCCEEEEcCCchh--HH-------HHHHhcCChHHH
Q 030035 1 MVVGVLALQGSFNE--HIAALKRLGVKGVEIR--K----PDQLQNVSSLIIPGGEST--TM-------ARLAEYHNLFPA 63 (184)
Q Consensus 1 m~IgVl~~qG~~~~--~~~~L~~~G~~v~~v~--~----~~~l~~~DglIipGG~~~--~~-------~~l~~~~~l~~~ 63 (184)
+||+||.++|...+ ...+|+.+|+++..|+ + ...|+++++|++|||+|. .+ ..+..+..+.+.
T Consensus 1056 p~vail~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~~l~~~~~lv~~GGFSygD~lgsg~~~a~~i~~~~~~~~~ 1135 (1310)
T TIGR01735 1056 PKVAILREQGVNGDREMAAAFDRAGFEAWDVHMSDLLAGRVHLDEFRGLAACGGFSYGDVLGAGKGWAKSILFNPRLRDQ 1135 (1310)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhCCCcEEEEEeccccCCcchhheeEEEEcCCCCCccchhHHHHHHHHHHhChHHHHH
Confidence 48999999997654 6789999999877775 2 124789999999999642 21 124444567888
Q ss_pred HHHHH-HcCCcEEEEchHHHHHHHhhhcccCCCccccCcce-----eeeeecccCceeEEe
Q 030035 64 LREFV-KMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLD-----CTVHRNFFGSQIQSF 118 (184)
Q Consensus 64 l~~~~-~~g~PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ld-----v~v~rn~~Grqv~sf 118 (184)
+++|+ +.++++||||.|+|+|.+.+ |+++ .+..||.-+|-..++
T Consensus 1136 ~~~f~~~~d~~~LGiCNGfQ~L~~~~-----------gllp~~~~~p~l~~N~s~~fe~r~ 1185 (1310)
T TIGR01735 1136 FQAFFKRPDTFSLGVCNGCQMLSNLL-----------EWIPGTENWPHFVRNNSERFEARV 1185 (1310)
T ss_pred HHHHHhCCCceEEEecHHHHHHHHHh-----------CcCCCCCCCceeeecCCCCeEEee
Confidence 99999 77999999999999999432 2222 357888877655444
No 97
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=98.97 E-value=2.7e-09 Score=88.33 Aligned_cols=84 Identities=19% Similarity=0.326 Sum_probs=58.2
Q ss_pred EEEEEec----CCCHHHHHHHHHHC----CCeEEE--EcCC--------CCCCCCCEEEEcCCchhHHHHHHhcCChHHH
Q 030035 2 VVGVLAL----QGSFNEHIAALKRL----GVKGVE--IRKP--------DQLQNVSSLIIPGGESTTMARLAEYHNLFPA 63 (184)
Q Consensus 2 ~IgVl~~----qG~~~~~~~~L~~~----G~~v~~--v~~~--------~~l~~~DglIipGG~~~~~~~l~~~~~l~~~ 63 (184)
|||++.- ..+|.++.++|... +.++.+ +... +.+.++|+||+|||.+.. .+. +..+.
T Consensus 2 ~i~lvg~~~~~~day~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~l~~~dgivl~GG~~~~--~~~---~~~~~ 76 (235)
T cd01746 2 RIALVGKYVELPDAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEENAEEALKGADGILVPGGFGIR--GVE---GKILA 76 (235)
T ss_pred EEEEEECCcCCHHHHHHHHHHHHHHHHHcCCeeEEEEeChhhcCccchhhhhccCCEEEECCCCCCc--chh---hHHHH
Confidence 6777643 34667777777663 334433 3321 246789999999997543 121 35677
Q ss_pred HHHHHHcCCcEEEEchHHHHHHHhhhc
Q 030035 64 LREFVKMGKPVWGTCAGLIFLANKAVG 90 (184)
Q Consensus 64 l~~~~~~g~PvlGIC~G~QlLa~~~~~ 90 (184)
++++.+.++|+||||+|||+|+.++..
T Consensus 77 i~~~~~~~~PvlGIClG~Q~l~~~~g~ 103 (235)
T cd01746 77 IKYARENNIPFLGICLGMQLAVIEFAR 103 (235)
T ss_pred HHHHHHCCceEEEEEhHHHHHHHHHHH
Confidence 888888999999999999999988764
No 98
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.97 E-value=3.6e-09 Score=105.10 Aligned_cols=111 Identities=20% Similarity=0.209 Sum_probs=79.3
Q ss_pred CEEEEEecCCCHHH--HHHHHHHCCCeEEEEc--C----CCCCCCCCEEEEcCCchh--HH-------HHHHhcCChHHH
Q 030035 1 MVVGVLALQGSFNE--HIAALKRLGVKGVEIR--K----PDQLQNVSSLIIPGGEST--TM-------ARLAEYHNLFPA 63 (184)
Q Consensus 1 m~IgVl~~qG~~~~--~~~~L~~~G~~v~~v~--~----~~~l~~~DglIipGG~~~--~~-------~~l~~~~~l~~~ 63 (184)
+||+||.++|...+ ...+|+.+|+++..+. + ...|+++++|++|||+|. .. ..+..+..+.+.
T Consensus 1036 pkv~il~~pG~N~~~e~~~Af~~aG~~~~~v~~~dl~~~~~~l~~~~~l~~~GGFS~gD~lgsg~~~a~~~~~n~~~~~~ 1115 (1290)
T PRK05297 1036 PKVAILREQGVNSHVEMAAAFDRAGFDAIDVHMSDLLAGRVTLEDFKGLVACGGFSYGDVLGAGEGWAKSILFNPRLRDQ 1115 (1290)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHcCCCeEEEEeecCcCCCCChhhCcEEEECCccCCcccchHHHHHHHHhhccHHHHHH
Confidence 58999999997655 6789999999887664 2 134889999999999642 21 222223457888
Q ss_pred HHHHH-HcCCcEEEEchHHHHHHHhh-hcccCCCccccCcceeeeeecccCceeEEe
Q 030035 64 LREFV-KMGKPVWGTCAGLIFLANKA-VGQKLGGQELVGGLDCTVHRNFFGSQIQSF 118 (184)
Q Consensus 64 l~~~~-~~g~PvlGIC~G~QlLa~~~-~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf 118 (184)
+++|. +.++++||||.|+|+|.+.- ..+ +.. -..+..+|.-+|...++
T Consensus 1116 ~~~f~~~~d~~~LGiCNGfQ~L~~lg~l~p------~~~-~~p~l~~N~s~rfesr~ 1165 (1290)
T PRK05297 1116 FEAFFARPDTFALGVCNGCQMMSNLKEIIP------GAE-HWPRFVRNRSEQFEARF 1165 (1290)
T ss_pred HHHHHhCCCceEEEEcHHHHHHHHhCCccC------CCC-CCCeEeecCCCCeEEee
Confidence 99977 67899999999999999973 111 000 12378899888766654
No 99
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=98.93 E-value=9.7e-09 Score=84.12 Aligned_cols=87 Identities=23% Similarity=0.368 Sum_probs=63.1
Q ss_pred EEEEEec-----CC----CHHHHHHHHHHCCCeEEEEcCC---------------------------------C---C--
Q 030035 2 VVGVLAL-----QG----SFNEHIAALKRLGVKGVEIRKP---------------------------------D---Q-- 34 (184)
Q Consensus 2 ~IgVl~~-----qG----~~~~~~~~L~~~G~~v~~v~~~---------------------------------~---~-- 34 (184)
||.|+.- .| .+....++|++.|+++.++... . +
T Consensus 3 kVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~ 82 (217)
T PRK11780 3 KIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAEAD 82 (217)
T ss_pred EEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhHCC
Confidence 7888764 45 2344568899999988776410 0 1
Q ss_pred CCCCCEEEEcCCchhH--H-------HHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035 35 LQNVSSLIIPGGESTT--M-------ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (184)
Q Consensus 35 l~~~DglIipGG~~~~--~-------~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~ 88 (184)
.++||+|+||||.+.. + +.++.+..+.+.++++.++||||.+||.|.++|+..+
T Consensus 83 ~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 83 AEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL 145 (217)
T ss_pred hhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence 2479999999996431 1 2233344578899999999999999999999998865
No 100
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=98.89 E-value=3.3e-08 Score=93.74 Aligned_cols=84 Identities=17% Similarity=0.237 Sum_probs=57.1
Q ss_pred CEEEEEecCCCHHH-HHHHHHHC-C--CeEEEEcCC-------CCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHH
Q 030035 1 MVVGVLALQGSFNE-HIAALKRL-G--VKGVEIRKP-------DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVK 69 (184)
Q Consensus 1 m~IgVl~~qG~~~~-~~~~L~~~-G--~~v~~v~~~-------~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~ 69 (184)
|||.++.....|.. +++.|++. | +++.+++.. .++..+|+|||+||++..... . ....++++.+
T Consensus 6 ~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~p~~~--~---~~~i~~~i~~ 80 (742)
T TIGR01823 6 LHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGNPNNA--Q---DMGIISELWE 80 (742)
T ss_pred ceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCCccch--h---hhHHHHHHHH
Confidence 68999988888865 66888886 3 566766532 124579999998887543210 1 1223333333
Q ss_pred c----CCcEEEEchHHHHHHHhhh
Q 030035 70 M----GKPVWGTCAGLIFLANKAV 89 (184)
Q Consensus 70 ~----g~PvlGIC~G~QlLa~~~~ 89 (184)
. ++||||||+|+|+|+.+++
T Consensus 81 ~~~~~~iPvLGIClG~QlLa~a~G 104 (742)
T TIGR01823 81 LANLDEVPVLGICLGFQSLCLAQG 104 (742)
T ss_pred hcccCCCcEEEEchhhHHHHhhcC
Confidence 2 5999999999999999975
No 101
>PLN02327 CTP synthase
Probab=98.89 E-value=7.2e-09 Score=94.51 Aligned_cols=83 Identities=16% Similarity=0.217 Sum_probs=59.7
Q ss_pred EEEEEe----cCCCHHHHHHHHHHCC----C--eEEEEcC-----C-------------CCCCCCCEEEEcCCchhHHHH
Q 030035 2 VVGVLA----LQGSFNEHIAALKRLG----V--KGVEIRK-----P-------------DQLQNVSSLIIPGGESTTMAR 53 (184)
Q Consensus 2 ~IgVl~----~qG~~~~~~~~L~~~G----~--~v~~v~~-----~-------------~~l~~~DglIipGG~~~~~~~ 53 (184)
+||++. ++..|.++.++|+.++ . ++.++.+ . +.|.++|+|++|||+++. .
T Consensus 299 ~IalVGKY~~l~DAY~Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGIvvpGGfG~~--~ 376 (557)
T PLN02327 299 RIAMVGKYTGLSDSYLSVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGILVPGGFGDR--G 376 (557)
T ss_pred EEEEEecccCCcHhHHHHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEEEeCCCCCCc--c
Confidence 577654 4567888999998864 2 3444531 1 136789999999997542 1
Q ss_pred HHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhhh
Q 030035 54 LAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAV 89 (184)
Q Consensus 54 l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~~ 89 (184)
. .+....++.+.+.++|+||||+|||+++-++.
T Consensus 377 ~---~G~i~ai~~are~~iP~LGIClGmQl~viefa 409 (557)
T PLN02327 377 V---EGKILAAKYARENKVPYLGICLGMQIAVIEFA 409 (557)
T ss_pred c---ccHHHHHHHHHHcCCCEEEEcHHHHHHHHHHH
Confidence 1 24566777777889999999999999998764
No 102
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=98.88 E-value=4e-08 Score=94.39 Aligned_cols=140 Identities=16% Similarity=0.197 Sum_probs=83.8
Q ss_pred CEEEEEecCCCHHH-HHHHHHHC-CCeEEEEcCCC----C-------CCCCCEEEEcCCchhH--HHHHHhcCChHHHHH
Q 030035 1 MVVGVLALQGSFNE-HIAALKRL-GVKGVEIRKPD----Q-------LQNVSSLIIPGGESTT--MARLAEYHNLFPALR 65 (184)
Q Consensus 1 m~IgVl~~qG~~~~-~~~~L~~~-G~~v~~v~~~~----~-------l~~~DglIipGG~~~~--~~~l~~~~~l~~~l~ 65 (184)
|||.++.-...|.. +++.|++. |.+++++++.+ + +..+|+|||.+|++.. ...+-. ..+.|+
T Consensus 82 ~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~~d~Gi---~~~~i~ 158 (918)
T PLN02889 82 VRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTCPADIGI---CLRLLL 158 (918)
T ss_pred ceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccchHHHHH---HHHHHH
Confidence 67888877777766 56888887 99988887542 1 2468999998886533 111111 234455
Q ss_pred HHHHcCCcEEEEchHHHHHHHhhhcccCCCccccCcceeeeeec---ccCceeEEeec--cccCCccccCCCCCcceeEe
Q 030035 66 EFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN---FFGSQIQSFEA--ELSVPALASQEGGPETFRGV 140 (184)
Q Consensus 66 ~~~~~g~PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn---~~Grqv~sf~~--~~~~~~~~~~~~~~~~~~a~ 140 (184)
++ .++||||||+|||+|+++++. +|.|. .+| ++....- .-.+.++. ++.+.+|.++
T Consensus 159 ~~--~~iPILGICLGhQ~i~~~~Gg--------------~V~~~~~~~HG-~~s~I~h~~~~lF~glp--~~~~~~f~v~ 219 (918)
T PLN02889 159 EC--RDIPILGVCLGHQALGYVHGA--------------RIVHAPEPVHG-RLSEIEHNGCRLFDDIP--SGRNSGFKVV 219 (918)
T ss_pred Hh--CCCcEEEEcHHHHHHHHhcCc--------------eEEeCCCceee-eeeeEeecCchhhcCCC--cCCCCCceEE
Confidence 43 479999999999999999853 22221 122 1211110 00111110 0001247776
Q ss_pred eecCceE--EecCCCcEEEEecCC
Q 030035 141 FIRAPAV--LDVGPDVDVLADYPV 162 (184)
Q Consensus 141 firap~i--~~~~~~v~vLa~~~~ 162 (184)
==|+=.| ..+|++.+++|..++
T Consensus 220 RYHSL~v~~~~lP~~L~~~A~t~~ 243 (918)
T PLN02889 220 RYHSLVIDAESLPKELVPIAWTSS 243 (918)
T ss_pred eCCCcccccCCCCCceEEEEEECC
Confidence 6666556 357889999997654
No 103
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=98.85 E-value=1e-08 Score=91.73 Aligned_cols=82 Identities=22% Similarity=0.400 Sum_probs=59.5
Q ss_pred EEEEEe----cCCCHHHHHHHHHHCCC------eEEEEcCC-------CCCCC-CCEEEEcCCchhHHHHHHhcCChHHH
Q 030035 2 VVGVLA----LQGSFNEHIAALKRLGV------KGVEIRKP-------DQLQN-VSSLIIPGGESTTMARLAEYHNLFPA 63 (184)
Q Consensus 2 ~IgVl~----~qG~~~~~~~~L~~~G~------~v~~v~~~-------~~l~~-~DglIipGG~~~~~~~l~~~~~l~~~ 63 (184)
|||++. ++..|.++.++|+.+|+ ++.++.+. +.+.. +|||++|||++.. .. .+....
T Consensus 290 ~IalVGKYv~l~DaY~Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~~~dgIlVPGGFG~R--G~---eGkI~A 364 (533)
T COG0504 290 TIALVGKYVELPDAYKSVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEKLVDGILVPGGFGYR--GV---EGKIAA 364 (533)
T ss_pred EEEEEECCcCchhHHHHHHHHHHhhhhhcCCceeeEEEccccccccchhhhhhcCCEEEeCCCCCcC--ch---HHHHHH
Confidence 577753 67789999999998764 44555421 12222 8999999998643 11 245677
Q ss_pred HHHHHHcCCcEEEEchHHHHHHHhh
Q 030035 64 LREFVKMGKPVWGTCAGLIFLANKA 88 (184)
Q Consensus 64 l~~~~~~g~PvlGIC~G~QlLa~~~ 88 (184)
++.+.++++|.||||+|||+..-++
T Consensus 365 i~yAREn~iP~lGIClGmQ~aviE~ 389 (533)
T COG0504 365 IRYARENNIPFLGICLGMQLAVIEF 389 (533)
T ss_pred HHHHHhcCCCEEEEchhHHHHHHHH
Confidence 8888889999999999999987543
No 104
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=98.84 E-value=1.9e-08 Score=77.86 Aligned_cols=84 Identities=27% Similarity=0.414 Sum_probs=63.3
Q ss_pred EEEEEecCCC----HHHHHHHHHHCCCeEEEEcCC------------------CCCC--CCCEEEEcCCchhHHHHHHhc
Q 030035 2 VVGVLALQGS----FNEHIAALKRLGVKGVEIRKP------------------DQLQ--NVSSLIIPGGESTTMARLAEY 57 (184)
Q Consensus 2 ~IgVl~~qG~----~~~~~~~L~~~G~~v~~v~~~------------------~~l~--~~DglIipGG~~~~~~~l~~~ 57 (184)
||+||.+.|- +....+.|++.|+++.++... ++++ ++|+|++|||... ..+...
T Consensus 1 ~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~--~~~~~~ 78 (166)
T TIGR01382 1 KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAP--EYLRLN 78 (166)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCH--HHhccC
Confidence 6899998883 445678899999888776311 1222 5899999999652 233333
Q ss_pred CChHHHHHHHHHcCCcEEEEchHHHHHHHh
Q 030035 58 HNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (184)
Q Consensus 58 ~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~ 87 (184)
..+.++|+++.++++|+.+||.|.++|+++
T Consensus 79 ~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 108 (166)
T TIGR01382 79 NKAVRLVREFVEKGKPVAAICHGPQLLISA 108 (166)
T ss_pred HHHHHHHHHHHHcCCEEEEEChHHHHHHhc
Confidence 357889999999999999999999999986
No 105
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=98.83 E-value=3.6e-08 Score=74.73 Aligned_cols=87 Identities=24% Similarity=0.326 Sum_probs=65.7
Q ss_pred CEEEEEecCCC----HHHHHHHHHHCCCeEEEEcCC------------------CCCC--CCCEEEEcCCchhHHHHHHh
Q 030035 1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP------------------DQLQ--NVSSLIIPGGESTTMARLAE 56 (184)
Q Consensus 1 m~IgVl~~qG~----~~~~~~~L~~~G~~v~~v~~~------------------~~l~--~~DglIipGG~~~~~~~l~~ 56 (184)
+||+||.++|- +....+.|+..|+++.++... ++.. ++|.|++|||..... .+..
T Consensus 2 ~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~-~~~~ 80 (142)
T cd03132 2 RKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAF-ALAP 80 (142)
T ss_pred CEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHH-HHcc
Confidence 58999999883 444678899999988877421 1222 589999999864321 2233
Q ss_pred cCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035 57 YHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (184)
Q Consensus 57 ~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~ 88 (184)
...+.++|+++.++++||.+||.|..+|+++.
T Consensus 81 ~~~l~~~l~~~~~~~~~I~aic~G~~~La~aG 112 (142)
T cd03132 81 SGRALHFVTEAFKHGKPIGAVGEGSDLLEAAG 112 (142)
T ss_pred ChHHHHHHHHHHhcCCeEEEcCchHHHHHHcC
Confidence 34588999999999999999999999999864
No 106
>PHA03366 FGAM-synthase; Provisional
Probab=98.81 E-value=2.6e-08 Score=99.07 Aligned_cols=118 Identities=20% Similarity=0.159 Sum_probs=80.9
Q ss_pred CEEEEEecCCCHHH--HHHHHHHCCCeEEEEc--C---CCCCCCCCEEEEcCCchhH---------HHHHHhcCChHHHH
Q 030035 1 MVVGVLALQGSFNE--HIAALKRLGVKGVEIR--K---PDQLQNVSSLIIPGGESTT---------MARLAEYHNLFPAL 64 (184)
Q Consensus 1 m~IgVl~~qG~~~~--~~~~L~~~G~~v~~v~--~---~~~l~~~DglIipGG~~~~---------~~~l~~~~~l~~~l 64 (184)
.||+||.++|...+ ...+|+++|+++..|. + ...|+++++|++|||++.. ...+..+..+.+.+
T Consensus 1029 prVaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dL~~~~~l~~f~glv~~GGFS~gD~l~~~~~~a~~il~n~~~~~~~ 1108 (1304)
T PHA03366 1029 HRVAVLLLPGCPGPHALLAAFTNAGFDPYPVSIEELKDGTFLDEFSGLVIGGSSGAEDSYTGARAAVAALLSNPAVRDAL 1108 (1304)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeecCCCCCccccceEEEEcCCCCCcccccHHHHHHHHhhhchHHHHHH
Confidence 38999999997655 6789999999887775 2 1228899999999997531 12333444578889
Q ss_pred HHHHH-cCCcEEEEch-HHHHHHHhhhcc--cCCC--ccccCc-ceeeeeecccCceeEEe
Q 030035 65 REFVK-MGKPVWGTCA-GLIFLANKAVGQ--KLGG--QELVGG-LDCTVHRNFFGSQIQSF 118 (184)
Q Consensus 65 ~~~~~-~g~PvlGIC~-G~QlLa~~~~~~--~~~~--~~~LG~-ldv~v~rn~~Grqv~sf 118 (184)
++|.+ .+.++||||. |+|+|++.-.-. .... ...+.- -+.+..+|.-+|....+
T Consensus 1109 ~~f~~r~dt~~LGiCN~G~Q~L~~lgll~~~~~~~~p~g~i~~~~~~~l~~N~s~rfesr~ 1169 (1304)
T PHA03366 1109 LRFLNRPDTFSLGCGELGCQILFALKAVGSTAPSPVPGTETEEQWPITLEPNASGLYESRW 1169 (1304)
T ss_pred HHHHhCCCCeEEEeCcHHHHHHHHcCCccCCccccccccccccCCCCeEeeeCCCCeEeec
Confidence 99985 5999999998 999999854320 0000 000111 13688899888655544
No 107
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=98.79 E-value=3.6e-08 Score=68.29 Aligned_cols=81 Identities=31% Similarity=0.476 Sum_probs=60.5
Q ss_pred EEEEecCCCH----HHHHHHHHHCCCeEEEEcCCC-------CCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcC
Q 030035 3 VGVLALQGSF----NEHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMG 71 (184)
Q Consensus 3 IgVl~~qG~~----~~~~~~L~~~G~~v~~v~~~~-------~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g 71 (184)
|+++..++.. ....+.+++.++++.+++... +..++|++++|||........ +...+.+++++..+++
T Consensus 1 v~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~-~~~~~~~~i~~~~~~~ 79 (115)
T cd01653 1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLA-RDEALLALLREAAAAG 79 (115)
T ss_pred CEEEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhc-cCHHHHHHHHHHHHcC
Confidence 4666666654 467789999999999886432 256899999999865442211 1123678899998889
Q ss_pred CcEEEEchHHHHH
Q 030035 72 KPVWGTCAGLIFL 84 (184)
Q Consensus 72 ~PvlGIC~G~QlL 84 (184)
+|++|+|.|+|++
T Consensus 80 ~~i~~~c~g~~~l 92 (115)
T cd01653 80 KPILGICLGAQLL 92 (115)
T ss_pred CEEEEECchhHhH
Confidence 9999999999999
No 108
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=98.76 E-value=5.4e-08 Score=77.08 Aligned_cols=86 Identities=27% Similarity=0.431 Sum_probs=65.0
Q ss_pred CEEEEEecCC----CHHHHHHHHHHCCCeEEEEcCC---------------------CCC--CCCCEEEEcCC-chhHHH
Q 030035 1 MVVGVLALQG----SFNEHIAALKRLGVKGVEIRKP---------------------DQL--QNVSSLIIPGG-ESTTMA 52 (184)
Q Consensus 1 m~IgVl~~qG----~~~~~~~~L~~~G~~v~~v~~~---------------------~~l--~~~DglIipGG-~~~~~~ 52 (184)
|||+|+...| ++....+.|+++|.++.++... ++. +++|+|++||| .+...
T Consensus 3 ~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~- 81 (188)
T COG0693 3 KKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEY- 81 (188)
T ss_pred ceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhh-
Confidence 5899999888 4555678999999876554210 223 38999999999 54432
Q ss_pred HHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035 53 RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (184)
Q Consensus 53 ~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~ 88 (184)
+.....+.++++++.+.++||.+||.|.++|+.+.
T Consensus 82 -~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag 116 (188)
T COG0693 82 -LRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAG 116 (188)
T ss_pred -ccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhccc
Confidence 22213578999999999999999999999999875
No 109
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=98.75 E-value=4.6e-08 Score=75.66 Aligned_cols=85 Identities=26% Similarity=0.452 Sum_probs=63.4
Q ss_pred EEEEEecCC----CHHHHHHHHHHCCCeEEEEcCC--------------------CCC--CCCCEEEEcCCchhHHHHHH
Q 030035 2 VVGVLALQG----SFNEHIAALKRLGVKGVEIRKP--------------------DQL--QNVSSLIIPGGESTTMARLA 55 (184)
Q Consensus 2 ~IgVl~~qG----~~~~~~~~L~~~G~~v~~v~~~--------------------~~l--~~~DglIipGG~~~~~~~l~ 55 (184)
||+||..+| ++....+.|++.|+++.++... ++. .++|+|++|||... ..+.
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~~--~~~~ 78 (165)
T cd03134 1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTNP--DKLR 78 (165)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCCh--hhhc
Confidence 689999888 3444567889999988776422 111 25799999999732 2333
Q ss_pred hcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035 56 EYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (184)
Q Consensus 56 ~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~ 88 (184)
.+..+.++|+++.+++++|.+||.|.++|+++.
T Consensus 79 ~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~ag 111 (165)
T cd03134 79 RDPDAVAFVRAFAEAGKPVAAICHGPWVLISAG 111 (165)
T ss_pred cCHHHHHHHHHHHHcCCeEEEEchHHHHHHhcC
Confidence 334578899999999999999999999999863
No 110
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.75 E-value=6.2e-08 Score=76.37 Aligned_cols=84 Identities=24% Similarity=0.362 Sum_probs=62.2
Q ss_pred EEEEEecCC----CHHHHHHHHHHCCCeEEEEcCC----------------------------------CCCC--CCCEE
Q 030035 2 VVGVLALQG----SFNEHIAALKRLGVKGVEIRKP----------------------------------DQLQ--NVSSL 41 (184)
Q Consensus 2 ~IgVl~~qG----~~~~~~~~L~~~G~~v~~v~~~----------------------------------~~l~--~~Dgl 41 (184)
||+||...| ++....+.|++.|+++.++... +++. ++|+|
T Consensus 1 kv~il~~~g~~~~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~l 80 (180)
T cd03169 1 KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDAL 80 (180)
T ss_pred CEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCEE
Confidence 688988877 3444668899999888777311 1122 57999
Q ss_pred EEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHh
Q 030035 42 IIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (184)
Q Consensus 42 IipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~ 87 (184)
++|||.... .+.....+.++|+++.++++||.+||.|.++|+++
T Consensus 81 iv~GG~~~~--~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~a 124 (180)
T cd03169 81 VIPGGRAPE--YLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAA 124 (180)
T ss_pred EEcCCCChh--hhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence 999996432 22222347889999999999999999999999986
No 111
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=98.64 E-value=1.7e-07 Score=92.78 Aligned_cols=117 Identities=22% Similarity=0.175 Sum_probs=80.5
Q ss_pred EEEEEecCCCHHH--HHHHHHHCCCeEEEEc--C---CCCCCCCCEEEEcCCchhH---------HHHHHhcCChHHHHH
Q 030035 2 VVGVLALQGSFNE--HIAALKRLGVKGVEIR--K---PDQLQNVSSLIIPGGESTT---------MARLAEYHNLFPALR 65 (184)
Q Consensus 2 ~IgVl~~qG~~~~--~~~~L~~~G~~v~~v~--~---~~~l~~~DglIipGG~~~~---------~~~l~~~~~l~~~l~ 65 (184)
||+||.++|...+ ...+|+++|+++..|. + ...++++++|+++||++.. ...+..+..+.+.++
T Consensus 931 ~VaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~l~~f~glv~~Ggfsy~D~lgsg~~~a~~il~n~~~~~~~~ 1010 (1202)
T TIGR01739 931 QVAVLLLPGQSVPHGLLAALTNAGFDPRIVSITELKKTDFLDTFSGLIIGGASGTLDSEVGARALAAALLRNQAFLRDLL 1010 (1202)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHcCCceEEEEeccCCCCCchhheEEEEEcCcCCCCccchHHHHHHHHhhcchHHHHHHH
Confidence 7999999997655 6789999999888775 2 1346799999999986421 123333346788899
Q ss_pred HHHH-cCCcEEEEch-HHHHHHHhhhcccCCC-----ccccCcceeeeeecccCceeEEe
Q 030035 66 EFVK-MGKPVWGTCA-GLIFLANKAVGQKLGG-----QELVGGLDCTVHRNFFGSQIQSF 118 (184)
Q Consensus 66 ~~~~-~g~PvlGIC~-G~QlLa~~~~~~~~~~-----~~~LG~ldv~v~rn~~Grqv~sf 118 (184)
+|++ .++++||||. |+|+|++.-.-..... .+.-+-...+..||.-+|-..++
T Consensus 1011 ~f~~r~dtf~LGiCN~G~Q~L~~lg~l~~~~~~~~~~~~~~~~~~~~l~~N~s~~fesr~ 1070 (1202)
T TIGR01739 1011 TFLNRPDTFSLGFGELGCQLLLALNIVGYTQSSPFITVPTEVQEPPRLEKNASGLYESRW 1070 (1202)
T ss_pred HHHhCCCceEEEeCcHHHHHHHHcCCCcCCcccccccccccccCCceeeecCCCCeEEee
Confidence 9995 5999999998 9999998643210000 00112226788899887644443
No 112
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=98.63 E-value=2.5e-07 Score=71.02 Aligned_cols=84 Identities=26% Similarity=0.426 Sum_probs=62.6
Q ss_pred EEEEecCC----CHHHHHHHHHHCCCeEEEEcCC-------------------CCC--CCCCEEEEcCCchhHHHHHHhc
Q 030035 3 VGVLALQG----SFNEHIAALKRLGVKGVEIRKP-------------------DQL--QNVSSLIIPGGESTTMARLAEY 57 (184)
Q Consensus 3 IgVl~~qG----~~~~~~~~L~~~G~~v~~v~~~-------------------~~l--~~~DglIipGG~~~~~~~l~~~ 57 (184)
|+||.++| ++....+.|+..|+++.++... ++. .++|.|++|||.... ..+.+.
T Consensus 1 v~il~~~gf~~~e~~~~~~~~~~a~~~v~~vs~~~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~-~~~~~~ 79 (163)
T cd03135 1 VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGA-QNLADN 79 (163)
T ss_pred CEEEecCCcchHHHHHHHHHHHHCCCEEEEEEcCCCceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchH-HHHHhC
Confidence 57888888 3445678899899887765310 122 579999999997222 233334
Q ss_pred CChHHHHHHHHHcCCcEEEEchHHHHHHHh
Q 030035 58 HNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (184)
Q Consensus 58 ~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~ 87 (184)
..+.++|+++.+++++|.+||.|..+|+++
T Consensus 80 ~~l~~~l~~~~~~~~~i~~ic~g~~~La~a 109 (163)
T cd03135 80 EKLIKLLKEFNAKGKLIAAICAAPAVLAKA 109 (163)
T ss_pred HHHHHHHHHHHHcCCEEEEEchhHHHHHHc
Confidence 458899999999999999999999999986
No 113
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=98.63 E-value=1.1e-07 Score=63.02 Aligned_cols=80 Identities=33% Similarity=0.467 Sum_probs=56.9
Q ss_pred EEEecCCCH----HHHHHHHHHCCCeEEEEcCCC-------CCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCC
Q 030035 4 GVLALQGSF----NEHIAALKRLGVKGVEIRKPD-------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGK 72 (184)
Q Consensus 4 gVl~~qG~~----~~~~~~L~~~G~~v~~v~~~~-------~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~ 72 (184)
+++...+.. ....+.+++.++.+.++.... +..++|++|+|||........ +.....++++++..+++
T Consensus 2 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~-~~~~~~~~~~~~~~~~~ 80 (92)
T cd03128 2 AVLLFGGSEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLA-WDEALLALLREAAAAGK 80 (92)
T ss_pred EEEecCCcEEEeeecHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhc-cCHHHHHHHHHHHHcCC
Confidence 455555443 467788999999888875322 256899999999875542211 11236778888888899
Q ss_pred cEEEEchHHHHH
Q 030035 73 PVWGTCAGLIFL 84 (184)
Q Consensus 73 PvlGIC~G~QlL 84 (184)
|++|+|.|+|++
T Consensus 81 ~i~~~~~g~~~~ 92 (92)
T cd03128 81 PVLGICLGAQLL 92 (92)
T ss_pred EEEEEecccccC
Confidence 999999999874
No 114
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=98.61 E-value=7.2e-08 Score=85.41 Aligned_cols=81 Identities=19% Similarity=0.329 Sum_probs=56.8
Q ss_pred EEEEEe----cCCCHHHHHHHHHHCC------CeEEEEcCC------------------CCCCCCCEEEEcCCchhHHHH
Q 030035 2 VVGVLA----LQGSFNEHIAALKRLG------VKGVEIRKP------------------DQLQNVSSLIIPGGESTTMAR 53 (184)
Q Consensus 2 ~IgVl~----~qG~~~~~~~~L~~~G------~~v~~v~~~------------------~~l~~~DglIipGG~~~~~~~ 53 (184)
+|+++. +...|.++.++|+.+. .++.++... +.+.++||+++|||++.. -
T Consensus 300 ~IalVGKYt~l~DsY~Sv~KAL~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~adGilvPGGFG~R--G 377 (585)
T KOG2387|consen 300 RIALVGKYTKLSDSYLSVVKALEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSADGILVPGGFGDR--G 377 (585)
T ss_pred EEEEEeccccchHHHHHHHHHHHHHHHHhcccceEEEEehhcccccccccChhHHHHHHHHhccCCeEEeCCccccc--c
Confidence 566654 4567888999998754 345555321 125679999999998653 0
Q ss_pred HHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHh
Q 030035 54 LAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (184)
Q Consensus 54 l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~ 87 (184)
. .++...++.+.++++|.||||+|||+-.-.
T Consensus 378 v---eG~i~Aak~ARen~iP~LGiCLGmQ~AvIE 408 (585)
T KOG2387|consen 378 V---EGKILAAKWARENKIPFLGICLGMQLAVIE 408 (585)
T ss_pred h---hHHHHHHHHHHhcCCCeEeeehhhhHHHHH
Confidence 0 245666777777899999999999986643
No 115
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=98.60 E-value=2.3e-07 Score=68.77 Aligned_cols=47 Identities=28% Similarity=0.491 Sum_probs=40.1
Q ss_pred CCCCEEEEcCCc-hhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHH
Q 030035 36 QNVSSLIIPGGE-STTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFL 84 (184)
Q Consensus 36 ~~~DglIipGG~-~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlL 84 (184)
.++|.||+|||. ...|..|... + .+.|++++++|+|+||||+|.-+-
T Consensus 43 ~~ad~lVlPGGa~~~~~~~L~~~-g-~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 43 SKTALLVVPGGADLPYCRALNGK-G-NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred hCCCEEEECCCChHHHHHHHHhh-C-cHHHHHHHHCCCcEEEEecCccce
Confidence 489999999984 5667777764 5 899999999999999999998775
No 116
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=98.58 E-value=7.3e-07 Score=72.17 Aligned_cols=107 Identities=21% Similarity=0.196 Sum_probs=74.7
Q ss_pred EEEEEecCC-----CHHHHHHHHHHCCCeEEEEcCC---------CCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHH
Q 030035 2 VVGVLALQG-----SFNEHIAALKRLGVKGVEIRKP---------DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREF 67 (184)
Q Consensus 2 ~IgVl~~qG-----~~~~~~~~L~~~G~~v~~v~~~---------~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~ 67 (184)
||.++.... .+..+.+++++.|++++.+... +.|.++|+|+++||....+-+..+..++.+.|++.
T Consensus 31 ~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~~ 110 (210)
T cd03129 31 RVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAILKR 110 (210)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHHHHH
Confidence 566665443 3555778899999987755321 23679999999999755543333334577788888
Q ss_pred HHcCCcEEEEchHHHHHHHh--hhcccCC-----CccccCcceeeeee
Q 030035 68 VKMGKPVWGTCAGLIFLANK--AVGQKLG-----GQELVGGLDCTVHR 108 (184)
Q Consensus 68 ~~~g~PvlGIC~G~QlLa~~--~~~~~~~-----~~~~LG~ldv~v~r 108 (184)
+++|+|+.|+|+|.+++++. ...+..+ ...+||+++..+.-
T Consensus 111 ~~~G~v~~G~SAGA~~~~~~~~~~~~~~~~~~~~~~~GLgl~~~~i~p 158 (210)
T cd03129 111 VARGVVIGGTSAGAAVMGETGIGTTPSEPEVTPPMAPGLGLLPGIIDP 158 (210)
T ss_pred HHcCCeEEEcCHHHHHhhhccccCCCCccccccccccCCCCcceeECC
Confidence 88999999999999999996 2221111 35689999877654
No 117
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=98.56 E-value=4.5e-07 Score=74.11 Aligned_cols=76 Identities=24% Similarity=0.349 Sum_probs=55.6
Q ss_pred HHHHHHHHHCCCeEEEEcCC---------------------------------C---C--CCCCCEEEEcCCchhH--HH
Q 030035 13 NEHIAALKRLGVKGVEIRKP---------------------------------D---Q--LQNVSSLIIPGGESTT--MA 52 (184)
Q Consensus 13 ~~~~~~L~~~G~~v~~v~~~---------------------------------~---~--l~~~DglIipGG~~~~--~~ 52 (184)
....+.|++.|++++++... . + +++||+|+||||.+.. +.
T Consensus 20 ~~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~~~~l~ 99 (213)
T cd03133 20 VLTLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGAAKNLS 99 (213)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCchhhhhh
Confidence 34568899999998876420 0 1 2369999999996431 21
Q ss_pred HHH-------hcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035 53 RLA-------EYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (184)
Q Consensus 53 ~l~-------~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~ 88 (184)
.+. .+..+.+.++++.++||||.+||.|.++|+++.
T Consensus 100 D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~ 142 (213)
T cd03133 100 DFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKIL 142 (213)
T ss_pred hhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHh
Confidence 111 223478899999999999999999999999865
No 118
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.54 E-value=2.8e-07 Score=72.64 Aligned_cols=84 Identities=24% Similarity=0.348 Sum_probs=61.5
Q ss_pred EEEEecCC----CHHHHHHHHHHCC-------CeEEEEcCC------------------CCCCCCCEEEEcCCchhHHHH
Q 030035 3 VGVLALQG----SFNEHIAALKRLG-------VKGVEIRKP------------------DQLQNVSSLIIPGGESTTMAR 53 (184)
Q Consensus 3 IgVl~~qG----~~~~~~~~L~~~G-------~~v~~v~~~------------------~~l~~~DglIipGG~~~~~~~ 53 (184)
|++|.++| ++....+.|+.++ +++.++... ++..++|.|++|||.... .
T Consensus 1 i~ill~~gf~~~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~~v~~~~g~~v~~d~~~~~~~~~D~liipGg~~~~--~ 78 (187)
T cd03137 1 VAVLVFPGVSLLDLSGPAEVFGEANRALGPPAYELRVCSPEGGPVRSSSGLSLVADAGLDALAAADTVIVPGGPDVD--G 78 (187)
T ss_pred CEEEEeCCCChhHHhHHHHHHHHHHhhcCCCCeEEEEEeCCCCceeecCCcEEEcCcCccccCCCCEEEECCCcccc--c
Confidence 57888887 4555667787765 666665311 134579999999986432 1
Q ss_pred HHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035 54 LAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (184)
Q Consensus 54 l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~ 88 (184)
+.+...+.++|+++.+++++|.+||.|.++|+++.
T Consensus 79 ~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aG 113 (187)
T cd03137 79 RPPPPALLAALRRAAARGARVASVCTGAFVLAEAG 113 (187)
T ss_pred ccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHcc
Confidence 23334578899999999999999999999999874
No 119
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=98.53 E-value=1e-06 Score=70.24 Aligned_cols=85 Identities=20% Similarity=0.248 Sum_probs=61.6
Q ss_pred CEEEEEecCC----CHHHHHHHHHHCCCeEEEEcC------C---------------CCC--CCCCEEEEcCCchhHHHH
Q 030035 1 MVVGVLALQG----SFNEHIAALKRLGVKGVEIRK------P---------------DQL--QNVSSLIIPGGESTTMAR 53 (184)
Q Consensus 1 m~IgVl~~qG----~~~~~~~~L~~~G~~v~~v~~------~---------------~~l--~~~DglIipGG~~~~~~~ 53 (184)
|||.||..+| ++....+.|++.|+++.++.. + +++ +++|.|++|||.... ..
T Consensus 3 ~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~-~~ 81 (196)
T PRK11574 3 ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGA-EC 81 (196)
T ss_pred ceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchh-hh
Confidence 5899999988 456677889998887766421 0 122 368999999986322 12
Q ss_pred HHhcCChHHHHHHHHHcCCcEEEEchHHHHHHH
Q 030035 54 LAEYHNLFPALREFVKMGKPVWGTCAGLIFLAN 86 (184)
Q Consensus 54 l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~ 86 (184)
+.....+.++|+++.++|++|.+||.|..+|..
T Consensus 82 ~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~ 114 (196)
T PRK11574 82 FRDSPLLVETVRQFHRSGRIVAAICAAPATVLV 114 (196)
T ss_pred hhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHH
Confidence 233234789999999999999999999986543
No 120
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=98.52 E-value=6.9e-07 Score=69.84 Aligned_cols=86 Identities=24% Similarity=0.353 Sum_probs=62.3
Q ss_pred EEEEEecCC----CHHHHHHHHHHCCCeEEE--EcC----C---------------CC--CCCCCEEEEcCCchhHHHHH
Q 030035 2 VVGVLALQG----SFNEHIAALKRLGVKGVE--IRK----P---------------DQ--LQNVSSLIIPGGESTTMARL 54 (184)
Q Consensus 2 ~IgVl~~qG----~~~~~~~~L~~~G~~v~~--v~~----~---------------~~--l~~~DglIipGG~~~~~~~l 54 (184)
||+||.++| ++....+.|+..|.++.+ +.. + ++ ..++|.|+||||.... ..+
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~-~~~ 79 (179)
T TIGR01383 1 KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGA-ENL 79 (179)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHH-HHH
Confidence 689999988 344466788888866553 321 1 12 3468999999995322 123
Q ss_pred HhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035 55 AEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (184)
Q Consensus 55 ~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~ 88 (184)
.....+.++|+++.+++++|.+||.|..+|+++.
T Consensus 80 ~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~aG 113 (179)
T TIGR01383 80 RNSKLLLNILKKQESKGKLVAAICAAPAVLLAAG 113 (179)
T ss_pred hhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhcC
Confidence 3333478999999999999999999999999974
No 121
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=98.52 E-value=5.2e-07 Score=85.97 Aligned_cols=80 Identities=23% Similarity=0.324 Sum_probs=60.3
Q ss_pred cCCCHHHHHHHHHHCCCeEEEEcCCCCC--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHH
Q 030035 8 LQGSFNEHIAALKRLGVKGVEIRKPDQL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLA 85 (184)
Q Consensus 8 ~qG~~~~~~~~L~~~G~~v~~v~~~~~l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa 85 (184)
..|--...++.|.++|+++.++.-.-++ .++|||+|.+|+++. .+.. .+.+.+++.++.++|++|||.|||+||
T Consensus 179 DcG~K~N~IRcL~~RGa~vtVvPw~~~i~~~~yDGlflSNGPGdP--e~~~--~~v~~vr~lL~~~~PvfGIClGHQllA 254 (1435)
T KOG0370|consen 179 DCGLKYNQIRCLVKRGAEVTVVPWDYPIAKEEYDGLFLSNGPGDP--ELCP--LLVQNVRELLESNVPVFGICLGHQLLA 254 (1435)
T ss_pred ccCchHHHHHHHHHhCceEEEecCCccccccccceEEEeCCCCCc--hhhH--HHHHHHHHHHhCCCCeEEEehhhHHHH
Confidence 3566677789999999999999644333 389999999987543 1111 145567777777899999999999999
Q ss_pred Hhhhcc
Q 030035 86 NKAVGQ 91 (184)
Q Consensus 86 ~~~~~~ 91 (184)
.+.+.+
T Consensus 255 ~AaGak 260 (1435)
T KOG0370|consen 255 LAAGAK 260 (1435)
T ss_pred HhhCCc
Confidence 998753
No 122
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.47 E-value=4.5e-07 Score=71.03 Aligned_cols=84 Identities=23% Similarity=0.366 Sum_probs=62.5
Q ss_pred EEEEecCC----CHHHHHHHHHHCC-----CeEEEEcCC------------------CCCCCCCEEEEcCCchhHHHHHH
Q 030035 3 VGVLALQG----SFNEHIAALKRLG-----VKGVEIRKP------------------DQLQNVSSLIIPGGESTTMARLA 55 (184)
Q Consensus 3 IgVl~~qG----~~~~~~~~L~~~G-----~~v~~v~~~------------------~~l~~~DglIipGG~~~~~~~l~ 55 (184)
|+||.++| ++....+.|+.++ +++.++... ++..++|.|++|||.... .+.
T Consensus 1 i~ill~~gf~~~~~~~~~d~~~~a~~~~~~~~v~~vs~~~~~v~~~~g~~i~~d~~~~~~~~~D~lvipgg~~~~--~~~ 78 (183)
T cd03139 1 VGILLFPGVEVLDVIGPYEVFGRAPRLAAPFEVFLVSETGGPVSSRSGLTVLPDTSFADPPDLDVLLVPGGGGTR--ALV 78 (183)
T ss_pred CEEEEeCCCCEehheeHHHHHHHhhccCCCEEEEEEECCCCceEeCCCCEEcCCcccccCCCCCEEEECCCcchh--hhc
Confidence 57888887 4555678888887 787776411 123479999999996432 233
Q ss_pred hcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035 56 EYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (184)
Q Consensus 56 ~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~ 88 (184)
.+..+.++|+++.+++++|.++|.|..+|+++.
T Consensus 79 ~~~~~~~~l~~~~~~~k~i~aic~g~~~La~ag 111 (183)
T cd03139 79 NDPALLDFIRRQAARAKYVTSVCTGALLLAAAG 111 (183)
T ss_pred cCHHHHHHHHHhcccCCEEEEEchHHHHHHhcC
Confidence 334578899999999999999999999999864
No 123
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.46 E-value=1.2e-06 Score=69.52 Aligned_cols=55 Identities=25% Similarity=0.365 Sum_probs=42.6
Q ss_pred CCCCCCEEEEcCCchhHHH-HHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035 34 QLQNVSSLIIPGGESTTMA-RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (184)
Q Consensus 34 ~l~~~DglIipGG~~~~~~-~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~ 88 (184)
+.+++|.|+||||...... .+..+..+.++|+++.+++++|.+||.|..+|+++.
T Consensus 66 ~~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ag 121 (195)
T cd03138 66 DVPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEAG 121 (195)
T ss_pred ccCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHcc
Confidence 3468999999998543211 233334578999999999999999999999999864
No 124
>PRK04155 chaperone protein HchA; Provisional
Probab=98.45 E-value=1.8e-06 Score=73.62 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=43.1
Q ss_pred CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035 36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (184)
Q Consensus 36 ~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~ 88 (184)
++||+|+||||.... ..|..+..+.+.|+++.+++|||.+||.|.++|..+-
T Consensus 146 ~dYDaV~iPGG~g~~-~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a~ 197 (287)
T PRK04155 146 SDYAAVFIPGGHGAL-IGLPESEDVAAALQWALDNDRFIITLCHGPAALLAAG 197 (287)
T ss_pred ccccEEEECCCCchH-HHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHcC
Confidence 589999999997543 4566666688999999999999999999999877753
No 125
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=98.44 E-value=7.3e-07 Score=73.69 Aligned_cols=51 Identities=24% Similarity=0.330 Sum_probs=42.1
Q ss_pred CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHh
Q 030035 36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (184)
Q Consensus 36 ~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~ 87 (184)
++||+|+||||.... ..+.++..+.+.|+++.++||||.+||.|.++|+.+
T Consensus 93 ~dYDav~iPGG~g~~-~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 93 DDYGIFFVAGGHGTL-FDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred hhCcEEEECCCCchh-hhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 479999999997543 234444457889999999999999999999999886
No 126
>PRK11249 katE hydroperoxidase II; Provisional
Probab=98.35 E-value=2.7e-06 Score=80.51 Aligned_cols=88 Identities=24% Similarity=0.207 Sum_probs=67.1
Q ss_pred CEEEEEecCCC----HHHHHHHHHHCCCeEEEEcCC------------------CCC--CCCCEEEEcCCchhHHHHHHh
Q 030035 1 MVVGVLALQGS----FNEHIAALKRLGVKGVEIRKP------------------DQL--QNVSSLIIPGGESTTMARLAE 56 (184)
Q Consensus 1 m~IgVl~~qG~----~~~~~~~L~~~G~~v~~v~~~------------------~~l--~~~DglIipGG~~~~~~~l~~ 56 (184)
+||+||+..|- +..+.++|++.|+++.++... ++. ..+|+|+||||.... ..+..
T Consensus 598 RKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~-~~L~~ 676 (752)
T PRK11249 598 RKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANI-ADLAD 676 (752)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchhH-HHHhh
Confidence 58999999883 455778899999988877421 111 258999999996432 24444
Q ss_pred cCChHHHHHHHHHcCCcEEEEchHHHHHHHhhh
Q 030035 57 YHNLFPALREFVKMGKPVWGTCAGLIFLANKAV 89 (184)
Q Consensus 57 ~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~~ 89 (184)
...+.++|+++.+.+|+|.+||.|.++|+.+..
T Consensus 677 d~~al~fL~eaykHgK~IAAiCaG~~LLaaAGL 709 (752)
T PRK11249 677 NGDARYYLLEAYKHLKPIALAGDARKLKAALKL 709 (752)
T ss_pred CHHHHHHHHHHHHcCCEEEEeCccHHHHHhcCC
Confidence 445789999999999999999999999998643
No 127
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.35 E-value=1.5e-06 Score=67.99 Aligned_cols=83 Identities=28% Similarity=0.364 Sum_probs=58.3
Q ss_pred EEEEecCC----CHHHHHHHHHHC-CCeEEEEcC------------------CCCC--CCCCEEEEcCCchhHHHHHHhc
Q 030035 3 VGVLALQG----SFNEHIAALKRL-GVKGVEIRK------------------PDQL--QNVSSLIIPGGESTTMARLAEY 57 (184)
Q Consensus 3 IgVl~~qG----~~~~~~~~L~~~-G~~v~~v~~------------------~~~l--~~~DglIipGG~~~~~~~l~~~ 57 (184)
|+|+.+.| ++....+.|++. ++++.++.. .+++ .++|.|+||||..... . ..
T Consensus 1 ~~v~~~~~f~~~e~~~~~~~l~~~~~~~~~~~s~~~~~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~~~~~--~-~~ 77 (170)
T cd03140 1 IAVFLTDEFADWEGAYLAALLNSYEGFEVRTVSPTGEPVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGDSWDN--P-EA 77 (170)
T ss_pred CEEEeccchhhhHHHHHHHHhcccCCcEEEEEeCCCCeeEecCCeEEccccchhHCCHhHccEEEEcCCccccc--C-Cc
Confidence 46777766 344456778775 667665531 1233 4689999999964221 1 12
Q ss_pred CChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035 58 HNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (184)
Q Consensus 58 ~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~ 88 (184)
..+.++|+++.++++++.+||.|.++|+++.
T Consensus 78 ~~l~~~l~~~~~~~~~i~aic~G~~~La~aG 108 (170)
T cd03140 78 PDLAGLVRQALKQGKPVAAICGATLALARAG 108 (170)
T ss_pred HHHHHHHHHHHHcCCEEEEEChHHHHHHHCC
Confidence 2478899999999999999999999999974
No 128
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=98.31 E-value=2.3e-06 Score=67.48 Aligned_cols=51 Identities=24% Similarity=0.281 Sum_probs=41.2
Q ss_pred CCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035 35 LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (184)
Q Consensus 35 l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~ 88 (184)
..++|.||+|||.... +..+..+.++|+++.++++.|.++|.|..+|+++.
T Consensus 62 ~~~~D~liipgg~~~~---~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~aG 112 (185)
T cd03136 62 APPLDYLFVVGGLGAR---RAVTPALLAWLRRAARRGVALGGIDTGAFLLARAG 112 (185)
T ss_pred cCCCCEEEEeCCCCcc---ccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHcc
Confidence 4579999999986433 23334578999999999999999999999999863
No 129
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=98.28 E-value=2.6e-06 Score=70.43 Aligned_cols=51 Identities=22% Similarity=0.366 Sum_probs=41.9
Q ss_pred CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHh
Q 030035 36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK 87 (184)
Q Consensus 36 ~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~ 87 (184)
++||+|++|||... +..|..+..+.+.++++.++||||.+||.|.+.|..+
T Consensus 95 ~dYDav~iPGG~g~-~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a 145 (232)
T cd03148 95 SEYAAVFIPGGHGA-LIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA 145 (232)
T ss_pred hhceEEEECCCCCC-hhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence 47999999999643 3345555567889999999999999999999988775
No 130
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=98.14 E-value=1.3e-06 Score=66.73 Aligned_cols=52 Identities=33% Similarity=0.638 Sum_probs=40.4
Q ss_pred CCCCEEEEcCCchhHHHHHH-hcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035 36 QNVSSLIIPGGESTTMARLA-EYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (184)
Q Consensus 36 ~~~DglIipGG~~~~~~~l~-~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~ 88 (184)
.+||+||||||.... ..|. ++..+.++++++.+++|||.+||.|..+|+++-
T Consensus 36 ~~yDalilpGG~~~~-~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~g 88 (147)
T PF01965_consen 36 SDYDALILPGGHGGA-DDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAAG 88 (147)
T ss_dssp GGESEEEEE-BTHHH-HHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHTT
T ss_pred hhCCEEEECCCCchh-hhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhccC
Confidence 479999999997633 2444 213588899999999999999999999999874
No 131
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=98.14 E-value=6.4e-06 Score=63.59 Aligned_cols=94 Identities=21% Similarity=0.345 Sum_probs=63.2
Q ss_pred HHHHHHHHHCCCeEEEEcCCC--------CCCCCCEEEEcCCchhHH-HHHHhcCChHHHHHHHHHcCCcEEEEchHHHH
Q 030035 13 NEHIAALKRLGVKGVEIRKPD--------QLQNVSSLIIPGGESTTM-ARLAEYHNLFPALREFVKMGKPVWGTCAGLIF 83 (184)
Q Consensus 13 ~~~~~~L~~~G~~v~~v~~~~--------~l~~~DglIipGG~~~~~-~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~Ql 83 (184)
....++|+++|+++..+...+ .|.++|+|++.||....+ ..+.. .++.+.|++++++|+++.|+-+|..+
T Consensus 3 ~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~-t~l~~~i~~~~~~G~vi~G~SAGA~i 81 (154)
T PF03575_consen 3 EKFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGDTFRLLRQLKE-TGLDEAIREAYRKGGVIIGTSAGAMI 81 (154)
T ss_dssp HHHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S-HHHHHHHHHH-TTHHHHHHHHHHTTSEEEEETHHHHC
T ss_pred HHHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCCHHHHHHHHHh-CCHHHHHHHHHHCCCEEEEEChHHhh
Confidence 456788999999988776332 256899999999965554 44444 68999999999999999999999999
Q ss_pred HHHhhhcccC-C-----CccccCcceeeee
Q 030035 84 LANKAVGQKL-G-----GQELVGGLDCTVH 107 (184)
Q Consensus 84 La~~~~~~~~-~-----~~~~LG~ldv~v~ 107 (184)
++..+..... . ...+||+++..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~gLgl~~~~i~ 111 (154)
T PF03575_consen 82 LGPSIETDSDSDDVELTNYDGLGLLPFVII 111 (154)
T ss_dssp TSSBSCCGTTCCGCCECESB---SSSSEEE
T ss_pred ccCceeecCcCCcccCCCCCcCCCCCCEeE
Confidence 8776643221 1 1247777775543
No 132
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=2.8e-05 Score=63.46 Aligned_cols=155 Identities=19% Similarity=0.225 Sum_probs=99.6
Q ss_pred CEEEEEecCCC----HHHHHHHHHHCC---CeEEEEc------CCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHH
Q 030035 1 MVVGVLALQGS----FNEHIAALKRLG---VKGVEIR------KPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREF 67 (184)
Q Consensus 1 m~IgVl~~qG~----~~~~~~~L~~~G---~~v~~v~------~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~ 67 (184)
|+|-|-.-.|. +...++.|+..- ..+..|. .+ ..+....||+|||.+..+....+. --...|..+
T Consensus 1 m~VlVYn~~GvSp~~lkhtv~sLr~~~~p~y~v~~V~~~~Li~Ep-W~~~T~lLV~pGGaDlpY~~~l~g-~g~a~i~~y 78 (253)
T COG4285 1 MNVLVYNGLGVSPYSLKHTVRSLRLFAPPYYAVDRVDAQFLIKEP-WEETTLLLVFPGGADLPYVQVLQG-LGTARIKNY 78 (253)
T ss_pred CceEEeCCCCCChHHHHHHHHHHHhhccchheEEEeeeheeecCc-chhceEEEEecCCCCchHHHHhcc-hhhhhHHHH
Confidence 67777665553 333445555532 2333332 22 335677899999986665443332 124578899
Q ss_pred HHcCCcEEEEchHHHHHHHhhhcccCC-----CccccCcceeeeeecccCceeEEee-------ccccCCccccCCCCCc
Q 030035 68 VKMGKPVWGTCAGLIFLANKAVGQKLG-----GQELVGGLDCTVHRNFFGSQIQSFE-------AELSVPALASQEGGPE 135 (184)
Q Consensus 68 ~~~g~PvlGIC~G~QlLa~~~~~~~~~-----~~~~LG~ldv~v~rn~~Grqv~sf~-------~~~~~~~~~~~~~~~~ 135 (184)
+++|.-.||||+|.-.=+..++..+.. ..+.|++++++++--.|.+ -++. +.+.++.+ +.
T Consensus 79 vk~GG~fLGiCAG~YFg~~~veF~~p~~~~vvgkRdL~fFpGT~~GP~y~g--F~Y~S~~GaRaa~l~~~d~------~~ 150 (253)
T COG4285 79 VKEGGNFLGICAGGYFGSAYVEFAEPTGIEVVGKRDLGFFPGTARGPAYAG--FSYNSESGARAAPLKFNDF------LG 150 (253)
T ss_pred HhcCCeEEEEeccccccceEEEEecCCCceeeecccccccCCccCCCccCC--ccccCcccceeeeeeeCCC------cc
Confidence 999999999999987766655533221 3467999999887655543 2222 23344433 23
Q ss_pred ceeEeeecCceEEec--CCCcEEEEecCCCCc
Q 030035 136 TFRGVFIRAPAVLDV--GPDVDVLADYPVPSN 165 (184)
Q Consensus 136 ~~~a~firap~i~~~--~~~v~vLa~~~~~~~ 165 (184)
.+.+.|...-++.+. -++|+|+|+|++.+.
T Consensus 151 ~~~~~FNGG~~F~~aE~~~~v~I~ArY~e~~~ 182 (253)
T COG4285 151 DCYAYFNGGGYFEDAENYPNVEIEARYEELPG 182 (253)
T ss_pred ceEEEEcCceEEeccCCCCCcEEEEehhcCCC
Confidence 678899999888887 378999999998753
No 133
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=98.07 E-value=7.8e-06 Score=66.86 Aligned_cols=52 Identities=33% Similarity=0.496 Sum_probs=41.3
Q ss_pred CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035 36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (184)
Q Consensus 36 ~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~ 88 (184)
+++|+|+||||.... ..+.....+.++|+++.+++++|.+||.|.++|+++.
T Consensus 89 ~~~dal~ipGG~~~~-~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ag 140 (221)
T cd03141 89 SDYDAIFIPGGHGPM-FDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNVK 140 (221)
T ss_pred hHceEEEECCCcccc-cccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhcc
Confidence 368999999996432 1233334578999999999999999999999999874
No 134
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=98.04 E-value=1.6e-05 Score=61.56 Aligned_cols=54 Identities=26% Similarity=0.435 Sum_probs=40.9
Q ss_pred CCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035 33 DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (184)
Q Consensus 33 ~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~ 88 (184)
++..++|.||+|||.... .......+.++|++..++++++.++|.|..+|+++.
T Consensus 57 ~~~~~~D~lvvpg~~~~~--~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~aG 110 (166)
T PF13278_consen 57 DDAPDFDILVVPGGPGFD--AAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEAG 110 (166)
T ss_dssp CCCSCCSEEEEE-STTHH--HHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHTT
T ss_pred hhcccCCEEEeCCCCCch--hcccCHHHHHHhhhhhccceEEeeeehHHHHHhhhh
Confidence 345689999999997722 222223478889998889999999999999999974
No 135
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=98.00 E-value=3.2e-05 Score=63.61 Aligned_cols=72 Identities=24% Similarity=0.334 Sum_probs=52.8
Q ss_pred HHHHHHHCCCeEEEEcCC-------------------CC--CCCCCEEEEcCC-chhHHHHHHhcCChHHHHHHHHHcCC
Q 030035 15 HIAALKRLGVKGVEIRKP-------------------DQ--LQNVSSLIIPGG-ESTTMARLAEYHNLFPALREFVKMGK 72 (184)
Q Consensus 15 ~~~~L~~~G~~v~~v~~~-------------------~~--l~~~DglIipGG-~~~~~~~l~~~~~l~~~l~~~~~~g~ 72 (184)
.++.|++.|+++.++... .| -+.||.+||||| .... .|.......+.++++.+.|+
T Consensus 24 p~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e--~L~~~~~v~~lvK~q~~~gk 101 (247)
T KOG2764|consen 24 PIDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAE--TLSECEKVVDLVKEQAESGK 101 (247)
T ss_pred eHHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhh--hhhhcHHHHHHHHHHHhcCC
Confidence 367899999999887411 11 157999999999 4433 44444446788999999999
Q ss_pred cEEEEchHH-HHHHHhh
Q 030035 73 PVWGTCAGL-IFLANKA 88 (184)
Q Consensus 73 PvlGIC~G~-QlLa~~~ 88 (184)
+|..||+|. .+|+...
T Consensus 102 LIaaICaap~~al~a~g 118 (247)
T KOG2764|consen 102 LIAAICAAPLTALAAHG 118 (247)
T ss_pred eEEEeecchHHHHhhcc
Confidence 999999998 5555544
No 136
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=97.93 E-value=5.2e-05 Score=64.93 Aligned_cols=85 Identities=22% Similarity=0.330 Sum_probs=58.3
Q ss_pred EEEEEecCC----CHHHHHHHHHHC----C---CeEEEEcC------------------CCCCCCCCEEEEcCCchhHHH
Q 030035 2 VVGVLALQG----SFNEHIAALKRL----G---VKGVEIRK------------------PDQLQNVSSLIIPGGESTTMA 52 (184)
Q Consensus 2 ~IgVl~~qG----~~~~~~~~L~~~----G---~~v~~v~~------------------~~~l~~~DglIipGG~~~~~~ 52 (184)
+|+|+.+.| ++....+.|+.+ + +++.++.. .++.+++|.||+|||.....
T Consensus 11 ~v~ill~~gf~~~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~~~v~ss~g~~i~~d~~~~~~~~~D~livpGg~~~~~- 89 (322)
T PRK09393 11 LVVALAYDGLCTFEFGCAVEIFGLPRPELGVDWYRFAVAAVEPGPLRAAGGITVVADGGLELLDRADTIVIPGWRGPDA- 89 (322)
T ss_pred EEEEEEcCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEECCCCceEeCCCcEEeCCCCccccCCCCEEEECCCCcccc-
Confidence 799999998 344455555332 1 23443321 12356899999999854321
Q ss_pred HHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhhh
Q 030035 53 RLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAV 89 (184)
Q Consensus 53 ~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~~ 89 (184)
.....+.++|+++.+++++|.+||.|..+|+++..
T Consensus 90 --~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGl 124 (322)
T PRK09393 90 --PVPEPLLEALRAAHARGARLCSICSGVFVLAAAGL 124 (322)
T ss_pred --cCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhccC
Confidence 12234788999999999999999999999998753
No 137
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.00016 Score=65.88 Aligned_cols=108 Identities=17% Similarity=0.278 Sum_probs=62.0
Q ss_pred CCCCEEEE-cC-CchhHHHHHHhcCCh-HHHHHHHHHcCCcEEEEchHHHHHHHhhhcccCCCccccCcceeeeeec-cc
Q 030035 36 QNVSSLII-PG-GESTTMARLAEYHNL-FPALREFVKMGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRN-FF 111 (184)
Q Consensus 36 ~~~DglIi-pG-G~~~~~~~l~~~~~l-~~~l~~~~~~g~PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn-~~ 111 (184)
..+|+|++ || |.+...... +. .+.+.++ +.+||+|||+|+|.|+-.-+. ++. .-| +.
T Consensus 63 ~~FDaIVVgPGPG~P~~a~d~----gI~~rl~~~~--~~iPilGICLGfQal~l~hGA------------~v~-~~n~p~ 123 (767)
T KOG1224|consen 63 VAFDAIVVGPGPGSPMCAADI----GICLRLLLEC--RDIPILGICLGFQALGLVHGA------------HVV-HANEPV 123 (767)
T ss_pred cccceEEecCCCCCCCcHHHH----HHHHHHHHhc--CCCceeeeehhhHhHhhhccc------------cee-cCCCcc
Confidence 35899999 44 333211111 11 2222222 369999999999999976532 111 111 33
Q ss_pred CceeEEeecc--ccCCccccCCCCCcceeEeeecCceEEecC-CCcEEEEecCCCC
Q 030035 112 GSQIQSFEAE--LSVPALASQEGGPETFRGVFIRAPAVLDVG-PDVDVLADYPVPS 164 (184)
Q Consensus 112 Grqv~sf~~~--~~~~~~~~~~~~~~~~~a~firap~i~~~~-~~v~vLa~~~~~~ 164 (184)
-+|+.+.+.+ ..+-++. .+.|..|+.+=-|+=+|..+| +-+.+|++..+.-
T Consensus 124 HGrvs~i~~~~~~~f~gi~--sg~~~~fK~~RYHSL~in~~pid~l~il~t~~ddn 177 (767)
T KOG1224|consen 124 HGRVSGIEHDGNILFSGIP--SGRNSDFKVVRYHSLIINSLPIDLLPILWTIYDDN 177 (767)
T ss_pred cceeeeEEecCcEEEccCC--CCCcccceeEEeEEEEecCCchhhhcceeEeecCC
Confidence 3566666543 2222332 345567887777777777777 4478888877653
No 138
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=97.68 E-value=0.00042 Score=56.59 Aligned_cols=87 Identities=20% Similarity=0.280 Sum_probs=63.1
Q ss_pred EEEEEecCC-----CHHHHHHHHHHCCCe-EEEEcCC-----------CCCCCCCEEEEcCCchhHHHHHHhcCChHHHH
Q 030035 2 VVGVLALQG-----SFNEHIAALKRLGVK-GVEIRKP-----------DQLQNVSSLIIPGGESTTMARLAEYHNLFPAL 64 (184)
Q Consensus 2 ~IgVl~~qG-----~~~~~~~~L~~~G~~-v~~v~~~-----------~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l 64 (184)
||.++-..+ ...++.+.+++.|++ +..+... +.+.++|+|++.||....+-...+..++.+.|
T Consensus 31 ~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l~~~l 110 (217)
T cd03145 31 RIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPLLDAL 110 (217)
T ss_pred cEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChHHHHH
Confidence 577775543 244466788899984 4444211 12578999999999655443433445788899
Q ss_pred HHHHHcCCcEEEEchHHHHHHHhh
Q 030035 65 REFVKMGKPVWGTCAGLIFLANKA 88 (184)
Q Consensus 65 ~~~~~~g~PvlGIC~G~QlLa~~~ 88 (184)
++.+++|.|+.|+-+|..+++...
T Consensus 111 ~~~~~~G~v~~G~SAGA~i~~~~~ 134 (217)
T cd03145 111 RKVYRGGVVIGGTSAGAAVMSDTM 134 (217)
T ss_pred HHHHHcCCEEEEccHHHHhhhhcc
Confidence 999999999999999999999874
No 139
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=97.55 E-value=0.00025 Score=56.37 Aligned_cols=50 Identities=14% Similarity=0.160 Sum_probs=35.3
Q ss_pred CCCCCEEEEcCCchhHH--------HHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhhhc
Q 030035 35 LQNVSSLIIPGGESTTM--------ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVG 90 (184)
Q Consensus 35 l~~~DglIipGG~~~~~--------~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~~~ 90 (184)
..++||+||+|.....+ +.+.+ +.+|.+ +..+|+|++|.|+|....+..+
T Consensus 60 ~~~yDGlIITGApve~~~fe~v~Yw~El~~---i~dwa~---~~v~stl~iCWgaqaal~~~yG 117 (175)
T cd03131 60 DAKFDGLIVTGAPVEHLPFEQVDYWEELTE---ILDWAK---THVTSTLFSCWAAMAALYYFYG 117 (175)
T ss_pred ccCCCEEEEeCCCcccCCccccchHHHHHH---HHHHHH---HhCcchHHHHHHHHHHHHHHcC
Confidence 46899999999854221 22222 445555 4679999999999998888754
No 140
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=97.54 E-value=0.00013 Score=59.49 Aligned_cols=76 Identities=25% Similarity=0.309 Sum_probs=60.0
Q ss_pred HHHHHHHCCCeEEEEcC---C-CC----CCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHH
Q 030035 15 HIAALKRLGVKGVEIRK---P-DQ----LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLAN 86 (184)
Q Consensus 15 ~~~~L~~~G~~v~~v~~---~-~~----l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~ 86 (184)
..++|++.|+++.-++. + ++ |.+.|.|++.||.--..-.+.++.++.+.||+.+++|+|..|+-+|..+-+.
T Consensus 54 ~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNTF~LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~ia~p 133 (224)
T COG3340 54 VRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNTFNLLQELKETGLDDIIRERVKAGTPYIGWSAGANIAGP 133 (224)
T ss_pred HHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchHHHHHHHHHHhCcHHHHHHHHHcCCceEEeccCceeecC
Confidence 45778999998877642 2 22 4569999999997555445555578999999999999999999999999888
Q ss_pred hhhc
Q 030035 87 KAVG 90 (184)
Q Consensus 87 ~~~~ 90 (184)
.+..
T Consensus 134 ~I~t 137 (224)
T COG3340 134 TIET 137 (224)
T ss_pred ceee
Confidence 7754
No 141
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=97.51 E-value=0.0028 Score=50.09 Aligned_cols=70 Identities=24% Similarity=0.338 Sum_probs=46.7
Q ss_pred HHHHH-HHCCCeEEEEcCCC----CC--CCCCEEEEcCCchhHHHHHHhcCC-hHHHHHHHHHcCCcEEEEchHHHHHHH
Q 030035 15 HIAAL-KRLGVKGVEIRKPD----QL--QNVSSLIIPGGESTTMARLAEYHN-LFPALREFVKMGKPVWGTCAGLIFLAN 86 (184)
Q Consensus 15 ~~~~L-~~~G~~v~~v~~~~----~l--~~~DglIipGG~~~~~~~l~~~~~-l~~~l~~~~~~g~PvlGIC~G~QlLa~ 86 (184)
+.+.| -+.|+.+.+.++.+ +| .+.++|+|+-|+++..+ .+ ..+.++++. ..+|+||+|.|.|.+.+
T Consensus 34 v~qYL~~e~g~~~~VyRNDeiTV~El~~~NP~~LliSPGPG~P~D-----sGIs~~~i~~f~-~~iP~fGvCMGlQCi~e 107 (223)
T KOG0026|consen 34 LCQYLMGELGCHFEVYRNDELTVEELKRKNPRGLLISPGPGTPQD-----SGISLQTVLELG-PLVPLFGVCMGLQCIGE 107 (223)
T ss_pred HHHHhhhccCccEEEEecCcccHHHHhhcCCCeEEecCCCCCCcc-----ccchHHHHHHhC-CCCceeeeehhhhhhhh
Confidence 44666 56788888887542 33 36788888544433211 12 245677663 46899999999999999
Q ss_pred hhhc
Q 030035 87 KAVG 90 (184)
Q Consensus 87 ~~~~ 90 (184)
++++
T Consensus 108 ~fGG 111 (223)
T KOG0026|consen 108 AFGG 111 (223)
T ss_pred hhCc
Confidence 8853
No 142
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=97.34 E-value=0.00098 Score=55.74 Aligned_cols=106 Identities=21% Similarity=0.255 Sum_probs=71.9
Q ss_pred EEEEEecCC-CH----HHHHHHHHHCCCe-EEEEc--CC---------CCCCCCCEEEEcCCchhHHHHHHhcCChHHHH
Q 030035 2 VVGVLALQG-SF----NEHIAALKRLGVK-GVEIR--KP---------DQLQNVSSLIIPGGESTTMARLAEYHNLFPAL 64 (184)
Q Consensus 2 ~IgVl~~qG-~~----~~~~~~L~~~G~~-v~~v~--~~---------~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l 64 (184)
||+++-..+ .. ..+.++|+++|++ +..+. +. +.|.++|+|++.||....+-...+..++.+.|
T Consensus 30 rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l~~~l~~t~l~~~l 109 (250)
T TIGR02069 30 IIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQLRITSLLGDTPLLDRL 109 (250)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHHHHHHcCCcHHHHH
Confidence 677775433 22 2355678889984 44332 11 12578999999999654443333446788899
Q ss_pred HHHHHcCCcEEEEchHHHHHHHhhhccc-------CC---CccccCcceeeee
Q 030035 65 REFVKMGKPVWGTCAGLIFLANKAVGQK-------LG---GQELVGGLDCTVH 107 (184)
Q Consensus 65 ~~~~~~g~PvlGIC~G~QlLa~~~~~~~-------~~---~~~~LG~ldv~v~ 107 (184)
++++++|.|+.|+-+|..+|+....... .. ...+||+++..+.
T Consensus 110 ~~~~~~G~vi~G~SAGA~i~~~~~~~~g~~~~~p~~~~~~~~~GLgll~~~vi 162 (250)
T TIGR02069 110 RKRVHEGIILGGTSAGAAVMSDTMIVGGDSEESPRKETVDMAPGLGLLPNVLI 162 (250)
T ss_pred HHHHHcCCeEEEccHHHHhcccceEecCCCcCCccccceecccCccccCCcee
Confidence 9999999999999999999987763211 01 2357999987654
No 143
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=97.32 E-value=0.00032 Score=58.43 Aligned_cols=85 Identities=22% Similarity=0.414 Sum_probs=54.8
Q ss_pred EEEEecCCCH---------------HHHHHHHHHCCCeEEEEc--CCCC-----CCCCCEEEEcCCchhH--HHHHHhcC
Q 030035 3 VGVLALQGSF---------------NEHIAALKRLGVKGVEIR--KPDQ-----LQNVSSLIIPGGESTT--MARLAEYH 58 (184)
Q Consensus 3 IgVl~~qG~~---------------~~~~~~L~~~G~~v~~v~--~~~~-----l~~~DglIipGG~~~~--~~~l~~~~ 58 (184)
||||.-.|+- .++++.++..|+.|+.+. .+++ ++...|+|+|||.... +-++.+.
T Consensus 55 IGIL~hpg~g~~~rl~n~t~~~yIAASYVK~aEsgGARViPli~nepEe~lfqklelvNGviftGGwak~~dY~~vvkk- 133 (340)
T KOG1559|consen 55 IGILSHPGDGASGRLKNATGRSYIAASYVKLAESGGARVIPLIYNEPEEILFQKLELVNGVIFTGGWAKRGDYFEVVKK- 133 (340)
T ss_pred eEEeccCCCCccceeccccCcchhHHHHHHHHHcCCceEEEEecCCcHHHHHHHHHHhceeEecCcccccccHHHHHHH-
Confidence 8888766531 346677888899988764 3332 4678999999995332 2222221
Q ss_pred ChHHHHHHHHHcC--CcEEEEchHHHHHHHhhh
Q 030035 59 NLFPALREFVKMG--KPVWGTCAGLIFLANKAV 89 (184)
Q Consensus 59 ~l~~~l~~~~~~g--~PvlGIC~G~QlLa~~~~ 89 (184)
++....+..++| -||+|||+|+.+|+--+.
T Consensus 134 -ifnk~le~nDaGehFPvyg~CLGFE~lsmiIS 165 (340)
T KOG1559|consen 134 -IFNKVLERNDAGEHFPVYGICLGFELLSMIIS 165 (340)
T ss_pred -HHHHHHhccCCccccchhhhhhhHHHHHHHHh
Confidence 222222222333 799999999999987664
No 144
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=97.23 E-value=0.0017 Score=62.39 Aligned_cols=113 Identities=21% Similarity=0.239 Sum_probs=74.0
Q ss_pred EEEEEecCCC--HHHHHHHHHHCCCeEEEEcCC------CCCCCCCEEEEcCCchhH--H-------HHHHhcCChHHHH
Q 030035 2 VVGVLALQGS--FNEHIAALKRLGVKGVEIRKP------DQLQNVSSLIIPGGESTT--M-------ARLAEYHNLFPAL 64 (184)
Q Consensus 2 ~IgVl~~qG~--~~~~~~~L~~~G~~v~~v~~~------~~l~~~DglIipGG~~~~--~-------~~l~~~~~l~~~l 64 (184)
||+||--+|. ..|+..++..+|++.+-|.-. -.|+++-||+.+||++.. . ..+.-+.+.....
T Consensus 1060 kVAilREeGvNg~rEMa~af~~AgF~~~DVtmtDlL~G~~~ld~frGlaf~GGFSYaDvLgSakGWAasil~ne~v~~QF 1139 (1320)
T KOG1907|consen 1060 KVAILREEGVNGDREMAAAFYAAGFETVDVTMTDLLAGRHHLDDFRGLAFCGGFSYADVLGSAKGWAASILFNESVRSQF 1139 (1320)
T ss_pred ceEEeeccccccHHHHHHHHHHcCCceeeeeeehhhcCceeHhHhcceeeecCcchHhhhccccchhhheeeChhHHHHH
Confidence 7999999994 677889999999987766421 346789999999997643 1 1111122344444
Q ss_pred HHHHH-cCCcEEEEchHHHHHHHhhhcccCCCccccCcceeeeeecccCceeEEe
Q 030035 65 REFVK-MGKPVWGTCAGLIFLANKAVGQKLGGQELVGGLDCTVHRNFFGSQIQSF 118 (184)
Q Consensus 65 ~~~~~-~g~PvlGIC~G~QlLa~~~~~~~~~~~~~LG~ldv~v~rn~~Grqv~sf 118 (184)
.+|.+ +..--||||.|.|||+.---- + ..-=++.|+...+|.-||--.+|
T Consensus 1140 ~~F~~R~DtFslGiCNGCQlms~Lg~i---~-p~~~~~p~~~l~~Nes~rfE~r~ 1190 (1320)
T KOG1907|consen 1140 EAFFNRQDTFSLGICNGCQLMSRLGWI---G-PEVGKWPDVFLDHNESGRFECRF 1190 (1320)
T ss_pred HHHhcCCCceeeecccHhHHHHHhccc---C-ccccCCCceeeecccccceeeeE
Confidence 55544 467889999999999975321 0 11123456667788766544444
No 145
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=96.55 E-value=0.0076 Score=41.93 Aligned_cols=42 Identities=24% Similarity=0.467 Sum_probs=38.0
Q ss_pred EEEEEecCCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCC
Q 030035 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG 46 (184)
Q Consensus 2 ~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG 46 (184)
|||| .-++.++.++|++.|++++...+..++..+|++|+.|-
T Consensus 3 kIAV---E~~Ls~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~ 44 (80)
T PF03698_consen 3 KIAV---EEGLSNVKEALREKGYEVVDLENEQDLQNVDAIVVTGQ 44 (80)
T ss_pred eEEe---cCCchHHHHHHHHCCCEEEecCCccccCCcCEEEEECC
Confidence 6776 77889999999999999999998888999999999995
No 146
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=96.54 E-value=0.0056 Score=52.37 Aligned_cols=101 Identities=16% Similarity=0.077 Sum_probs=56.8
Q ss_pred CEEEEEecCCCHHHHH----HHHHHCC--CeEEEEcCC-------------------CCC--CCCCEEEEcCCchhHH--
Q 030035 1 MVVGVLALQGSFNEHI----AALKRLG--VKGVEIRKP-------------------DQL--QNVSSLIIPGGESTTM-- 51 (184)
Q Consensus 1 m~IgVl~~qG~~~~~~----~~L~~~G--~~v~~v~~~-------------------~~l--~~~DglIipGG~~~~~-- 51 (184)
+|||||.+-=+-.+.. +.|.... +++..++.. +++ ..+||+||+|.+-..+
T Consensus 36 L~I~ILNLMP~K~~TE~Q~lRlL~ntplqv~i~~~~~~sh~~k~t~~~hl~~fY~~f~~ik~~~fDGlIITGAPvE~l~F 115 (300)
T TIGR01001 36 LEILILNLMPKKIETENQFLRLLSNSPLQVNITLLRTDSRKSKNTPIEHLNKFYTTFEAVKDRKFDGLIITGAPVELVPF 115 (300)
T ss_pred eeEEEEecCCccHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHHhhCHHHHhcCCCCEEEEcCCCcCCCCc
Confidence 4799999866555443 3332222 345554311 223 4799999999753221
Q ss_pred ------HHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHh-hhcccC-CCccccCcceeeee
Q 030035 52 ------ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANK-AVGQKL-GGQELVGGLDCTVH 107 (184)
Q Consensus 52 ------~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~-~~~~~~-~~~~~LG~ldv~v~ 107 (184)
+.|.+ +++|.++ .-...+.||.|.|.-... .+-++. -..+..|++.-++.
T Consensus 116 eeV~YW~El~~---I~dwsk~---~v~Stl~iCWaAqAaLy~~yGI~K~~l~~KlfGVf~h~~~ 173 (300)
T TIGR01001 116 EDVAYWEELTE---IMEWSKH---NVTSTMFICWAAQAGLKYFYGIPKYTLPEKLSGVYKHDIA 173 (300)
T ss_pred ccCCcHHHHHH---HHHHHHH---cCcchHHHHHHHHHHHHHHcCCCccccCCceEEeecCccC
Confidence 22222 3344433 457899999999984444 332222 14567777775554
No 147
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=96.31 E-value=0.016 Score=49.74 Aligned_cols=100 Identities=22% Similarity=0.259 Sum_probs=49.5
Q ss_pred CEEEEEecCCCHHHHHHH-HHHCC-----CeEEEEcCC-------------------CCC--CCCCEEEEcCCchhHH--
Q 030035 1 MVVGVLALQGSFNEHIAA-LKRLG-----VKGVEIRKP-------------------DQL--QNVSSLIIPGGESTTM-- 51 (184)
Q Consensus 1 m~IgVl~~qG~~~~~~~~-L~~~G-----~~v~~v~~~-------------------~~l--~~~DglIipGG~~~~~-- 51 (184)
+|||||.+--+-.+.... ++-++ +++..++.. +++ ..+||+||+|.+-..+
T Consensus 35 L~I~IlNLMP~K~~TE~Q~lrlL~~tplqv~v~f~~~~sh~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITGAPvE~l~F 114 (298)
T PF04204_consen 35 LKIGILNLMPDKEETERQFLRLLSNTPLQVEVTFLYPASHKSKNTSPEHLEKFYKTFDEIKDRKFDGLIITGAPVEQLPF 114 (298)
T ss_dssp EEEEEE---SSHHHHHHHHHHHCCSSSS-EEEEEE--S-----SS-HHHHHHHEE-HHHCTTS-EEEEEE---TTTTS-G
T ss_pred eEEEEEecccchHHHHHHHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeCCCcCCCCc
Confidence 479999987776665533 33333 455554311 233 4799999999753322
Q ss_pred ------HHHHhcCChHHHHHHHHHcCCcEEEEchHHHH-HHHhhhcccCC-CccccCcceeee
Q 030035 52 ------ARLAEYHNLFPALREFVKMGKPVWGTCAGLIF-LANKAVGQKLG-GQELVGGLDCTV 106 (184)
Q Consensus 52 ------~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~Ql-La~~~~~~~~~-~~~~LG~ldv~v 106 (184)
+.+.+ +++|.+ +.-.+.+.||.|.|. |-...+-++.. ..+..|++.-++
T Consensus 115 e~V~YW~El~~---i~dwa~---~~v~stl~iCWgAqAaLy~~yGI~K~~l~~KlfGVf~~~~ 171 (298)
T PF04204_consen 115 EEVDYWDELTE---IFDWAK---THVTSTLFICWGAQAALYHFYGIPKYPLPEKLFGVFEHRV 171 (298)
T ss_dssp GGSTTHHHHHH---HHHHHH---HHEEEEEEETHHHHHHHHHHH----EEEEEEEEEEEEEEE
T ss_pred ccCCcHHHHHH---HHHHHH---HcCCcchhhhHHHHHHHHHHcCCCcccCCCcceeceeeec
Confidence 22222 344444 346899999999998 44444322111 345556555543
No 148
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.30 E-value=0.029 Score=44.29 Aligned_cols=55 Identities=22% Similarity=0.328 Sum_probs=41.3
Q ss_pred CCCCEEEEcCCchhH--HHHHHh-------cCChHHHHHHHHHcCCcEEEEchHHHHHHHhhhc
Q 030035 36 QNVSSLIIPGGESTT--MARLAE-------YHNLFPALREFVKMGKPVWGTCAGLIFLANKAVG 90 (184)
Q Consensus 36 ~~~DglIipGG~~~~--~~~l~~-------~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~~~ 90 (184)
+++|+||+|||++.. ...+.- +.++....+.+.++|||+--||....|+.+-++.
T Consensus 84 e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~ 147 (217)
T COG3155 84 EELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGF 147 (217)
T ss_pred HhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCC
Confidence 578999999998643 212211 2346677888889999999999999999998753
No 149
>PRK03094 hypothetical protein; Provisional
Probab=95.98 E-value=0.022 Score=39.56 Aligned_cols=42 Identities=26% Similarity=0.435 Sum_probs=36.6
Q ss_pred EEEEEecCCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCC
Q 030035 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG 46 (184)
Q Consensus 2 ~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG 46 (184)
|||| .-++..+.++|++.|++++..++..+...+|++|++|-
T Consensus 3 kIaV---E~~Ls~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~ 44 (80)
T PRK03094 3 KIGV---EQSLTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQ 44 (80)
T ss_pred eEEe---ecCcHHHHHHHHHCCCEEEecCcccccCCcCEEEEeCC
Confidence 5776 66788889999999999999988777889999999994
No 150
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=95.80 E-value=0.0056 Score=51.19 Aligned_cols=80 Identities=21% Similarity=0.281 Sum_probs=57.8
Q ss_pred CCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhhhccc----CC------CccccCccee
Q 030035 35 LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQK----LG------GQELVGGLDC 104 (184)
Q Consensus 35 l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~~~~~----~~------~~~~LG~ldv 104 (184)
+.++++|++.||....+-...++..+.+.|++.+..|.-+-|+.+|..+|+....... ++ .-.+||+++.
T Consensus 104 v~~a~gIfftGGDQ~ri~~~lkdTpl~~~ir~r~r~G~avgGTSAGAavM~~~mi~~g~s~~~pn~~~v~m~~glg~lp~ 183 (293)
T COG4242 104 VENATGIFFTGGDQLRIIGSLKDTPLMAAIRQRVRRGIAVGGTSAGAAVMSDHMIVAGDSGEYPNRELVDMGFGLGFLPG 183 (293)
T ss_pred HHhCceEEEecCcceeeeeeccCCHHHHHHHHHHhcCceecccccchhhcCCceEeccCCCCCCCcchhhhccccccccc
Confidence 5689999999996443322233457889999999999999999999999998765321 11 2357888888
Q ss_pred eee------ecccCce
Q 030035 105 TVH------RNFFGSQ 114 (184)
Q Consensus 105 ~v~------rn~~Grq 114 (184)
.+. ||-.||-
T Consensus 184 ~ivDqHF~~R~RmGRL 199 (293)
T COG4242 184 VIVDQHFDNRKRMGRL 199 (293)
T ss_pred eeeehhhhhhhHHHHH
Confidence 774 5555543
No 151
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=95.56 E-value=0.02 Score=49.78 Aligned_cols=52 Identities=23% Similarity=0.326 Sum_probs=37.6
Q ss_pred CCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035 35 LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (184)
Q Consensus 35 l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~ 88 (184)
...+|.+++.||....... ....+.++|++..+.|..+.|||.|.-+|+++.
T Consensus 74 ~~~~~~v~v~~g~~~~~~~--~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~aG 125 (328)
T COG4977 74 APPIDILPVCGGLGPERPV--NAPALLAWLRRAARRGARLGGLCTGAFVLAEAG 125 (328)
T ss_pred cCcceEEEEecCCCccccc--chHHHHHHHHHHHhcCCeEEEehHhHHHHHHhc
Confidence 3457888887764322101 101368899999999999999999999999974
No 152
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.53 E-value=0.085 Score=45.14 Aligned_cols=71 Identities=18% Similarity=0.262 Sum_probs=48.9
Q ss_pred CEEEEEecCCC------HHHHHHHHHHCCCeEEEEcC-------------------C-CCC-CCCCEEEEcCCchhHHHH
Q 030035 1 MVVGVLALQGS------FNEHIAALKRLGVKGVEIRK-------------------P-DQL-QNVSSLIIPGGESTTMAR 53 (184)
Q Consensus 1 m~IgVl~~qG~------~~~~~~~L~~~G~~v~~v~~-------------------~-~~l-~~~DglIipGG~~~~~~~ 53 (184)
|||||+.-.+. ..++.+.|++.|+++.+-.. . +++ +++|.+|.-||-+|.+
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDGT~L-- 78 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVISIGGDGTFL-- 78 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEEECCcHHHH--
Confidence 89999977664 33455668888988776421 0 223 2589999999988753
Q ss_pred HHhcCChHHHHHHHHHcCCcEEEEchHH
Q 030035 54 LAEYHNLFPALREFVKMGKPVWGTCAGL 81 (184)
Q Consensus 54 l~~~~~l~~~l~~~~~~g~PvlGIC~G~ 81 (184)
...+.+...++||+||=.|.
T Consensus 79 --------~aa~~~~~~~~PilGIN~G~ 98 (292)
T PRK01911 79 --------RTATYVGNSNIPILGINTGR 98 (292)
T ss_pred --------HHHHHhcCCCCCEEEEecCC
Confidence 33444445689999998885
No 153
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.22 E-value=0.12 Score=43.88 Aligned_cols=70 Identities=26% Similarity=0.277 Sum_probs=48.5
Q ss_pred CEEEEEecCCC------HHHHHHHHHHCCCeEEEEcC-----C-------CCC--CCCCEEEEcCCchhHHHHHHhcCCh
Q 030035 1 MVVGVLALQGS------FNEHIAALKRLGVKGVEIRK-----P-------DQL--QNVSSLIIPGGESTTMARLAEYHNL 60 (184)
Q Consensus 1 m~IgVl~~qG~------~~~~~~~L~~~G~~v~~v~~-----~-------~~l--~~~DglIipGG~~~~~~~l~~~~~l 60 (184)
|||||+.-.|. ...+.+.|++.|+++.+... . .++ .++|.+|.-||-++..
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGTlL--------- 71 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDGTIL--------- 71 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcHHHH---------
Confidence 89999987774 33455668888998877521 0 122 2689999999988753
Q ss_pred HHHHHHHHHcCCcEEEEchHH
Q 030035 61 FPALREFVKMGKPVWGTCAGL 81 (184)
Q Consensus 61 ~~~l~~~~~~g~PvlGIC~G~ 81 (184)
+.++ ....++|++||=.|.
T Consensus 72 -~a~~-~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 72 -RIEH-KTKKDIPILGINMGT 90 (277)
T ss_pred -HHHH-hcCCCCeEEEEeCCC
Confidence 3334 334589999998886
No 154
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.98 E-value=0.3 Score=42.09 Aligned_cols=70 Identities=21% Similarity=0.329 Sum_probs=46.8
Q ss_pred EEEEEecCCC------HHHHHHHHHHCCCeEEEEcCC-----------------------CCC-CCCCEEEEcCCchhHH
Q 030035 2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP-----------------------DQL-QNVSSLIIPGGESTTM 51 (184)
Q Consensus 2 ~IgVl~~qG~------~~~~~~~L~~~G~~v~~v~~~-----------------------~~l-~~~DglIipGG~~~~~ 51 (184)
||||+.-.+. ...+.+.|++.|+++.+-... .++ +++|.+|.-||-+|.+
T Consensus 3 ~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGTlL 82 (305)
T PRK02649 3 KAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIVLGGDGTVL 82 (305)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEEEeCcHHHH
Confidence 5999877654 233456678889888664310 122 2589999999988753
Q ss_pred HHHHhcCChHHHHHHHHHcCCcEEEEchHH
Q 030035 52 ARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (184)
Q Consensus 52 ~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~ 81 (184)
...+.+...++|++||=.|.
T Consensus 83 ----------~aar~~~~~~iPilGIN~G~ 102 (305)
T PRK02649 83 ----------SAARQLAPCGIPLLTINTGH 102 (305)
T ss_pred ----------HHHHHhcCCCCcEEEEeCCC
Confidence 33444445689999998774
No 155
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.42 E-value=0.49 Score=40.39 Aligned_cols=71 Identities=23% Similarity=0.234 Sum_probs=46.8
Q ss_pred CEEEEEecCCC-----HHHHHHHHHHCCCeEEEEcCC-----------CCC-CCCCEEEEcCCchhHHHHHHhcCChHHH
Q 030035 1 MVVGVLALQGS-----FNEHIAALKRLGVKGVEIRKP-----------DQL-QNVSSLIIPGGESTTMARLAEYHNLFPA 63 (184)
Q Consensus 1 m~IgVl~~qG~-----~~~~~~~L~~~G~~v~~v~~~-----------~~l-~~~DglIipGG~~~~~~~l~~~~~l~~~ 63 (184)
|||||+.-.+. ..++.+.|++.|+++.+-... +++ .++|.+|.-||-+|.+ ..
T Consensus 11 ~~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGT~L----------~a 80 (287)
T PRK14077 11 KKIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLISLGGDGTLI----------SL 80 (287)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEEECCCHHHH----------HH
Confidence 36999877653 122345577788887764311 222 3689999999988753 33
Q ss_pred HHHHHHcCCcEEEEchHH
Q 030035 64 LREFVKMGKPVWGTCAGL 81 (184)
Q Consensus 64 l~~~~~~g~PvlGIC~G~ 81 (184)
.+.+...++||+||=.|.
T Consensus 81 a~~~~~~~~PilGIN~G~ 98 (287)
T PRK14077 81 CRKAAEYDKFVLGIHAGH 98 (287)
T ss_pred HHHhcCCCCcEEEEeCCC
Confidence 444545689999999886
No 156
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.96 E-value=0.85 Score=39.11 Aligned_cols=70 Identities=20% Similarity=0.278 Sum_probs=46.7
Q ss_pred EEEEEecCCC------HHHHHHHHHHCCCeEEEEcC-------------------CCCCC-CCCEEEEcCCchhHHHHHH
Q 030035 2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRK-------------------PDQLQ-NVSSLIIPGGESTTMARLA 55 (184)
Q Consensus 2 ~IgVl~~qG~------~~~~~~~L~~~G~~v~~v~~-------------------~~~l~-~~DglIipGG~~~~~~~l~ 55 (184)
||||+.-.+. ...+.+.|++.|+++.+-.. ..++. .+|.+|.-||-+|.+
T Consensus 7 ~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT~L---- 82 (296)
T PRK04539 7 NIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGGDGTFL---- 82 (296)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEECCcHHHH----
Confidence 6999877654 23345567888988776421 01222 589999999988753
Q ss_pred hcCChHHHHHHHHHcCCcEEEEchHH
Q 030035 56 EYHNLFPALREFVKMGKPVWGTCAGL 81 (184)
Q Consensus 56 ~~~~l~~~l~~~~~~g~PvlGIC~G~ 81 (184)
...+.+...++||+||=.|.
T Consensus 83 ------~aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 83 ------SVAREIAPRAVPIIGINQGH 102 (296)
T ss_pred ------HHHHHhcccCCCEEEEecCC
Confidence 33344444589999999886
No 157
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.85 E-value=0.76 Score=39.33 Aligned_cols=70 Identities=17% Similarity=0.240 Sum_probs=46.9
Q ss_pred EEEEEecCCC------HHHHHHHHHHCCCeEEEEcCC--------------CCC-CCCCEEEEcCCchhHHHHHHhcCCh
Q 030035 2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP--------------DQL-QNVSSLIIPGGESTTMARLAEYHNL 60 (184)
Q Consensus 2 ~IgVl~~qG~------~~~~~~~L~~~G~~v~~v~~~--------------~~l-~~~DglIipGG~~~~~~~l~~~~~l 60 (184)
+|||+.-.+. ...+.+.|++.|+++.+-... +++ +++|.+|.-||-+|..
T Consensus 7 ~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGDGT~L--------- 77 (292)
T PRK03378 7 CIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGGDGNML--------- 77 (292)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECCcHHHH---------
Confidence 5999877664 233556677889887764310 122 3589999999988753
Q ss_pred HHHHHHHHHcCCcEEEEchHH
Q 030035 61 FPALREFVKMGKPVWGTCAGL 81 (184)
Q Consensus 61 ~~~l~~~~~~g~PvlGIC~G~ 81 (184)
...+.+...++|++||=.|.
T Consensus 78 -~aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 78 -GAARVLARYDIKVIGINRGN 97 (292)
T ss_pred -HHHHHhcCCCCeEEEEECCC
Confidence 23344444579999999887
No 158
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=92.84 E-value=0.44 Score=36.21 Aligned_cols=59 Identities=19% Similarity=0.176 Sum_probs=44.6
Q ss_pred HHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEc
Q 030035 13 NEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (184)
Q Consensus 13 ~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC 78 (184)
..+.++|++.|+.+.++....++.+++.||+|.-....- ...+.|++++++|.-++..+
T Consensus 29 ~~~~~~l~~~gi~~d~v~~~~~l~~y~~vi~P~~~~~~~-------~~~~~l~~~v~~GG~li~~~ 87 (154)
T cd03143 29 LALYRALRELGIPVDVVPPDADLSGYKLVVLPDLYLLSD-------ATAAALRAYVENGGTLVAGP 87 (154)
T ss_pred HHHHHHHHHCCCCEEEECCCCCcccCCEEEECchhcCCH-------HHHHHHHHHHHCCCEEEEec
Confidence 446688999999999998777888999999998642220 24678999999876555543
No 159
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.83 E-value=0.45 Score=40.15 Aligned_cols=63 Identities=22% Similarity=0.264 Sum_probs=41.7
Q ss_pred CEEEEEecCCC--H----HHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHH--cCC
Q 030035 1 MVVGVLALQGS--F----NEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVK--MGK 72 (184)
Q Consensus 1 m~IgVl~~qG~--~----~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~--~g~ 72 (184)
|||+|+.- .. - ..+.+.|++.|+++. .+++|.+|.-||-+|-+ ...+.+.. .++
T Consensus 1 M~i~Ii~~-~~~~~~~~~~~l~~~l~~~g~~~~-------~~~~Dlvi~iGGDGT~L----------~a~~~~~~~~~~i 62 (265)
T PRK04885 1 MKVAIISN-GDPKSKRVASKLKKYLKDFGFILD-------EKNPDIVISVGGDGTLL----------SAFHRYENQLDKV 62 (265)
T ss_pred CEEEEEeC-CCHHHHHHHHHHHHHHHHcCCccC-------CcCCCEEEEECCcHHHH----------HHHHHhcccCCCC
Confidence 89999866 43 1 223344666777621 24689999999988753 33444443 589
Q ss_pred cEEEEchHH
Q 030035 73 PVWGTCAGL 81 (184)
Q Consensus 73 PvlGIC~G~ 81 (184)
|++||=.|.
T Consensus 63 PilGIN~G~ 71 (265)
T PRK04885 63 RFVGVHTGH 71 (265)
T ss_pred eEEEEeCCC
Confidence 999998885
No 160
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.69 E-value=0.78 Score=39.55 Aligned_cols=70 Identities=19% Similarity=0.198 Sum_probs=46.8
Q ss_pred EEEEEecCCC------HHHHHHHHHHCCCeEEEEcCC-----------------------CCC-CCCCEEEEcCCchhHH
Q 030035 2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP-----------------------DQL-QNVSSLIIPGGESTTM 51 (184)
Q Consensus 2 ~IgVl~~qG~------~~~~~~~L~~~G~~v~~v~~~-----------------------~~l-~~~DglIipGG~~~~~ 51 (184)
||||+.-.+. ..++.+.|++.|+++.+.... +++ +++|.+|.-||-+|.+
T Consensus 7 ~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT~L 86 (306)
T PRK03372 7 RVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLVLGGDGTIL 86 (306)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEEEcCCHHHH
Confidence 5999877664 233556677889887764310 122 3589999999988753
Q ss_pred HHHHhcCChHHHHHHHHHcCCcEEEEchHH
Q 030035 52 ARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (184)
Q Consensus 52 ~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~ 81 (184)
...+.+...++||+||=.|.
T Consensus 87 ----------~aar~~~~~~~PilGIN~G~ 106 (306)
T PRK03372 87 ----------RAAELARAADVPVLGVNLGH 106 (306)
T ss_pred ----------HHHHHhccCCCcEEEEecCC
Confidence 33444445689999998874
No 161
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=92.62 E-value=0.25 Score=39.79 Aligned_cols=58 Identities=22% Similarity=0.281 Sum_probs=32.2
Q ss_pred HHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEE
Q 030035 13 NEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (184)
Q Consensus 13 ~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGI 77 (184)
..+.++|++.|+.+.+++..++|++|..||+|.-.... + ...+.|++++++|.-++..
T Consensus 33 ~~~y~al~~~gi~vDvv~~~~dL~~Ykllv~P~~~~l~-----~--~~~~~L~~yV~~GG~li~~ 90 (207)
T PF08532_consen 33 RGWYRALRELGIPVDVVSPDDDLSGYKLLVLPSLYILS-----P--EFAERLRAYVENGGTLILT 90 (207)
T ss_dssp HHHHHHHHTTT--EEEE-TTS--TT-SEEEES--SC-------H--HH---HHHHHT-SS-EEE-
T ss_pred HHHHHHHHHcCCceEEecCcCCcccCcEEEEeeEEEEC-----h--HHHHHHHHHHHCCCEEEEE
Confidence 34567899999999999887799999999999854222 1 1456788999886555543
No 162
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=92.41 E-value=0.84 Score=39.00 Aligned_cols=70 Identities=19% Similarity=0.298 Sum_probs=47.5
Q ss_pred EEEEEecCCC------HHHHHHHHHHCCCeEEEEcCC--------------CCC-CCCCEEEEcCCchhHHHHHHhcCCh
Q 030035 2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP--------------DQL-QNVSSLIIPGGESTTMARLAEYHNL 60 (184)
Q Consensus 2 ~IgVl~~qG~------~~~~~~~L~~~G~~v~~v~~~--------------~~l-~~~DglIipGG~~~~~~~l~~~~~l 60 (184)
+|+|+.-.+. ...+.+.|++.|+++.+.... +++ +.+|.+|.-||-++..
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l--------- 77 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGDGTML--------- 77 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCcHHHH---------
Confidence 5999877664 344556788889886664310 122 2589999999988753
Q ss_pred HHHHHHHHHcCCcEEEEchHH
Q 030035 61 FPALREFVKMGKPVWGTCAGL 81 (184)
Q Consensus 61 ~~~l~~~~~~g~PvlGIC~G~ 81 (184)
+.++.+...++|++||=.|.
T Consensus 78 -~~~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 78 -GIGRQLAPYGVPLIGINHGR 97 (291)
T ss_pred -HHHHHhcCCCCCEEEEcCCC
Confidence 33444445689999998886
No 163
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.95 E-value=0.9 Score=42.35 Aligned_cols=71 Identities=18% Similarity=0.174 Sum_probs=47.6
Q ss_pred CEEEEEecCCC------HHHHHHHHHHCCCeEEEEcC---------------CCCCCCCCEEEEcCCchhHHHHHHhcCC
Q 030035 1 MVVGVLALQGS------FNEHIAALKRLGVKGVEIRK---------------PDQLQNVSSLIIPGGESTTMARLAEYHN 59 (184)
Q Consensus 1 m~IgVl~~qG~------~~~~~~~L~~~G~~v~~v~~---------------~~~l~~~DglIipGG~~~~~~~l~~~~~ 59 (184)
|||+|+.-.+. ...+.+.|++.|+++.+-.. ..++.++|.+|.-||-+|.+
T Consensus 291 ~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDGT~L-------- 362 (569)
T PRK14076 291 TKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGDGTVL-------- 362 (569)
T ss_pred cEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCcHHHH--------
Confidence 78999877663 22345567778887766421 01234689999999988753
Q ss_pred hHHHHHHHHHcCCcEEEEchHH
Q 030035 60 LFPALREFVKMGKPVWGTCAGL 81 (184)
Q Consensus 60 l~~~l~~~~~~g~PvlGIC~G~ 81 (184)
...+.+...++||+||=.|.
T Consensus 363 --~aa~~~~~~~~PilGin~G~ 382 (569)
T PRK14076 363 --RASKLVNGEEIPIICINMGT 382 (569)
T ss_pred --HHHHHhcCCCCCEEEEcCCC
Confidence 33444445689999998775
No 164
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.95 E-value=1 Score=37.78 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=44.8
Q ss_pred CEEEEEecCCCH---HHHHHHHHHCCCeEEEEcCCC-CCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEE
Q 030035 1 MVVGVLALQGSF---NEHIAALKRLGVKGVEIRKPD-QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (184)
Q Consensus 1 m~IgVl~~qG~~---~~~~~~L~~~G~~v~~v~~~~-~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlG 76 (184)
||++|..-.... .++.+.|.+.|.++.+..... ...++|.+|.-||-++.. ...+.+ ++||+|
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGT~L----------~a~~~~---~~Pilg 67 (256)
T PRK14075 1 MKLGIFYREEKEKEAKFLKEKISKEHEVVEFCEASASGKVTADLIIVVGGDGTVL----------KAAKKV---GTPLVG 67 (256)
T ss_pred CEEEEEeCccHHHHHHHHHHHHHHcCCeeEeecccccccCCCCEEEEECCcHHHH----------HHHHHc---CCCEEE
Confidence 899998554422 224455667787766553322 235789999999988753 223333 799999
Q ss_pred EchHH
Q 030035 77 TCAGL 81 (184)
Q Consensus 77 IC~G~ 81 (184)
|=.|.
T Consensus 68 in~G~ 72 (256)
T PRK14075 68 FKAGR 72 (256)
T ss_pred EeCCC
Confidence 98875
No 165
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=91.52 E-value=1.6 Score=37.57 Aligned_cols=70 Identities=20% Similarity=0.211 Sum_probs=46.3
Q ss_pred EEEEEecCCC------HHHHHHHHHHCCCeEEEEcCC----------CCC-CCCCEEEEcCCchhHHHHHHhcCChHHHH
Q 030035 2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP----------DQL-QNVSSLIIPGGESTTMARLAEYHNLFPAL 64 (184)
Q Consensus 2 ~IgVl~~qG~------~~~~~~~L~~~G~~v~~v~~~----------~~l-~~~DglIipGG~~~~~~~l~~~~~l~~~l 64 (184)
||+++.-.|. ...+.+.|++.|+++.+.... ... ..+|.+|.-||.++.. +.+
T Consensus 5 kv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGT~l----------~~~ 74 (305)
T PRK02645 5 QVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDGTVL----------AAA 74 (305)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcHHHH----------HHH
Confidence 5888877764 223456677889987765321 112 3589999999988753 233
Q ss_pred HHHHHcCCcEEEEch-HH
Q 030035 65 REFVKMGKPVWGTCA-GL 81 (184)
Q Consensus 65 ~~~~~~g~PvlGIC~-G~ 81 (184)
+.+...++|++||=. |.
T Consensus 75 ~~~~~~~~pv~gin~~G~ 92 (305)
T PRK02645 75 RHLAPHDIPILSVNVGGH 92 (305)
T ss_pred HHhccCCCCEEEEecCCc
Confidence 333346899999987 53
No 166
>PLN02929 NADH kinase
Probab=90.32 E-value=1.2 Score=38.39 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=39.8
Q ss_pred HHHHHHHCCCeEEEEcCC---CCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchH
Q 030035 15 HIAALKRLGVKGVEIRKP---DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (184)
Q Consensus 15 ~~~~L~~~G~~v~~v~~~---~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G 80 (184)
+.+.|++.|+++..+... +.+.++|.+|.-||-+|.. ...+.+ ..++||+||=.|
T Consensus 39 ~~~~L~~~gi~~~~v~r~~~~~~~~~~Dlvi~lGGDGT~L----------~aa~~~-~~~iPvlGIN~G 96 (301)
T PLN02929 39 CKDILQQKSVDWECVLRNELSQPIRDVDLVVAVGGDGTLL----------QASHFL-DDSIPVLGVNSD 96 (301)
T ss_pred HHHHHHHcCCEEEEeeccccccccCCCCEEEEECCcHHHH----------HHHHHc-CCCCcEEEEECC
Confidence 456788899998766432 2357899999999988753 233334 568999999888
No 167
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.79 E-value=2.6 Score=35.75 Aligned_cols=65 Identities=20% Similarity=0.286 Sum_probs=40.7
Q ss_pred CEEEEEecCCCH------HHHHHHHHHCCCeEEEEcCC-----------CCCCCCCEEEEcCCchhHHHHHHhcCChHHH
Q 030035 1 MVVGVLALQGSF------NEHIAALKRLGVKGVEIRKP-----------DQLQNVSSLIIPGGESTTMARLAEYHNLFPA 63 (184)
Q Consensus 1 m~IgVl~~qG~~------~~~~~~L~~~G~~v~~v~~~-----------~~l~~~DglIipGG~~~~~~~l~~~~~l~~~ 63 (184)
|||||+.-.+.- ..+.+.| +.|+++.+-... +++ ++|.+|.-||-+|-...
T Consensus 1 m~i~iv~~~~~~~~~~~~~~i~~~l-~~g~~~~~~~~~~~~~~~~~~~~~~~-~~D~vi~lGGDGT~L~a---------- 68 (271)
T PRK01185 1 MKVAFVIRKDCKRCIKIAKSIIELL-PPDWEIIYEMEAAKALGMDGLDIEEI-NADVIITIGGDGTILRT---------- 68 (271)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHH-hcCCEEEEechhhhhcCcccCccccc-CCCEEEEEcCcHHHHHH----------
Confidence 899999876641 2233445 457776654311 122 68999999998875322
Q ss_pred HHHHHHcCCcEEEEchH
Q 030035 64 LREFVKMGKPVWGTCAG 80 (184)
Q Consensus 64 l~~~~~~g~PvlGIC~G 80 (184)
.+. ...||+||=.|
T Consensus 69 ~~~---~~~PilGIN~G 82 (271)
T PRK01185 69 LQR---AKGPILGINMG 82 (271)
T ss_pred HHH---cCCCEEEEECC
Confidence 222 13599999888
No 168
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=89.49 E-value=3.1 Score=32.81 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=50.9
Q ss_pred CEEEEEe--cCCCHHHHH----HHHHHCCCeEEEEcC--CC--CCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHH-
Q 030035 1 MVVGVLA--LQGSFNEHI----AALKRLGVKGVEIRK--PD--QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVK- 69 (184)
Q Consensus 1 m~IgVl~--~qG~~~~~~----~~L~~~G~~v~~v~~--~~--~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~- 69 (184)
||+.|+. -.|+-.++. ..|++.|.++.+... .. +++++|.+||.-+ --++++.+ .+.+.++++.+
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~~~l~~ydavVIgAs--I~~~h~~~--~~~~Fv~k~~e~ 76 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAVEEPALEDYDAVVIGAS--IRYGHFHE--AVQSFVKKHAEA 76 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhhhccChhhCceEEEecc--hhhhhhHH--HHHHHHHHHHHH
Confidence 7888764 357765544 457889998888752 22 5789999999654 23333333 24555655544
Q ss_pred -cCCcEEEEchHH
Q 030035 70 -MGKPVWGTCAGL 81 (184)
Q Consensus 70 -~g~PvlGIC~G~ 81 (184)
+++|..-.|.+.
T Consensus 77 L~~kP~A~f~vnl 89 (175)
T COG4635 77 LSTKPSAFFSVNL 89 (175)
T ss_pred HhcCCceEEEeeh
Confidence 489999999874
No 169
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=88.81 E-value=2.8 Score=32.99 Aligned_cols=75 Identities=13% Similarity=0.153 Sum_probs=42.7
Q ss_pred CEEEEEec--CCCHHHHHHHHHH-C--CCeEEEEc--C--CCCCCCCCEEEEcCCc--hhHHHHHHhcCChHHHHHHHH-
Q 030035 1 MVVGVLAL--QGSFNEHIAALKR-L--GVKGVEIR--K--PDQLQNVSSLIIPGGE--STTMARLAEYHNLFPALREFV- 68 (184)
Q Consensus 1 m~IgVl~~--qG~~~~~~~~L~~-~--G~~v~~v~--~--~~~l~~~DglIipGG~--~~~~~~l~~~~~l~~~l~~~~- 68 (184)
|||.|+.. .|+-..+.+.+.+ + |.++.++. . ..++.++|.||+.++- +..... +.+++++..
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~g~~v~~~~~~~~~~~~l~~yD~vIlGspi~~G~~~~~------~~~fl~~~~~ 74 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKEGIQCDVVNLHRIEEPDLSDYDRVVIGASIRYGHFHSA------LYKFVKKHAT 74 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCCCCeEEEEEhhhcCccCHHHCCEEEEECccccCCcCHH------HHHHHHHHHH
Confidence 88887654 6887776665433 2 55666553 2 2357789998886642 111111 223332221
Q ss_pred -HcCCcEEEEchHH
Q 030035 69 -KMGKPVWGTCAGL 81 (184)
Q Consensus 69 -~~g~PvlGIC~G~ 81 (184)
-.++|++-.|.|+
T Consensus 75 ~l~~K~v~~F~v~l 88 (177)
T PRK11104 75 QLNQMPSAFFSVNL 88 (177)
T ss_pred HhCCCeEEEEEech
Confidence 2578888888773
No 170
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=87.65 E-value=0.77 Score=36.98 Aligned_cols=60 Identities=17% Similarity=0.287 Sum_probs=39.0
Q ss_pred HHHH-HCCCeEEEEcCC-----CCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHH
Q 030035 17 AALK-RLGVKGVEIRKP-----DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (184)
Q Consensus 17 ~~L~-~~G~~v~~v~~~-----~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~ 81 (184)
+.|+ ..++++++..++ +.|+++|.||+.......+. . ...+.|++++++|++++|+..+.
T Consensus 26 ~ll~~~~~~~v~~~~~~~~~~~~~L~~~Dvvv~~~~~~~~l~---~--~~~~al~~~v~~Ggglv~lH~~~ 91 (217)
T PF06283_consen 26 QLLEESEGFEVTVTEDPDDLTPENLKGYDVVVFYNTGGDELT---D--EQRAALRDYVENGGGLVGLHGAA 91 (217)
T ss_dssp HHHHHTTCEEEEECCSGGCTSHHCHCT-SEEEEE-SSCCGS----H--HHHHHHHHHHHTT-EEEEEGGGG
T ss_pred HHhccCCCEEEEEEeCcccCChhHhcCCCEEEEECCCCCcCC---H--HHHHHHHHHHHcCCCEEEEcccc
Confidence 4456 467888877653 34789999999764332221 1 24678999999999999999443
No 171
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.79 E-value=4.6 Score=34.57 Aligned_cols=70 Identities=21% Similarity=0.343 Sum_probs=45.8
Q ss_pred EEEEEecCCC------HHHHHHHHHHCCCeEEEEcCC--------------CCC-CCCCEEEEcCCchhHHHHHHhcCCh
Q 030035 2 VVGVLALQGS------FNEHIAALKRLGVKGVEIRKP--------------DQL-QNVSSLIIPGGESTTMARLAEYHNL 60 (184)
Q Consensus 2 ~IgVl~~qG~------~~~~~~~L~~~G~~v~~v~~~--------------~~l-~~~DglIipGG~~~~~~~l~~~~~l 60 (184)
||||+.-.+. ...+.+.|++.|+++.+.... .++ +.+|.+|.-||-++...
T Consensus 6 ~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGt~l~-------- 77 (295)
T PRK01231 6 NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGDGSLLG-------- 77 (295)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCcHHHHH--------
Confidence 6999876553 233455677788887765311 112 25899999999887532
Q ss_pred HHHHHHHHHcCCcEEEEchHH
Q 030035 61 FPALREFVKMGKPVWGTCAGL 81 (184)
Q Consensus 61 ~~~l~~~~~~g~PvlGIC~G~ 81 (184)
..+.+...++||+||=.|.
T Consensus 78 --~~~~~~~~~~Pvlgin~G~ 96 (295)
T PRK01231 78 --AARALARHNVPVLGINRGR 96 (295)
T ss_pred --HHHHhcCCCCCEEEEeCCc
Confidence 2333334689999998885
No 172
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.60 E-value=3.1 Score=35.06 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=39.3
Q ss_pred CEEEEEecCCC-HHHHHHHHHH----CCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035 1 MVVGVLALQGS-FNEHIAALKR----LGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (184)
Q Consensus 1 m~IgVl~~qG~-~~~~~~~L~~----~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl 75 (184)
||..+++-.-. -.+..+.|++ .+. ..+++|.+|.-||-+|-+ ..++.+...++|++
T Consensus 1 ~~~~i~~~~~~~s~~~~~~l~~~~~~~~~---------~~~~~D~vi~iGGDGT~L----------~a~~~~~~~~iPil 61 (259)
T PRK00561 1 MKYKIFASTTPQTEPVLPKLKKVLKKKLA---------VEDGADYLFVLGGDGFFV----------STAANYNCAGCKVV 61 (259)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHhhCCC---------ccCCCCEEEEECCcHHHH----------HHHHHhcCCCCcEE
Confidence 78888775443 2223344433 221 235689999999988753 33445545789999
Q ss_pred EEchHH
Q 030035 76 GTCAGL 81 (184)
Q Consensus 76 GIC~G~ 81 (184)
||=.|.
T Consensus 62 GIN~G~ 67 (259)
T PRK00561 62 GINTGH 67 (259)
T ss_pred EEecCC
Confidence 998874
No 173
>PRK09271 flavodoxin; Provisional
Probab=84.28 E-value=11 Score=28.89 Aligned_cols=45 Identities=13% Similarity=0.098 Sum_probs=28.9
Q ss_pred CEEEEEe--cCCCHHHHHH----HHHHCCCeEEEEcC--------CCCCCCCCEEEEcC
Q 030035 1 MVVGVLA--LQGSFNEHIA----ALKRLGVKGVEIRK--------PDQLQNVSSLIIPG 45 (184)
Q Consensus 1 m~IgVl~--~qG~~~~~~~----~L~~~G~~v~~v~~--------~~~l~~~DglIipG 45 (184)
|||.|+. ..||-..+.+ .|+..|+++.+... ..++.++|.++|.-
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt 59 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGT 59 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEEC
Confidence 8888875 4677666544 45667887765431 12445789998854
No 174
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=84.12 E-value=6.4 Score=35.80 Aligned_cols=30 Identities=27% Similarity=0.051 Sum_probs=26.6
Q ss_pred CEEEEEecCCCHHHHHHHHHHCCCeEEEEc
Q 030035 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (184)
Q Consensus 1 m~IgVl~~qG~~~~~~~~L~~~G~~v~~v~ 30 (184)
|||.|+.+...=.+..+.|.+.|+++.+..
T Consensus 8 ~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D 37 (448)
T COG0771 8 KKVLVLGLGKSGLAAARFLLKLGAEVTVSD 37 (448)
T ss_pred CEEEEEecccccHHHHHHHHHCCCeEEEEc
Confidence 689999998888999999999999888775
No 175
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=83.95 E-value=0.62 Score=35.47 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=26.0
Q ss_pred CCCCCCCCCEEEEcCCchhH-HHHHHhcCChHHHHHHHHHcCCcEEEEch
Q 030035 31 KPDQLQNVSSLIIPGGESTT-MARLAEYHNLFPALREFVKMGKPVWGTCA 79 (184)
Q Consensus 31 ~~~~l~~~DglIipGG~~~~-~~~l~~~~~l~~~l~~~~~~g~PvlGIC~ 79 (184)
..+++..+|.+++-||-+.. ++.-.+ +..+.+.+ ..++|+.|+|.
T Consensus 79 e~e~~n~aDvvVLlGGLaMP~~gv~~d--~~kel~ee--~~~kkliGvCf 124 (154)
T COG4090 79 EREELNSADVVVLLGGLAMPKIGVTPD--DAKELLEE--LGNKKLIGVCF 124 (154)
T ss_pred CccccccccEEEEEcccccCcCCCCHH--HHHHHHHh--cCCCceEEeeH
Confidence 34567789999999995332 100000 12333332 24678999997
No 176
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.70 E-value=5.2 Score=33.94 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=39.6
Q ss_pred HHHHHHHHHCCCeEEEEcCC--------------CCC-CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEE
Q 030035 13 NEHIAALKRLGVKGVEIRKP--------------DQL-QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (184)
Q Consensus 13 ~~~~~~L~~~G~~v~~v~~~--------------~~l-~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGI 77 (184)
..+.+.|++.|+++.+-... +++ .++|.+|.-||-+|.+ ...+.+...++||+||
T Consensus 3 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGT~L----------~aa~~~~~~~~PilgI 72 (272)
T PRK02231 3 KNLFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIGQRAQLAIVIGGDGNML----------GRARVLAKYDIPLIGI 72 (272)
T ss_pred HHHHHHHHHCCCEEEEecchhhhcCccccccCChHHhCcCCCEEEEECCcHHHH----------HHHHHhccCCCcEEEE
Confidence 34567788899887764310 222 2589999999988753 3344444568999999
Q ss_pred chH
Q 030035 78 CAG 80 (184)
Q Consensus 78 C~G 80 (184)
=.|
T Consensus 73 n~G 75 (272)
T PRK02231 73 NRG 75 (272)
T ss_pred eCC
Confidence 877
No 177
>PRK06242 flavodoxin; Provisional
Probab=80.76 E-value=5.4 Score=29.77 Aligned_cols=45 Identities=13% Similarity=0.200 Sum_probs=31.0
Q ss_pred CEEEEEec---CCCHHHHHHHHHH-CCCeEEEEcC--CCCCCCCCEEEEcC
Q 030035 1 MVVGVLAL---QGSFNEHIAALKR-LGVKGVEIRK--PDQLQNVSSLIIPG 45 (184)
Q Consensus 1 m~IgVl~~---qG~~~~~~~~L~~-~G~~v~~v~~--~~~l~~~DglIipG 45 (184)
||+.|+.+ .||-..+++.+.+ ++.++..+.. ..++.++|.||+..
T Consensus 1 mk~~IiY~S~~tGnT~~~A~~ia~~l~~~~~~i~~~~~~~~~~~d~ii~g~ 51 (150)
T PRK06242 1 MKALIVYASVHHGNTEKIAKAIAEVLDAEVIDPGDVNPEDLSEYDLIGFGS 51 (150)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhcCcEEecHHHCCcccHhHCCEEEEeC
Confidence 88888765 3788888877644 5666555542 34578999998864
No 178
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=80.07 E-value=4.1 Score=34.58 Aligned_cols=81 Identities=22% Similarity=0.252 Sum_probs=46.6
Q ss_pred EEEEEecCCCHHHHH-HHHHHCCC-----eEEEEc--------CC-----------CCC--CCCCEEEEcCCchhH----
Q 030035 2 VVGVLALQGSFNEHI-AALKRLGV-----KGVEIR--------KP-----------DQL--QNVSSLIIPGGESTT---- 50 (184)
Q Consensus 2 ~IgVl~~qG~~~~~~-~~L~~~G~-----~v~~v~--------~~-----------~~l--~~~DglIipGG~~~~---- 50 (184)
||+||.+--+-.+.. +.|+-+|. ++.+++ ++ +++ ..+||+||+|.+-..
T Consensus 37 ~IlilNLMP~Ki~TE~Q~lRLL~nsPLQV~itll~~~sh~~KnTp~eHl~~FY~tfeeVk~~~FDG~IiTGAPve~l~fe 116 (307)
T COG1897 37 KILILNLMPKKIETETQILRLLGNSPLQVDITLLRIDSHESKNTPAEHLNSFYCTFEEVKDQKFDGLIITGAPVELLPFE 116 (307)
T ss_pred eeeeeecCchhHHHHHHHHHHhcCCCceEEEEEEEecCcCCCCCcHHHHHHHhhcHHHHhhcccCceEEeCCcccccCch
Confidence 688888766554433 55666553 344432 11 223 479999999974221
Q ss_pred ---H-HHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhh
Q 030035 51 ---M-ARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKA 88 (184)
Q Consensus 51 ---~-~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~ 88 (184)
+ +.+.+ +++|-+.-+ .-.|-||.|.|.--...
T Consensus 117 eV~YW~el~~---I~eWskt~V---~STl~ICWgaqAaly~~ 152 (307)
T COG1897 117 EVAYWEELKQ---IFEWSKTHV---TSTLHICWGAQAALYYF 152 (307)
T ss_pred hhhhHHHHHH---HHHHHhhcc---hhhhhhHHHHHHHHHHH
Confidence 1 22222 455555433 35789999999755544
No 179
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=78.50 E-value=11 Score=34.94 Aligned_cols=69 Identities=23% Similarity=0.233 Sum_probs=44.0
Q ss_pred EEEEEecCCC------HHHHHHHHH-HCCCeEEEEcC-------------------C-CC---C-CCCCEEEEcCCchhH
Q 030035 2 VVGVLALQGS------FNEHIAALK-RLGVKGVEIRK-------------------P-DQ---L-QNVSSLIIPGGESTT 50 (184)
Q Consensus 2 ~IgVl~~qG~------~~~~~~~L~-~~G~~v~~v~~-------------------~-~~---l-~~~DglIipGG~~~~ 50 (184)
+|||+.-.+. ..++.+.|+ +.|+++.+-.. . .+ + .++|.+|.-||-+|.
T Consensus 196 ~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIsiGGDGTl 275 (508)
T PLN02935 196 TVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVITLGGDGTV 275 (508)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEEECCcHHH
Confidence 6888877664 233455566 46777665321 0 11 2 358999999998875
Q ss_pred HHHHHhcCChHHHHHHHHHcCCcEEEEchH
Q 030035 51 MARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (184)
Q Consensus 51 ~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G 80 (184)
+ ...+.+...++||+||=.|
T Consensus 276 L----------~Aar~~~~~~iPILGIN~G 295 (508)
T PLN02935 276 L----------WAASMFKGPVPPVVPFSMG 295 (508)
T ss_pred H----------HHHHHhccCCCcEEEEeCC
Confidence 3 2334444467999999877
No 180
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=77.75 E-value=9.1 Score=29.39 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=23.3
Q ss_pred HHHHHHHH----HHCCCeEEEEcCCC----------CCCCCCEEEE-cCCchh
Q 030035 12 FNEHIAAL----KRLGVKGVEIRKPD----------QLQNVSSLII-PGGEST 49 (184)
Q Consensus 12 ~~~~~~~L----~~~G~~v~~v~~~~----------~l~~~DglIi-pGG~~~ 49 (184)
+.++.+.+ ++.|+++....+.. ..+++|++|| ||++..
T Consensus 27 l~~i~~~~~~~a~~~g~~v~~~QSN~EGelid~I~~a~~~~dgiIINpga~th 79 (140)
T PF01220_consen 27 LEDIEQKCKETAAELGVEVEFFQSNHEGELIDWIHEARDDVDGIIINPGAYTH 79 (140)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEE-SSHHHHHHHHHHHTCTTSEEEEE-GGGGH
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHhhCCEEEEccchhcc
Confidence 44444444 45788888876541 1346999999 888744
No 181
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=76.80 E-value=13 Score=31.33 Aligned_cols=48 Identities=29% Similarity=0.423 Sum_probs=32.6
Q ss_pred CEEEEEe-----cCC-----CHHHHHHHHHHCCCeEEEEcC----CCC--------CCCCCEEEEcCCch
Q 030035 1 MVVGVLA-----LQG-----SFNEHIAALKRLGVKGVEIRK----PDQ--------LQNVSSLIIPGGES 48 (184)
Q Consensus 1 m~IgVl~-----~qG-----~~~~~~~~L~~~G~~v~~v~~----~~~--------l~~~DglIipGG~~ 48 (184)
|+.+|++ +.| |..-+.+.|.+.|+++..+.. +++ .+.+|.+|++||-+
T Consensus 2 ~~a~iI~vG~ElL~G~ivdtNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLG 71 (255)
T COG1058 2 MKAEIIAVGDELLSGRIVDTNAAFLADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGLG 71 (255)
T ss_pred ceEEEEEEccceecCceecchHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcC
Confidence 5677776 334 445567889999998876542 111 24699999999853
No 182
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=76.50 E-value=15 Score=30.41 Aligned_cols=67 Identities=16% Similarity=0.257 Sum_probs=44.6
Q ss_pred EEEEEecCCC-------------HHHHHHHHHHCCCeEEEEcC-CCCC-CCCCEEEEcCCchhHHHHHHhcCChHHHHHH
Q 030035 2 VVGVLALQGS-------------FNEHIAALKRLGVKGVEIRK-PDQL-QNVSSLIIPGGESTTMARLAEYHNLFPALRE 66 (184)
Q Consensus 2 ~IgVl~~qG~-------------~~~~~~~L~~~G~~v~~v~~-~~~l-~~~DglIipGG~~~~~~~l~~~~~l~~~l~~ 66 (184)
+|+++.-.|. +..+.+.|++. +++..+.. ...+ +++|.|||.|....--. .-...|.+
T Consensus 148 ~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~~~l~~~~IP~~~d~Lvi~~P~~~ls~------~e~~~l~~ 220 (271)
T PF09822_consen 148 KVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEELNLANEEIPDDADVLVIAGPKTDLSE------EELYALDQ 220 (271)
T ss_pred eEEEEccccccccccccccCcchHHHHHHHHHhc-CceeecCCcccccCCCCCEEEEECCCCCCCH------HHHHHHHH
Confidence 5777764443 45567788888 88888764 4556 78999999985431100 12556888
Q ss_pred HHHcCCcEE
Q 030035 67 FVKMGKPVW 75 (184)
Q Consensus 67 ~~~~g~Pvl 75 (184)
|+.+|.+++
T Consensus 221 yl~~GG~ll 229 (271)
T PF09822_consen 221 YLMNGGKLL 229 (271)
T ss_pred HHHcCCeEE
Confidence 888877665
No 183
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=76.44 E-value=8.7 Score=34.51 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=32.1
Q ss_pred CEEEEEec-----CC-----CHHHHHHHHHHCCCeEEEE---cCC-C--------CCCCCCEEEEcCCc
Q 030035 1 MVVGVLAL-----QG-----SFNEHIAALKRLGVKGVEI---RKP-D--------QLQNVSSLIIPGGE 47 (184)
Q Consensus 1 m~IgVl~~-----qG-----~~~~~~~~L~~~G~~v~~v---~~~-~--------~l~~~DglIipGG~ 47 (184)
|||+|++. .| |-..+.+.|++.|+++... .+. + -++.+|.||++||-
T Consensus 1 m~v~Ii~tGdEll~G~i~dtN~~~l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlVIttGGl 69 (413)
T TIGR00200 1 LKAEIISVGDELLLGQIVNTNAQWLADFLAHQGLPLSRRTTVGDNPERLKTIIRIASERADVLIFNGGL 69 (413)
T ss_pred CEEEEEEECccccCCcEEEchHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 89999864 34 3334567899999987644 322 1 13579999999984
No 184
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=75.97 E-value=19 Score=32.35 Aligned_cols=78 Identities=10% Similarity=0.094 Sum_probs=46.8
Q ss_pred CEEEEEecCCCHHH-HHHHHHHCCCeEEEEcCC---------------------CCCCCCCEEEEcCCchhH---HHHHH
Q 030035 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKP---------------------DQLQNVSSLIIPGGESTT---MARLA 55 (184)
Q Consensus 1 m~IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~---------------------~~l~~~DglIipGG~~~~---~~~l~ 55 (184)
+||.|+.+.|.=.+ +.+.|.+.|++|...... +.++++|.+|++-|-+.. +....
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~a~ 87 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELVAAR 87 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHH
Confidence 46888888887777 688999999888766421 113468989886664322 22222
Q ss_pred hc----CChHHHHHHHHHcCCcEEEEch
Q 030035 56 EY----HNLFPALREFVKMGKPVWGTCA 79 (184)
Q Consensus 56 ~~----~~l~~~l~~~~~~g~PvlGIC~ 79 (184)
+. .+-.+.+.++.. .+|+.||..
T Consensus 88 ~~~i~i~~~~e~~~~~~~-~~~~I~ITG 114 (461)
T PRK00421 88 ELGIPVVRRAEMLAELMR-FRTSIAVAG 114 (461)
T ss_pred HCCCcEEeHHHHHHHHHc-cCcEEEEEC
Confidence 21 112334434332 458888874
No 185
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=74.71 E-value=4.2 Score=34.00 Aligned_cols=38 Identities=24% Similarity=0.594 Sum_probs=29.1
Q ss_pred CCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHH
Q 030035 34 QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (184)
Q Consensus 34 ~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~ 81 (184)
+++++|.+|.-||-++. ....+.+...++|++||=.|.
T Consensus 22 ~~~~~Dlvi~iGGDGTl----------L~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 22 PIEEADVIVALGGDGFM----------LQTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred CcccCCEEEEECCCHHH----------HHHHHHhcCCCCeEEEEeCCC
Confidence 55678999999998875 344555556689999998875
No 186
>PLN02727 NAD kinase
Probab=73.78 E-value=12 Score=37.12 Aligned_cols=70 Identities=20% Similarity=0.136 Sum_probs=44.8
Q ss_pred EEEEEecCCC-----HHHHHHHHHHC-CCeEEEEcCC---------------------CCC-CCCCEEEEcCCchhHHHH
Q 030035 2 VVGVLALQGS-----FNEHIAALKRL-GVKGVEIRKP---------------------DQL-QNVSSLIIPGGESTTMAR 53 (184)
Q Consensus 2 ~IgVl~~qG~-----~~~~~~~L~~~-G~~v~~v~~~---------------------~~l-~~~DglIipGG~~~~~~~ 53 (184)
+|+|+.-.++ ..++.+.|.+. |+++.+-... +++ +.+|.+|.-||-+|.+
T Consensus 680 tVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIvLGGDGTlL-- 757 (986)
T PLN02727 680 TVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVACLGGDGVIL-- 757 (986)
T ss_pred EEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcccCCCEEEEECCcHHHH--
Confidence 6888877664 22345566665 8776643210 122 2589999999988753
Q ss_pred HHhcCChHHHHHHHHHcCCcEEEEchHH
Q 030035 54 LAEYHNLFPALREFVKMGKPVWGTCAGL 81 (184)
Q Consensus 54 l~~~~~l~~~l~~~~~~g~PvlGIC~G~ 81 (184)
...+.+...++||+||=.|.
T Consensus 758 --------rAar~~~~~~iPILGINlGr 777 (986)
T PLN02727 758 --------HASNLFRGAVPPVVSFNLGS 777 (986)
T ss_pred --------HHHHHhcCCCCCEEEEeCCC
Confidence 33444445689999998875
No 187
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=73.39 E-value=19 Score=29.88 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=40.4
Q ss_pred EEEEEe-cCCCHHHH-HHHHHHCCCeEEEEcC-------------CC---------CCCCCCEEEEcCCchhHHHHHHhc
Q 030035 2 VVGVLA-LQGSFNEH-IAALKRLGVKGVEIRK-------------PD---------QLQNVSSLIIPGGESTTMARLAEY 57 (184)
Q Consensus 2 ~IgVl~-~qG~~~~~-~~~L~~~G~~v~~v~~-------------~~---------~l~~~DglIipGG~~~~~~~l~~~ 57 (184)
||+|+. +.-++.+. .+.|++.|+++.-+.. ++ +-.++|+|++++.--.+.+
T Consensus 122 RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCTnLrt~~----- 196 (239)
T TIGR02990 122 RISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSCTALRAAT----- 196 (239)
T ss_pred EEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCCCchhHH-----
Confidence 678765 44455554 4678999999876531 00 1247899999974322211
Q ss_pred CChHHHHHHHHHcCCcEEEE
Q 030035 58 HNLFPALREFVKMGKPVWGT 77 (184)
Q Consensus 58 ~~l~~~l~~~~~~g~PvlGI 77 (184)
..+.|.+. -||||+-.
T Consensus 197 --vi~~lE~~--lGkPVlsS 212 (239)
T TIGR02990 197 --CAQRIEQA--IGKPVVTS 212 (239)
T ss_pred --HHHHHHHH--HCCCEEEH
Confidence 33444443 39999863
No 188
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=72.92 E-value=32 Score=28.01 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=22.2
Q ss_pred CEEEEEecCCCHHHHH-HHHHHCCCeEEE
Q 030035 1 MVVGVLALQGSFNEHI-AALKRLGVKGVE 28 (184)
Q Consensus 1 m~IgVl~~qG~~~~~~-~~L~~~G~~v~~ 28 (184)
|||+|+.-.|...+.+ +-..++|.+++-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTA 29 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTA 29 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEE
Confidence 9999999999998854 666677877653
No 189
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=72.62 E-value=6.6 Score=33.14 Aligned_cols=36 Identities=31% Similarity=0.512 Sum_probs=25.5
Q ss_pred CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHH
Q 030035 36 QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (184)
Q Consensus 36 ~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~ 81 (184)
+++|.+|.-||-+|.. ...+.+...++||+||=.|.
T Consensus 75 ~~~D~ii~lGGDGT~L----------~~~~~~~~~~~Pilgin~G~ 110 (285)
T PF01513_consen 75 EGVDLIIVLGGDGTFL----------RAARLFGDYDIPILGINTGT 110 (285)
T ss_dssp CCSSEEEEEESHHHHH----------HHHHHCTTST-EEEEEESSS
T ss_pred cCCCEEEEECCCHHHH----------HHHHHhccCCCcEEeecCCC
Confidence 5899999999988753 33334433589999998774
No 190
>PRK06444 prephenate dehydrogenase; Provisional
Probab=72.22 E-value=10 Score=30.48 Aligned_cols=38 Identities=11% Similarity=0.213 Sum_probs=31.9
Q ss_pred CEEEEEecCCCHHHHH-HHHHHCCCeEEEEcCCCCCCCCCEEEEcC
Q 030035 1 MVVGVLALQGSFNEHI-AALKRLGVKGVEIRKPDQLQNVSSLIIPG 45 (184)
Q Consensus 1 m~IgVl~~qG~~~~~~-~~L~~~G~~v~~v~~~~~l~~~DglIipG 45 (184)
|||+|+.-.|....+. +.|++.|..+. +.++|.+||.=
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~-------~~~~DlVilav 39 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY-------IKKADHAFLSV 39 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE-------ECCCCEEEEeC
Confidence 8999999889998865 78899999875 46889999964
No 191
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=72.11 E-value=15 Score=29.72 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=27.1
Q ss_pred EEEEEec--CCCHHH-----HHHHHHHCCCeEEEEcCCCC-------C-----CCCCEEEEcCC
Q 030035 2 VVGVLAL--QGSFNE-----HIAALKRLGVKGVEIRKPDQ-------L-----QNVSSLIIPGG 46 (184)
Q Consensus 2 ~IgVl~~--qG~~~~-----~~~~L~~~G~~v~~v~~~~~-------l-----~~~DglIipGG 46 (184)
||||+.- ...|.. +.+.+++.|.++.+.....+ + ..+|++|+.+.
T Consensus 1 ~igv~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~ 64 (282)
T cd06318 1 KIGFSQYTLNSPFFAALTEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPV 64 (282)
T ss_pred CeeEEeccccCHHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 5777653 222222 34567778998887653211 1 36899999764
No 192
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=71.51 E-value=40 Score=26.86 Aligned_cols=46 Identities=24% Similarity=0.326 Sum_probs=27.7
Q ss_pred EEEEEec--CCCH-H----HHHHHHHHCCCeEEEEcCCCC-------C-----CCCCEEEEcCCc
Q 030035 2 VVGVLAL--QGSF-N----EHIAALKRLGVKGVEIRKPDQ-------L-----QNVSSLIIPGGE 47 (184)
Q Consensus 2 ~IgVl~~--qG~~-~----~~~~~L~~~G~~v~~v~~~~~-------l-----~~~DglIipGG~ 47 (184)
+||++.- ...| . .+.+++++.|+++.++....+ + .++|++|+..+.
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~~ 65 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHGR 65 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 4777653 2222 2 234567888999888753211 1 378999996543
No 193
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=70.94 E-value=17 Score=27.38 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=32.4
Q ss_pred CEEEEEecCCCHHHHH-HHHHHCC--CeEEEEcC-----------------------------CCCCCCCCEEEEcCCc
Q 030035 1 MVVGVLALQGSFNEHI-AALKRLG--VKGVEIRK-----------------------------PDQLQNVSSLIIPGGE 47 (184)
Q Consensus 1 m~IgVl~~qG~~~~~~-~~L~~~G--~~v~~v~~-----------------------------~~~l~~~DglIipGG~ 47 (184)
|||+|+...|++..+. ..|...+ -++.++.. .+++.++|.+|+..|.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGV 79 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTST
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccc
Confidence 8999999889888755 3444433 34554432 2457899999999985
No 194
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.76 E-value=14 Score=31.24 Aligned_cols=64 Identities=14% Similarity=0.081 Sum_probs=40.4
Q ss_pred EEEEEecCCC-HH----HHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHH-cCCcEE
Q 030035 2 VVGVLALQGS-FN----EHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVK-MGKPVW 75 (184)
Q Consensus 2 ~IgVl~~qG~-~~----~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~-~g~Pvl 75 (184)
+|+++.-... -. .+.+.|++.|+++..- ..++|.+|.-||-+|.+ ...+.+.. .+.|++
T Consensus 4 ~i~iv~~~~~~a~~~~~~l~~~l~~~g~~~~~~-----~~~~D~vi~lGGDGT~L----------~a~~~~~~~~~~pil 68 (264)
T PRK03501 4 NLFFFYKRDKELVEKVKPLKKIAEEYGFTVVDH-----PKNANIIVSIGGDGTFL----------QAVRKTGFREDCLYA 68 (264)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCEEEcC-----CCCccEEEEECCcHHHH----------HHHHHhcccCCCeEE
Confidence 5777765443 11 1334567788876632 24689999999988753 23333332 368999
Q ss_pred EEch-H
Q 030035 76 GTCA-G 80 (184)
Q Consensus 76 GIC~-G 80 (184)
||=. |
T Consensus 69 gIn~~G 74 (264)
T PRK03501 69 GISTKD 74 (264)
T ss_pred eEecCC
Confidence 9998 6
No 195
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=70.59 E-value=36 Score=24.32 Aligned_cols=70 Identities=19% Similarity=0.203 Sum_probs=42.0
Q ss_pred EEEEEecCCCHH--H-HHHHHHHCCCeEEEEcCC-------CCCCCCCEEEEcC--CchhHHHHHHhcCChHHHHHHHHH
Q 030035 2 VVGVLALQGSFN--E-HIAALKRLGVKGVEIRKP-------DQLQNVSSLIIPG--GESTTMARLAEYHNLFPALREFVK 69 (184)
Q Consensus 2 ~IgVl~~qG~~~--~-~~~~L~~~G~~v~~v~~~-------~~l~~~DglIipG--G~~~~~~~l~~~~~l~~~l~~~~~ 69 (184)
||-+....++.. + ....+.+.|..+....+. ..+.+-|.+|+-. |+... ..+.++.+.+
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~---------~~~~~~~a~~ 72 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDE---------LLNLLPHLKR 72 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHH---------HHHHHHHHHH
Confidence 455655544432 2 234566778877766432 2234557777755 33332 4566677777
Q ss_pred cCCcEEEEchH
Q 030035 70 MGKPVWGTCAG 80 (184)
Q Consensus 70 ~g~PvlGIC~G 80 (184)
.|.|+++|+..
T Consensus 73 ~g~~vi~iT~~ 83 (128)
T cd05014 73 RGAPIIAITGN 83 (128)
T ss_pred CCCeEEEEeCC
Confidence 89999999974
No 196
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=69.87 E-value=25 Score=29.90 Aligned_cols=77 Identities=17% Similarity=0.237 Sum_probs=42.6
Q ss_pred CEEEEEecCC--CHHHHHHHHHHCC--CeEEEEcCC-----------------CCC---CCCCEEEE--cCCchhHHHHH
Q 030035 1 MVVGVLALQG--SFNEHIAALKRLG--VKGVEIRKP-----------------DQL---QNVSSLII--PGGESTTMARL 54 (184)
Q Consensus 1 m~IgVl~~qG--~~~~~~~~L~~~G--~~v~~v~~~-----------------~~l---~~~DglIi--pGG~~~~~~~l 54 (184)
.||||+.-.. .+.++.+.+++.+ +++.++... ... ..+|.||| .||.-..+..+
T Consensus 15 ~~I~vITs~~gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~F 94 (319)
T PF02601_consen 15 KRIAVITSPTGAAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAF 94 (319)
T ss_pred CEEEEEeCCchHHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhccc
Confidence 3799987643 3666777776654 455554321 111 25899988 44543332222
Q ss_pred HhcCChHHHHHHHHHcCCcEEEEchHHH
Q 030035 55 AEYHNLFPALREFVKMGKPVWGTCAGLI 82 (184)
Q Consensus 55 ~~~~~l~~~l~~~~~~g~PvlGIC~G~Q 82 (184)
. -.+..+...+..+||+ +.-||.
T Consensus 95 N----~e~varai~~~~~Pvi-saIGHe 117 (319)
T PF02601_consen 95 N----DEEVARAIAASPIPVI-SAIGHE 117 (319)
T ss_pred C----hHHHHHHHHhCCCCEE-EecCCC
Confidence 1 1344555566789986 334443
No 197
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=69.59 E-value=11 Score=28.53 Aligned_cols=36 Identities=14% Similarity=0.267 Sum_probs=24.8
Q ss_pred HHHHHHHHCCCeEEEEc---CC-C--------CCCCCCEEEEcCCchh
Q 030035 14 EHIAALKRLGVKGVEIR---KP-D--------QLQNVSSLIIPGGEST 49 (184)
Q Consensus 14 ~~~~~L~~~G~~v~~v~---~~-~--------~l~~~DglIipGG~~~ 49 (184)
.+.+.|++.|+++.... +. + .++++|.||.+||.+.
T Consensus 31 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g~ 78 (144)
T TIGR00177 31 LLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTGV 78 (144)
T ss_pred HHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 35577999999887543 22 1 1247999999998654
No 198
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=69.04 E-value=11 Score=31.86 Aligned_cols=30 Identities=17% Similarity=0.149 Sum_probs=24.6
Q ss_pred CEEEEEecCCCHHH---HHHHHHHCCCeEEEEc
Q 030035 1 MVVGVLALQGSFNE---HIAALKRLGVKGVEIR 30 (184)
Q Consensus 1 m~IgVl~~qG~~~~---~~~~L~~~G~~v~~v~ 30 (184)
|||+||.......+ +.+++++.|+++..+.
T Consensus 1 m~~~i~~~~~s~~s~~~~~~a~~~~g~~v~~i~ 33 (300)
T PRK10446 1 MKIAILSRDGTLYSCKRLREAAIQRGHLVEILD 33 (300)
T ss_pred CeEEEEecCCcchhHHHHHHHHHHcCCeEEEEe
Confidence 89999997666444 7789999999998875
No 199
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=68.57 E-value=16 Score=29.03 Aligned_cols=45 Identities=24% Similarity=0.318 Sum_probs=28.9
Q ss_pred CEEEEEec--CCCHHHHHHH----HHHC-CCeEEEEcCC------------------------CCCCCCCEEEEcC
Q 030035 1 MVVGVLAL--QGSFNEHIAA----LKRL-GVKGVEIRKP------------------------DQLQNVSSLIIPG 45 (184)
Q Consensus 1 m~IgVl~~--qG~~~~~~~~----L~~~-G~~v~~v~~~------------------------~~l~~~DglIipG 45 (184)
|||.|+.. .|+-..+.+. +++. |+++.+++-+ +++.++|+||+.-
T Consensus 1 ~kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GS 76 (197)
T TIGR01755 1 VKVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGT 76 (197)
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEe
Confidence 68888764 5676665554 4444 8887765421 3346799999854
No 200
>PRK03670 competence damage-inducible protein A; Provisional
Probab=68.54 E-value=17 Score=30.48 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=31.0
Q ss_pred CEEEEEec-----CC-----CHHHHHHHHHHCCCeEEEE---cCC-C-------C-CC-CCCEEEEcCCc
Q 030035 1 MVVGVLAL-----QG-----SFNEHIAALKRLGVKGVEI---RKP-D-------Q-LQ-NVSSLIIPGGE 47 (184)
Q Consensus 1 m~IgVl~~-----qG-----~~~~~~~~L~~~G~~v~~v---~~~-~-------~-l~-~~DglIipGG~ 47 (184)
||++||.. .| |..-+.+.|++.|+++..+ .+. + . +. .+|.+|++||-
T Consensus 1 m~a~Ii~iGdEll~G~i~dtN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGl 70 (252)
T PRK03670 1 MFAEIITVGDELLTGNTVDSNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGL 70 (252)
T ss_pred CEEEEEEeCCcCcCCeEEehhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCc
Confidence 78888763 33 3344567899999987654 222 1 1 23 47999999984
No 201
>PRK06703 flavodoxin; Provisional
Probab=68.52 E-value=16 Score=27.40 Aligned_cols=43 Identities=12% Similarity=0.120 Sum_probs=28.1
Q ss_pred CEEEEEec--CCCHHHHHHH----HHHCCCeEEEEcC----CCCCCCCCEEEE
Q 030035 1 MVVGVLAL--QGSFNEHIAA----LKRLGVKGVEIRK----PDQLQNVSSLII 43 (184)
Q Consensus 1 m~IgVl~~--qG~~~~~~~~----L~~~G~~v~~v~~----~~~l~~~DglIi 43 (184)
|||.|+.. .||-..+.+. |+..|+++.+.+. ..++.++|.|+|
T Consensus 2 mkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~vii 54 (151)
T PRK06703 2 AKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMDAEELLAYDGIIL 54 (151)
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCCHHHHhcCCcEEE
Confidence 57777754 5666555544 5556777766542 235778999988
No 202
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=68.41 E-value=29 Score=29.38 Aligned_cols=70 Identities=21% Similarity=0.276 Sum_probs=43.1
Q ss_pred CEEEEEecCCCH------HHHHHHHHHCCCeEEEEcCC----C--------CCCCCCEEEEcCCchhHHHHHHhcCChHH
Q 030035 1 MVVGVLALQGSF------NEHIAALKRLGVKGVEIRKP----D--------QLQNVSSLIIPGGESTTMARLAEYHNLFP 62 (184)
Q Consensus 1 m~IgVl~~qG~~------~~~~~~L~~~G~~v~~v~~~----~--------~l~~~DglIipGG~~~~~~~l~~~~~l~~ 62 (184)
|+|||......- ......++..+.++...... . +-+.+|.++.-||-++. ..
T Consensus 1 ~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~ivvlGGDGtl----------L~ 70 (281)
T COG0061 1 KKVGIVGRPDKPEALKIAKRLYEFLKFKGVTVEVDQELAEELKDFADYVDDDEEKADLIVVLGGDGTL----------LR 70 (281)
T ss_pred CeEEEEecCCcHHHHHHHHHHHHHHHhcCceEEEechhhhhcccccccccccccCceEEEEeCCcHHH----------HH
Confidence 678887765542 22334455566665554321 1 11458888888887764 33
Q ss_pred HHHHHHHcCCcEEEEchH
Q 030035 63 ALREFVKMGKPVWGTCAG 80 (184)
Q Consensus 63 ~l~~~~~~g~PvlGIC~G 80 (184)
..+.+.+.++|++||=.|
T Consensus 71 ~~~~~~~~~~pilgin~G 88 (281)
T COG0061 71 AARLLARLDIPVLGINLG 88 (281)
T ss_pred HHHHhccCCCCEEEEeCC
Confidence 344555567999999999
No 203
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=68.40 E-value=53 Score=25.38 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=24.5
Q ss_pred CHHHHHHHHH----HCCCeEEEEcCC----------CCCCCCCEEEE-cCCch
Q 030035 11 SFNEHIAALK----RLGVKGVEIRKP----------DQLQNVSSLII-PGGES 48 (184)
Q Consensus 11 ~~~~~~~~L~----~~G~~v~~v~~~----------~~l~~~DglIi-pGG~~ 48 (184)
++.++.+.++ +.|+++....+. +..+++|++|| ||++.
T Consensus 27 tl~~i~~~~~~~a~~~g~~v~~~QSN~EGelId~I~~a~~~~dgiiINpga~T 79 (146)
T PRK05395 27 TLADIEALLEEEAAELGVELEFFQSNHEGELIDRIHEARDGADGIIINPGAYT 79 (146)
T ss_pred CHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhcccCCcEEEECchHHH
Confidence 3555555554 468888887543 11246899999 88764
No 204
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=68.31 E-value=14 Score=28.69 Aligned_cols=69 Identities=16% Similarity=0.213 Sum_probs=44.0
Q ss_pred ecCCCHHHHHHHHHH-CCC-eEEEEcCCCC-CCCCCEEEEcCCc--hhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHH
Q 030035 7 ALQGSFNEHIAALKR-LGV-KGVEIRKPDQ-LQNVSSLIIPGGE--STTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (184)
Q Consensus 7 ~~qG~~~~~~~~L~~-~G~-~v~~v~~~~~-l~~~DglIipGG~--~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~ 81 (184)
+..||-..+.+++.+ ++. ++..+..... +.++|.|++..+- ++.-. .+.+.|++.....+-++|||...
T Consensus 6 S~TGNTkkvA~aI~~~l~~~~~~~~~~~~~~~~~yD~i~lG~w~d~G~~d~------~~~~fl~~l~~KkV~lF~T~G~~ 79 (160)
T PF12641_consen 6 SRTGNTKKVAEAIAEALGAKDIVSVEEPPEDLEDYDLIFLGFWIDKGTPDK------DMKEFLKKLKGKKVALFGTAGAG 79 (160)
T ss_pred CCCChHHHHHHHHHHHCCCceeEeccccccCCCCCCEEEEEcCccCCCCCH------HHHHHHHHccCCeEEEEEecCCC
Confidence 467999888887755 566 6666655444 8899999997752 11111 13445555444456788998643
No 205
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=68.26 E-value=9.8 Score=33.40 Aligned_cols=54 Identities=19% Similarity=0.326 Sum_probs=37.5
Q ss_pred HHHHHHHCCCeEEEEcC---CCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEc
Q 030035 15 HIAALKRLGVKGVEIRK---PDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (184)
Q Consensus 15 ~~~~L~~~G~~v~~v~~---~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC 78 (184)
..+.|.+.|++...+.. ..++..+|.+|=-||.+|-. ... -++++..+||+||=
T Consensus 80 ~~~~l~k~giesklv~R~~lsq~i~waD~VisvGGDGTfL---~Aa-------srv~~~~~PViGvN 136 (395)
T KOG4180|consen 80 CQEELSKAGIESKLVSRNDLSQPIRWADMVISVGGDGTFL---LAA-------SRVIDDSKPVIGVN 136 (395)
T ss_pred HHHHHhhCCcceeeeehhhccCcCchhhEEEEecCcccee---ehh-------hhhhccCCceeeec
Confidence 44667788999888752 24588999999999987642 110 11445689999983
No 206
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=68.07 E-value=45 Score=25.80 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=24.3
Q ss_pred CHHHHHHHHHH----CCCeEEEEcCCC----------CCCCCCEEEE-cCCch
Q 030035 11 SFNEHIAALKR----LGVKGVEIRKPD----------QLQNVSSLII-PGGES 48 (184)
Q Consensus 11 ~~~~~~~~L~~----~G~~v~~v~~~~----------~l~~~DglIi-pGG~~ 48 (184)
++.++.+.+++ .|+++....+.. ..+++|++|| ||++.
T Consensus 27 tl~~i~~~~~~~a~~~g~~~~~~QSN~EGelId~i~~a~~~~dgiIINpga~T 79 (146)
T PRK13015 27 TLADVEALCRAAAEALGLEVEFRQSNHEGELIDWIHEARGDVAGIVINPGAYT 79 (146)
T ss_pred CHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhhhcCCEEEEcchHHh
Confidence 45555555544 688888875431 1246899999 88764
No 207
>PRK03673 hypothetical protein; Provisional
Probab=67.72 E-value=16 Score=32.72 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=31.0
Q ss_pred CEEEEEec-----CC-----CHHHHHHHHHHCCCeEEEEc---CC-C--------CCCCCCEEEEcCCc
Q 030035 1 MVVGVLAL-----QG-----SFNEHIAALKRLGVKGVEIR---KP-D--------QLQNVSSLIIPGGE 47 (184)
Q Consensus 1 m~IgVl~~-----qG-----~~~~~~~~L~~~G~~v~~v~---~~-~--------~l~~~DglIipGG~ 47 (184)
||+.|++. .| |-.-+.+.|++.|+++.... +. + -+..+|.+|++||-
T Consensus 2 ~~v~Iis~GdEll~G~i~dtN~~~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGl 70 (396)
T PRK03673 2 LRVEMLSTGDEVLHGQIVDTNAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGL 70 (396)
T ss_pred CEEEEEEecccCCCCeEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCC
Confidence 68888874 23 23335577999999876542 22 1 13578999999984
No 208
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=67.63 E-value=48 Score=27.63 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=32.2
Q ss_pred EEEEEecC--CC------HHHHHHHHHHCCCeEEEEc--CCCC-------C--CCCCEEEEcCCchhH
Q 030035 2 VVGVLALQ--GS------FNEHIAALKRLGVKGVEIR--KPDQ-------L--QNVSSLIIPGGESTT 50 (184)
Q Consensus 2 ~IgVl~~q--G~------~~~~~~~L~~~G~~v~~v~--~~~~-------l--~~~DglIipGG~~~~ 50 (184)
|++++... |+ +.++.+.|++.|.++.+.. ...+ . .++|.||+-||-+|.
T Consensus 3 ~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTl 70 (293)
T TIGR00147 3 EAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGTI 70 (293)
T ss_pred eEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCChH
Confidence 78888776 54 2345566888898876543 2211 1 357899999997764
No 209
>PRK00549 competence damage-inducible protein A; Provisional
Probab=67.43 E-value=12 Score=33.49 Aligned_cols=47 Identities=19% Similarity=0.250 Sum_probs=31.9
Q ss_pred CEEEEEec-----CC-----CHHHHHHHHHHCCCeEEEE---cCC-C--------CCCCCCEEEEcCCc
Q 030035 1 MVVGVLAL-----QG-----SFNEHIAALKRLGVKGVEI---RKP-D--------QLQNVSSLIIPGGE 47 (184)
Q Consensus 1 m~IgVl~~-----qG-----~~~~~~~~L~~~G~~v~~v---~~~-~--------~l~~~DglIipGG~ 47 (184)
||++|++. .| |...+.+.|++.|+++..+ .+. + -..++|.||++||-
T Consensus 1 m~~~ii~~G~Ell~G~i~DtN~~~L~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVItTGGl 69 (414)
T PRK00549 1 MKAEIIAVGTELLLGQIVNTNAQFLSEKLAELGIDVYHQTVVGDNPERLLSALEIAEERSDLIITTGGL 69 (414)
T ss_pred CEEEEEEecccccCCceeEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHhccCCCEEEECCCC
Confidence 88998864 34 2334567899999987654 222 1 13578999999984
No 210
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=66.96 E-value=33 Score=26.57 Aligned_cols=48 Identities=17% Similarity=0.277 Sum_probs=30.6
Q ss_pred CEEEEEecCC--------CHHHHHHHHHHCCCeEEEE---cCC-C-------C---CCCCCEEEEcCCch
Q 030035 1 MVVGVLALQG--------SFNEHIAALKRLGVKGVEI---RKP-D-------Q---LQNVSSLIIPGGES 48 (184)
Q Consensus 1 m~IgVl~~qG--------~~~~~~~~L~~~G~~v~~v---~~~-~-------~---l~~~DglIipGG~~ 48 (184)
.||+|+.... |-..+...|++.|+++... .+. + + ..++|.+|++||.+
T Consensus 5 ~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg 74 (163)
T TIGR02667 5 LRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTG 74 (163)
T ss_pred cEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 3678875432 3334557799999987654 222 1 1 23699999999854
No 211
>PRK06756 flavodoxin; Provisional
Probab=66.61 E-value=22 Score=26.54 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=28.8
Q ss_pred CEEEEEec--CCCHHHHHHH----HHHCCCeEEEEcC-----CCCCCCCCEEEEc
Q 030035 1 MVVGVLAL--QGSFNEHIAA----LKRLGVKGVEIRK-----PDQLQNVSSLIIP 44 (184)
Q Consensus 1 m~IgVl~~--qG~~~~~~~~----L~~~G~~v~~v~~-----~~~l~~~DglIip 44 (184)
|||.|+.. .||-..+.+. +++.|.++.+.+. ..++.++|.|++.
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~d~vi~g 56 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSPEASILEQYDGIILG 56 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccCCHHHHhcCCeEEEE
Confidence 68888754 5676655544 5566887766532 2346789999885
No 212
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=66.48 E-value=24 Score=27.61 Aligned_cols=70 Identities=17% Similarity=0.153 Sum_probs=40.8
Q ss_pred HHHHHHHHHHCCCeEEEE---cCC-C--------CCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEch
Q 030035 12 FNEHIAALKRLGVKGVEI---RKP-D--------QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (184)
Q Consensus 12 ~~~~~~~L~~~G~~v~~v---~~~-~--------~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~ 79 (184)
..-+.+.|++.|+++..+ .+. + .++.+|.||.+||.+.+-+. -..+.++++. |+++.+.=-
T Consensus 21 ~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G~t~~D-----~t~ea~~~~~--~~~l~~~~e 93 (170)
T cd00885 21 AAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLGPTHDD-----LTREAVAKAF--GRPLVLDEE 93 (170)
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCCCCCCC-----hHHHHHHHHh--CCCcccCHH
Confidence 334567899999987654 222 1 12578999999986443111 1234444443 566666666
Q ss_pred HHHHHHHhh
Q 030035 80 GLIFLANKA 88 (184)
Q Consensus 80 G~QlLa~~~ 88 (184)
-.+.|-+.+
T Consensus 94 ~~~~i~~~~ 102 (170)
T cd00885 94 ALERIEARF 102 (170)
T ss_pred HHHHHHHHH
Confidence 655555544
No 213
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=65.77 E-value=41 Score=25.23 Aligned_cols=69 Identities=26% Similarity=0.399 Sum_probs=40.2
Q ss_pred EEEEEecCCCHHHHHHHHHHC---C--CeEEEEcCCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEE
Q 030035 2 VVGVLALQGSFNEHIAALKRL---G--VKGVEIRKPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWG 76 (184)
Q Consensus 2 ~IgVl~~qG~~~~~~~~L~~~---G--~~v~~v~~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlG 76 (184)
+|+|+.-. .+.+..+.+... | +.+..+.+..++.+||.|++..+..... .+.++.+ .++|+|=
T Consensus 29 ~icv~g~~-~~~~~L~~l~~~~~~~~~i~v~~~~~~~~~~~C~ilyi~~~~~~~~---------~~i~~~~--~~~~vLt 96 (145)
T PF13689_consen 29 RICVLGDD-PFAEALSTLAGKQVGGRPIRVRRLSSPNEISGCHILYISSSESSQL---------PEILRKL--PGKPVLT 96 (145)
T ss_pred EEEEECCh-HHHHHHHHhhhcccCCCcEEEEECCCCcccccccEEEECCCChHHH---------HHHHHhc--CCCceEE
Confidence 46665432 244444444321 2 3444455667788999999998775432 2223322 3789998
Q ss_pred EchHHH
Q 030035 77 TCAGLI 82 (184)
Q Consensus 77 IC~G~Q 82 (184)
|+-+-.
T Consensus 97 Isd~~~ 102 (145)
T PF13689_consen 97 ISDGEG 102 (145)
T ss_pred EECCCC
Confidence 886644
No 214
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=65.63 E-value=20 Score=28.47 Aligned_cols=30 Identities=20% Similarity=0.134 Sum_probs=19.1
Q ss_pred CEEEEEec--CCCHHHHH----HHHHH-CCCeEEEEc
Q 030035 1 MVVGVLAL--QGSFNEHI----AALKR-LGVKGVEIR 30 (184)
Q Consensus 1 m~IgVl~~--qG~~~~~~----~~L~~-~G~~v~~v~ 30 (184)
|||.|+.. .|+-..+. +.+++ .|+++.+++
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~ 38 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKR 38 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEe
Confidence 58888865 45555544 44555 788887664
No 215
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=65.56 E-value=43 Score=23.31 Aligned_cols=69 Identities=16% Similarity=0.150 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHCCCeEEEE------cCC-----CCCCCCCEEEEcCCc-hhHHHHHHhcCChHHHHHHHH-HcCCcEEEE
Q 030035 11 SFNEHIAALKRLGVKGVEI------RKP-----DQLQNVSSLIIPGGE-STTMARLAEYHNLFPALREFV-KMGKPVWGT 77 (184)
Q Consensus 11 ~~~~~~~~L~~~G~~v~~v------~~~-----~~l~~~DglIipGG~-~~~~~~l~~~~~l~~~l~~~~-~~g~PvlGI 77 (184)
....+.+.+++.|++.... ... ..+.++|.+|++=+. +-. +...+++.. +.++|++=.
T Consensus 11 ~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~---------~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 11 RERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHN---------AMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred cHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChH---------HHHHHHHHHHHcCCcEEEE
Confidence 3455668899999998888 111 245688999987654 222 122233333 458998755
Q ss_pred c-hHHHHHHHhh
Q 030035 78 C-AGLIFLANKA 88 (184)
Q Consensus 78 C-~G~QlLa~~~ 88 (184)
= .|..-|.+.+
T Consensus 82 ~~~~~~~l~~~l 93 (97)
T PF10087_consen 82 RSRGVSSLERAL 93 (97)
T ss_pred CCCCHHHHHHHH
Confidence 4 5666665554
No 216
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=65.21 E-value=16 Score=27.09 Aligned_cols=74 Identities=19% Similarity=0.232 Sum_probs=40.7
Q ss_pred CEEEEEecC----CCHHHH----HHHHHHCCCeEEEEcCCC-------------------------CCCCCCEEEEcC--
Q 030035 1 MVVGVLALQ----GSFNEH----IAALKRLGVKGVEIRKPD-------------------------QLQNVSSLIIPG-- 45 (184)
Q Consensus 1 m~IgVl~~q----G~~~~~----~~~L~~~G~~v~~v~~~~-------------------------~l~~~DglIipG-- 45 (184)
|||.++.-. |+-..+ .+.+++.|+++.+++-.+ ++.++|++|+.-
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~ 80 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPV 80 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEeecE
Confidence 899888642 433333 344666788888875221 234689999843
Q ss_pred ---CchhHHHHHHhcCChHHHHH---HHHHcCCcEEEEchH
Q 030035 46 ---GESTTMARLAEYHNLFPALR---EFVKMGKPVWGTCAG 80 (184)
Q Consensus 46 ---G~~~~~~~l~~~~~l~~~l~---~~~~~g~PvlGIC~G 80 (184)
+.+..+.. +++++. ...-.+||++.++.|
T Consensus 81 y~~~~s~~lK~------~lD~~~~~~~~~~~~K~~~~i~~~ 115 (152)
T PF03358_consen 81 YNGSVSGQLKN------FLDRLSCWFRRALRGKPVAIIAVG 115 (152)
T ss_dssp BTTBE-HHHHH------HHHTHHHTHTTTTTTSEEEEEEEE
T ss_pred EcCcCChhhhH------HHHHhccccccccCCCEEEEEEEe
Confidence 33433333 333332 111248999888643
No 217
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=65.04 E-value=63 Score=25.86 Aligned_cols=67 Identities=21% Similarity=0.234 Sum_probs=37.4
Q ss_pred EEEEEec--CCCHHH-----HHHHHHHCCCeEEEEcC--CCC----------C--CCCCEEEEcCCchhHHHHHHhcCCh
Q 030035 2 VVGVLAL--QGSFNE-----HIAALKRLGVKGVEIRK--PDQ----------L--QNVSSLIIPGGESTTMARLAEYHNL 60 (184)
Q Consensus 2 ~IgVl~~--qG~~~~-----~~~~L~~~G~~v~~v~~--~~~----------l--~~~DglIipGG~~~~~~~l~~~~~l 60 (184)
||||+.- ...|.. +.+++++.|.++.+... ..+ + ..+|++|+.+..+...
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~--------- 71 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVNL--------- 71 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChHHh---------
Confidence 6888764 332322 23556778998877631 111 1 3689998865433321
Q ss_pred HHHHHHHHHcCCcEEEE
Q 030035 61 FPALREFVKMGKPVWGT 77 (184)
Q Consensus 61 ~~~l~~~~~~g~PvlGI 77 (184)
.+.++.+.+.++|+..+
T Consensus 72 ~~~~~~~~~~~iPvV~~ 88 (275)
T cd06320 72 VPAVERAKKKGIPVVNV 88 (275)
T ss_pred HHHHHHHHHCCCeEEEE
Confidence 12234444568888665
No 218
>PRK12359 flavodoxin FldB; Provisional
Probab=64.33 E-value=27 Score=27.45 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=29.2
Q ss_pred CEEEEEec--CCCHHHHHHHHHH-CCCe-EEE--Ec--CCCCCCCCCEEEEc
Q 030035 1 MVVGVLAL--QGSFNEHIAALKR-LGVK-GVE--IR--KPDQLQNVSSLIIP 44 (184)
Q Consensus 1 m~IgVl~~--qG~~~~~~~~L~~-~G~~-v~~--v~--~~~~l~~~DglIip 44 (184)
|||+|+.. .||-..+.+.+.+ +|.+ +.+ +. .++++.++|.||+.
T Consensus 1 Mki~I~Y~S~TGNTe~vAe~I~~~lg~~~v~v~~i~~~~~~~l~~yD~iIlG 52 (172)
T PRK12359 1 MKIGLFYGSSTCYTEMAAEKIRDIIGEELVDLHNLKDDPPKLMEQYDVLILG 52 (172)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHhCCCeEEEEEcccCChhHHccCCEEEEE
Confidence 89999864 6788888877654 5643 222 22 23457789998883
No 219
>PRK06455 riboflavin synthase; Provisional
Probab=62.96 E-value=55 Score=25.53 Aligned_cols=76 Identities=16% Similarity=0.185 Sum_probs=41.0
Q ss_pred CEEEEEecCCCHHH----HHHHHHHCC--CeEEEEcCCC---------CC---CCCCEEEEcC--CchhHHHHHHhcCCh
Q 030035 1 MVVGVLALQGSFNE----HIAALKRLG--VKGVEIRKPD---------QL---QNVSSLIIPG--GESTTMARLAEYHNL 60 (184)
Q Consensus 1 m~IgVl~~qG~~~~----~~~~L~~~G--~~v~~v~~~~---------~l---~~~DglIipG--G~~~~~~~l~~~~~l 60 (184)
|||||+.-.-|-.. -.+.|++.| .++.+++-|. .+ ..||++|--| |.....+..... -.
T Consensus 2 ~kigIV~s~fn~~~L~~gAi~~L~~~g~~~~I~v~~VPGa~ELP~aakkL~~~~~yDaVIaLG~VG~t~h~d~Va~~-vS 80 (155)
T PRK06455 2 MKIGIADTTFARVDMGSAAIDELRKLDPSAKIIRYTVPGIKDLPVAAKKLIEEEGCDIVMALGMPGPTEKDKYCAHE-AS 80 (155)
T ss_pred cEEEEEEEecchHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHhcCCCCEEEEecceeccCcchhHHHH-HH
Confidence 68999876555433 235677744 5555554331 11 4799999988 443332232221 01
Q ss_pred HHHHHHHHHcCCcEEEE
Q 030035 61 FPALREFVKMGKPVWGT 77 (184)
Q Consensus 61 ~~~l~~~~~~g~PvlGI 77 (184)
.-.++--++.++||.-+
T Consensus 81 ~GL~~lsL~t~~PVi~v 97 (155)
T PRK06455 81 IGLIMAQLMTNKHIIEV 97 (155)
T ss_pred HHHHHHHhhhCCCEEEE
Confidence 22333344567887655
No 220
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=62.35 E-value=37 Score=28.44 Aligned_cols=77 Identities=21% Similarity=0.258 Sum_probs=42.6
Q ss_pred EEEEEecCCCH------HHHHHHHHHCC--CeEEEEc---CCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHc
Q 030035 2 VVGVLALQGSF------NEHIAALKRLG--VKGVEIR---KPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKM 70 (184)
Q Consensus 2 ~IgVl~~qG~~------~~~~~~L~~~G--~~v~~v~---~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~ 70 (184)
|||.+.+.|-. .++.+.|-... .++++.. +...+.+.|..++-||-.+. +. .+.++++.++
T Consensus 5 kva~~~L~gC~GC~~slldl~E~L~dll~~~div~~~~l~D~keiPEvDValVEGsV~~e-e~-------lE~v~ElRek 76 (247)
T COG1941 5 KVATVWLTGCSGCHMSLLDLYEKLLDLLEDADIVYCPTLVDEKEIPEVDVALVEGSVCDE-EE-------LELVKELREK 76 (247)
T ss_pred EEEEEEeccccchHHHHHhHHHHHHHhhhhhcEEEeecccccccCCcccEEEEecccCcH-HH-------HHHHHHHHHh
Confidence 78998888732 23223332221 2444433 23346679999999987632 11 3334444333
Q ss_pred CC--cEEEEch---HHHHHHH
Q 030035 71 GK--PVWGTCA---GLIFLAN 86 (184)
Q Consensus 71 g~--PvlGIC~---G~QlLa~ 86 (184)
-+ --||+|+ |.|=|.+
T Consensus 77 akivVA~GsCA~~Ggv~~~~~ 97 (247)
T COG1941 77 AKIVVALGSCAVTGGVQGLRN 97 (247)
T ss_pred CcEEEEEecchhcCCchhhhh
Confidence 32 3478885 6666666
No 221
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=62.27 E-value=53 Score=24.30 Aligned_cols=45 Identities=20% Similarity=0.141 Sum_probs=27.8
Q ss_pred CEEEEEe--cCCCHHHHHHH----HHHCCCeEEE-Ec------CCCCCCCCCEEEEcC
Q 030035 1 MVVGVLA--LQGSFNEHIAA----LKRLGVKGVE-IR------KPDQLQNVSSLIIPG 45 (184)
Q Consensus 1 m~IgVl~--~qG~~~~~~~~----L~~~G~~v~~-v~------~~~~l~~~DglIipG 45 (184)
|||.|+. ..||-..+.+. ++..|.++.. .+ ...++.++|.++|..
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~d~iilgs 58 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQKDGHEVDILHRIGTLADAPLDPENYDLVFLGT 58 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhhCCeeEEecccccccccCcCChhhCCEEEEEc
Confidence 8888875 35776666555 4445777652 21 112456789988854
No 222
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=62.07 E-value=64 Score=25.78 Aligned_cols=67 Identities=22% Similarity=0.363 Sum_probs=34.4
Q ss_pred EEEEEe--cCCCHHH-HH----HHHHHC---CC--eEEEEcCCCC-----------C-CCCCEEEEcCCchhHHHHHHhc
Q 030035 2 VVGVLA--LQGSFNE-HI----AALKRL---GV--KGVEIRKPDQ-----------L-QNVSSLIIPGGESTTMARLAEY 57 (184)
Q Consensus 2 ~IgVl~--~qG~~~~-~~----~~L~~~---G~--~v~~v~~~~~-----------l-~~~DglIipGG~~~~~~~l~~~ 57 (184)
||||+. ++..|.. +. +.+++. |. ++.+.....+ + .++|++|+.+......
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~------ 74 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPASPTAL------ 74 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhh------
Confidence 678776 2332322 33 456667 87 4455543211 1 4799999976432221
Q ss_pred CChHHHHHHHHHcCCcEEEE
Q 030035 58 HNLFPALREFVKMGKPVWGT 77 (184)
Q Consensus 58 ~~l~~~l~~~~~~g~PvlGI 77 (184)
.+.++.+.+.++|++.+
T Consensus 75 ---~~~l~~~~~~~iPvv~~ 91 (272)
T cd06300 75 ---NPVIEEACEAGIPVVSF 91 (272)
T ss_pred ---HHHHHHHHHCCCeEEEE
Confidence 12233444457777653
No 223
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=61.64 E-value=57 Score=24.89 Aligned_cols=72 Identities=19% Similarity=0.252 Sum_probs=38.2
Q ss_pred CEEEEEecCCCHH-------HHHHHHHHCCC---eEEE--EcCCCC----------CCCCCEEEEcC----CchhHHHHH
Q 030035 1 MVVGVLALQGSFN-------EHIAALKRLGV---KGVE--IRKPDQ----------LQNVSSLIIPG----GESTTMARL 54 (184)
Q Consensus 1 m~IgVl~~qG~~~-------~~~~~L~~~G~---~v~~--v~~~~~----------l~~~DglIipG----G~~~~~~~l 54 (184)
+||+|+.-+-|-. ...+.|++.|+ ++.. |.-.-+ -.++|++|.-| |+...++.+
T Consensus 4 ~ri~IV~s~~n~~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~~~~~Davi~lG~VI~G~T~H~~~v 83 (144)
T PF00885_consen 4 LRIAIVVSRFNEEITDRLLEGALEELKRHGVAEENIEVIRVPGAFELPLAAKRLAESGRYDAVIALGCVIRGETDHFEYV 83 (144)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHHCSTESEEEEEEEEE--SSTHHHHH
T ss_pred CEEEEEEEeccHHHHHHHHHHHHHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhcccCccEEEEeccccCCCchHHHHH
Confidence 3789888665422 13355677787 4444 432211 14699999888 443333333
Q ss_pred HhcCChHHHHHH-HHHcCCcE
Q 030035 55 AEYHNLFPALRE-FVKMGKPV 74 (184)
Q Consensus 55 ~~~~~l~~~l~~-~~~~g~Pv 74 (184)
... ...-|.+ -++.++||
T Consensus 84 ~~~--v~~gl~~lsl~~~~PV 102 (144)
T PF00885_consen 84 ANA--VSRGLMDLSLEYGIPV 102 (144)
T ss_dssp HHH--HHHHHHHHHHHHTSEE
T ss_pred HHH--HHHHHHHHhccCCccE
Confidence 332 2232333 34568887
No 224
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=61.10 E-value=35 Score=30.66 Aligned_cols=35 Identities=29% Similarity=0.394 Sum_probs=24.8
Q ss_pred HHHHHHHCCCeEEEEc---CC---------CCCCCCCEEEEcCCchh
Q 030035 15 HIAALKRLGVKGVEIR---KP---------DQLQNVSSLIIPGGEST 49 (184)
Q Consensus 15 ~~~~L~~~G~~v~~v~---~~---------~~l~~~DglIipGG~~~ 49 (184)
+..+|++.|++++... +. +.++++|.||++||.|.
T Consensus 208 l~a~l~~~G~e~~~~giv~Dd~~~l~~~i~~a~~~~DviItsGG~Sv 254 (404)
T COG0303 208 LAALLERAGGEVVDLGIVPDDPEALREAIEKALSEADVIITSGGVSV 254 (404)
T ss_pred HHHHHHHcCCceeeccccCCCHHHHHHHHHHhhhcCCEEEEeCCccC
Confidence 5577899999877653 21 12357999999998653
No 225
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=61.01 E-value=45 Score=27.93 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=28.4
Q ss_pred CEEEEEecCC----------CHHHHHHHHHHCCCeEEEEcCCCC-------CCCCCEEEE
Q 030035 1 MVVGVLALQG----------SFNEHIAALKRLGVKGVEIRKPDQ-------LQNVSSLII 43 (184)
Q Consensus 1 m~IgVl~~qG----------~~~~~~~~L~~~G~~v~~v~~~~~-------l~~~DglIi 43 (184)
|||+||. .| .-..+.++|++.|.++..+....+ +.++|.++.
T Consensus 1 ~~v~v~~-gg~s~e~~~sl~s~~~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~ 59 (299)
T PRK14571 1 MRVALLM-GGVSREREISLRSGERVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFN 59 (299)
T ss_pred CeEEEEe-CCCCCCccchHHHHHHHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEE
Confidence 8999865 33 123466889999999988864322 346787755
No 226
>PRK01215 competence damage-inducible protein A; Provisional
Probab=60.85 E-value=43 Score=28.18 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=30.9
Q ss_pred CEEEEEec-----CC-----CHHHHHHHHHHCCCeEEEE---cCC-C--------CCCCCCEEEEcCCchh
Q 030035 1 MVVGVLAL-----QG-----SFNEHIAALKRLGVKGVEI---RKP-D--------QLQNVSSLIIPGGEST 49 (184)
Q Consensus 1 m~IgVl~~-----qG-----~~~~~~~~L~~~G~~v~~v---~~~-~--------~l~~~DglIipGG~~~ 49 (184)
+|++|++. .| |-.-+.+.|++.|+++... .+. + -++.+|.+|++||-+.
T Consensus 4 ~~v~Ii~~GdEll~G~i~dtn~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g~ 74 (264)
T PRK01215 4 WFAWIITIGNELLIGRTVNTNASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGLGP 74 (264)
T ss_pred CEEEEEEEChhccCCeEEEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 37788763 23 2333557799999987644 222 1 1246899999998543
No 227
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=60.77 E-value=28 Score=33.42 Aligned_cols=78 Identities=19% Similarity=0.169 Sum_probs=48.4
Q ss_pred EEEEEecCCCHHHH--------------------HHHHHHCCCeEEEEcC-----CCCCCCCCEEEEcCCchhHHH-HHH
Q 030035 2 VVGVLALQGSFNEH--------------------IAALKRLGVKGVEIRK-----PDQLQNVSSLIIPGGESTTMA-RLA 55 (184)
Q Consensus 2 ~IgVl~~qG~~~~~--------------------~~~L~~~G~~v~~v~~-----~~~l~~~DglIipGG~~~~~~-~l~ 55 (184)
||+||.-.|...++ +++|.-+-++|..++- ..-+++.|.||=.|...+... --.
T Consensus 440 kvavLn~WG~~RsW~~~~v~ha~~ykq~ysy~GvlE~LSG~p~dV~FisFdDi~~~gi~~didViIN~G~a~ta~SGG~~ 519 (719)
T TIGR02336 440 KVAVLNSWGKMRSWMAFQVAHALPYKQTYSYYGILECLSGMPVEVEFISFDDILEHGIDSDIDVIINGGDADTAWSGGDV 519 (719)
T ss_pred eEEEEecccccchHhhhhhhhhhhhhhhhhHHHHHHHhcCCCeeEEEecHHHHhhcCCCcCCcEEEecCcccccccCccc
Confidence 89999988864332 2223333457777752 233578898888875443321 011
Q ss_pred h-cCChHHHHHHHHHcCCcEEEEch
Q 030035 56 E-YHNLFPALREFVKMGKPVWGTCA 79 (184)
Q Consensus 56 ~-~~~l~~~l~~~~~~g~PvlGIC~ 79 (184)
| +..+.+.|++++++|.-++|++-
T Consensus 520 W~d~~~~~aLr~fV~~GGglIGVgD 544 (719)
T TIGR02336 520 WTNPKLVETVRAWVRGGGGFVGVGE 544 (719)
T ss_pred cCCHHHHHHHHHHHHcCCeEEEEEC
Confidence 1 12467899999999988888874
No 228
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=59.86 E-value=53 Score=26.33 Aligned_cols=33 Identities=15% Similarity=0.084 Sum_probs=22.1
Q ss_pred HHHHHHHCCCeEEEEcCCCC-------C-----CCCCEEEEcCCc
Q 030035 15 HIAALKRLGVKGVEIRKPDQ-------L-----QNVSSLIIPGGE 47 (184)
Q Consensus 15 ~~~~L~~~G~~v~~v~~~~~-------l-----~~~DglIipGG~ 47 (184)
+.+++++.|+++.+.....+ + ..+||+|+.+..
T Consensus 21 ~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 65 (273)
T cd06309 21 IKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPVV 65 (273)
T ss_pred HHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 44667778999988753211 1 368999996643
No 229
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=59.50 E-value=53 Score=26.20 Aligned_cols=45 Identities=20% Similarity=0.227 Sum_probs=27.0
Q ss_pred EEEEEecC-CC--HHH----HHHHHHHCCCeEEEEcC--CCC-------C-----CCCCEEEEcCC
Q 030035 2 VVGVLALQ-GS--FNE----HIAALKRLGVKGVEIRK--PDQ-------L-----QNVSSLIIPGG 46 (184)
Q Consensus 2 ~IgVl~~q-G~--~~~----~~~~L~~~G~~v~~v~~--~~~-------l-----~~~DglIipGG 46 (184)
||||+.-. .+ +.. +.+.+++.|..+.+... ..+ + .++||+|+.+.
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~ 66 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPT 66 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 68887622 22 222 33557778999888642 111 1 36899999654
No 230
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=58.49 E-value=28 Score=24.48 Aligned_cols=65 Identities=28% Similarity=0.446 Sum_probs=37.8
Q ss_pred CEEEEEecCCCHHH-HHHHHHHC--CCeEEEEcCC--------------------CC-C--CCCCEEEEcCCchhHHHHH
Q 030035 1 MVVGVLALQGSFNE-HIAALKRL--GVKGVEIRKP--------------------DQ-L--QNVSSLIIPGGESTTMARL 54 (184)
Q Consensus 1 m~IgVl~~qG~~~~-~~~~L~~~--G~~v~~v~~~--------------------~~-l--~~~DglIipGG~~~~~~~l 54 (184)
|||||+.. |++.. |...+.+. +.++.-+-++ ++ + .+.|.++|......-
T Consensus 1 i~v~iiG~-G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h---- 75 (120)
T PF01408_consen 1 IRVGIIGA-GSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSH---- 75 (120)
T ss_dssp EEEEEEST-SHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGH----
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcch----
Confidence 68898877 55544 55666665 4455433221 11 1 368999887654322
Q ss_pred HhcCChHHHHHHHHHcCCcEEE
Q 030035 55 AEYHNLFPALREFVKMGKPVWG 76 (184)
Q Consensus 55 ~~~~~l~~~l~~~~~~g~PvlG 76 (184)
.+.++++++.|++|+-
T Consensus 76 ------~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 76 ------AEIAKKALEAGKHVLV 91 (120)
T ss_dssp ------HHHHHHHHHTTSEEEE
T ss_pred ------HHHHHHHHHcCCEEEE
Confidence 3455666667777764
No 231
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.87 E-value=41 Score=30.17 Aligned_cols=29 Identities=28% Similarity=0.208 Sum_probs=20.8
Q ss_pred EEEEEecCCCHHHHHHHHHHCCCeEEEEc
Q 030035 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (184)
Q Consensus 2 ~IgVl~~qG~~~~~~~~L~~~G~~v~~v~ 30 (184)
||+|+.+.+.=....+.|.+.|+++....
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D 44 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFD 44 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCEEEEEC
Confidence 68887776655577778888887766654
No 232
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=57.52 E-value=31 Score=25.46 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=24.6
Q ss_pred HHHHHHHHCCCeEEEEc---CC-C--------CCCCCCEEEEcCCchh
Q 030035 14 EHIAALKRLGVKGVEIR---KP-D--------QLQNVSSLIIPGGEST 49 (184)
Q Consensus 14 ~~~~~L~~~G~~v~~v~---~~-~--------~l~~~DglIipGG~~~ 49 (184)
-+.+.|++.|.++.... +. + .++++|.+|..||.+.
T Consensus 23 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g~ 70 (133)
T cd00758 23 ALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTGV 70 (133)
T ss_pred HHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCCC
Confidence 35577899999876652 22 1 1346999999998654
No 233
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.27 E-value=69 Score=28.93 Aligned_cols=29 Identities=10% Similarity=-0.141 Sum_probs=21.4
Q ss_pred EEEEEecCCCHHHHHHHHHHCCCeEEEEc
Q 030035 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (184)
Q Consensus 2 ~IgVl~~qG~~~~~~~~L~~~G~~v~~v~ 30 (184)
||+|+.+.-.=.+..+.|.+.|+++.+..
T Consensus 10 ~v~v~G~G~sG~~~~~~l~~~g~~v~~~d 38 (468)
T PRK04690 10 RVALWGWGREGRAAYRALRAHLPAQALTL 38 (468)
T ss_pred EEEEEccchhhHHHHHHHHHcCCEEEEEc
Confidence 68888774355567788999998877764
No 234
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=56.20 E-value=69 Score=28.87 Aligned_cols=76 Identities=22% Similarity=0.271 Sum_probs=42.6
Q ss_pred CEEEEEecC-C-CHHHHHHHHHHCC--CeEEEEcCC-----------------CCCCCCCEEEE--cCCchhHHHHHHhc
Q 030035 1 MVVGVLALQ-G-SFNEHIAALKRLG--VKGVEIRKP-----------------DQLQNVSSLII--PGGESTTMARLAEY 57 (184)
Q Consensus 1 m~IgVl~~q-G-~~~~~~~~L~~~G--~~v~~v~~~-----------------~~l~~~DglIi--pGG~~~~~~~l~~~ 57 (184)
.||||+.-. | .+.++.+.+++.. +++.+.... +...++|.||| .||.-+....+.
T Consensus 130 ~~i~vits~~~aa~~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn-- 207 (432)
T TIGR00237 130 KRVGVITSQTGAALADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFN-- 207 (432)
T ss_pred CEEEEEeCCccHHHHHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcC--
Confidence 379998754 4 4667777777654 566655421 11235898888 444333322221
Q ss_pred CChHHHHHHHHHcCCcEEEEchHH
Q 030035 58 HNLFPALREFVKMGKPVWGTCAGL 81 (184)
Q Consensus 58 ~~l~~~l~~~~~~g~PvlGIC~G~ 81 (184)
-.+..+...+..+||+ ..-||
T Consensus 208 --~e~~~rai~~~~~Pvi-s~iGH 228 (432)
T TIGR00237 208 --DEKVARAIFLSKIPII-SAVGH 228 (432)
T ss_pred --cHHHHHHHHcCCCCEE-EecCc
Confidence 1344555556788987 34454
No 235
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=55.76 E-value=25 Score=28.72 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=41.8
Q ss_pred HHHHHHHCCCeEEEEc--CCC------CCCCCCEEEEcCCch-hHHHHHHhcCChHHHHHHHHHcCCcEEEEchHH
Q 030035 15 HIAALKRLGVKGVEIR--KPD------QLQNVSSLIIPGGES-TTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (184)
Q Consensus 15 ~~~~L~~~G~~v~~v~--~~~------~l~~~DglIipGG~~-~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~ 81 (184)
+...|++.|+++.+.. +++ .|+++|.||+-+-.. .. +.+ ...+.+++++++|+=++|+=.|+
T Consensus 28 ~~~~L~~~gf~V~~~~~~d~~~~~~~~~L~~~D~lV~~~~~~~~~---l~~--eq~~~l~~~V~~GgGlv~lHsg~ 98 (215)
T cd03142 28 IAAALAEYGFDVQTATLDEPEHGLTEEVLAETDVLLWWGHIAHDE---VKD--EIVERVHRRVLDGMGLIVLHSGH 98 (215)
T ss_pred HHHHHHhcCcEEEEEeccCccccCCHhHHhcCCEEEEeCCCCcCc---CCH--HHHHHHHHHHHcCCCEEEECCCc
Confidence 4577899999988443 322 478999999833111 11 111 13567888999999999998877
No 236
>PRK10949 protease 4; Provisional
Probab=54.77 E-value=32 Score=32.59 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=23.9
Q ss_pred CCCCEEEE----cCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEc
Q 030035 36 QNVSSLII----PGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (184)
Q Consensus 36 ~~~DglIi----pGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC 78 (184)
++..+||| |||.....+. +.+.|+++.+.||||..-+
T Consensus 363 ~~vkaVvLrInSpGGs~~ase~------i~~~i~~~r~~gKPVvas~ 403 (618)
T PRK10949 363 PKVKAIVLRVNSPGGSVTASEV------IRAELAAARAAGKPVVVSM 403 (618)
T ss_pred CCCcEEEEEecCCCCcHHHHHH------HHHHHHHHHhcCCcEEEEE
Confidence 35668888 7776544333 3445666656799999854
No 237
>PRK07116 flavodoxin; Provisional
Probab=54.40 E-value=37 Score=25.82 Aligned_cols=27 Identities=15% Similarity=0.052 Sum_probs=17.3
Q ss_pred CEEEEEec--CCCHHHHHHHHHH-CCCeEE
Q 030035 1 MVVGVLAL--QGSFNEHIAALKR-LGVKGV 27 (184)
Q Consensus 1 m~IgVl~~--qG~~~~~~~~L~~-~G~~v~ 27 (184)
||+.|+.+ .||-..+++.+.+ .+.++.
T Consensus 3 ~k~lIvY~S~tGnT~~iA~~Ia~~l~~d~~ 32 (160)
T PRK07116 3 NKTLVAYFSATGTTKKVAEKLAEVTGADLF 32 (160)
T ss_pred CcEEEEEECCCCcHHHHHHHHHHHhcCCeE
Confidence 67777765 5777777776654 455443
No 238
>PRK10481 hypothetical protein; Provisional
Probab=54.39 E-value=57 Score=26.92 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=43.5
Q ss_pred EEEEEe-cCCCHHHHHHHHHHCCCeEEEEc-CC------------CCC--CCCCEEEEcC-CchhHHHHHHhcCChHHHH
Q 030035 2 VVGVLA-LQGSFNEHIAALKRLGVKGVEIR-KP------------DQL--QNVSSLIIPG-GESTTMARLAEYHNLFPAL 64 (184)
Q Consensus 2 ~IgVl~-~qG~~~~~~~~L~~~G~~v~~v~-~~------------~~l--~~~DglIipG-G~~~~~~~l~~~~~l~~~l 64 (184)
||||+. ++.....+.+.+.+.|.++.... ++ ..+ .++|.|++.+ |+++.+ .+.+
T Consensus 131 riGVitP~~~qi~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~~~---------~~~l 201 (224)
T PRK10481 131 QVGVIVPVEEQLAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQRH---------RDLL 201 (224)
T ss_pred eEEEEEeCHHHHHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCHHH---------HHHH
Confidence 688876 46677777888888898877553 11 112 4799999977 776532 3345
Q ss_pred HHHHHcCCcEEEEc
Q 030035 65 REFVKMGKPVWGTC 78 (184)
Q Consensus 65 ~~~~~~g~PvlGIC 78 (184)
++. -|+||+-.+
T Consensus 202 e~~--lg~PVI~~n 213 (224)
T PRK10481 202 QKA--LDVPVLLSN 213 (224)
T ss_pred HHH--HCcCEEcHH
Confidence 544 389998654
No 239
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=54.19 E-value=45 Score=25.30 Aligned_cols=48 Identities=21% Similarity=0.282 Sum_probs=30.3
Q ss_pred EEEEEe-----cCCC-----HHHHHHHHHHCCCeEEEEc---CC-CC--------CC--CCCEEEEcCCchh
Q 030035 2 VVGVLA-----LQGS-----FNEHIAALKRLGVKGVEIR---KP-DQ--------LQ--NVSSLIIPGGEST 49 (184)
Q Consensus 2 ~IgVl~-----~qG~-----~~~~~~~L~~~G~~v~~v~---~~-~~--------l~--~~DglIipGG~~~ 49 (184)
||+|+. ..|. -.-+.+.|++.|+++.... +. ++ ++ .+|.+|..||.+.
T Consensus 2 ~~~ii~~~~e~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~ 73 (152)
T cd00886 2 RAAVLTVSDTRSAGEAEDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGL 73 (152)
T ss_pred EEEEEEEcCcccCCCCccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCC
Confidence 677764 2332 2234577999999876543 22 11 23 6999999998654
No 240
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=53.94 E-value=1.3e+02 Score=25.59 Aligned_cols=67 Identities=16% Similarity=0.131 Sum_probs=38.3
Q ss_pred EEEEEec--CCCHHH-----HHHHHHHCCCeEEEEcCCCC----------C--CCCCEEEEcCCchhHHHHHHhcCChHH
Q 030035 2 VVGVLAL--QGSFNE-----HIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFP 62 (184)
Q Consensus 2 ~IgVl~~--qG~~~~-----~~~~L~~~G~~v~~v~~~~~----------l--~~~DglIipGG~~~~~~~l~~~~~l~~ 62 (184)
+||++.- ...|.. +.+.+++.|+++.+.....+ + .++|++|+.+..... ..+
T Consensus 27 ~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~~~~~---------~~~ 97 (330)
T PRK10355 27 KIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQV---------LSN 97 (330)
T ss_pred eEEEEecCCCchHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh---------HHH
Confidence 5777763 223322 34556778999888754211 1 379999997643221 123
Q ss_pred HHHHHHHcCCcEEEE
Q 030035 63 ALREFVKMGKPVWGT 77 (184)
Q Consensus 63 ~l~~~~~~g~PvlGI 77 (184)
.++.+.+.+.|++-+
T Consensus 98 ~l~~~~~~~iPvV~i 112 (330)
T PRK10355 98 VIKEAKQEGIKVLAY 112 (330)
T ss_pred HHHHHHHCCCeEEEE
Confidence 344555567777655
No 241
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=53.32 E-value=2.8 Score=32.43 Aligned_cols=42 Identities=12% Similarity=0.305 Sum_probs=22.7
Q ss_pred CCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEch
Q 030035 34 QLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (184)
Q Consensus 34 ~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~ 79 (184)
++. .|.++|-||-.+.-..... .+..+.|.+.. .+.+.|||.
T Consensus 78 ~~~-~D~vVlmGGLAMP~~~v~~-e~v~~li~ki~--~~~iiGiCF 119 (147)
T PF09897_consen 78 DPH-PDVVVLMGGLAMPKSGVTP-EDVNELIKKIS--PKKIIGICF 119 (147)
T ss_dssp -S--EEEEEEEGGGGSTTTS--H-HHHHHHHHHHE--EEEEEEEEE
T ss_pred CCC-CCEEEEEcccccCCCCCCH-HHHHHHHHHhC--cCCEEEEeh
Confidence 344 8999999995432111111 02344555542 344999997
No 242
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=53.26 E-value=1.1e+02 Score=24.24 Aligned_cols=32 Identities=28% Similarity=0.435 Sum_probs=20.9
Q ss_pred HHHHHHCCCeEEEEcCCCC-----------C-CCCCEEEEcCCc
Q 030035 16 IAALKRLGVKGVEIRKPDQ-----------L-QNVSSLIIPGGE 47 (184)
Q Consensus 16 ~~~L~~~G~~v~~v~~~~~-----------l-~~~DglIipGG~ 47 (184)
.+.+++.|+++.+.....+ + .++|++|+.+..
T Consensus 22 ~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~ 65 (277)
T cd06319 22 KSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPTN 65 (277)
T ss_pred HHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 3556778999887753211 1 478999986643
No 243
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=52.90 E-value=1.2e+02 Score=24.24 Aligned_cols=52 Identities=27% Similarity=0.321 Sum_probs=28.5
Q ss_pred HHHHHC-CCeEEEEcCCCC-------C-----CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEE
Q 030035 17 AALKRL-GVKGVEIRKPDQ-------L-----QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (184)
Q Consensus 17 ~~L~~~-G~~v~~v~~~~~-------l-----~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGI 77 (184)
+.+++. |+++.+.....+ + ..+|++|+.+...+. ..+.++++.+.++|+.-+
T Consensus 23 ~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~---------~~~~~~~~~~~~ipvV~~ 87 (270)
T cd06308 23 REASNYPDVELIIADAADDNSKQVADIENFIRQGVDLLIISPNEAAP---------LTPVVEEAYRAGIPVILL 87 (270)
T ss_pred HHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecCchhh---------chHHHHHHHHCCCCEEEe
Confidence 445555 888877643211 1 368999997643221 112334444567777654
No 244
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=52.05 E-value=1.2e+02 Score=25.47 Aligned_cols=69 Identities=19% Similarity=0.231 Sum_probs=39.4
Q ss_pred CEEEEEecCCCHHH-HHHHHHH--CCCeEEEEcCC---------------------CC-CCCCCEEEEcCCchhHHHHHH
Q 030035 1 MVVGVLALQGSFNE-HIAALKR--LGVKGVEIRKP---------------------DQ-LQNVSSLIIPGGESTTMARLA 55 (184)
Q Consensus 1 m~IgVl~~qG~~~~-~~~~L~~--~G~~v~~v~~~---------------------~~-l~~~DglIipGG~~~~~~~l~ 55 (184)
|||||+.+ |.... |.+.|.+ .++++..+.+. ++ +.+.|.+++.-+....
T Consensus 7 irIGIIG~-G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h----- 80 (271)
T PRK13302 7 LRVAIAGL-GAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL----- 80 (271)
T ss_pred eEEEEECc-cHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH-----
Confidence 58999876 66544 6677765 36666544210 11 3567999887553221
Q ss_pred hcCChHHHHHHHHHcCCcEEEEchH
Q 030035 56 EYHNLFPALREFVKMGKPVWGTCAG 80 (184)
Q Consensus 56 ~~~~l~~~l~~~~~~g~PvlGIC~G 80 (184)
.+...++++.|++++-.+.|
T Consensus 81 -----~e~~~~aL~aGk~Vi~~s~g 100 (271)
T PRK13302 81 -----RAIVEPVLAAGKKAIVLSVG 100 (271)
T ss_pred -----HHHHHHHHHcCCcEEEecch
Confidence 23334444566777665555
No 245
>PRK11914 diacylglycerol kinase; Reviewed
Probab=51.77 E-value=74 Score=26.79 Aligned_cols=50 Identities=30% Similarity=0.392 Sum_probs=30.9
Q ss_pred CEEEEEecC--C--C----HHHHHHHHHHCCCeEEEEcC--CC-------C--CCCCCEEEEcCCchhH
Q 030035 1 MVVGVLALQ--G--S----FNEHIAALKRLGVKGVEIRK--PD-------Q--LQNVSSLIIPGGESTT 50 (184)
Q Consensus 1 m~IgVl~~q--G--~----~~~~~~~L~~~G~~v~~v~~--~~-------~--l~~~DglIipGG~~~~ 50 (184)
||+.++..+ | . +.+..+.|++.|.++.++.+ .. + ..++|.||+-||-+|.
T Consensus 9 ~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGTi 77 (306)
T PRK11914 9 GKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGVI 77 (306)
T ss_pred ceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchHH
Confidence 367776542 3 2 33566788889988765432 11 1 1467999999986654
No 246
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.48 E-value=71 Score=28.54 Aligned_cols=29 Identities=28% Similarity=0.197 Sum_probs=23.8
Q ss_pred EEEEEecCCCHHHHHHHHHHCCCeEEEEc
Q 030035 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (184)
Q Consensus 2 ~IgVl~~qG~~~~~~~~L~~~G~~v~~v~ 30 (184)
||.|+.+-|.=.+..+.|.+.|+++....
T Consensus 11 ~i~viG~G~~G~~~a~~l~~~G~~v~~~D 39 (460)
T PRK01390 11 TVAVFGLGGSGLATARALVAGGAEVIAWD 39 (460)
T ss_pred EEEEEeecHhHHHHHHHHHHCCCEEEEEC
Confidence 68899888877777899999999877664
No 247
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=51.07 E-value=57 Score=29.12 Aligned_cols=76 Identities=9% Similarity=0.084 Sum_probs=39.7
Q ss_pred EEEEecCCCHHH-HHHHHHHCCCeEEEEcC---------------------CCCCCCCCEEEEcCCchhH---HHHHHhc
Q 030035 3 VGVLALQGSFNE-HIAALKRLGVKGVEIRK---------------------PDQLQNVSSLIIPGGESTT---MARLAEY 57 (184)
Q Consensus 3 IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~---------------------~~~l~~~DglIipGG~~~~---~~~l~~~ 57 (184)
|-++.+.|.-.+ +.+.|.+.|+++..... .+.++++|.+|++-|-+.. +....+.
T Consensus 2 ~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~~ 81 (448)
T TIGR01082 2 IHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKER 81 (448)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHc
Confidence 445555555444 66677777766655431 1224568989887664322 2222221
Q ss_pred ----CChHHHHHHHHHcCCcEEEEch
Q 030035 58 ----HNLFPALREFVKMGKPVWGTCA 79 (184)
Q Consensus 58 ----~~l~~~l~~~~~~g~PvlGIC~ 79 (184)
.+-.+++.++.+ ++++.||..
T Consensus 82 ~i~v~~~~el~~~~~~-~~~~IaITG 106 (448)
T TIGR01082 82 GIPVIRRAEMLAELMR-FRHSIAVAG 106 (448)
T ss_pred CCceEeHHHHHHHHHh-cCcEEEEEC
Confidence 112344444443 457888874
No 248
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=51.07 E-value=65 Score=29.27 Aligned_cols=28 Identities=25% Similarity=0.147 Sum_probs=15.3
Q ss_pred EEEEEecCCCHHHHHHHHHHCCCeEEEE
Q 030035 2 VVGVLALQGSFNEHIAALKRLGVKGVEI 29 (184)
Q Consensus 2 ~IgVl~~qG~~~~~~~~L~~~G~~v~~v 29 (184)
||.|+.+-..=.+..+.|+..|+++...
T Consensus 14 ~v~V~G~G~sG~aa~~~L~~~G~~v~~~ 41 (488)
T PRK03369 14 PVLVAGAGVTGRAVLAALTRFGARPTVC 41 (488)
T ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEE
Confidence 4555554443344445666666665554
No 249
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=50.81 E-value=57 Score=28.13 Aligned_cols=38 Identities=24% Similarity=0.441 Sum_probs=24.2
Q ss_pred CCCEEEE----cCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHH
Q 030035 37 NVSSLII----PGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (184)
Q Consensus 37 ~~DglIi----pGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~ 81 (184)
+.++|+| |||.....+. +.+.|+++.+.+ ||.-..-++
T Consensus 97 ~vk~vvL~inSPGG~v~as~~------i~~~l~~l~~~~-PV~v~v~~~ 138 (317)
T COG0616 97 SVKAVVLRINSPGGSVVASEL------IARALKRLRAKK-PVVVSVGGY 138 (317)
T ss_pred CCceEEEEEECcCCchhHHHH------HHHHHHHHhhcC-CEEEEECCe
Confidence 4566766 9986554333 345677776666 998775543
No 250
>PRK05569 flavodoxin; Provisional
Probab=50.69 E-value=93 Score=22.71 Aligned_cols=44 Identities=9% Similarity=0.121 Sum_probs=27.8
Q ss_pred EEEEEec--CCCHHHHHHH----HHHCCCeEEEEcCC----CCCCCCCEEEEcC
Q 030035 2 VVGVLAL--QGSFNEHIAA----LKRLGVKGVEIRKP----DQLQNVSSLIIPG 45 (184)
Q Consensus 2 ~IgVl~~--qG~~~~~~~~----L~~~G~~v~~v~~~----~~l~~~DglIipG 45 (184)
||.|+.. .||-..+.+. +++.|+++.+.+.. .++.++|+|+|.-
T Consensus 3 ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgs 56 (141)
T PRK05569 3 KVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAKVEDVLEADAVAFGS 56 (141)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCCHHHHhhCCEEEEEC
Confidence 6777655 4565555544 44568877666422 2567899999943
No 251
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=50.62 E-value=1.2e+02 Score=23.58 Aligned_cols=51 Identities=20% Similarity=0.276 Sum_probs=30.9
Q ss_pred HHHHHHCCCeEEEEcCCCC----------C--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEE
Q 030035 16 IAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (184)
Q Consensus 16 ~~~L~~~G~~v~~v~~~~~----------l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGI 77 (184)
.+++++.|+++.+.....+ + .++|++|+.+..++.. . ++.+.+.++|+..+
T Consensus 22 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~---------~--~~~~~~~~ipvv~~ 84 (264)
T cd06267 22 EEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLDDE---------L--LEELAALGIPVVLV 84 (264)
T ss_pred HHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcchH---------H--HHHHHHcCCCEEEe
Confidence 3446667888887754321 1 3799999987654331 1 44444567777655
No 252
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=50.45 E-value=1.4e+02 Score=24.33 Aligned_cols=66 Identities=11% Similarity=0.158 Sum_probs=35.1
Q ss_pred EEEEEecC--CCHH-HH----HHHHHHCCCeEEEEc-CC---C----CC-----CCCCEEEEcCCchhHHHHHHhcCChH
Q 030035 2 VVGVLALQ--GSFN-EH----IAALKRLGVKGVEIR-KP---D----QL-----QNVSSLIIPGGESTTMARLAEYHNLF 61 (184)
Q Consensus 2 ~IgVl~~q--G~~~-~~----~~~L~~~G~~v~~v~-~~---~----~l-----~~~DglIipGG~~~~~~~l~~~~~l~ 61 (184)
|||++.-. ..|. ++ .+.+++.|+++.++. .. + .+ ..+|++|+.+..... ..
T Consensus 1 ~i~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~~~~~~---------~~ 71 (294)
T cd06316 1 KAAIVMHTSGSDWSNAQVRGAKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIPVDPVS---------TA 71 (294)
T ss_pred CeEEEecCCCChHHHHHHHHHHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCchh---------hh
Confidence 68887632 2232 23 345677899887542 21 0 01 368999996533221 12
Q ss_pred HHHHHHHHcCCcEEE
Q 030035 62 PALREFVKMGKPVWG 76 (184)
Q Consensus 62 ~~l~~~~~~g~PvlG 76 (184)
+.++.+.+.|+|++.
T Consensus 72 ~~i~~~~~~~iPvV~ 86 (294)
T cd06316 72 AAYKKVAEAGIKLVF 86 (294)
T ss_pred HHHHHHHHcCCcEEE
Confidence 234444456777654
No 253
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=50.26 E-value=57 Score=31.09 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=35.2
Q ss_pred CEEEEEecCCCHHHHHHHHHHCCCeEEEEc-----C-C---------CCCCCCCEEEEcCCc
Q 030035 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIR-----K-P---------DQLQNVSSLIIPGGE 47 (184)
Q Consensus 1 m~IgVl~~qG~~~~~~~~L~~~G~~v~~v~-----~-~---------~~l~~~DglIipGG~ 47 (184)
|||.|---.+.-.++.+.|++.|++++.+. . . .++.+||.||++-..
T Consensus 4 ~~VLVTRp~~qa~~la~~L~~~G~~vi~~Pli~i~p~~~~~~l~~~l~~L~~yd~iIFTS~n 65 (656)
T PRK06975 4 FTVVVTRPDGQSAALAAQLAAAGLDVLDFPLLDIAPVADDAPLRAALARLSDYALVVFVSPN 65 (656)
T ss_pred CEEEEeCcHhHHHHHHHHHHHcCCCEEEcccEEeeCCCChHHHHHHHHhCCCCCEEEEECHH
Confidence 677777667777888999999999887652 1 1 246789999998643
No 254
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=50.18 E-value=76 Score=29.49 Aligned_cols=68 Identities=13% Similarity=0.080 Sum_probs=41.2
Q ss_pred EEEEEecCCCH-----HHHHHHHHHCCCeEEEEcC----------CCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHH
Q 030035 2 VVGVLALQGSF-----NEHIAALKRLGVKGVEIRK----------PDQLQNVSSLIIPGGESTTMARLAEYHNLFPALRE 66 (184)
Q Consensus 2 ~IgVl~~qG~~-----~~~~~~L~~~G~~v~~v~~----------~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~ 66 (184)
|||++.-.|.. ..+.+.|+ .++++..+.. +++|.++|.|||.|-..+--+ .-...|++
T Consensus 185 ~V~~l~ghGE~~~~~~~~l~~~L~-~~y~v~~l~l~~~~~~~~~ip~~l~d~d~LvI~~P~~~ls~------~e~~~Ldq 257 (552)
T TIGR03521 185 RIAVLKGNGELADLQIADLVSTLK-EYYFIAPFTLDSVAANPAKTLADLKKFDLIVIAKPTEAFSE------REKYILDQ 257 (552)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHH-hcCceeeecchhcccCcccccccccCcCEEEEeCCCccCCH------HHHHHHHH
Confidence 68888877743 34456666 5666655432 233458999999885311100 12456788
Q ss_pred HHHcCCcEEE
Q 030035 67 FVKMGKPVWG 76 (184)
Q Consensus 67 ~~~~g~PvlG 76 (184)
|+.+|.+++-
T Consensus 258 fl~~GG~ll~ 267 (552)
T TIGR03521 258 YIMNGGKALF 267 (552)
T ss_pred HHHcCCeEEE
Confidence 8888776653
No 255
>PRK09267 flavodoxin FldA; Validated
Probab=50.04 E-value=53 Score=25.02 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=27.9
Q ss_pred CEEEEEec--CCCHHHHHHHHHH-CC-CeEEEE--cC--CCCCCCCCEEEEcC
Q 030035 1 MVVGVLAL--QGSFNEHIAALKR-LG-VKGVEI--RK--PDQLQNVSSLIIPG 45 (184)
Q Consensus 1 m~IgVl~~--qG~~~~~~~~L~~-~G-~~v~~v--~~--~~~l~~~DglIipG 45 (184)
|||.|+.. .||-..+.+.+.+ ++ .++.++ .. ..++.++|.||+..
T Consensus 2 mki~IiY~S~tGnT~~vA~~Ia~~l~~~~~~~~~~~~~~~~~l~~~d~vi~g~ 54 (169)
T PRK09267 2 AKIGIFFGSDTGNTEDIAKMIQKKLGKDVADVVDIAKASKEDFEAYDLLILGI 54 (169)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHhCCCceEEEEhhhCCHhhHhhCCEEEEEe
Confidence 68888754 5787777766544 32 233333 22 24567899998864
No 256
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=49.99 E-value=86 Score=28.59 Aligned_cols=70 Identities=24% Similarity=0.295 Sum_probs=40.4
Q ss_pred EEEEEecC-C-CHHHHHHHHHHC--CCeEEEEcCC-----------------CCCCCCCEEEE--cCCchhHHHHHHhcC
Q 030035 2 VVGVLALQ-G-SFNEHIAALKRL--GVKGVEIRKP-----------------DQLQNVSSLII--PGGESTTMARLAEYH 58 (184)
Q Consensus 2 ~IgVl~~q-G-~~~~~~~~L~~~--G~~v~~v~~~-----------------~~l~~~DglIi--pGG~~~~~~~l~~~~ 58 (184)
+|||+.-. | ...++.+.+++. .+++.+.... +...++|.||+ .||.-+. |-. .
T Consensus 137 ~IGVITS~tgAairDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiED---LW~-F 212 (440)
T COG1570 137 KIGVITSPTGAALRDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIED---LWA-F 212 (440)
T ss_pred eEEEEcCCchHHHHHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHH---Hhc-c
Confidence 69998653 4 356677777664 4566655421 34567999998 3343222 221 1
Q ss_pred ChHHHHHHHHHcCCcEE
Q 030035 59 NLFPALREFVKMGKPVW 75 (184)
Q Consensus 59 ~l~~~l~~~~~~g~Pvl 75 (184)
.=....|...+..+||.
T Consensus 213 NdE~vaRAi~~s~iPvI 229 (440)
T COG1570 213 NDEIVARAIAASRIPVI 229 (440)
T ss_pred ChHHHHHHHHhCCCCeE
Confidence 11234566667789986
No 257
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=49.95 E-value=1.5e+02 Score=24.53 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=20.2
Q ss_pred CEEEEEecCCCHHH-HHHHHHH-CCCeEEEE
Q 030035 1 MVVGVLALQGSFNE-HIAALKR-LGVKGVEI 29 (184)
Q Consensus 1 m~IgVl~~qG~~~~-~~~~L~~-~G~~v~~v 29 (184)
|||+|+...|.... +.+.+.+ .+++++.+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav 32 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAA 32 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEE
Confidence 79999888788765 5566665 46666543
No 258
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.35 E-value=92 Score=27.65 Aligned_cols=29 Identities=24% Similarity=0.186 Sum_probs=21.0
Q ss_pred EEEEEecCCCHHHHHHHHHHCCCeEEEEc
Q 030035 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (184)
Q Consensus 2 ~IgVl~~qG~~~~~~~~L~~~G~~v~~v~ 30 (184)
+|.|+...|.=.+..+.|.+.|+.+....
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~~g~~v~~~d 35 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKNGAEVAAYD 35 (445)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 67787776655566788888888776653
No 259
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=48.98 E-value=17 Score=31.68 Aligned_cols=41 Identities=27% Similarity=0.424 Sum_probs=26.4
Q ss_pred CCCCCEEEE-cCCchhHH-HHHHhcCChHHHHHHHHHcCCcEEEEch
Q 030035 35 LQNVSSLII-PGGESTTM-ARLAEYHNLFPALREFVKMGKPVWGTCA 79 (184)
Q Consensus 35 l~~~DglIi-pGG~~~~~-~~l~~~~~l~~~l~~~~~~g~PvlGIC~ 79 (184)
+.++|.||| ||+.-|.+ ..|.- .++.+.|++ ...|+.++|.
T Consensus 187 I~~AD~IviGPgSl~TSIlP~Lll-p~I~eaLr~---~~ap~i~v~n 229 (323)
T COG0391 187 IKEADLIVIGPGSLFTSILPILLL-PGIAEALRE---TVAPIVYVCN 229 (323)
T ss_pred HHhCCEEEEcCCccHhhhchhhch-hHHHHHHHh---CCCCEEEecc
Confidence 568998888 77654443 22221 245666665 5689999995
No 260
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=48.95 E-value=1.3e+02 Score=23.77 Aligned_cols=56 Identities=25% Similarity=0.303 Sum_probs=36.3
Q ss_pred HHHHHHCCCeEEEE-cCCCC-------C-----CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchH
Q 030035 16 IAALKRLGVKGVEI-RKPDQ-------L-----QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (184)
Q Consensus 16 ~~~L~~~G~~v~~v-~~~~~-------l-----~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G 80 (184)
.+++++.|.++.++ ....+ + .++|+||+....++. +.+.++++.++|+||..+=..
T Consensus 21 ~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~---------~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 21 KAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDS---------LAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTTT---------THHHHHHHHHTTSEEEEESST
T ss_pred HHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHH---------HHHHHHHHhhcCceEEEEecc
Confidence 35577789998885 32211 1 479999987654332 245566677789999886444
No 261
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=48.66 E-value=68 Score=26.21 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=45.4
Q ss_pred CEEEEEecCCCHHHHH-HHHHHCCCeEEEEcCCCC----CC-CCCEEEE----cCCchhHHHHHHhcCChHHHHHHHHHc
Q 030035 1 MVVGVLALQGSFNEHI-AALKRLGVKGVEIRKPDQ----LQ-NVSSLII----PGGESTTMARLAEYHNLFPALREFVKM 70 (184)
Q Consensus 1 m~IgVl~~qG~~~~~~-~~L~~~G~~v~~v~~~~~----l~-~~DglIi----pGG~~~~~~~l~~~~~l~~~l~~~~~~ 70 (184)
|||.|+.-.=++.+.+ ..|++.|+++..+.+.++ +. .+|.+|+ |+..+-. +...||+....
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~dlviLD~~lP~~dG~~---------~~~~iR~~~~~ 71 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQPDLVLLDLMLPDLDGLE---------LCRRLRAKKGS 71 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCEEEEECCCCCCCHHH---------HHHHHHhhcCC
Confidence 6777766555566644 789999999999976432 11 1999988 5433221 34556644335
Q ss_pred CCcEEEEchH
Q 030035 71 GKPVWGTCAG 80 (184)
Q Consensus 71 g~PvlGIC~G 80 (184)
..||+-+.+-
T Consensus 72 ~~PIi~Lta~ 81 (229)
T COG0745 72 GPPIIVLTAR 81 (229)
T ss_pred CCcEEEEECC
Confidence 6789888765
No 262
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=48.37 E-value=72 Score=28.85 Aligned_cols=29 Identities=28% Similarity=0.027 Sum_probs=19.1
Q ss_pred EEEEEecCCCHHHHHHHHHHCCCeEEEEc
Q 030035 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (184)
Q Consensus 2 ~IgVl~~qG~~~~~~~~L~~~G~~v~~v~ 30 (184)
||.|+.+.|.=....+.|.+.|+++....
T Consensus 17 ~v~v~G~G~sG~a~a~~L~~~G~~V~~~D 45 (473)
T PRK00141 17 RVLVAGAGVSGRGIAAMLSELGCDVVVAD 45 (473)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEEC
Confidence 57777766655567777777777655543
No 263
>PF09508 Lact_bio_phlase: Lacto-N-biose phosphorylase; InterPro: IPR012711 The gene which codes for this protein in gut-bacteria is located in a novel putative operon for galactose metabolism. The protein appears to be a carbohydrate-processing phosphorolytic enzyme (2.4.1.211 from EC), unlike either glycoside hydrolases or glycoside lyase. Intestinal colonisation by Bifidobacteria is important for human health, especially in paediatrics, because colonisation seems to prevent infection by some pathogenic bacteria that cause diarrhoea or other illnesses. The operon seems to be involved in intestinal colonisation by Bifidobacteria mediated by metabolism of mucin sugars. In addition, it may also resolve the question of the nature of the bifidus factor in human milk as the lacto-N-biose structure found in milk oligosaccharides. ; GO: 0016758 transferase activity, transferring hexosyl groups; PDB: 2ZUW_A 2ZUU_C 2ZUT_D 2ZUV_A 2ZUS_B.
Probab=48.22 E-value=40 Score=32.31 Aligned_cols=75 Identities=27% Similarity=0.271 Sum_probs=47.0
Q ss_pred EEEEEecCCC--------------------HHHHHHHHHHCCCeEEEEcC-----CCCCCCCCEEEEcCCchhHH----H
Q 030035 2 VVGVLALQGS--------------------FNEHIAALKRLGVKGVEIRK-----PDQLQNVSSLIIPGGESTTM----A 52 (184)
Q Consensus 2 ~IgVl~~qG~--------------------~~~~~~~L~~~G~~v~~v~~-----~~~l~~~DglIipGG~~~~~----~ 52 (184)
||+||.-.|. |..+.++|.-+-++|..++- ...++++|.||=.|...++. .
T Consensus 437 kVAvLn~WGklRsW~~~~v~Hal~ykq~ysy~GilEaLSGlp~dV~FISFdDi~~~gi~~didViINaGdA~TA~SGG~~ 516 (716)
T PF09508_consen 437 KVAVLNSWGKLRSWQCHMVAHALYYKQIYSYIGILEALSGLPFDVEFISFDDIRENGILEDIDVIINAGDAGTAWSGGEN 516 (716)
T ss_dssp EEEEEESSGGGGTTTTT-SSTT---TTTHHHHHHHHHHHTSSSEEEEEEHHHHHHH-S-TT--EEEEEESTTSTTT-GGG
T ss_pred eEEEeechhhhchhhhcccccccchhhhhhHHHHHHHhcCCCceeEEecHHHHhhcCCcccCCEEEecCcccccccCccc
Confidence 8999987763 23345666667788888862 13467899988888433332 1
Q ss_pred HHHhcCChHHHHHHHHHcCCcEEEEc
Q 030035 53 RLAEYHNLFPALREFVKMGKPVWGTC 78 (184)
Q Consensus 53 ~l~~~~~l~~~l~~~~~~g~PvlGIC 78 (184)
... ..+...||+++.+|.-.+||+
T Consensus 517 W~d--~~iv~~lr~fV~~GGGfIGVG 540 (716)
T PF09508_consen 517 WKD--PKIVTALREFVYNGGGFIGVG 540 (716)
T ss_dssp GG---HHHHHHHHHHHHTT-EEEEEE
T ss_pred cCC--HHHHHHHHHHHHcCCCEEEcC
Confidence 111 236788999999999899986
No 264
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.79 E-value=1.3e+02 Score=26.82 Aligned_cols=29 Identities=10% Similarity=-0.109 Sum_probs=25.2
Q ss_pred CEEEEEecCCCHHHHHHHHHHCCCeEEEEc
Q 030035 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (184)
Q Consensus 1 m~IgVl~~qG~~~~~~~~L~~~G~~v~~v~ 30 (184)
|||.|+.+.+.=.+..+.|+ .|.++....
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D 29 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFD 29 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEc
Confidence 89999999887778999999 999887775
No 265
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=45.99 E-value=1e+02 Score=23.68 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=24.2
Q ss_pred CHHHHHHHHH----HCCCeEEEEcCC----------CCCCCCCEEEE-cCCch
Q 030035 11 SFNEHIAALK----RLGVKGVEIRKP----------DQLQNVSSLII-PGGES 48 (184)
Q Consensus 11 ~~~~~~~~L~----~~G~~v~~v~~~----------~~l~~~DglIi-pGG~~ 48 (184)
++.++.+.++ +.|+++....+. +..+++|++|| ||++.
T Consensus 25 tl~di~~~~~~~a~~~g~~v~~~QSN~EGelId~i~~a~~~~dgiIINpga~T 77 (141)
T TIGR01088 25 TLEEIVEIIETFAAQLNVELEFFQSNSEGQLIDKIHEAEGQYDGIIINPGALT 77 (141)
T ss_pred CHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhccccCCEEEEcChHHh
Confidence 4555555544 468888877543 11246899999 88864
No 266
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=45.64 E-value=1.4e+02 Score=22.91 Aligned_cols=72 Identities=21% Similarity=0.291 Sum_probs=38.0
Q ss_pred CEEEEEecCCCH-------HHHHHHHHHCCCe---EEEEcCC---------CCC---CCCCEEEEcC----CchhHHHHH
Q 030035 1 MVVGVLALQGSF-------NEHIAALKRLGVK---GVEIRKP---------DQL---QNVSSLIIPG----GESTTMARL 54 (184)
Q Consensus 1 m~IgVl~~qG~~-------~~~~~~L~~~G~~---v~~v~~~---------~~l---~~~DglIipG----G~~~~~~~l 54 (184)
+||+|+.-+-|- ..-.+.|++.|++ +.+++-| +.+ .++|++|.-| |+..-++.+
T Consensus 8 ~ri~IV~s~fn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~s~~~DavIaLG~VIrGeT~H~e~V 87 (141)
T PLN02404 8 LRFGVVVARFNEIITKNLLEGALETFKRYSVKEENIDVVWVPGSFEIPVVAQRLAKSGKYDAILCIGAVIRGDTTHYDAV 87 (141)
T ss_pred CEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEEEEEEeCCCchhHHH
Confidence 478888755442 1123456777863 3333322 111 4699999888 443334444
Q ss_pred HhcCChHHH-HHHHHHcCCcE
Q 030035 55 AEYHNLFPA-LREFVKMGKPV 74 (184)
Q Consensus 55 ~~~~~l~~~-l~~~~~~g~Pv 74 (184)
.+. ...- .+-.++.++||
T Consensus 88 ~~~--v~~gl~~vsl~~~~PV 106 (141)
T PLN02404 88 ANS--AASGVLSAGLNSGVPC 106 (141)
T ss_pred HHH--HHHHHHHHHhccCCCE
Confidence 432 2232 33334568887
No 267
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=44.95 E-value=51 Score=27.04 Aligned_cols=77 Identities=16% Similarity=0.312 Sum_probs=40.7
Q ss_pred CEEEEEecCCC---HHH-------HHHHHHHCCCeEEEEc---CCCCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHH
Q 030035 1 MVVGVLALQGS---FNE-------HIAALKRLGVKGVEIR---KPDQLQNVSSLIIPGGESTTMARLAEYHNLFPALREF 67 (184)
Q Consensus 1 m~IgVl~~qG~---~~~-------~~~~L~~~G~~v~~v~---~~~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~ 67 (184)
+||+.+.+++- -.+ +.+.|++. +++++.. ..+++.++|.+++.|+-+..+. +..+.+++.
T Consensus 2 ~~v~~~~~~~C~GC~~s~l~~~~~~~~ll~~~-i~~~y~~~~~~~~~~~~~dil~VeG~i~~~~~------~~~~~~~~~ 74 (228)
T TIGR03294 2 ITVGYVHLSGCTGCLVSLTDNYEGLLDILDNI-ADLVYCQTLADAREIPEMDVALVEGSVCLQDE------HSLEEIKEL 74 (228)
T ss_pred ceEEEEECCCCCChHHHHHccCCcHHHHHHHh-hHheecHhhhhhccCCCccEEEEeCCCCCCcc------HHHHHHHHH
Confidence 36777776652 222 23344443 3444432 2344577999999998643321 134556665
Q ss_pred HHcCCcE--EEEc---hHHHHH
Q 030035 68 VKMGKPV--WGTC---AGLIFL 84 (184)
Q Consensus 68 ~~~g~Pv--lGIC---~G~QlL 84 (184)
.++-+-| +|.| .|.+-+
T Consensus 75 ~~~ak~vVA~GtCA~~GGi~~~ 96 (228)
T TIGR03294 75 REKAKVVVALGACAATGNFTRY 96 (228)
T ss_pred hccCCEEEEeecccccCCcccc
Confidence 5433333 6777 455433
No 268
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=44.92 E-value=1.8e+02 Score=24.01 Aligned_cols=67 Identities=16% Similarity=0.083 Sum_probs=36.5
Q ss_pred EEEEEecC--CCHHH-----HHHHHHH--CCCeEEEEcCCC-------CC-----CCCCEEEEcCCchhHHHHHHhcCCh
Q 030035 2 VVGVLALQ--GSFNE-----HIAALKR--LGVKGVEIRKPD-------QL-----QNVSSLIIPGGESTTMARLAEYHNL 60 (184)
Q Consensus 2 ~IgVl~~q--G~~~~-----~~~~L~~--~G~~v~~v~~~~-------~l-----~~~DglIipGG~~~~~~~l~~~~~l 60 (184)
||||+.-. ..|.. +.+.+++ .|.++.+..... .+ .++|++|+.+..+.. .
T Consensus 1 ~Igviv~~~~~~~~~~~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~~~~---------~ 71 (303)
T cd01539 1 KIGVFLYKFDDTFISLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDPTA---------A 71 (303)
T ss_pred CeEEEeeCCCChHHHHHHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCchhh---------H
Confidence 57877632 22322 3345666 677776664321 11 378999986543222 1
Q ss_pred HHHHHHHHHcCCcEEEE
Q 030035 61 FPALREFVKMGKPVWGT 77 (184)
Q Consensus 61 ~~~l~~~~~~g~PvlGI 77 (184)
.+.++++.+.|+||.-+
T Consensus 72 ~~~~~~~~~~giPvV~~ 88 (303)
T cd01539 72 QTVINKAKQKNIPVIFF 88 (303)
T ss_pred HHHHHHHHHCCCCEEEe
Confidence 23345555568888654
No 269
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=44.82 E-value=1.6e+02 Score=24.36 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=17.8
Q ss_pred CEEEEEecCCCHHH-HHHHHHHC--CCeEEE
Q 030035 1 MVVGVLALQGSFNE-HIAALKRL--GVKGVE 28 (184)
Q Consensus 1 m~IgVl~~qG~~~~-~~~~L~~~--G~~v~~ 28 (184)
|||||+.. |++.. +.+.+.+. ++++..
T Consensus 2 mrIgIIG~-G~iG~~ia~~l~~~~~~~elv~ 31 (265)
T PRK13304 2 LKIGIVGC-GAIASLITKAILSGRINAELYA 31 (265)
T ss_pred CEEEEECc-cHHHHHHHHHHHcCCCCeEEEE
Confidence 79999886 77754 56666664 455443
No 270
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=44.74 E-value=1.4e+02 Score=22.72 Aligned_cols=73 Identities=26% Similarity=0.320 Sum_probs=38.4
Q ss_pred CEEEEEecCCCH-------HHHHHHHHHCCCe---EEEEcCC---------CCC---CCCCEEEEcC----CchhHHHHH
Q 030035 1 MVVGVLALQGSF-------NEHIAALKRLGVK---GVEIRKP---------DQL---QNVSSLIIPG----GESTTMARL 54 (184)
Q Consensus 1 m~IgVl~~qG~~-------~~~~~~L~~~G~~---v~~v~~~---------~~l---~~~DglIipG----G~~~~~~~l 54 (184)
+||+|+.-.-|- ..-.+.|++.|+. +.+++-| +.+ .++|++|.-| |+..-++.+
T Consensus 1 ~ri~IV~s~~n~~i~~~L~~ga~~~l~~~g~~~~~i~v~~VPGa~EiP~a~~~l~~~~~~DavI~LG~VIrG~T~H~e~v 80 (138)
T TIGR00114 1 VRVGIVIARFNRDITDMLLKGAIDALKRLGAEVDNIDVIWVPGAFELPLAVKKLAETGKYDAVIALGCVIRGGTPHFEYV 80 (138)
T ss_pred CEEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEeeEEeCCCchhHHH
Confidence 688888754431 1123456777864 3344322 111 4699999888 443333444
Q ss_pred HhcCChHHHH-HHHHHcCCcEE
Q 030035 55 AEYHNLFPAL-REFVKMGKPVW 75 (184)
Q Consensus 55 ~~~~~l~~~l-~~~~~~g~Pvl 75 (184)
.+. ..+-| +--++.++||.
T Consensus 81 ~~~--v~~gl~~~sl~~~~PV~ 100 (138)
T TIGR00114 81 ADE--AAKGIADLALDYDKPVI 100 (138)
T ss_pred HHH--HHHHHHHHHhhhCCCEE
Confidence 332 23333 33345688873
No 271
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=44.53 E-value=78 Score=27.30 Aligned_cols=35 Identities=31% Similarity=0.536 Sum_probs=25.6
Q ss_pred CCCEEEEcC-CchhHHHHHHhcCChHHHHHHHHHcCCcEEEE
Q 030035 37 NVSSLIIPG-GESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (184)
Q Consensus 37 ~~DglIipG-G~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGI 77 (184)
.++||||-| |.+..-. .+.+.|+++.++|+||.-+
T Consensus 235 ~~~GlVl~~~G~Gn~p~------~~~~~l~~a~~~gipVV~~ 270 (323)
T smart00870 235 GAKGLVLEGTGAGNVPP------DLLEALKEALERGIPVVRT 270 (323)
T ss_pred CCCEEEEEeeCCCCCCH------HHHHHHHHHHHCCCEEEEe
Confidence 589999977 5443321 2577888888899999876
No 272
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=44.34 E-value=1.3e+02 Score=26.80 Aligned_cols=76 Identities=21% Similarity=0.293 Sum_probs=40.9
Q ss_pred CEEEEEecC-C-CHHHHHHHHHHC--CCeEEEEcCC--------------CCCC--CCCEEEE--cCCchhHHHHHHhcC
Q 030035 1 MVVGVLALQ-G-SFNEHIAALKRL--GVKGVEIRKP--------------DQLQ--NVSSLII--PGGESTTMARLAEYH 58 (184)
Q Consensus 1 m~IgVl~~q-G-~~~~~~~~L~~~--G~~v~~v~~~--------------~~l~--~~DglIi--pGG~~~~~~~l~~~~ 58 (184)
.||||+.-. | .+.++.+.+++. ++++.+.... ..++ .+|.||| .||.-.. |..-
T Consensus 136 ~~I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eD---L~~F- 211 (438)
T PRK00286 136 KRIGVITSPTGAAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSLED---LWAF- 211 (438)
T ss_pred CEEEEEeCCccHHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHH---hhcc-
Confidence 379998754 3 356666666664 3566665422 1112 2798888 4453222 3221
Q ss_pred ChHHHHHHHHHcCCcEEEEchHH
Q 030035 59 NLFPALREFVKMGKPVWGTCAGL 81 (184)
Q Consensus 59 ~l~~~l~~~~~~g~PvlGIC~G~ 81 (184)
+-.+..+...+..+||+ .--||
T Consensus 212 n~e~v~~ai~~~~~Pvi-s~IGH 233 (438)
T PRK00286 212 NDEAVARAIAASRIPVI-SAVGH 233 (438)
T ss_pred CcHHHHHHHHcCCCCEE-EeccC
Confidence 11345555566789986 23344
No 273
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.30 E-value=1.1e+02 Score=27.71 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=19.8
Q ss_pred EEEEEecCCCHHHHHHHHHHCCCeEEEEc
Q 030035 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (184)
Q Consensus 2 ~IgVl~~qG~~~~~~~~L~~~G~~v~~v~ 30 (184)
||+|+.+.-.=.+..+.|.+ |+++.+..
T Consensus 8 ~v~v~G~G~sG~a~~~~L~~-g~~v~v~D 35 (454)
T PRK01368 8 KIGVFGLGKTGISVYEELQN-KYDVIVYD 35 (454)
T ss_pred EEEEEeecHHHHHHHHHHhC-CCEEEEEC
Confidence 67887765455566777885 98887775
No 274
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=44.22 E-value=1.5e+02 Score=24.15 Aligned_cols=67 Identities=22% Similarity=0.236 Sum_probs=38.1
Q ss_pred EEEEEecC--CCHHH-----HHHHHHHCCCeEEEEcCCCC----------C--CCCCEEEEcCCchhHHHHHHhcCChHH
Q 030035 2 VVGVLALQ--GSFNE-----HIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFP 62 (184)
Q Consensus 2 ~IgVl~~q--G~~~~-----~~~~L~~~G~~v~~v~~~~~----------l--~~~DglIipGG~~~~~~~l~~~~~l~~ 62 (184)
+|||+.-. ..|.. +.+.+++.|+++.+.....+ + ..+|++|+.+..++. ..+
T Consensus 1 ~I~vi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~---------~~~ 71 (288)
T cd01538 1 KIGLSLPTKTEERWIRDRPNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDGEA---------LAS 71 (288)
T ss_pred CeEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhh---------HHH
Confidence 37776632 22322 34557778999888754211 1 379999997643322 122
Q ss_pred HHHHHHHcCCcEEEE
Q 030035 63 ALREFVKMGKPVWGT 77 (184)
Q Consensus 63 ~l~~~~~~g~PvlGI 77 (184)
.++++.+.++||..+
T Consensus 72 ~l~~l~~~~ipvV~~ 86 (288)
T cd01538 72 AVEKAADAGIPVIAY 86 (288)
T ss_pred HHHHHHHCCCCEEEE
Confidence 344444567887665
No 275
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=43.88 E-value=22 Score=30.71 Aligned_cols=39 Identities=23% Similarity=0.439 Sum_probs=24.7
Q ss_pred CCCCCEEEE-cCCchhHH-HHHHhcCChHHHHHHHHHcCCcEEEEch
Q 030035 35 LQNVSSLII-PGGESTTM-ARLAEYHNLFPALREFVKMGKPVWGTCA 79 (184)
Q Consensus 35 l~~~DglIi-pGG~~~~~-~~l~~~~~l~~~l~~~~~~g~PvlGIC~ 79 (184)
|.++|.||| ||..-+.+ ..| +..-|++++++ .|+.+||-
T Consensus 180 I~~AD~IIlGPgsp~TSI~P~L-----lVpgIreAL~~-a~vV~Vsp 220 (297)
T TIGR01819 180 IRKEDNILIGPSNPITSIGPIL-----SLPGIREALRD-KKVVAVSP 220 (297)
T ss_pred HHhCCEEEECCCccHHHhhhhc-----CchhHHHHHHc-CCEEEEcc
Confidence 467898888 55543332 222 24456666665 89999994
No 276
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=43.79 E-value=29 Score=29.50 Aligned_cols=31 Identities=35% Similarity=0.453 Sum_probs=25.1
Q ss_pred hHHHHHHHHHcCCcEEEEchHHHHHHHhhhc
Q 030035 60 LFPALREFVKMGKPVWGTCAGLIFLANKAVG 90 (184)
Q Consensus 60 l~~~l~~~~~~g~PvlGIC~G~QlLa~~~~~ 90 (184)
+.+.||+.+++++||+|.++|.=|-|+..+.
T Consensus 3 il~~l~~~i~~~~pIig~gaGtGlsAk~ae~ 33 (268)
T PF09370_consen 3 ILDRLRAQIKAGKPIIGAGAGTGLSAKCAEK 33 (268)
T ss_dssp HHHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhCCCceEEEeeccchhhHHHHh
Confidence 4677888889999999999999999998764
No 277
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=43.60 E-value=1.6e+02 Score=25.68 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=45.3
Q ss_pred CEEEEEecCCC------HHHHHHHHHHCCCeEEEEc--CCCC--------CCCCCEEEEcCCchhHHHHHHhcCChHHHH
Q 030035 1 MVVGVLALQGS------FNEHIAALKRLGVKGVEIR--KPDQ--------LQNVSSLIIPGGESTTMARLAEYHNLFPAL 64 (184)
Q Consensus 1 m~IgVl~~qG~------~~~~~~~L~~~G~~v~~v~--~~~~--------l~~~DglIipGG~~~~~~~l~~~~~l~~~l 64 (184)
.+|||+.-.|. ..++.+.++..|.+++... +..+ +.+.|.+++|=.. .... .....+
T Consensus 160 k~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn--~i~s-----~~~~l~ 232 (322)
T COG2984 160 KSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTDN--LIVS-----AIESLL 232 (322)
T ss_pred eeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecch--HHHH-----HHHHHH
Confidence 37999998886 3445566777899998764 2222 2578999988431 1111 123455
Q ss_pred HHHHHcCCcEEEEchH
Q 030035 65 REFVKMGKPVWGTCAG 80 (184)
Q Consensus 65 ~~~~~~g~PvlGIC~G 80 (184)
+...++++|+++==-+
T Consensus 233 ~~a~~~kiPli~sd~~ 248 (322)
T COG2984 233 QVANKAKIPLIASDTS 248 (322)
T ss_pred HHHHHhCCCeecCCHH
Confidence 6666678898754433
No 278
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=43.47 E-value=1.2e+02 Score=24.39 Aligned_cols=48 Identities=15% Similarity=0.242 Sum_probs=28.2
Q ss_pred CEEEEEec-----CC-----CHHHHHHHHHHCCCe---E--EEEcCC-C-------C-CC--CCCEEEEcCCch
Q 030035 1 MVVGVLAL-----QG-----SFNEHIAALKRLGVK---G--VEIRKP-D-------Q-LQ--NVSSLIIPGGES 48 (184)
Q Consensus 1 m~IgVl~~-----qG-----~~~~~~~~L~~~G~~---v--~~v~~~-~-------~-l~--~~DglIipGG~~ 48 (184)
||++||.. .| |-..+.+.|++.|.+ + .++.+. + + ++ ++|.||.+||.+
T Consensus 4 ~~~aIItvSd~~~~G~i~D~ng~~L~~~L~~~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg 77 (193)
T PRK09417 4 LKIGLVSISDRASSGVYEDKGIPALEEWLASALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTG 77 (193)
T ss_pred cEEEEEEEcCcCCCCceeechHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 57888753 33 223355778888643 2 233332 1 1 22 699999999854
No 279
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=43.36 E-value=1e+02 Score=23.10 Aligned_cols=45 Identities=9% Similarity=0.180 Sum_probs=30.8
Q ss_pred EEEEEecCCCHHHH-----HHHHHHCCCeEEEEcC---CCCC------CCCCEEEEcCC
Q 030035 2 VVGVLALQGSFNEH-----IAALKRLGVKGVEIRK---PDQL------QNVSSLIIPGG 46 (184)
Q Consensus 2 ~IgVl~~qG~~~~~-----~~~L~~~G~~v~~v~~---~~~l------~~~DglIipGG 46 (184)
||-+-...|+.+++ ..+|+..|++++..-. ++++ .++|.+.++--
T Consensus 5 ~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~ 63 (137)
T PRK02261 5 TVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSL 63 (137)
T ss_pred EEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCc
Confidence 56555677877663 3568899999998742 2332 37899988763
No 280
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=43.16 E-value=60 Score=29.22 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=23.4
Q ss_pred HHHHHHHCCCeEEEEc---CC-C--------CCCCCCEEEEcCCch
Q 030035 15 HIAALKRLGVKGVEIR---KP-D--------QLQNVSSLIIPGGES 48 (184)
Q Consensus 15 ~~~~L~~~G~~v~~v~---~~-~--------~l~~~DglIipGG~~ 48 (184)
+...|++.|+++.... +. + .++++|.||++||.+
T Consensus 225 L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItTGG~S 270 (419)
T PRK14690 225 LLALARRWGHAPVDLGRVGDDRAALAARLDRAAAEADVILTSGGAS 270 (419)
T ss_pred HHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCccCCEEEEcCCcc
Confidence 4467899999876542 22 1 135799999999854
No 281
>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional
Probab=43.04 E-value=11 Score=29.79 Aligned_cols=50 Identities=12% Similarity=0.028 Sum_probs=28.8
Q ss_pred CCCCEEEEcC-CchhHHHHHHhcCChHHHHHHHHHc-CCcEEEEchHHHHHH
Q 030035 36 QNVSSLIIPG-GESTTMARLAEYHNLFPALREFVKM-GKPVWGTCAGLIFLA 85 (184)
Q Consensus 36 ~~~DglIipG-G~~~~~~~l~~~~~l~~~l~~~~~~-g~PvlGIC~G~QlLa 85 (184)
.+.|.+|+|| ++...-.+|-.-.|+.+..-..... +.+.+|+|.-.|++-
T Consensus 108 ~~iDlviVP~laFD~~G~RLG~GgGyYDR~L~~~~~~~~~~igla~~~Q~~~ 159 (182)
T PRK10333 108 SRLDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQHYKTQPVGYAHDCQLVE 159 (182)
T ss_pred ccCCEEEeCceEECCCCCcccCCcchHHHHHHHhcccCCcEEEEeeeeEEeC
Confidence 3569999999 6543322232223444433222222 345899999999874
No 282
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.97 E-value=1.5e+02 Score=26.24 Aligned_cols=29 Identities=24% Similarity=0.115 Sum_probs=23.3
Q ss_pred EEEEEecCCCHHHHHHHHHHCCCeEEEEc
Q 030035 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (184)
Q Consensus 2 ~IgVl~~qG~~~~~~~~L~~~G~~v~~v~ 30 (184)
||.|+.+-+.=.+..+.|++.|.++....
T Consensus 5 ~i~iiGlG~~G~slA~~l~~~G~~V~g~D 33 (418)
T PRK00683 5 RVVVLGLGVTGKSIARFLAQKGVYVIGVD 33 (418)
T ss_pred eEEEEEECHHHHHHHHHHHHCCCEEEEEe
Confidence 68888887776778899999998776553
No 283
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=42.21 E-value=2e+02 Score=23.92 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=17.9
Q ss_pred CEEEEEecCCCHHH-HHHHHHHC-CCeEE
Q 030035 1 MVVGVLALQGSFNE-HIAALKRL-GVKGV 27 (184)
Q Consensus 1 m~IgVl~~qG~~~~-~~~~L~~~-G~~v~ 27 (184)
|||||+.. |++.. +.+.+.+. +.++.
T Consensus 2 ~rVgIiG~-G~iG~~~~~~l~~~~~~~l~ 29 (265)
T PRK13303 2 MKVAMIGF-GAIGAAVLELLEHDPDLRVD 29 (265)
T ss_pred cEEEEECC-CHHHHHHHHHHhhCCCceEE
Confidence 69999988 88766 55666654 44443
No 284
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=42.12 E-value=86 Score=22.27 Aligned_cols=62 Identities=19% Similarity=0.366 Sum_probs=36.1
Q ss_pred EEEEecCCCHHH-----HHHHHHHCCCeEEEEcC---CCCC------CCCCEEEEcCCchhHHHHHHhcCChHHHHHHH
Q 030035 3 VGVLALQGSFNE-----HIAALKRLGVKGVEIRK---PDQL------QNVSSLIIPGGESTTMARLAEYHNLFPALREF 67 (184)
Q Consensus 3 IgVl~~qG~~~~-----~~~~L~~~G~~v~~v~~---~~~l------~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~ 67 (184)
|-+....|+.++ +...|+..|+++..... ++++ .+.|.+.|+.........+.+ +.+.+|+.
T Consensus 2 vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~---~i~~l~~~ 77 (119)
T cd02067 2 VVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKE---VIEELKEA 77 (119)
T ss_pred EEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHH---HHHHHHHc
Confidence 444455676665 34678889999977532 1222 378999998763333333322 45556554
No 285
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=41.91 E-value=53 Score=24.41 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHH-CC--CeEEEE-c---CCCCCCCCCEEEEcCC
Q 030035 9 QGSFNEHIAALKR-LG--VKGVEI-R---KPDQLQNVSSLIIPGG 46 (184)
Q Consensus 9 qG~~~~~~~~L~~-~G--~~v~~v-~---~~~~l~~~DglIipGG 46 (184)
.|+-..+++.+.+ ++ +..+.+ . ...++.++|.||+.++
T Consensus 8 ~G~Tk~~A~~ia~~l~~~~~~v~~~~~~~~~~~~~~yD~vi~gsp 52 (143)
T PF12724_consen 8 TGNTKKIAEWIAEKLGEEGELVDLEKVEEDEPDLSDYDAVIFGSP 52 (143)
T ss_pred CchHHHHHHHHHHHHhhhccEEEHHhhhhcccccccCCEEEEEEE
Confidence 5665555555433 33 223322 2 2346789999999775
No 286
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=41.55 E-value=76 Score=25.31 Aligned_cols=61 Identities=20% Similarity=0.510 Sum_probs=32.2
Q ss_pred EEEEEecCCCH----HHHHHHHHHCCCeEEEEcCCCCCCCCCEEEE----cCCchhHHHHHHhcCChHHHHHHHHHcCCc
Q 030035 2 VVGVLALQGSF----NEHIAALKRLGVKGVEIRKPDQLQNVSSLII----PGGESTTMARLAEYHNLFPALREFVKMGKP 73 (184)
Q Consensus 2 ~IgVl~~qG~~----~~~~~~L~~~G~~v~~v~~~~~l~~~DglIi----pGG~~~~~~~l~~~~~l~~~l~~~~~~g~P 73 (184)
+|+|+-+.|.+ .++.+.|+++.- + ++..+|+| |||....... +.+.|+++- +++|
T Consensus 1 ~v~vi~i~g~i~~s~~~l~~~l~~a~~---------d-~~i~~vvl~~~s~Gg~~~~~~~------l~~~i~~~~-~~kp 63 (207)
T TIGR00706 1 TIAILPVSGAIAVSPEDFDKKIKRIKD---------D-KSIKALLLRINSPGGTVVASEE------IYEKLKKLK-AKKP 63 (207)
T ss_pred CEEEEEEEEEEecCHHHHHHHHHHHhh---------C-CCccEEEEEecCCCCCHHHHHH------HHHHHHHhc-CCCC
Confidence 46777766644 555666665421 0 23445554 4554333222 445565553 5899
Q ss_pred EEEEch
Q 030035 74 VWGTCA 79 (184)
Q Consensus 74 vlGIC~ 79 (184)
|++.+-
T Consensus 64 via~v~ 69 (207)
T TIGR00706 64 VVASMG 69 (207)
T ss_pred EEEEEC
Confidence 996553
No 287
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=41.10 E-value=66 Score=27.23 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=29.0
Q ss_pred CEEEEEecCCCHHH--HHHHHHHCCCeEEEEcCC---------------C-CCCCCCEEEEc
Q 030035 1 MVVGVLALQGSFNE--HIAALKRLGVKGVEIRKP---------------D-QLQNVSSLIIP 44 (184)
Q Consensus 1 m~IgVl~~qG~~~~--~~~~L~~~G~~v~~v~~~---------------~-~l~~~DglIip 44 (184)
++|+|+ .|+-.. +.+.|.+.|+++..+-.+ + .+.++|.+|+|
T Consensus 2 ~~~~v~--ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p 61 (287)
T TIGR02853 2 IHIAVI--GGDARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILP 61 (287)
T ss_pred cEEEEE--cccHHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEEC
Confidence 456665 477666 568899999998776321 1 15789999994
No 288
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=40.57 E-value=1.8e+02 Score=22.77 Aligned_cols=73 Identities=12% Similarity=0.151 Sum_probs=38.6
Q ss_pred CEEEEEecCCCH--HH-----HHHHHHHCCC---eEEEEcCC---------CC---CCCCCEEEEcC----CchhHHHHH
Q 030035 1 MVVGVLALQGSF--NE-----HIAALKRLGV---KGVEIRKP---------DQ---LQNVSSLIIPG----GESTTMARL 54 (184)
Q Consensus 1 m~IgVl~~qG~~--~~-----~~~~L~~~G~---~v~~v~~~---------~~---l~~~DglIipG----G~~~~~~~l 54 (184)
.||+|+.-+-|- .+ -.+.|++.|+ ++.+++-| +. -.+||++|.-| |+..-++.+
T Consensus 11 ~riaIV~srfn~~It~~Ll~gA~~~l~~~G~~~~~i~v~~VPGA~EiP~~a~~l~~~~~yDaiIaLG~VIrGeT~H~e~V 90 (158)
T PRK12419 11 QRIAFIQARWHADIVDQARKGFVAEIAARGGAASQVDIFDVPGAFEIPLHAQTLAKTGRYAAIVAAALVVDGGIYRHEFV 90 (158)
T ss_pred CEEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEEEEEcCCCchhHHH
Confidence 378887754431 11 2345777884 24444322 11 14699999988 443334444
Q ss_pred HhcCChHHHH-HHHHHcCCcEE
Q 030035 55 AEYHNLFPAL-REFVKMGKPVW 75 (184)
Q Consensus 55 ~~~~~l~~~l-~~~~~~g~Pvl 75 (184)
.+. ..+-| +-.++.++||.
T Consensus 91 ~~~--v~~gl~~vsl~~~~PV~ 110 (158)
T PRK12419 91 AQA--VIDGLMRVQLDTEVPVF 110 (158)
T ss_pred HHH--HHHHHHHHHhccCCCEE
Confidence 432 23323 33345689973
No 289
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=40.54 E-value=1.3e+02 Score=26.46 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=19.5
Q ss_pred CEEEEEecCCCHHH-HHHHHHHCCC
Q 030035 1 MVVGVLALQGSFNE-HIAALKRLGV 24 (184)
Q Consensus 1 m~IgVl~~qG~~~~-~~~~L~~~G~ 24 (184)
|||||+.-.|.+.+ +++.|++...
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f 26 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHF 26 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCC
Confidence 58999999999987 5688888544
No 290
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=40.48 E-value=34 Score=25.52 Aligned_cols=43 Identities=21% Similarity=0.379 Sum_probs=28.7
Q ss_pred CEEEEEecCCCHHH-HHHHHHHCCCeEEEEcCC---------------------CCCCCCCEEEEc
Q 030035 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKP---------------------DQLQNVSSLIIP 44 (184)
Q Consensus 1 m~IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~---------------------~~l~~~DglIip 44 (184)
|||+|+.- |++.. +.++|++.|..+.-+... +.++++|.++|.
T Consensus 11 l~I~iIGa-GrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~ia 75 (127)
T PF10727_consen 11 LKIGIIGA-GRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIA 75 (127)
T ss_dssp -EEEEECT-SCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-
T ss_pred cEEEEECC-CHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEE
Confidence 68998764 77765 448899999988766321 124678999985
No 291
>PRK05665 amidotransferase; Provisional
Probab=40.40 E-value=23 Score=29.33 Aligned_cols=38 Identities=8% Similarity=0.162 Sum_probs=32.9
Q ss_pred ceEEecCCCcEEEEecCCCCcccccCCccccccccccc
Q 030035 145 PAVLDVGPDVDVLADYPVPSNKVLYSSSTVEIQEVCLM 182 (184)
Q Consensus 145 p~i~~~~~~v~vLa~~~~~~~~~~~~~~~~~~~~~~~~ 182 (184)
|+....++...++..+.+.+..+|.++...++|+.|..
T Consensus 133 ~~~~~~~~~~~~~~~H~D~V~~LP~ga~~La~s~~~~~ 170 (240)
T PRK05665 133 PWMSPAVTELTLLISHQDQVTALPEGATVIASSDFCPF 170 (240)
T ss_pred ccccCCCCceEEEEEcCCeeeeCCCCcEEEEeCCCCcE
Confidence 45555678899999999999999999999999999964
No 292
>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism.
Probab=40.13 E-value=15 Score=28.76 Aligned_cols=51 Identities=16% Similarity=0.185 Sum_probs=30.4
Q ss_pred CCCCEEEEcC-CchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHH
Q 030035 36 QNVSSLIIPG-GESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLAN 86 (184)
Q Consensus 36 ~~~DglIipG-G~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~ 86 (184)
.+.|.+|+|| +++..-.+|-.-.|+.+...+......+.+|+|.-.|++.+
T Consensus 114 ~~idlvivP~lafD~~G~RLG~GgGyYDR~L~~~~~~~~~igv~~~~q~~~~ 165 (181)
T TIGR02727 114 DEIDLIIVPGVAFDRRGYRLGYGGGYYDRFLANLKGKTVVVGLAFDFQLVDE 165 (181)
T ss_pred ccCCEEEeCceEEcCCCccccCCcchHHHHHHhcccCCCEEEEEecceeeCc
Confidence 3569999999 66443223333234555433333333458999999888754
No 293
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=39.88 E-value=1.3e+02 Score=23.08 Aligned_cols=38 Identities=24% Similarity=0.367 Sum_probs=24.1
Q ss_pred CHHHHHHHHH----HCCCeEEEEcCCC----------CCCCCCEEEE-cCCch
Q 030035 11 SFNEHIAALK----RLGVKGVEIRKPD----------QLQNVSSLII-PGGES 48 (184)
Q Consensus 11 ~~~~~~~~L~----~~G~~v~~v~~~~----------~l~~~DglIi-pGG~~ 48 (184)
++.++.+.++ +.|+++....+.. ..+++|++|| ||++.
T Consensus 25 tl~~i~~~l~~~a~~~g~~v~~~QSN~Egelid~I~~a~~~~dgiIINpga~T 77 (140)
T cd00466 25 TLADIEALLRELAAELGVEVEFFQSNHEGELIDWIHEARDGADGIIINPGAYT 77 (140)
T ss_pred CHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhhccCcEEEEcchHHH
Confidence 3555555544 4688888875431 1246899999 87764
No 294
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=39.88 E-value=1.2e+02 Score=22.53 Aligned_cols=62 Identities=13% Similarity=0.103 Sum_probs=35.4
Q ss_pred EEEEEecCCCHHH-----HHHHHHHCCCeEEEEc---CCCCC------CCCCEEEEcCCchhHHHHHHhcCChHHHHHH
Q 030035 2 VVGVLALQGSFNE-----HIAALKRLGVKGVEIR---KPDQL------QNVSSLIIPGGESTTMARLAEYHNLFPALRE 66 (184)
Q Consensus 2 ~IgVl~~qG~~~~-----~~~~L~~~G~~v~~v~---~~~~l------~~~DglIipGG~~~~~~~l~~~~~l~~~l~~ 66 (184)
||-+-...|+.++ ....|+..|++++... +++++ .++|.+.|++-..+.++.... +.+.|++
T Consensus 4 ~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~---~~~~L~~ 79 (132)
T TIGR00640 4 RILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPA---LRKELDK 79 (132)
T ss_pred EEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHH---HHHHHHh
Confidence 4444444555544 2356888999998763 22221 478999998854444433322 4455554
No 295
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=39.72 E-value=1.7e+02 Score=24.89 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=21.2
Q ss_pred CEEEEEecCCC--------HHHHHHHHHHCCCeEEEEc
Q 030035 1 MVVGVLALQGS--------FNEHIAALKRLGVKGVEIR 30 (184)
Q Consensus 1 m~IgVl~~qG~--------~~~~~~~L~~~G~~v~~v~ 30 (184)
.+|+|++-.+. +..-++.|+..|.++++-+
T Consensus 1 d~I~ivAPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~ 38 (308)
T cd07062 1 DTIAVVSPSSGIPGELPHRLERAKKRLENLGFEVVEGP 38 (308)
T ss_pred CeEEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEEec
Confidence 47999987653 3334567888999988754
No 296
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=39.50 E-value=57 Score=26.77 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=38.9
Q ss_pred HHHHHHHHCCCeEEEEc----------CCCCCCCCCEEEEcC-Cchh------HHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035 14 EHIAALKRLGVKGVEIR----------KPDQLQNVSSLIIPG-GEST------TMARLAEYHNLFPALREFVKMGKPVW 75 (184)
Q Consensus 14 ~~~~~L~~~G~~v~~v~----------~~~~l~~~DglIipG-G~~~------~~~~l~~~~~l~~~l~~~~~~g~Pvl 75 (184)
.+.++|+.-++++.+.. +.+.|+.||+|||+- |..+ +.-...-.....+.|+++++.|.-.|
T Consensus 36 ~Ll~~Lr~g~~dv~yMpAH~~q~~FPqtme~L~~YDaivlSDiGsNt~LL~~~t~~~~k~~Pn~L~likdyV~~GGGLL 114 (254)
T COG5426 36 PLLKALRGGEYDVTYMPAHDAQEKFPQTMEGLDAYDAIVLSDIGSNTLLLQPATWYHSKIVPNRLKLIKDYVENGGGLL 114 (254)
T ss_pred HHHHHHhCCCcceEEechHHHHHhcchhhhhhcccceEEEeecCCceeeccccceeecccCccHHHHHHHHHhcCCcEE
Confidence 35678888888887653 124578899999976 5322 11111111235788999998875444
No 297
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=39.13 E-value=94 Score=26.22 Aligned_cols=56 Identities=21% Similarity=0.253 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHCCCeEEEEcCCCC----CCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEch
Q 030035 9 QGSFNEHIAALKRLGVKGVEIRKPDQ----LQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (184)
Q Consensus 9 qG~~~~~~~~L~~~G~~v~~v~~~~~----l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~ 79 (184)
.|...+..+.++ .+.++.+....++ +..+|.+|.++|.. .+-+++..|+|++.++.
T Consensus 221 ~g~~~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~d~~i~~~g~~--------------~~~Ea~~~g~Pvv~~~~ 280 (357)
T PRK00726 221 KGDLEEVRAAYA-AGINAEVVPFIDDMAAAYAAADLVICRAGAS--------------TVAELAAAGLPAILVPL 280 (357)
T ss_pred CCcHHHHHHHhh-cCCcEEEeehHhhHHHHHHhCCEEEECCCHH--------------HHHHHHHhCCCEEEecC
Confidence 334444444444 5544333321122 34667766665521 23355567999999985
No 298
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=38.42 E-value=1.7e+02 Score=23.00 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=19.5
Q ss_pred HHHHHHCCCeEEEEcCCCC----------C--CCCCEEEEcC
Q 030035 16 IAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPG 45 (184)
Q Consensus 16 ~~~L~~~G~~v~~v~~~~~----------l--~~~DglIipG 45 (184)
.+.+++.|+.+.+.....+ + .++||+|+.+
T Consensus 22 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~ 63 (268)
T cd06323 22 QKEAKELGYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINP 63 (268)
T ss_pred HHHHHHcCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 3567778988877643211 1 3689999954
No 299
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=38.30 E-value=90 Score=29.35 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=22.5
Q ss_pred CCCEEEE----cCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEch
Q 030035 37 NVSSLII----PGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (184)
Q Consensus 37 ~~DglIi----pGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~ 79 (184)
+..+|+| |||.....+. +.+.|+++.+.+|||..-+.
T Consensus 346 ~VkaIVLrinSpGGs~~ase~------i~~~i~~~~~~gKPVva~~~ 386 (584)
T TIGR00705 346 DIKAVVLRINSPGGSVFASEI------IRRELARAQARGKPVIVSMG 386 (584)
T ss_pred CceEEEEEecCCCCCHHHHHH------HHHHHHHHHhCCCcEEEEEC
Confidence 5667877 7775443222 33456666567899986543
No 300
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=38.14 E-value=41 Score=29.06 Aligned_cols=71 Identities=11% Similarity=0.110 Sum_probs=40.3
Q ss_pred HHHHHHHHHHCCCeEEEEcCCCC---CCCCCEEEEcC-CchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHH
Q 030035 12 FNEHIAALKRLGVKGVEIRKPDQ---LQNVSSLIIPG-GESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIF 83 (184)
Q Consensus 12 ~~~~~~~L~~~G~~v~~v~~~~~---l~~~DglIipG-G~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~Ql 83 (184)
-....+.|++.|+++.++.+... ++++|.+++.. +--.. ..+.++-|-.....-+.+.++|++..|--+=+
T Consensus 159 G~~~ak~L~~~gI~~~~I~Dsa~~~~~~~vd~VivGad~I~~n-G~lvnkiGT~~lA~~A~e~~~Pf~v~aesyKf 233 (301)
T COG1184 159 GRIMAKELRQSGIPVTVIVDSAVGAFMSRVDKVLVGADAILAN-GALVNKIGTSPLALAARELRVPFYVVAESYKF 233 (301)
T ss_pred HHHHHHHHHHcCCceEEEechHHHHHHHhCCEEEECccceecC-CcEEeccchHHHHHHHHHhCCCEEEEeeeecc
Confidence 34466889999999988865432 35677776654 21000 01111123333333444679999988765543
No 301
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=38.03 E-value=2e+02 Score=24.46 Aligned_cols=83 Identities=17% Similarity=0.156 Sum_probs=47.4
Q ss_pred CEEEEEecCC--CHHHHHHHHHH--CCCeEEEE-cCCCCC------CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHH
Q 030035 1 MVVGVLALQG--SFNEHIAALKR--LGVKGVEI-RKPDQL------QNVSSLIIPGGESTTMARLAEYHNLFPALREFVK 69 (184)
Q Consensus 1 m~IgVl~~qG--~~~~~~~~L~~--~G~~v~~v-~~~~~l------~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~ 69 (184)
|||+||+-.. |+..++++.+. .++++..+ .+..++ .+.....++-...+ + ......+.+.++
T Consensus 90 ~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~~~~~---~----~~~~~~~~~~l~ 162 (286)
T PRK06027 90 KRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHDDLRSLVERFGIPFHHVPVTKET---K----AEAEARLLELID 162 (286)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEeccCccc---c----chhHHHHHHHHH
Confidence 6899988643 77878877766 45676654 333332 13445555432110 0 011222333334
Q ss_pred cCCcEEEEchH-HHHHHHhhhc
Q 030035 70 MGKPVWGTCAG-LIFLANKAVG 90 (184)
Q Consensus 70 ~g~PvlGIC~G-~QlLa~~~~~ 90 (184)
+-.|=+.+|+| |++|...+..
T Consensus 163 ~~~~Dlivlagy~~il~~~~l~ 184 (286)
T PRK06027 163 EYQPDLVVLARYMQILSPDFVA 184 (286)
T ss_pred HhCCCEEEEecchhhcCHHHHh
Confidence 45688999999 6888877754
No 302
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.84 E-value=1.8e+02 Score=22.97 Aligned_cols=52 Identities=29% Similarity=0.364 Sum_probs=30.3
Q ss_pred HHHHHCCCeEEEEcCCCC----------C--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEE
Q 030035 17 AALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (184)
Q Consensus 17 ~~L~~~G~~v~~v~~~~~----------l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGI 77 (184)
+.+++.|+++.+.....+ + ...|++|+.+...+. ..+.++.+.+.++|+..+
T Consensus 24 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~---------~~~~l~~~~~~~iPvV~~ 87 (275)
T cd06317 24 AAAEEDGVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPTDGQA---------YIPGLRKAKQAGIPVVIT 87 (275)
T ss_pred HHHHhcCCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCCccc---------cHHHHHHHHHCCCcEEEe
Confidence 446678999887753211 1 378999997653321 122344444567787654
No 303
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=37.76 E-value=69 Score=25.38 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=33.4
Q ss_pred CEEEEEecCCCHHHHHHHHHHCCCeEEEEc------C-C-------CCCCCCCEEEEcCCch
Q 030035 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIR------K-P-------DQLQNVSSLIIPGGES 48 (184)
Q Consensus 1 m~IgVl~~qG~~~~~~~~L~~~G~~v~~v~------~-~-------~~l~~~DglIipGG~~ 48 (184)
|||.+..-...-..+.+.|++.|+++..+. . . ..+..+|.||++-..+
T Consensus 2 ~~ilitr~~~~~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~~~~~~~~~~~d~iiftS~~a 63 (249)
T PRK05928 2 MKILVTRPSPKAEELVELLRELGFVALHFPLIEIEPGRQLPQLAAQLAALGADWVIFTSKNA 63 (249)
T ss_pred CEEEEeCCHHHHHHHHHHHHHcCCCEEEeccEEEecCCCcChHHHHhhCCCCCEEEEECHHH
Confidence 567666555556678899999999887652 1 1 2356899999987543
No 304
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.69 E-value=2.1e+02 Score=22.79 Aligned_cols=54 Identities=22% Similarity=0.217 Sum_probs=31.8
Q ss_pred HHHHHHCCCeEEEEcCCC-C----------C--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEc
Q 030035 16 IAALKRLGVKGVEIRKPD-Q----------L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (184)
Q Consensus 16 ~~~L~~~G~~v~~v~~~~-~----------l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC 78 (184)
.+++++.|.++.+..... + + .++|++|+.+...+. ..+.++.+.+.|+|++-+-
T Consensus 23 ~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~---------~~~~l~~~~~~~ipvV~~~ 89 (271)
T cd06312 23 EDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPDPDA---------LDPAIKRAVAAGIPVISFN 89 (271)
T ss_pred HHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHH---------hHHHHHHHHHCCCeEEEeC
Confidence 355666899888775332 2 1 368999997643221 1223444445678887764
No 305
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=37.61 E-value=1.7e+02 Score=23.02 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=21.3
Q ss_pred HHHHHHHCCCeEEEEcCCCC----------C--CCCCEEEEcCC
Q 030035 15 HIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGG 46 (184)
Q Consensus 15 ~~~~L~~~G~~v~~v~~~~~----------l--~~~DglIipGG 46 (184)
+.+++++.|+++.++....+ + ..+||+|+.+.
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 64 (265)
T cd06299 21 IQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPH 64 (265)
T ss_pred HHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 34567778998888753211 1 36899999764
No 306
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=37.51 E-value=1.6e+02 Score=26.93 Aligned_cols=83 Identities=17% Similarity=0.226 Sum_probs=49.7
Q ss_pred EEEEEecCC-----CHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCCchh--HH-----HHHHhcCChHHHHHHHHH
Q 030035 2 VVGVLALQG-----SFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGGEST--TM-----ARLAEYHNLFPALREFVK 69 (184)
Q Consensus 2 ~IgVl~~qG-----~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG~~~--~~-----~~l~~~~~l~~~l~~~~~ 69 (184)
+|+|+.+.+ +|....+.+++.|++.++.. +.+|+--|+-+.-||..- .+ ..+..+.+..+.+.+++.
T Consensus 187 ~IAIvDf~~~~~~~Ef~~f~~~f~~~G~~~vI~d-~~~L~y~~g~L~~~~~~ID~VyRR~Vt~e~l~~~d~~~~li~Ay~ 265 (445)
T PF14403_consen 187 NIAIVDFLEYPTLSEFEVFQRLFEEHGYDCVICD-PRDLEYRDGRLYAGGRPIDAVYRRFVTSELLERYDEVQPLIQAYR 265 (445)
T ss_pred cEEEEecccCCccchHHHHHHHHHHcCCceEecC-hHHceecCCEEEECCEeeehhhHhhhhHHhhhccccchHHHHHHh
Confidence 588888765 45667788999999988874 456665566666677421 12 234444433444445554
Q ss_pred cC-CcEEEEchHHHHHHH
Q 030035 70 MG-KPVWGTCAGLIFLAN 86 (184)
Q Consensus 70 ~g-~PvlGIC~G~QlLa~ 86 (184)
.| .+++|==++ |++.+
T Consensus 266 ~~av~~vgsfrs-~l~hn 282 (445)
T PF14403_consen 266 DGAVCMVGSFRS-QLLHN 282 (445)
T ss_pred cCCeEEecchhh-hhhhh
Confidence 44 566554444 55554
No 307
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=37.51 E-value=69 Score=27.07 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=19.9
Q ss_pred CEEEEEe-cCCCHHHHHHHHHHCCC
Q 030035 1 MVVGVLA-LQGSFNEHIAALKRLGV 24 (184)
Q Consensus 1 m~IgVl~-~qG~~~~~~~~L~~~G~ 24 (184)
|++.|++ ++|++..+.+.|++.+.
T Consensus 1 M~~~vIGDIHG~~~~l~~ll~~~~~ 25 (275)
T PRK00166 1 MATYAIGDIQGCYDELQRLLEKIDF 25 (275)
T ss_pred CcEEEEEccCCCHHHHHHHHHhcCC
Confidence 7877775 79999999999998753
No 308
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=37.04 E-value=2.6e+02 Score=23.94 Aligned_cols=67 Identities=22% Similarity=0.258 Sum_probs=37.3
Q ss_pred EEEEEecC-C-CHHH-----HHHHHHHCCCeEEEEcCC-----------CCC--CCCCEEEEcCCchhHHHHHHhcCChH
Q 030035 2 VVGVLALQ-G-SFNE-----HIAALKRLGVKGVEIRKP-----------DQL--QNVSSLIIPGGESTTMARLAEYHNLF 61 (184)
Q Consensus 2 ~IgVl~~q-G-~~~~-----~~~~L~~~G~~v~~v~~~-----------~~l--~~~DglIipGG~~~~~~~l~~~~~l~ 61 (184)
||+++.-. + .|.. ..++.++.|+++.+.... +++ .++|+|++..-.++. +.
T Consensus 25 ~i~~v~k~~~~pf~~~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d~~a---------l~ 95 (336)
T PRK15408 25 RIAFIPKLVGVGFFTSGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDG---------LC 95 (336)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHH---------HH
Confidence 67776532 2 2222 335567789998864311 111 479999996432222 23
Q ss_pred HHHHHHHHcCCcEEEE
Q 030035 62 PALREFVKMGKPVWGT 77 (184)
Q Consensus 62 ~~l~~~~~~g~PvlGI 77 (184)
..++++.+.|+|+.-+
T Consensus 96 ~~l~~a~~~gIpVV~~ 111 (336)
T PRK15408 96 PALKRAMQRGVKVLTW 111 (336)
T ss_pred HHHHHHHHCCCeEEEe
Confidence 4555666667776544
No 309
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=37.04 E-value=2.1e+02 Score=22.72 Aligned_cols=30 Identities=30% Similarity=0.253 Sum_probs=19.8
Q ss_pred HHHHHCCCeEEEEc-CCCC----------C--CCCCEEEEcCC
Q 030035 17 AALKRLGVKGVEIR-KPDQ----------L--QNVSSLIIPGG 46 (184)
Q Consensus 17 ~~L~~~G~~v~~v~-~~~~----------l--~~~DglIipGG 46 (184)
+.+++.|+.+.+.. ...+ + .++||+|+...
T Consensus 22 ~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 64 (271)
T cd06314 22 AAGKELGVDVEFVVPQQGTVNAQLRMLEDLIAEGVDGIAISPI 64 (271)
T ss_pred HHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 45677899988763 2211 1 37899999754
No 310
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=36.73 E-value=1.8e+02 Score=25.58 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=17.8
Q ss_pred EEEEEecCCCHHHHHHHHHHCCCeEEEE
Q 030035 2 VVGVLALQGSFNEHIAALKRLGVKGVEI 29 (184)
Q Consensus 2 ~IgVl~~qG~~~~~~~~L~~~G~~v~~v 29 (184)
||.|+.+.|.=....+.|.+.|.+|...
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~s 28 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVT 28 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEE
Confidence 3566666665456777777777766544
No 311
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=36.60 E-value=84 Score=26.53 Aligned_cols=44 Identities=9% Similarity=0.117 Sum_probs=31.9
Q ss_pred CEEEEEecCCCHHH-HHHHHHHCCCeEEEEcCC--CC----CCCCCEEEEcC
Q 030035 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIRKP--DQ----LQNVSSLIIPG 45 (184)
Q Consensus 1 m~IgVl~~qG~~~~-~~~~L~~~G~~v~~v~~~--~~----l~~~DglIipG 45 (184)
|||+|+.. |+... +...|.+.|.++.++... .+ ++++|.+|+.=
T Consensus 5 m~I~iiG~-G~~G~~lA~~l~~~G~~V~~~~r~~~~~~~~~~~~advvi~~v 55 (308)
T PRK14619 5 KTIAILGA-GAWGSTLAGLASANGHRVRVWSRRSGLSLAAVLADADVIVSAV 55 (308)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHhcCCEEEEEC
Confidence 79999864 88877 457889999998877422 12 35789888854
No 312
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=36.57 E-value=2.4e+02 Score=23.11 Aligned_cols=46 Identities=20% Similarity=0.339 Sum_probs=26.3
Q ss_pred EEEEEecC-CC-HH-H----HHHHHHHCCCeEEEE-cCCC----------CC--CCCCEEEEcCCc
Q 030035 2 VVGVLALQ-GS-FN-E----HIAALKRLGVKGVEI-RKPD----------QL--QNVSSLIIPGGE 47 (184)
Q Consensus 2 ~IgVl~~q-G~-~~-~----~~~~L~~~G~~v~~v-~~~~----------~l--~~~DglIipGG~ 47 (184)
||||+.-. .+ |. . +.+.+++.|+++.++ .... .+ ..+|++|+.+..
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~~g~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~~ 66 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAKELGVDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVPND 66 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 57776632 22 22 2 234566789998875 2211 11 368999997643
No 313
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=36.17 E-value=2.3e+02 Score=23.44 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=21.7
Q ss_pred HHHHHHHCCCeEEEEcCCCC-------C-----CCCCEEEEcCC
Q 030035 15 HIAALKRLGVKGVEIRKPDQ-------L-----QNVSSLIIPGG 46 (184)
Q Consensus 15 ~~~~L~~~G~~v~~v~~~~~-------l-----~~~DglIipGG 46 (184)
+.+.+++.|+++.+.....+ + ..+|+||+.+.
T Consensus 20 i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~ 63 (302)
T TIGR02634 20 FVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQ 63 (302)
T ss_pred HHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 45667888999887643211 1 46899999764
No 314
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=35.79 E-value=2.3e+02 Score=22.81 Aligned_cols=47 Identities=13% Similarity=0.032 Sum_probs=27.9
Q ss_pred CEEEEEecC--CCHH-HH----HHHHHHCCCeEEEEcCCCC-------C-----CCCCEEEEcCCc
Q 030035 1 MVVGVLALQ--GSFN-EH----IAALKRLGVKGVEIRKPDQ-------L-----QNVSSLIIPGGE 47 (184)
Q Consensus 1 m~IgVl~~q--G~~~-~~----~~~L~~~G~~v~~v~~~~~-------l-----~~~DglIipGG~ 47 (184)
.+||++.-. ..|. ++ .+.+++.|..+.+.....+ + .++||+|+.+..
T Consensus 1 ~~ig~i~~~~~~~~~~~~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~~ 66 (280)
T cd06315 1 KNIIFVASDLKNGGILGVGEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGVD 66 (280)
T ss_pred CeEEEEecccCCcHHHHHHHHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 368876532 2222 23 3556778988877643211 1 478999998643
No 315
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=35.65 E-value=1.7e+02 Score=21.12 Aligned_cols=62 Identities=18% Similarity=0.208 Sum_probs=37.4
Q ss_pred EEEEEecCCCHHHH-----HHHHHHCCCeEEEEcC---CCCC------CCCCEEEEcCCchhHHHHHHhcCChHHHHHH
Q 030035 2 VVGVLALQGSFNEH-----IAALKRLGVKGVEIRK---PDQL------QNVSSLIIPGGESTTMARLAEYHNLFPALRE 66 (184)
Q Consensus 2 ~IgVl~~qG~~~~~-----~~~L~~~G~~v~~v~~---~~~l------~~~DglIipGG~~~~~~~l~~~~~l~~~l~~ 66 (184)
||-+....|+.++. ...|+..|++++..-. ++++ .++|.+.|++...+....+.+ +.+.|++
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~---~~~~L~~ 76 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPE---VIELLRE 76 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccchhhHHHHHH---HHHHHHh
Confidence 34445567777663 3568889999988742 2222 378999999865443333322 4444554
No 316
>PRK10342 glycerate kinase I; Provisional
Probab=35.62 E-value=26 Score=31.27 Aligned_cols=43 Identities=23% Similarity=0.463 Sum_probs=26.6
Q ss_pred CCCCCCCEEEEcC-Cc---hhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHH
Q 030035 33 DQLQNVSSLIIPG-GE---STTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (184)
Q Consensus 33 ~~l~~~DglIipG-G~---~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~ 81 (184)
+.++++| |||+| |. .+.+.+.. ....+.+.+.++|++.+|.-.
T Consensus 280 ~~l~~AD-LVITGEG~~D~QTl~GK~p-----~gVa~~A~~~~vPviai~G~~ 326 (381)
T PRK10342 280 EHIHDCT-LVITGEGRIDSQSIHGKVP-----IGVANVAKKYHKPVIGIAGSL 326 (381)
T ss_pred HHhccCC-EEEECCCcCcccccCCccH-----HHHHHHHHHhCCCEEEEeccc
Confidence 3467888 67887 73 22233322 334445556799999999864
No 317
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=35.55 E-value=41 Score=29.06 Aligned_cols=40 Identities=25% Similarity=0.492 Sum_probs=23.6
Q ss_pred CCCCCEEEE-cCCchhHH-HHHHhcCChHHHHHHHHH-cCCcEEEEch
Q 030035 35 LQNVSSLII-PGGESTTM-ARLAEYHNLFPALREFVK-MGKPVWGTCA 79 (184)
Q Consensus 35 l~~~DglIi-pGG~~~~~-~~l~~~~~l~~~l~~~~~-~g~PvlGIC~ 79 (184)
+.++|.||| ||..-+.+ ..| +..-|+++++ ...|+.+||-
T Consensus 181 I~~AD~IVlGPgsp~TSI~P~L-----lVpgI~eAL~~s~A~vV~Vsp 223 (303)
T cd07186 181 IEDADLVIIGPSNPVTSIGPIL-----ALPGIREALRDKKAPVVAVSP 223 (303)
T ss_pred HHhCCEEEECCCccHHHhhhhc-----cchhHHHHHHhCCCCEEEEcC
Confidence 467899888 65543332 222 2334555443 4569999993
No 318
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=35.52 E-value=1.4e+02 Score=21.69 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=21.9
Q ss_pred CEEEEEecCCCHHH-HHHHHHH-CCCeEEEE
Q 030035 1 MVVGVLALQGSFNE-HIAALKR-LGVKGVEI 29 (184)
Q Consensus 1 m~IgVl~~qG~~~~-~~~~L~~-~G~~v~~v 29 (184)
|||+|....|.... +.+.+.+ .+.++.-+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~ 31 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGA 31 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEE
Confidence 79999998898877 5566666 67776544
No 319
>PRK09701 D-allose transporter subunit; Provisional
Probab=35.37 E-value=2.6e+02 Score=23.18 Aligned_cols=67 Identities=16% Similarity=0.099 Sum_probs=36.0
Q ss_pred EEEEEec--CCCH-HHH----HHHHHHCCCeEEEEc--CCCC----------C--CCCCEEEEcCCchhHHHHHHhcCCh
Q 030035 2 VVGVLAL--QGSF-NEH----IAALKRLGVKGVEIR--KPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNL 60 (184)
Q Consensus 2 ~IgVl~~--qG~~-~~~----~~~L~~~G~~v~~v~--~~~~----------l--~~~DglIipGG~~~~~~~l~~~~~l 60 (184)
+|||+.- +..| .++ .+.+++.|.++.+.. ...+ + .++|++||.+......
T Consensus 26 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~--------- 96 (311)
T PRK09701 26 EYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNL--------- 96 (311)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHH---------
Confidence 5788763 2222 223 355667899887762 1111 1 3689999976543221
Q ss_pred HHHHHHHHHcCCcEEEE
Q 030035 61 FPALREFVKMGKPVWGT 77 (184)
Q Consensus 61 ~~~l~~~~~~g~PvlGI 77 (184)
.+.+.++.+.|+|+..+
T Consensus 97 ~~~l~~~~~~giPvV~~ 113 (311)
T PRK09701 97 VMPVARAWKKGIYLVNL 113 (311)
T ss_pred HHHHHHHHHCCCcEEEe
Confidence 11233444567777644
No 320
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=35.29 E-value=2.5e+02 Score=22.89 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=21.1
Q ss_pred HHHHHHHCCCeEEEEcCCC----------CC--CCCCEEEEcCCc
Q 030035 15 HIAALKRLGVKGVEIRKPD----------QL--QNVSSLIIPGGE 47 (184)
Q Consensus 15 ~~~~L~~~G~~v~~v~~~~----------~l--~~~DglIipGG~ 47 (184)
+.+.+++.|+++.+..... .+ .++|++|+.+..
T Consensus 48 i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~ 92 (295)
T PRK10653 48 AQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTD 92 (295)
T ss_pred HHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 3356777899988764321 11 368999987643
No 321
>PRK13054 lipid kinase; Reviewed
Probab=34.95 E-value=2.7e+02 Score=23.31 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=29.4
Q ss_pred EEEEEecCC-----CHHHHHHHHHHCCCeEEEEcC--CCC---------CCCCCEEEEcCCchhH
Q 030035 2 VVGVLALQG-----SFNEHIAALKRLGVKGVEIRK--PDQ---------LQNVSSLIIPGGESTT 50 (184)
Q Consensus 2 ~IgVl~~qG-----~~~~~~~~L~~~G~~v~~v~~--~~~---------l~~~DglIipGG~~~~ 50 (184)
|+.++.... .+.+..+.|++.|.++.+..+ +.+ ..++|.||+-||-+|.
T Consensus 5 ~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl 69 (300)
T PRK13054 5 KSLLILNGKSAGNEELREAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGTI 69 (300)
T ss_pred eEEEEECCCccchHHHHHHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccHH
Confidence 555554422 244556678888888665432 111 1367899999986654
No 322
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=34.65 E-value=2.1e+02 Score=22.58 Aligned_cols=32 Identities=19% Similarity=0.129 Sum_probs=21.0
Q ss_pred HHHHHHHCCCeEEEEcCCCC----------C--CCCCEEEEcCC
Q 030035 15 HIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGG 46 (184)
Q Consensus 15 ~~~~L~~~G~~v~~v~~~~~----------l--~~~DglIipGG 46 (184)
+.+.+++.|+.+.+.....+ + .++|++|+-+.
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (268)
T cd06273 21 FQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGL 64 (268)
T ss_pred HHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 34567778998887653211 1 26899998764
No 323
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.55 E-value=1.8e+02 Score=23.87 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=20.3
Q ss_pred HHHHHHCCCeEEEEcCCCC-----------C-C--CCCEEEEcCC
Q 030035 16 IAALKRLGVKGVEIRKPDQ-----------L-Q--NVSSLIIPGG 46 (184)
Q Consensus 16 ~~~L~~~G~~v~~v~~~~~-----------l-~--~~DglIipGG 46 (184)
.+++++.|+++.+.....+ + . .+||+|+.+.
T Consensus 23 ~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~ 67 (305)
T cd06324 23 QAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNE 67 (305)
T ss_pred HHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCC
Confidence 3556778998877743211 1 3 7999999654
No 324
>PF09198 T4-Gluco-transf: Bacteriophage T4 beta-glucosyltransferase; InterPro: IPR015281 Members of this family are DNA-modifying enzymes encoded by bacteriophage T4 that transfer glucose from uridine diphosphoglucose to 5-hydroxymethyl cytosine bases of phage T4 DNA []. ; PDB: 1J39_A 1SXQ_B 1NZF_A 1M5R_B 1JEJ_A 1JIV_A 1NZD_A 1NVK_A 2BGU_A 1JIU_A ....
Probab=34.29 E-value=97 Score=17.96 Aligned_cols=26 Identities=12% Similarity=0.397 Sum_probs=14.6
Q ss_pred CEEEEEecCCCH--------HH---HHHHHHHCCCeE
Q 030035 1 MVVGVLALQGSF--------NE---HIAALKRLGVKG 26 (184)
Q Consensus 1 m~IgVl~~qG~~--------~~---~~~~L~~~G~~v 26 (184)
|||+|+.+.-|+ .| +.+.+++.|.++
T Consensus 1 mkiai~n~gnni~~fkt~p~setiyl~~~~~~mgl~v 37 (38)
T PF09198_consen 1 MKIAIINMGNNIQNFKTTPSSETIYLFKCISDMGLNV 37 (38)
T ss_dssp -EEEEEESSS--SSSSSHHHHHHHHHHHHHHTTT-EE
T ss_pred CeEEEEecCCceeceeecCccceEeHHHHHHHhCCCC
Confidence 899999875543 12 335567777665
No 325
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=33.75 E-value=2.3e+02 Score=22.16 Aligned_cols=31 Identities=19% Similarity=0.142 Sum_probs=20.2
Q ss_pred HHHHHHCCCeEEEEcCCC----------CC--CCCCEEEEcCC
Q 030035 16 IAALKRLGVKGVEIRKPD----------QL--QNVSSLIIPGG 46 (184)
Q Consensus 16 ~~~L~~~G~~v~~v~~~~----------~l--~~~DglIipGG 46 (184)
.+++++.|+.+.+..... .+ ..+|++|+..+
T Consensus 22 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 64 (266)
T cd06282 22 QEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVA 64 (266)
T ss_pred HHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 356777899888774321 11 36899998554
No 326
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=33.49 E-value=2.2e+02 Score=21.87 Aligned_cols=46 Identities=24% Similarity=0.372 Sum_probs=27.4
Q ss_pred EEEEEecC-CC--HHHH----HHHHHHCCCeEEEEcCCCC----------C--CCCCEEEEcCCc
Q 030035 2 VVGVLALQ-GS--FNEH----IAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGE 47 (184)
Q Consensus 2 ~IgVl~~q-G~--~~~~----~~~L~~~G~~v~~v~~~~~----------l--~~~DglIipGG~ 47 (184)
|||++.-. ++ +.++ .+++++.|+++.+.....+ + .++|++|+.+..
T Consensus 1 ~ig~v~~~~~~~~~~~~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~ 65 (264)
T cd01537 1 TIGVLVPDLDNPFFAQVLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSD 65 (264)
T ss_pred CeEEEEcCCCChHHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 57777633 11 2223 3456678998887754311 1 378999998754
No 327
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=33.16 E-value=2.4e+02 Score=27.41 Aligned_cols=78 Identities=8% Similarity=-0.033 Sum_probs=44.3
Q ss_pred EEEEEecCCCHHHH-HHHHHHCCCeEEEEcCC---------------------CCCCCCCEEEEcCCchhH---HHHHHh
Q 030035 2 VVGVLALQGSFNEH-IAALKRLGVKGVEIRKP---------------------DQLQNVSSLIIPGGESTT---MARLAE 56 (184)
Q Consensus 2 ~IgVl~~qG~~~~~-~~~L~~~G~~v~~v~~~---------------------~~l~~~DglIipGG~~~~---~~~l~~ 56 (184)
+|.|+.+.|.=.+. .+.|.+.|++|...... +.+.++|.+|++-|-+.. +....+
T Consensus 6 ~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~~ 85 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAKS 85 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHHH
Confidence 37888887766664 78899999887765421 113467888886663221 222222
Q ss_pred c----CChHHHHHHHHHcCCcEEEEchH
Q 030035 57 Y----HNLFPALREFVKMGKPVWGTCAG 80 (184)
Q Consensus 57 ~----~~l~~~l~~~~~~g~PvlGIC~G 80 (184)
. .+-.+++.++. .++|+.||..-
T Consensus 86 ~gi~v~~~~el~~~~~-~~~~~IaITGT 112 (809)
T PRK14573 86 RGNRLVHRAELLAELM-QEQISILVSGS 112 (809)
T ss_pred CCCcEEeHHHHHHHHH-cCCCEEEEECC
Confidence 1 01233444443 34588888753
No 328
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=33.15 E-value=86 Score=26.05 Aligned_cols=41 Identities=29% Similarity=0.306 Sum_probs=28.5
Q ss_pred CCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHHHhhh
Q 030035 37 NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAV 89 (184)
Q Consensus 37 ~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa~~~~ 89 (184)
++|+++|.= +++. ..+.+|+.. .+|+.|||-...+.+..+.
T Consensus 69 GvdaiiIaC-f~DP---------gl~~~Re~~--~~PviGi~eAsv~~A~~vg 109 (230)
T COG4126 69 GVDAIIIAC-FSDP---------GLAAARERA--AIPVIGICEASVLAALFVG 109 (230)
T ss_pred CCcEEEEEe-cCCh---------HHHHHHHHh--CCCceehhHHHHHHHHHhc
Confidence 577777742 2222 345677764 7999999999888887764
No 329
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=32.86 E-value=1.3e+02 Score=23.17 Aligned_cols=66 Identities=20% Similarity=0.236 Sum_probs=39.1
Q ss_pred HHHHHHHCCCeEEEEc---CCCCC------CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHH
Q 030035 15 HIAALKRLGVKGVEIR---KPDQL------QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLA 85 (184)
Q Consensus 15 ~~~~L~~~G~~v~~v~---~~~~l------~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa 85 (184)
..++|+..|++++... ++++. ++.|.|.+++=... +..+.. ++.+.+|++- -..|+.++.|-+-..
T Consensus 32 ia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~-h~~l~~--~lve~lre~G--~~~i~v~~GGvip~~ 106 (143)
T COG2185 32 IARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGG-HLTLVP--GLVEALREAG--VEDILVVVGGVIPPG 106 (143)
T ss_pred HHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccch-HHHHHH--HHHHHHHHhC--CcceEEeecCccCch
Confidence 4578999999998753 44332 47899999872111 111222 2566666542 246777777755443
No 330
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.63 E-value=2.6e+02 Score=22.41 Aligned_cols=30 Identities=20% Similarity=0.006 Sum_probs=20.1
Q ss_pred HHHHHHCCCeEEEEcCCCC-------C-----CCCCEEEEcC
Q 030035 16 IAALKRLGVKGVEIRKPDQ-------L-----QNVSSLIIPG 45 (184)
Q Consensus 16 ~~~L~~~G~~v~~v~~~~~-------l-----~~~DglIipG 45 (184)
.+.+++.|+++.+.....+ + .++|++|+..
T Consensus 22 ~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~ 63 (272)
T cd06313 22 DEAGKLLGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDP 63 (272)
T ss_pred HHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 3556778999888753311 1 4689999954
No 331
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=32.39 E-value=2.4e+02 Score=22.29 Aligned_cols=53 Identities=23% Similarity=0.258 Sum_probs=28.4
Q ss_pred HHHHHH--CCCeEEEEcCCCC-------C-----CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEE
Q 030035 16 IAALKR--LGVKGVEIRKPDQ-------L-----QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (184)
Q Consensus 16 ~~~L~~--~G~~v~~v~~~~~-------l-----~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGI 77 (184)
.+++++ .|..+.+.....+ + .++|++|+.+..... ..+.++++.+.++|+.-+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~~~~~---------~~~~i~~~~~~~ipvv~~ 88 (271)
T cd06321 22 EAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAVDSKG---------IAPAVKRAQAAGIVVVAV 88 (271)
T ss_pred HHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCCChhH---------hHHHHHHHHHCCCeEEEe
Confidence 356777 5666655432111 1 378999996543221 123344444557776655
No 332
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=32.14 E-value=1.4e+02 Score=26.38 Aligned_cols=35 Identities=29% Similarity=0.474 Sum_probs=23.7
Q ss_pred HHHHHHHCCCeEEEEc---CC-C--------CCCCCCEEEEcCCchh
Q 030035 15 HIAALKRLGVKGVEIR---KP-D--------QLQNVSSLIIPGGEST 49 (184)
Q Consensus 15 ~~~~L~~~G~~v~~v~---~~-~--------~l~~~DglIipGG~~~ 49 (184)
+...|++.|+++.... +. + -++++|.||.+||.+.
T Consensus 200 l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DliittGG~s~ 246 (394)
T cd00887 200 LAALLRELGAEVVDLGIVPDDPEALREALEEALEEADVVITSGGVSV 246 (394)
T ss_pred HHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhhCCCEEEEeCCCCC
Confidence 4466889999876653 21 1 1246999999998653
No 333
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=31.96 E-value=1.5e+02 Score=23.84 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=33.0
Q ss_pred CEEEEEecCCCHHHHHHHHHHCCCeEEEEcC------CC----CCC-CCCEEEEcC
Q 030035 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIRK------PD----QLQ-NVSSLIIPG 45 (184)
Q Consensus 1 m~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~------~~----~l~-~~DglIipG 45 (184)
|||.|---.+.-.++.+.|++.|+++..+.. .. .+. .+|.||++-
T Consensus 1 m~VLvTRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~l~~~~d~iifTS 56 (240)
T PRK09189 1 MRVLVTRPEPAAERTAARLRAMGHEPVLLPLSRPVHDVAAAFTALSEPHGAIAVTS 56 (240)
T ss_pred CeEEEECCCCchHHHHHHHHHCCCceEEecccccccChhhhhhhhcCCcCEEEEEC
Confidence 7888877777778888999999998877631 11 133 478999875
No 334
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=31.89 E-value=2.5e+02 Score=25.45 Aligned_cols=29 Identities=24% Similarity=-0.006 Sum_probs=22.8
Q ss_pred EEEEEecCCCHHHHHHHHHHCCCeEEEEc
Q 030035 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (184)
Q Consensus 2 ~IgVl~~qG~~~~~~~~L~~~G~~v~~v~ 30 (184)
||.|+.+.|.=.+..+.|.+.|+++....
T Consensus 9 ~i~v~G~G~sG~s~a~~L~~~G~~v~~~D 37 (498)
T PRK02006 9 MVLVLGLGESGLAMARWCARHGARLRVAD 37 (498)
T ss_pred EEEEEeecHhHHHHHHHHHHCCCEEEEEc
Confidence 68888887766678889999998776654
No 335
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=31.85 E-value=2.5e+02 Score=21.96 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=20.6
Q ss_pred HHHHHCCCeEEEEcCCCC----------C--CCCCEEEEcCCc
Q 030035 17 AALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGE 47 (184)
Q Consensus 17 ~~L~~~G~~v~~v~~~~~----------l--~~~DglIipGG~ 47 (184)
+.+++.|.++.+.....+ + .++||+|+.+..
T Consensus 23 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~ 65 (268)
T cd01575 23 DVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGLE 65 (268)
T ss_pred HHHHHcCCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCCC
Confidence 456778998877643211 1 379999997753
No 336
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=31.83 E-value=90 Score=21.88 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHCCCeEEEE-cC--C-------------CCCCCCCEEEEcCCc
Q 030035 11 SFNEHIAALKRLGVKGVEI-RK--P-------------DQLQNVSSLIIPGGE 47 (184)
Q Consensus 11 ~~~~~~~~L~~~G~~v~~v-~~--~-------------~~l~~~DglIipGG~ 47 (184)
+|.+..+.|++.|.+++-= .. + ..|..||+|++-+|.
T Consensus 17 ~f~~~a~~L~~~G~~vvnPa~~~~~~~~~~~~ym~~~l~~L~~cD~i~~l~gW 69 (92)
T PF14359_consen 17 AFNAAAKRLRAKGYEVVNPAELGIPEGLSWEEYMRICLAMLSDCDAIYMLPGW 69 (92)
T ss_pred HHHHHHHHHHHCCCEEeCchhhCCCCCCCHHHHHHHHHHHHHhCCEEEEcCCc
Confidence 3566677899999765421 11 1 124589999887774
No 337
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=31.77 E-value=33 Score=30.51 Aligned_cols=43 Identities=23% Similarity=0.468 Sum_probs=26.4
Q ss_pred CCCCCCCEEEEcC-Cc---hhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHH
Q 030035 33 DQLQNVSSLIIPG-GE---STTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (184)
Q Consensus 33 ~~l~~~DglIipG-G~---~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~ 81 (184)
+.++++| |||+| |. .+.+.+.. ....+.+.+.++|++.||.-.
T Consensus 279 ~~l~~AD-lVITGEG~~D~Qtl~GK~p-----~~Va~~A~~~~vPviai~G~v 325 (375)
T TIGR00045 279 QKIKDAD-LVITGEGRLDRQSLMGKAP-----VGVAKRAKKYGVPVIAIAGSL 325 (375)
T ss_pred HHhcCCC-EEEECCCcccccccCCchH-----HHHHHHHHHhCCeEEEEeccc
Confidence 3467888 67777 73 22333322 234445556799999999754
No 338
>PRK05568 flavodoxin; Provisional
Probab=31.71 E-value=1.4e+02 Score=21.70 Aligned_cols=44 Identities=9% Similarity=0.155 Sum_probs=27.6
Q ss_pred EEEEEec--CCCHHHHHHH----HHHCCCeEEEEcCC----CCCCCCCEEEEcC
Q 030035 2 VVGVLAL--QGSFNEHIAA----LKRLGVKGVEIRKP----DQLQNVSSLIIPG 45 (184)
Q Consensus 2 ~IgVl~~--qG~~~~~~~~----L~~~G~~v~~v~~~----~~l~~~DglIipG 45 (184)
||.|+.. .||-..+.++ +++.|+++.++.-. .++.++|+|+|.-
T Consensus 3 ~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgs 56 (142)
T PRK05568 3 KINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEASVDDVKGADVVALGS 56 (142)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHhCCEEEEEC
Confidence 4666544 5666555544 45578887776422 2467899998854
No 339
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=31.55 E-value=69 Score=23.49 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=23.6
Q ss_pred HHHHHHHHCCCeEEEE---cCC-CC--------CCCCCEEEEcCCch
Q 030035 14 EHIAALKRLGVKGVEI---RKP-DQ--------LQNVSSLIIPGGES 48 (184)
Q Consensus 14 ~~~~~L~~~G~~v~~v---~~~-~~--------l~~~DglIipGG~~ 48 (184)
-+.+.|++.|+++... .+. +. ++++|.||..||.+
T Consensus 22 ~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g 68 (135)
T smart00852 22 ALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTG 68 (135)
T ss_pred HHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 3567899999876543 222 11 24689999999865
No 340
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=31.46 E-value=2.6e+02 Score=24.57 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=19.2
Q ss_pred CEEEEEecCCCHHH-HHHHHH-HCCCe
Q 030035 1 MVVGVLALQGSFNE-HIAALK-RLGVK 25 (184)
Q Consensus 1 m~IgVl~~qG~~~~-~~~~L~-~~G~~ 25 (184)
|||||+.-.|.... +++.|. +..++
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~~f~ 32 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETKFN 32 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCCCCC
Confidence 68999999998865 678887 45555
No 341
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=31.37 E-value=2e+02 Score=24.51 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=22.2
Q ss_pred HHHHHHHHHCCCeEEEEc--CCCC---------CCCCCEEEEcCCchh
Q 030035 13 NEHIAALKRLGVKGVEIR--KPDQ---------LQNVSSLIIPGGEST 49 (184)
Q Consensus 13 ~~~~~~L~~~G~~v~~v~--~~~~---------l~~~DglIipGG~~~ 49 (184)
.+..+.|++.|.+..... ...+ ..++|.||..||-+|
T Consensus 23 ~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGT 70 (301)
T COG1597 23 REVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGT 70 (301)
T ss_pred HHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcch
Confidence 335567888888766543 1111 136888888887554
No 342
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=31.22 E-value=50 Score=29.17 Aligned_cols=38 Identities=29% Similarity=0.433 Sum_probs=26.0
Q ss_pred CCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchHHHHHH
Q 030035 37 NVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCAGLIFLA 85 (184)
Q Consensus 37 ~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~QlLa 85 (184)
..|.|++-||-+|.- .+.+.+....|+|||-+|--+-+
T Consensus 100 gVdlIvfaGGDGTar-----------DVa~av~~~vPvLGipaGvk~~S 137 (355)
T COG3199 100 GVDLIVFAGGDGTAR-----------DVAEAVGADVPVLGIPAGVKNYS 137 (355)
T ss_pred CceEEEEeCCCccHH-----------HHHhhccCCCceEeeccccceec
Confidence 578888888877651 12233356899999999865544
No 343
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=31.13 E-value=1e+02 Score=28.59 Aligned_cols=79 Identities=13% Similarity=0.132 Sum_probs=43.5
Q ss_pred CEEEEEecCCCH--HHHHHHHHHCCCeEEEEcCC--CC-CCCCCEEEEcCCc----hhHHHHHHhcCChHHHHHHHHHcC
Q 030035 1 MVVGVLALQGSF--NEHIAALKRLGVKGVEIRKP--DQ-LQNVSSLIIPGGE----STTMARLAEYHNLFPALREFVKMG 71 (184)
Q Consensus 1 m~IgVl~~qG~~--~~~~~~L~~~G~~v~~v~~~--~~-l~~~DglIipGG~----~~~~~~l~~~~~l~~~l~~~~~~g 71 (184)
||+-|+.-.-++ ..+.+.|...|+++.++.-. .. ..+.+.++|.+.. +..|.+ .|-.-.---+...+
T Consensus 386 frVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I~a~syim~evtkvfLGahailsNG~vysR----~GTa~valvAna~n 461 (556)
T KOG1467|consen 386 FRVVVVDSRPNLEGRKLLRRLVDRGINCTYVLINAASYIMLEVTKVFLGAHAILSNGAVYSR----VGTACVALVANAFN 461 (556)
T ss_pred eEEEEEeCCCCcchHHHHHHHHHcCCCeEEEEehhHHHHHHhcceeeechhhhhcCcchhhh----cchHHHHHHhcccC
Confidence 355555544333 45788899999988777522 22 2456666665532 223322 23221111222358
Q ss_pred CcEEEEchHHHH
Q 030035 72 KPVWGTCAGLIF 83 (184)
Q Consensus 72 ~PvlGIC~G~Ql 83 (184)
+||+-.|=-+-.
T Consensus 462 VPVlVCCE~yKF 473 (556)
T KOG1467|consen 462 VPVLVCCEAYKF 473 (556)
T ss_pred CCEEEEechhhh
Confidence 999999976644
No 344
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=31.04 E-value=1.5e+02 Score=21.69 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=33.7
Q ss_pred HHHHHHHCCCeEEEEcCCCCCCCCCEEEEcC--CchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035 15 HIAALKRLGVKGVEIRKPDQLQNVSSLIIPG--GESTTMARLAEYHNLFPALREFVKMGKPVW 75 (184)
Q Consensus 15 ~~~~L~~~G~~v~~v~~~~~l~~~DglIipG--G~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl 75 (184)
+.+.|++.|.++-.++...+ +|.+++=| |....+. ......++++++ +.|++
T Consensus 19 l~~~l~~~~~~v~~~kp~~~---~d~vliEGaGg~~~p~~---~~~~~~d~~~~~---~~~vl 72 (134)
T cd03109 19 LARALKEKGYRVAPLKPVQT---YDFVLVEGAGGLCVPLK---EDFTNADVAKEL---NLPAI 72 (134)
T ss_pred HHHHHHHCCCeEEEEecCCC---CCEEEEECCCccccCCC---CCCCHHHHHHHh---CCCEE
Confidence 56889999999999976554 89999954 5432211 112356677665 55653
No 345
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.03 E-value=2.6e+02 Score=21.90 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=19.6
Q ss_pred HHHHHCCCeEEEEcCCCC----------C--CCCCEEEEcCC
Q 030035 17 AALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGG 46 (184)
Q Consensus 17 ~~L~~~G~~v~~v~~~~~----------l--~~~DglIipGG 46 (184)
+++++.|.++.+.....+ + .++|++|+.+.
T Consensus 23 ~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (268)
T cd06289 23 EVLEEAGYTVFLANSGEDVERQEQLLSTMLEHGVAGIILCPA 64 (268)
T ss_pred HHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 456778988877643211 1 36899999764
No 346
>PRK13337 putative lipid kinase; Reviewed
Probab=31.00 E-value=3.2e+02 Score=22.92 Aligned_cols=49 Identities=16% Similarity=0.309 Sum_probs=29.7
Q ss_pred EEEEEecC--CC------HHHHHHHHHHCCCeEEEEc--CCCC-------C--CCCCEEEEcCCchhH
Q 030035 2 VVGVLALQ--GS------FNEHIAALKRLGVKGVEIR--KPDQ-------L--QNVSSLIIPGGESTT 50 (184)
Q Consensus 2 ~IgVl~~q--G~------~~~~~~~L~~~G~~v~~v~--~~~~-------l--~~~DglIipGG~~~~ 50 (184)
|+.++.-+ |+ +.+..+.|++.|.++.+.. ...+ . +++|.||+-||-+|.
T Consensus 3 r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl 70 (304)
T PRK13337 3 RARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDGTL 70 (304)
T ss_pred eEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCCHH
Confidence 56666542 32 2345667888998866543 2211 1 357899999986553
No 347
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=30.79 E-value=2.6e+02 Score=21.73 Aligned_cols=45 Identities=27% Similarity=0.366 Sum_probs=26.5
Q ss_pred EEEEEecC--C-CHHHHH----HHHHHCCCeEEEEcCCC----------CC--CCCCEEEEcCC
Q 030035 2 VVGVLALQ--G-SFNEHI----AALKRLGVKGVEIRKPD----------QL--QNVSSLIIPGG 46 (184)
Q Consensus 2 ~IgVl~~q--G-~~~~~~----~~L~~~G~~v~~v~~~~----------~l--~~~DglIipGG 46 (184)
|||++.-. . -+.++. +++++.|+++.+..... .+ .++|++|+.+.
T Consensus 1 ~ig~i~p~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~ 64 (267)
T cd01536 1 KIGLVVPSLNNPFWQAMNKGAEAAAKELGVELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPV 64 (267)
T ss_pred CEEEEeccccCHHHHHHHHHHHHHHHhcCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 57877632 1 233333 44566788888875431 11 37899998764
No 348
>PRK09932 glycerate kinase II; Provisional
Probab=30.60 E-value=39 Score=30.16 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=26.1
Q ss_pred CCCCCCCEEEEcC-Cch---hHHHHHHhcCChHHHHHHHHHcCCcEEEEchHH
Q 030035 33 DQLQNVSSLIIPG-GES---TTMARLAEYHNLFPALREFVKMGKPVWGTCAGL 81 (184)
Q Consensus 33 ~~l~~~DglIipG-G~~---~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G~ 81 (184)
+.++++| |||+| |.- +.+.+. .....+.+.+.++|+..||.-.
T Consensus 280 ~~l~~AD-lVITGEG~~D~Qt~~GK~-----p~~Va~~A~~~~~Pvi~i~G~~ 326 (381)
T PRK09932 280 QAVQGAA-LVITGEGRIDSQTAGGKA-----PLGVASVAKQFNVPVIGIAGVL 326 (381)
T ss_pred HHhccCC-EEEECCCcccccccCCcc-----HHHHHHHHHHcCCCEEEEeccc
Confidence 4467888 67777 632 222322 2334444555689999999864
No 349
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=30.56 E-value=1.1e+02 Score=27.49 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=23.2
Q ss_pred HHHHHHHCCCeEEEE---cCC-C-------C-CCCCCEEEEcCCch
Q 030035 15 HIAALKRLGVKGVEI---RKP-D-------Q-LQNVSSLIIPGGES 48 (184)
Q Consensus 15 ~~~~L~~~G~~v~~v---~~~-~-------~-l~~~DglIipGG~~ 48 (184)
+...|++.|+++... .+. + + ..++|.||++||.+
T Consensus 209 l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DlvIttGG~S 254 (411)
T PRK10680 209 VHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVS 254 (411)
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhccCCCEEEEcCCCC
Confidence 446689999987654 222 1 1 35799999999864
No 350
>PRK09453 phosphodiesterase; Provisional
Probab=30.51 E-value=1e+02 Score=23.73 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=14.0
Q ss_pred CEEEEEe-cCCCHHHHHHHHH
Q 030035 1 MVVGVLA-LQGSFNEHIAALK 20 (184)
Q Consensus 1 m~IgVl~-~qG~~~~~~~~L~ 20 (184)
|||+|++ ..|++....+.++
T Consensus 1 mri~viSD~Hg~~~~~~~~l~ 21 (182)
T PRK09453 1 MKLMFASDTHGSLPATEKALE 21 (182)
T ss_pred CeEEEEEeccCCHHHHHHHHH
Confidence 8999997 5888765444443
No 351
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=30.37 E-value=2.7e+02 Score=21.95 Aligned_cols=45 Identities=20% Similarity=0.137 Sum_probs=26.6
Q ss_pred EEEEEec--CCCHHH-----HHHHHHH-CCCeEEEEcCCCC-------C-----CCCCEEEEcCC
Q 030035 2 VVGVLAL--QGSFNE-----HIAALKR-LGVKGVEIRKPDQ-------L-----QNVSSLIIPGG 46 (184)
Q Consensus 2 ~IgVl~~--qG~~~~-----~~~~L~~-~G~~v~~v~~~~~-------l-----~~~DglIipGG 46 (184)
||||+.- ...|.. +.+++++ .|+++.+.....+ + .++||+|+.+.
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 65 (272)
T cd06301 1 KIGVSMANFDDNFLTLLRNAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPV 65 (272)
T ss_pred CeeEeecccCCHHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 5777652 122222 3456777 7888887653211 1 37899999654
No 352
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=30.28 E-value=1.2e+02 Score=25.25 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=22.6
Q ss_pred HHHHHHHHHCCCeEEEEcCCCCC------CCCCEEEEc
Q 030035 13 NEHIAALKRLGVKGVEIRKPDQL------QNVSSLIIP 44 (184)
Q Consensus 13 ~~~~~~L~~~G~~v~~v~~~~~l------~~~DglIip 44 (184)
..+.++|++.|+++..+...+++ .++|.++.-
T Consensus 26 ~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~ 63 (304)
T PRK01372 26 AAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNA 63 (304)
T ss_pred HHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEe
Confidence 45678999999999888543322 257888763
No 353
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=30.21 E-value=1.6e+02 Score=23.34 Aligned_cols=74 Identities=28% Similarity=0.213 Sum_probs=38.3
Q ss_pred CEEEEEec---CCCHHH-----HHHHHHHCCCeEEEEc--C--C-----------------CCCCCCCEEEEcC-----C
Q 030035 1 MVVGVLAL---QGSFNE-----HIAALKRLGVKGVEIR--K--P-----------------DQLQNVSSLIIPG-----G 46 (184)
Q Consensus 1 m~IgVl~~---qG~~~~-----~~~~L~~~G~~v~~v~--~--~-----------------~~l~~~DglIipG-----G 46 (184)
|||.+++- .+.+.. ..+.+++.|.++..+. + . +.+.++|+||+.- +
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y~~s 80 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVYKAS 80 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCccCCC
Confidence 78776642 222222 2345666788887653 1 0 1235689998843 2
Q ss_pred chhHHHHHHhcCChHHHHHHHHHcCCcEEEEchH
Q 030035 47 ESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (184)
Q Consensus 47 ~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G 80 (184)
.+..+.. +++++....=.+||++=++.|
T Consensus 81 ~pg~LKn------~iD~l~~~~l~~K~v~iiat~ 108 (191)
T PRK10569 81 FSGALKT------LLDLLPERALEHKVVLPLATG 108 (191)
T ss_pred CCHHHHH------HHHhCChhhhCCCEEEEEEec
Confidence 3333322 344443222358888766654
No 354
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=30.05 E-value=51 Score=28.54 Aligned_cols=39 Identities=23% Similarity=0.482 Sum_probs=24.2
Q ss_pred CCCCCEEEE-cCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEc
Q 030035 35 LQNVSSLII-PGGESTTMARLAEYHNLFPALREFVKMGKPVWGTC 78 (184)
Q Consensus 35 l~~~DglIi-pGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC 78 (184)
+.++|.||| ||..-+.+.-.. +..-|++++ ..+|+.+||
T Consensus 183 I~~AD~IiiGPgnp~TSI~P~L----~v~gi~eAL-~~a~vV~Vs 222 (303)
T PRK13606 183 IEEADAVIIGPSNPVTSIGPIL----AVPGIREAL-TEAPVVAVS 222 (303)
T ss_pred HHhCCEEEECCCccHHhhchhc----cchhHHHHH-hCCCEEEEc
Confidence 457898888 555433322111 244566666 688999988
No 355
>PRK13057 putative lipid kinase; Reviewed
Probab=30.02 E-value=1.8e+02 Score=24.22 Aligned_cols=39 Identities=31% Similarity=0.392 Sum_probs=26.4
Q ss_pred HHHHHHHHHHCCCeEEEEcCC--C-------C-CCCCCEEEEcCCchhH
Q 030035 12 FNEHIAALKRLGVKGVEIRKP--D-------Q-LQNVSSLIIPGGESTT 50 (184)
Q Consensus 12 ~~~~~~~L~~~G~~v~~v~~~--~-------~-l~~~DglIipGG~~~~ 50 (184)
...+.+.|++.|.++....+. . + ..++|.||+-||-+|.
T Consensus 15 ~~~i~~~l~~~g~~~~~~~t~~~~~a~~~~~~~~~~~d~iiv~GGDGTv 63 (287)
T PRK13057 15 LAAARAALEAAGLELVEPPAEDPDDLSEVIEAYADGVDLVIVGGGDGTL 63 (287)
T ss_pred HHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHcCCCEEEEECchHHH
Confidence 445667788899887765432 1 1 2467999999987654
No 356
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=29.79 E-value=1.1e+02 Score=24.77 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=29.3
Q ss_pred EEEEEecCCCH--HHHHHHHHHCCCeEEEEcCCC----------CCCCCCEEEEc
Q 030035 2 VVGVLALQGSF--NEHIAALKRLGVKGVEIRKPD----------QLQNVSSLIIP 44 (184)
Q Consensus 2 ~IgVl~~qG~~--~~~~~~L~~~G~~v~~v~~~~----------~l~~~DglIip 44 (184)
|||||+..-.. ..+.+++++.|+++..+...+ .+..+|.++.-
T Consensus 1 ~~~~~~~~~~~~~~~l~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r 55 (277)
T TIGR00768 1 KLAILYDRIRLDEKMLKEAAEELGIDYKVVTPPAIPLTFNEGPRELAELDVVIVR 55 (277)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCceEEEEhHHcEEeccCCCccCCCCCEEEEe
Confidence 68999875544 447789999999988775221 14467877653
No 357
>PRK13055 putative lipid kinase; Reviewed
Probab=29.74 E-value=3.2e+02 Score=23.36 Aligned_cols=49 Identities=16% Similarity=0.348 Sum_probs=29.3
Q ss_pred EEEEEecC--CC------HHHHHHHHHHCCCeEEEEc---CCCC-------C--CCCCEEEEcCCchhH
Q 030035 2 VVGVLALQ--GS------FNEHIAALKRLGVKGVEIR---KPDQ-------L--QNVSSLIIPGGESTT 50 (184)
Q Consensus 2 ~IgVl~~q--G~------~~~~~~~L~~~G~~v~~v~---~~~~-------l--~~~DglIipGG~~~~ 50 (184)
|+.++.-+ |+ +.++.+.|++.|+++.+.. ...+ . .++|.||+-||-+|.
T Consensus 4 r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGTl 72 (334)
T PRK13055 4 RARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGTI 72 (334)
T ss_pred eEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCHH
Confidence 67776642 33 2345567888898766432 1111 1 357899999986553
No 358
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=29.56 E-value=3.1e+02 Score=22.35 Aligned_cols=34 Identities=9% Similarity=0.078 Sum_probs=20.5
Q ss_pred CEEEEEe-cCCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcC
Q 030035 1 MVVGVLA-LQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG 45 (184)
Q Consensus 1 m~IgVl~-~qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipG 45 (184)
|||++++ +.||+..+.+.++.. + -.++|.+|+.|
T Consensus 5 ~kIl~iSDiHgn~~~le~l~~~~----------~-~~~~D~vv~~G 39 (224)
T cd07388 5 RYVLATSNPKGDLEALEKLVGLA----------P-ETGADAIVLIG 39 (224)
T ss_pred eEEEEEEecCCCHHHHHHHHHHH----------h-hcCCCEEEECC
Confidence 5788876 577777655555433 0 12466777776
No 359
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=29.48 E-value=2.1e+02 Score=21.59 Aligned_cols=75 Identities=9% Similarity=0.035 Sum_probs=40.9
Q ss_pred EEEEEecCCCHHH-----HHHHHHHCCCeEEEEc---CCCCC------CCCCEEEEcCCchhHHHHHHhcCChHHHHHHH
Q 030035 2 VVGVLALQGSFNE-----HIAALKRLGVKGVEIR---KPDQL------QNVSSLIIPGGESTTMARLAEYHNLFPALREF 67 (184)
Q Consensus 2 ~IgVl~~qG~~~~-----~~~~L~~~G~~v~~v~---~~~~l------~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~ 67 (184)
||-+-...|+.++ +..+|+..|++++..- +++++ .++|.+-++.=..+.+..+.+ +.+.|++.
T Consensus 3 ~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~---~~~~l~~~ 79 (134)
T TIGR01501 3 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILVSSLYGHGEIDCKG---LRQKCDEA 79 (134)
T ss_pred eEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecccccCHHHHHH---HHHHHHHC
Confidence 3444445666655 3467899999998863 22222 368888887622233333322 45555543
Q ss_pred HHcCCcEEEEchHH
Q 030035 68 VKMGKPVWGTCAGL 81 (184)
Q Consensus 68 ~~~g~PvlGIC~G~ 81 (184)
--.+ +. =+|.|.
T Consensus 80 gl~~-~~-vivGG~ 91 (134)
T TIGR01501 80 GLEG-IL-LYVGGN 91 (134)
T ss_pred CCCC-CE-EEecCC
Confidence 2223 33 256664
No 360
>PRK06851 hypothetical protein; Provisional
Probab=29.36 E-value=97 Score=27.49 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=25.7
Q ss_pred HHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcC
Q 030035 13 NEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPG 45 (184)
Q Consensus 13 ~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipG 45 (184)
..+.+.+.+.|.++.....+.+-+..|+||||.
T Consensus 48 ~~i~~~~~~~g~~Ve~~~~~~d~~slDgviip~ 80 (367)
T PRK06851 48 KKIGEEFLEKGYDVEFLHCSSDNDSLDGVIIPE 80 (367)
T ss_pred HHHHHHHHHcCCeEEEEEcCCCCCceeeEEecC
Confidence 335566777899999887766667899999998
No 361
>PRK06851 hypothetical protein; Provisional
Probab=29.32 E-value=1.1e+02 Score=27.15 Aligned_cols=31 Identities=16% Similarity=0.069 Sum_probs=26.1
Q ss_pred HHHHHHHCCCeEEEEcCCCCCCCCCEEEEcC
Q 030035 15 HIAALKRLGVKGVEIRKPDQLQNVSSLIIPG 45 (184)
Q Consensus 15 ~~~~L~~~G~~v~~v~~~~~l~~~DglIipG 45 (184)
+.+.+.+.|..+.+.+.+-+-+..|+||||.
T Consensus 234 i~~~a~~~G~~v~~~hC~~dPdslD~viIPe 264 (367)
T PRK06851 234 IAKAAEERGFDVEVYHCGFDPDSLDMVIIPE 264 (367)
T ss_pred HHHHHHhCCCeEEEEeCCCCCCCcceEEecc
Confidence 4566778899999999877778899999998
No 362
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=29.27 E-value=1.2e+02 Score=25.21 Aligned_cols=72 Identities=24% Similarity=0.278 Sum_probs=35.8
Q ss_pred EEEEEecCCC------HHHHHHHHHHCCCeEEEE--cCCCC--------CCCCCEEEEcCCchhHHHHHHhcCChHHHHH
Q 030035 2 VVGVLALQGS------FNEHIAALKRLGVKGVEI--RKPDQ--------LQNVSSLIIPGGESTTMARLAEYHNLFPALR 65 (184)
Q Consensus 2 ~IgVl~~qG~------~~~~~~~L~~~G~~v~~v--~~~~~--------l~~~DglIipGG~~~~~~~l~~~~~l~~~l~ 65 (184)
|||||.-... +....+..++.|++++.+ .+.++ .++.|+++++... ... . .....++
T Consensus 133 ~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~~l~~~~da~~~~~~~-~~~----~--~~~~i~~ 205 (294)
T PF04392_consen 133 RIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVEIPVPSSEDLEQALEALAEKVDALYLLPDN-LVD----S--NFEAILQ 205 (294)
T ss_dssp EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEEEEESSGGGHHHHHHHHCTT-SEEEE-S-H-HHH----H--THHHHHH
T ss_pred EEEEEecCCCccHHHHHHHHHHHHHHcCCEEEEEecCcHhHHHHHHHHhhccCCEEEEECCc-chH----h--HHHHHHH
Confidence 6888876543 223344566789887654 34333 2468999987542 111 1 1223344
Q ss_pred HHHHcCCcEEEEchH
Q 030035 66 EFVKMGKPVWGTCAG 80 (184)
Q Consensus 66 ~~~~~g~PvlGIC~G 80 (184)
...+.++|++|.--.
T Consensus 206 ~~~~~~iPv~~~~~~ 220 (294)
T PF04392_consen 206 LANEAKIPVFGSSDF 220 (294)
T ss_dssp HCCCTT--EEESSHH
T ss_pred HHHhcCCCEEECCHH
Confidence 444568999986643
No 363
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=28.65 E-value=1e+02 Score=22.09 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=24.6
Q ss_pred ecCCCHHHHHHH----HHHCCCeEEEEcC----CCCCCCCCEEEEcC
Q 030035 7 ALQGSFNEHIAA----LKRLGVKGVEIRK----PDQLQNVSSLIIPG 45 (184)
Q Consensus 7 ~~qG~~~~~~~~----L~~~G~~v~~v~~----~~~l~~~DglIipG 45 (184)
+..||-..+.++ ++..|+++...+- ..++.++|.||+..
T Consensus 7 S~tGnT~~~A~~i~~~~~~~g~~v~~~~~~~~~~~~l~~~d~iilgs 53 (140)
T TIGR01753 7 SMTGNTEEMANIIAEGLKEAGAEVDLLEVADADAEDLLSYDAVLLGC 53 (140)
T ss_pred CCCcHHHHHHHHHHHHHHhcCCeEEEEEcccCCHHHHhcCCEEEEEc
Confidence 346776655544 4556877776642 23567899998854
No 364
>PF01812 5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-ligase family; InterPro: IPR002698 5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase 6.3.3.2 from EC catalyses the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+ []. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin [].; GO: 0005524 ATP binding, 0030272 5-formyltetrahydrofolate cyclo-ligase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 1WKC_A 1SBQ_A 1U3G_A 1U3F_B 1YDM_B 1SOU_A 2JCB_B 3HY6_A 3HY4_A 3HXT_A ....
Probab=28.58 E-value=13 Score=29.10 Aligned_cols=49 Identities=10% Similarity=0.120 Sum_probs=24.9
Q ss_pred CCCEEEEcC-CchhHHHHHHhcCChHHHHHHHHHc---CCcEEEEchHHHHHH
Q 030035 37 NVSSLIIPG-GESTTMARLAEYHNLFPALREFVKM---GKPVWGTCAGLIFLA 85 (184)
Q Consensus 37 ~~DglIipG-G~~~~~~~l~~~~~l~~~l~~~~~~---g~PvlGIC~G~QlLa 85 (184)
..|.+|+|| +++..-.+|-.-.|+.+..-..... ..+.+|+|.-.|++.
T Consensus 117 ~idlvlVP~lafd~~G~RLG~GgGyYDR~L~~~~~~~~~~~~igl~~~~q~~~ 169 (186)
T PF01812_consen 117 EIDLVLVPGLAFDRNGNRLGYGGGYYDRFLARLPPGRKKPLKIGLAFDFQIVD 169 (186)
T ss_dssp G-SEEEEE-SEEETTSBEE-SSSTHHHHHHHHHTS-SS--EEEEEE-GGGEES
T ss_pred cCCEEEeCcEEECCCCCeEecCCCHHHhHHHhhhcccCCCeEEEEeehhheeC
Confidence 689999999 5543211222222444433333332 568999999998875
No 365
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=28.50 E-value=36 Score=22.11 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=13.5
Q ss_pred cCCcEEEEchHHHHHHHhhh
Q 030035 70 MGKPVWGTCAGLIFLANKAV 89 (184)
Q Consensus 70 ~g~PvlGIC~G~QlLa~~~~ 89 (184)
+++-+.|+|+| ||+.+.
T Consensus 9 ~~~~i~GVcaG---lA~~~g 25 (61)
T PF04024_consen 9 DDRVIAGVCAG---LAEYFG 25 (61)
T ss_pred CCCEEeeeHHH---HHHHHC
Confidence 47899999999 666653
No 366
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=28.43 E-value=2.1e+02 Score=22.65 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=38.0
Q ss_pred HHHHHHHHHHCCCeEEEEc----------CC---CCCCCCCEEEEcC-CchhHH-HHHHhcCChHHHHHHHHHcCCcEEE
Q 030035 12 FNEHIAALKRLGVKGVEIR----------KP---DQLQNVSSLIIPG-GESTTM-ARLAEYHNLFPALREFVKMGKPVWG 76 (184)
Q Consensus 12 ~~~~~~~L~~~G~~v~~v~----------~~---~~l~~~DglIipG-G~~~~~-~~l~~~~~l~~~l~~~~~~g~PvlG 76 (184)
+..+...|.+.+.++..+. +. ++|.+||.|||.. +..+.+ ..... ...+.|++++++|.-++
T Consensus 29 v~~l~~~l~~~~~~~~~~p~~~~~~~fP~~~lf~~~L~~yD~vIl~dv~~~~ll~~~~~~--~~~~~l~~yV~~GGgLl- 105 (177)
T PF07090_consen 29 VDLLHFALLRPGIEVDYIPAHEALIAFPTTLLFDEELNRYDVVILSDVPANSLLKSRRSP--NQLELLADYVRDGGGLL- 105 (177)
T ss_dssp SHHHHHHHHHTT-EEEEEEHHHHHHH--SSC--SHHHCT-SEEEEES--HHHHHT----H--HHHHHHHHHHHTT-EEE-
T ss_pred hHHHHHHHhcCCccccccccchhhhhCCCchhhhhHHhcCCEEEEeCCCchhcccccCCH--HHHHHHHHHHHhCCEEE-
Confidence 4556678888898887663 12 3578999999987 332221 00011 25778999998876433
Q ss_pred EchHHH
Q 030035 77 TCAGLI 82 (184)
Q Consensus 77 IC~G~Q 82 (184)
+..|..
T Consensus 106 migG~~ 111 (177)
T PF07090_consen 106 MIGGPR 111 (177)
T ss_dssp EE-STT
T ss_pred EEeChh
Confidence 334443
No 367
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.33 E-value=2.7e+02 Score=21.96 Aligned_cols=57 Identities=16% Similarity=0.102 Sum_probs=31.4
Q ss_pred HHHHHHHCCCeEEEEcCCCC----------C--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEE
Q 030035 15 HIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (184)
Q Consensus 15 ~~~~L~~~G~~v~~v~~~~~----------l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGI 77 (184)
+.+++++.|+++.+.....+ + ..+||+|+.+....... ...+.++++.+.|.|+.-+
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~------~~~~~i~~~~~~~ipvV~i 89 (273)
T cd06292 21 IEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSLHADTH------ADHSHYERLAERGLPVVLV 89 (273)
T ss_pred HHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCCCCccc------chhHHHHHHHhCCCCEEEE
Confidence 34556778998877643211 1 36899999654221100 1223345555567777655
No 368
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=28.26 E-value=2.7e+02 Score=21.18 Aligned_cols=69 Identities=17% Similarity=0.145 Sum_probs=41.1
Q ss_pred EEEEEecCCCHH---HHHHHHHHCCCeEEEEcCC--CCCCCCCEEEEcC--CchhHHHHHHhcCChHHHHHHHHHcCCcE
Q 030035 2 VVGVLALQGSFN---EHIAALKRLGVKGVEIRKP--DQLQNVSSLIIPG--GESTTMARLAEYHNLFPALREFVKMGKPV 74 (184)
Q Consensus 2 ~IgVl~~qG~~~---~~~~~L~~~G~~v~~v~~~--~~l~~~DglIipG--G~~~~~~~l~~~~~l~~~l~~~~~~g~Pv 74 (184)
||-+....++.. .....|.+.|..+....+. ..+..-|.+|+-. |+... ..+.++.+.+.|.|+
T Consensus 32 ~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~Dv~I~iS~sG~t~~---------~i~~~~~ak~~g~~i 102 (179)
T TIGR03127 32 RIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGETTTPSIKKGDLLIAISGSGETES---------LVTVAKKAKEIGATV 102 (179)
T ss_pred EEEEEecCHHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCCCCEEEEEeCCCCcHH---------HHHHHHHHHHCCCeE
Confidence 455555444332 2335577788888777543 2345567666643 33322 355566666789999
Q ss_pred EEEch
Q 030035 75 WGTCA 79 (184)
Q Consensus 75 lGIC~ 79 (184)
++|+.
T Consensus 103 i~IT~ 107 (179)
T TIGR03127 103 AAITT 107 (179)
T ss_pred EEEEC
Confidence 99986
No 369
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=28.19 E-value=3.2e+02 Score=22.73 Aligned_cols=29 Identities=31% Similarity=0.555 Sum_probs=18.4
Q ss_pred CEEEEEecCCCH-HHHHHHHHHCC--CeEEEE
Q 030035 1 MVVGVLALQGSF-NEHIAALKRLG--VKGVEI 29 (184)
Q Consensus 1 m~IgVl~~qG~~-~~~~~~L~~~G--~~v~~v 29 (184)
|||||+...+-. ..|..++++.+ ++++-+
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav 35 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAV 35 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEE
Confidence 578988765333 34778888876 355544
No 370
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=28.13 E-value=1.5e+02 Score=22.59 Aligned_cols=44 Identities=23% Similarity=0.385 Sum_probs=26.0
Q ss_pred EEEEEe--cCCCHHHHHHHHHH-CC---CeEEEEcCC--CCCCCCCEEEEcC
Q 030035 2 VVGVLA--LQGSFNEHIAALKR-LG---VKGVEIRKP--DQLQNVSSLIIPG 45 (184)
Q Consensus 2 ~IgVl~--~qG~~~~~~~~L~~-~G---~~v~~v~~~--~~l~~~DglIipG 45 (184)
||+|+. ..||-..+.+.+.+ ++ +++.-+... .++.++|.||+.-
T Consensus 1 ~i~IiY~S~tGnTe~vA~~Ia~~l~~~~~~i~~~~~~~~~~l~~~d~ii~gs 52 (167)
T TIGR01752 1 KIGIFYGTDTGNTEGIAEKIQKELGEDDVDVFNIAKASKEDLNAYDKLILGT 52 (167)
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCCCceEEEEcccCCHhHHhhCCEEEEEe
Confidence 456654 46777777776654 33 333333332 3577899988854
No 371
>PRK11579 putative oxidoreductase; Provisional
Probab=28.01 E-value=3.8e+02 Score=22.82 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=17.9
Q ss_pred CEEEEEecCCCHHH--HHHHHHHC-CCeEEEE
Q 030035 1 MVVGVLALQGSFNE--HIAALKRL-GVKGVEI 29 (184)
Q Consensus 1 m~IgVl~~qG~~~~--~~~~L~~~-G~~v~~v 29 (184)
|||||+.. |.+.. |...+++. +++++-+
T Consensus 5 irvgiiG~-G~i~~~~~~~~~~~~~~~~l~av 35 (346)
T PRK11579 5 IRVGLIGY-GYASKTFHAPLIAGTPGLELAAV 35 (346)
T ss_pred ceEEEECC-CHHHHHHHHHHHhhCCCCEEEEE
Confidence 48999876 55543 56666654 5666644
No 372
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=27.98 E-value=2.1e+02 Score=21.48 Aligned_cols=57 Identities=9% Similarity=0.105 Sum_probs=33.2
Q ss_pred ecCCCHHH-----HHHHHHHCCCeEEEEc---CCCCC------CCCCEEEEcCCchhHHHHHHhcCChHHHHHH
Q 030035 7 ALQGSFNE-----HIAALKRLGVKGVEIR---KPDQL------QNVSSLIIPGGESTTMARLAEYHNLFPALRE 66 (184)
Q Consensus 7 ~~qG~~~~-----~~~~L~~~G~~v~~v~---~~~~l------~~~DglIipGG~~~~~~~l~~~~~l~~~l~~ 66 (184)
...|+.++ +..+|+..|++++..- +++++ .++|.|-++.=..+.+..+.+ +.+.|++
T Consensus 6 tv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~---~~~~l~~ 76 (128)
T cd02072 6 VIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLYGHGEIDCKG---LREKCDE 76 (128)
T ss_pred EeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccCCHHHHHH---HHHHHHH
Confidence 34566655 3467899999998763 22222 478888887633333333332 4555554
No 373
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=27.97 E-value=3e+02 Score=21.60 Aligned_cols=31 Identities=19% Similarity=0.166 Sum_probs=20.2
Q ss_pred HHHHHHCCCeEEEEcCC--CC---------C--CCCCEEEEcCC
Q 030035 16 IAALKRLGVKGVEIRKP--DQ---------L--QNVSSLIIPGG 46 (184)
Q Consensus 16 ~~~L~~~G~~v~~v~~~--~~---------l--~~~DglIipGG 46 (184)
.+++++.|+++.+.... .+ + ..+||+|+...
T Consensus 22 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (270)
T cd01545 22 LDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPP 65 (270)
T ss_pred HHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCC
Confidence 35577789988776422 11 2 36899998754
No 374
>PRK07308 flavodoxin; Validated
Probab=27.96 E-value=2.2e+02 Score=20.95 Aligned_cols=42 Identities=14% Similarity=0.210 Sum_probs=26.4
Q ss_pred EEEEEe--cCCCHHHHHHH----HHHCCCeEEEEcC----CCCCCCCCEEEE
Q 030035 2 VVGVLA--LQGSFNEHIAA----LKRLGVKGVEIRK----PDQLQNVSSLII 43 (184)
Q Consensus 2 ~IgVl~--~qG~~~~~~~~----L~~~G~~v~~v~~----~~~l~~~DglIi 43 (184)
||.|+. ..||-..+.+. |++.|.++.+... ..++.++|.+|+
T Consensus 3 ~~~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~~~~~l~~~d~vi~ 54 (146)
T PRK07308 3 LAKIVYASMTGNTEEIADIVADKLRELGHDVDVDECTTVDASDFEDADIAIV 54 (146)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhCCCceEEEecccCCHhHhccCCEEEE
Confidence 466653 46776665544 5556777665532 234678899988
No 375
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=27.39 E-value=1.2e+02 Score=25.52 Aligned_cols=62 Identities=27% Similarity=0.386 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHCCCeEEEEcC----------CCCC----------CCCCEEEEcCC---chhHHHHHHhcCChHHHHH
Q 030035 9 QGSFNEHIAALKRLGVKGVEIRK----------PDQL----------QNVSSLIIPGG---ESTTMARLAEYHNLFPALR 65 (184)
Q Consensus 9 qG~~~~~~~~L~~~G~~v~~v~~----------~~~l----------~~~DglIipGG---~~~~~~~l~~~~~l~~~l~ 65 (184)
.++..+..+.-+++|.++.++.+ ..++ ..+|+||++|. ..+.++.+ ..+|
T Consensus 124 ~~~a~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l-------~~vr 196 (254)
T PF03437_consen 124 EGCAGELLRYRKRLGADVKILADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKL-------KRVR 196 (254)
T ss_pred cccHHHHHHHHHHcCCCeEEEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHH-------HHHH
Confidence 34667777777778877655421 0111 25899999993 44443332 3344
Q ss_pred HHHHcCCcEEEEchH
Q 030035 66 EFVKMGKPVWGTCAG 80 (184)
Q Consensus 66 ~~~~~g~PvlGIC~G 80 (184)
+.. +.||+ +..|
T Consensus 197 ~~~--~~PVl-vGSG 208 (254)
T PF03437_consen 197 EAV--PVPVL-VGSG 208 (254)
T ss_pred hcC--CCCEE-EecC
Confidence 443 38887 4444
No 376
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=27.32 E-value=2.6e+02 Score=23.92 Aligned_cols=14 Identities=14% Similarity=0.423 Sum_probs=11.6
Q ss_pred CCCCCCEEEEcCCc
Q 030035 34 QLQNVSSLIIPGGE 47 (184)
Q Consensus 34 ~l~~~DglIipGG~ 47 (184)
++.++|.+|++.|.
T Consensus 70 ~~~~adivIitag~ 83 (315)
T PRK00066 70 DCKDADLVVITAGA 83 (315)
T ss_pred HhCCCCEEEEecCC
Confidence 46789999998884
No 377
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.81 E-value=3.2e+02 Score=24.11 Aligned_cols=29 Identities=17% Similarity=0.020 Sum_probs=22.4
Q ss_pred EEEEEecCCCHHHHHHHHHHCCCeEEEEc
Q 030035 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR 30 (184)
Q Consensus 2 ~IgVl~~qG~~~~~~~~L~~~G~~v~~v~ 30 (184)
+|.|+.+-|.=.+..+.|++.|.++....
T Consensus 8 ~i~v~G~G~sG~s~~~~l~~~G~~v~~~D 36 (438)
T PRK03806 8 KVVIIGLGLTGLSCVDFFLARGVTPRVID 36 (438)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCeEEEEc
Confidence 58888888777776788889998776654
No 378
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=26.54 E-value=2.8e+02 Score=22.82 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=26.1
Q ss_pred EEEEEec--CCCH-HHH----HHHHHHCCCeEEEEcCCCC----------C--CCCCEEEEcCC
Q 030035 2 VVGVLAL--QGSF-NEH----IAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGG 46 (184)
Q Consensus 2 ~IgVl~~--qG~~-~~~----~~~L~~~G~~v~~v~~~~~----------l--~~~DglIipGG 46 (184)
.|||+.- ...| .++ .+.+++.|+++.+....++ + ..+||+|+.+.
T Consensus 63 ~Igvv~~~~~~~~~~~l~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 126 (328)
T PRK11303 63 SIGLIIPDLENTSYARIAKYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTS 126 (328)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4777652 2223 222 3456678998877642211 1 36899999764
No 379
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.39 E-value=3.2e+02 Score=21.46 Aligned_cols=31 Identities=10% Similarity=0.082 Sum_probs=19.8
Q ss_pred HHHHHHCCCeEEEEcCCCC------------CCCCCEEEEcCC
Q 030035 16 IAALKRLGVKGVEIRKPDQ------------LQNVSSLIIPGG 46 (184)
Q Consensus 16 ~~~L~~~G~~v~~v~~~~~------------l~~~DglIipGG 46 (184)
.+.+++.|+++.+.....+ -.++|++|+.+.
T Consensus 22 ~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 64 (267)
T cd06322 22 KEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPV 64 (267)
T ss_pred HHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3456778988877643211 137899999653
No 380
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=26.21 E-value=3.1e+02 Score=21.18 Aligned_cols=73 Identities=25% Similarity=0.316 Sum_probs=38.0
Q ss_pred CEEEEEecCCCHH-------HHHHHHHHCCC---eEEEEcCC---------CCC---CCCCEEEEcC----CchhHHHHH
Q 030035 1 MVVGVLALQGSFN-------EHIAALKRLGV---KGVEIRKP---------DQL---QNVSSLIIPG----GESTTMARL 54 (184)
Q Consensus 1 m~IgVl~~qG~~~-------~~~~~L~~~G~---~v~~v~~~---------~~l---~~~DglIipG----G~~~~~~~l 54 (184)
.||+|+.-.-|-. ...+.|++.|+ ++.+++-| +.+ .++|++|--| |+..-++.+
T Consensus 13 ~riaIV~s~~n~~i~~~l~~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~~~~~DavIalG~VIrG~T~H~e~V 92 (154)
T PRK00061 13 LRIGIVVARFNDFITDALLEGALDALKRHGVSEENIDVVRVPGAFEIPLAAKKLAESGKYDAVIALGAVIRGETPHFDYV 92 (154)
T ss_pred CEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCCHHHHHHHHHHHHHcCCCCEEEEEeeEEcCCCchHHHH
Confidence 3788877544321 12345677783 34444322 111 4699999888 443334444
Q ss_pred HhcCChHHH-HHHHHHcCCcEE
Q 030035 55 AEYHNLFPA-LREFVKMGKPVW 75 (184)
Q Consensus 55 ~~~~~l~~~-l~~~~~~g~Pvl 75 (184)
.+. ...- .+-.++.++||.
T Consensus 93 ~~~--v~~gl~~v~l~~~~PV~ 112 (154)
T PRK00061 93 ANE--VAKGLADVSLETGVPVG 112 (154)
T ss_pred HHH--HHHHHHHHHhccCCCEE
Confidence 332 2332 333345788874
No 381
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=26.15 E-value=2.9e+02 Score=20.87 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=21.0
Q ss_pred HHHHH--CCCeEEEEcCCCC----------C--CCCCEEEEcCCch
Q 030035 17 AALKR--LGVKGVEIRKPDQ----------L--QNVSSLIIPGGES 48 (184)
Q Consensus 17 ~~L~~--~G~~v~~v~~~~~----------l--~~~DglIipGG~~ 48 (184)
+++++ .++++.++....+ + ..+|++|+++...
T Consensus 24 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~ 69 (269)
T cd01391 24 LAAEEIGRGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPSSS 69 (269)
T ss_pred HHHHHhCCceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEecCCCH
Confidence 45677 6777777753211 1 3689999998653
No 382
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=26.07 E-value=3.1e+02 Score=21.66 Aligned_cols=57 Identities=18% Similarity=0.130 Sum_probs=30.8
Q ss_pred HHHHHHHCCCeEEEEcCCCC----------C--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEE
Q 030035 15 HIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (184)
Q Consensus 15 ~~~~L~~~G~~v~~v~~~~~----------l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGI 77 (184)
..+.+++.|.++.+.....+ + ..+|++|+-++.+.... .-.+.++++.+.++|+.-+
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~------~~~~~~~~~~~~~ipvV~~ 89 (273)
T cd01541 21 IESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPN------PNIDLYLKLEKLGIPYVFI 89 (273)
T ss_pred HHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecccccccc------ccHHHHHHHHHCCCCEEEE
Confidence 34567778999877643211 1 37899998654322100 0113344444557776543
No 383
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=25.80 E-value=1.1e+02 Score=22.10 Aligned_cols=33 Identities=27% Similarity=0.468 Sum_probs=22.3
Q ss_pred CEEEEEe-cCCCHHHHHHHHHHCCCeEEEEcCCCCCCCCCEEEEcCC
Q 030035 1 MVVGVLA-LQGSFNEHIAALKRLGVKGVEIRKPDQLQNVSSLIIPGG 46 (184)
Q Consensus 1 m~IgVl~-~qG~~~~~~~~L~~~G~~v~~v~~~~~l~~~DglIipGG 46 (184)
|||++++ +.++...+.+.++.. .+.|.+|+.|-
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~-------------~~~d~vi~~GD 34 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYI-------------NEPDFVIILGD 34 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHH-------------TTESEEEEES-
T ss_pred CEEEEEeCCCCChhHHHHHHHHh-------------cCCCEEEECCC
Confidence 8999987 467777655666655 23788888884
No 384
>KOG3212 consensus Uncharacterized conserved protein related to IojAP [Function unknown]
Probab=25.68 E-value=2.8e+02 Score=22.51 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=29.6
Q ss_pred HHHHHHHHHHCCCe-EEEEcCCCCCCCCCEEEEcCCchhH
Q 030035 12 FNEHIAALKRLGVK-GVEIRKPDQLQNVSSLIIPGGESTT 50 (184)
Q Consensus 12 ~~~~~~~L~~~G~~-v~~v~~~~~l~~~DglIipGG~~~~ 50 (184)
+.+++..|++..++ +.++..++++.-+|-.||.-|.++-
T Consensus 71 ve~vv~lLrdenadDVfVi~vpeem~y~dh~VIcSgrs~r 110 (208)
T KOG3212|consen 71 VEEVVKLLRDENADDVFVIPVPEEMFYADHTVICSGRSDR 110 (208)
T ss_pred HHHHHHHHHhcccCceEEEeccccceeeeeEEEEecCchH
Confidence 45567888887774 5566777788889999998887764
No 385
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=25.65 E-value=2.6e+02 Score=22.79 Aligned_cols=80 Identities=18% Similarity=0.137 Sum_probs=47.2
Q ss_pred CEEEEEecCCCHHHHHHHHHHCCCeEEEEc-----C-------CCCCCCCCEEEEcCCchhH--HHHHHhcCChHHHHHH
Q 030035 1 MVVGVLALQGSFNEHIAALKRLGVKGVEIR-----K-------PDQLQNVSSLIIPGGESTT--MARLAEYHNLFPALRE 66 (184)
Q Consensus 1 m~IgVl~~qG~~~~~~~~L~~~G~~v~~v~-----~-------~~~l~~~DglIipGG~~~~--~~~l~~~~~l~~~l~~ 66 (184)
|||.|.--...-.++...|+..|.++..+. . ..++..+|.|+++-..... .+.+... +..
T Consensus 2 ~~vlvtR~~~~~~~~~~~l~~~G~~~~~~P~i~~~~~~~l~~~l~~l~~~d~vvfTS~~av~~~~~~l~~~-~~~----- 75 (248)
T COG1587 2 MRVLVTRPREQAEELAALLRKAGAEPLELPLIEIEPLPDLEVALEDLDSADWVVFTSPNAVRFFFEALKEQ-GLD----- 75 (248)
T ss_pred cEEEEeCchhhhHHHHHHHHhCCCcceeecceeeecchhHHHHHhccccCCEEEEECHHHHHHHHHHHHhh-ccc-----
Confidence 677777666667778899999999776553 1 1234568999998654322 1121111 100
Q ss_pred HHHcCCcEEEEchHHHHHHHh
Q 030035 67 FVKMGKPVWGTCAGLIFLANK 87 (184)
Q Consensus 67 ~~~~g~PvlGIC~G~QlLa~~ 87 (184)
.-.++++++|.-.-.-..+.
T Consensus 76 -~~~~~~i~aVG~~Ta~~l~~ 95 (248)
T COG1587 76 -ALKNKKIAAVGEKTAEALRK 95 (248)
T ss_pred -ccccCeEEEEcHHHHHHHHH
Confidence 12367888887654444443
No 386
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.35 E-value=2.9e+02 Score=24.47 Aligned_cols=28 Identities=18% Similarity=0.048 Sum_probs=19.6
Q ss_pred EEEEecCCCHHHHHHHHHHCCCeEEEEc
Q 030035 3 VGVLALQGSFNEHIAALKRLGVKGVEIR 30 (184)
Q Consensus 3 IgVl~~qG~~~~~~~~L~~~G~~v~~v~ 30 (184)
|.|+.+.|.=.+..+.|.+.|++|....
T Consensus 9 ~~v~G~G~sG~s~a~~L~~~G~~v~~~D 36 (448)
T PRK03803 9 HIVVGLGKTGLSVVRFLARQGIPFAVMD 36 (448)
T ss_pred EEEEeecHhHHHHHHHHHhCCCeEEEEe
Confidence 6666666665667788888887766553
No 387
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=25.17 E-value=1e+02 Score=23.67 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=15.8
Q ss_pred CCCEEEE-cCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEE
Q 030035 37 NVSSLII-PGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (184)
Q Consensus 37 ~~DglIi-pGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGI 77 (184)
..|++|+ |||.+|- +.+.+....+||++..
T Consensus 91 ~sda~IvlpGG~GTL-----------~E~~~a~~~~kpv~~l 121 (159)
T TIGR00725 91 SADVVVSVGGGYGTA-----------IEILGAYALGGPVVVL 121 (159)
T ss_pred HCCEEEEcCCchhHH-----------HHHHHHHHcCCCEEEE
Confidence 3566544 7666553 2222333468997543
No 388
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=24.83 E-value=3e+02 Score=23.97 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=17.9
Q ss_pred CEEEEEecCCCHH-HHHHHHHHCC
Q 030035 1 MVVGVLALQGSFN-EHIAALKRLG 23 (184)
Q Consensus 1 m~IgVl~~qG~~~-~~~~~L~~~G 23 (184)
|||+|+.-.|... ++++.|.+.+
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~~ 31 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDRD 31 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhCC
Confidence 5899999889876 4678887754
No 389
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=24.81 E-value=84 Score=25.42 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=21.6
Q ss_pred CEEEEEe-cCCCHHHHHHHHHHCCCe
Q 030035 1 MVVGVLA-LQGSFNEHIAALKRLGVK 25 (184)
Q Consensus 1 m~IgVl~-~qG~~~~~~~~L~~~G~~ 25 (184)
|||+|++ ++|++..+.+.|++.+..
T Consensus 1 ~~i~vigDIHG~~~~L~~ll~~~~~~ 26 (234)
T cd07423 1 GPFDIIGDVHGCYDELEELLEKLGYR 26 (234)
T ss_pred CCeEEEEECCCCHHHHHHHHHHcCCc
Confidence 7899886 799999999999998753
No 390
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=24.73 E-value=1.2e+02 Score=28.72 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=23.5
Q ss_pred HHHHHHHCCCeEEEE---cCC-C--------CCCCCCEEEEcCCch
Q 030035 15 HIAALKRLGVKGVEI---RKP-D--------QLQNVSSLIIPGGES 48 (184)
Q Consensus 15 ~~~~L~~~G~~v~~v---~~~-~--------~l~~~DglIipGG~~ 48 (184)
+...|++.|+++... .+. + .++++|.||.+||.+
T Consensus 399 L~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIIttGG~s 444 (597)
T PRK14491 399 IKAMAKKLGCEVIDLGIIEDSEAALEATLEQAAAQADVVISSGGVS 444 (597)
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCcc
Confidence 557789999987644 322 1 135799999999854
No 391
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=24.49 E-value=3.7e+02 Score=21.47 Aligned_cols=53 Identities=21% Similarity=0.137 Sum_probs=30.0
Q ss_pred HHHHHHCCCeEEEEcCCC---------CC--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEE
Q 030035 16 IAALKRLGVKGVEIRKPD---------QL--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGT 77 (184)
Q Consensus 16 ~~~L~~~G~~v~~v~~~~---------~l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGI 77 (184)
.+++++.|+++.+....+ .+ .++|+||+.+..... ..+.++.+.+.++|+..+
T Consensus 22 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~---------~~~~~~~~~~~~iPvV~~ 85 (289)
T cd01540 22 KKAAKEKGFTVVKIDVPDGEKVLSAIDNLGAQGAKGFVICVPDVKL---------GPAIVAKAKAYNMKVVAV 85 (289)
T ss_pred HHHHHHcCCEEEEccCCCHHHHHHHHHHHHHcCCCEEEEccCchhh---------hHHHHHHHHhCCCeEEEe
Confidence 456777899888764321 01 368999997642211 112344444557776654
No 392
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=24.44 E-value=4.4e+02 Score=22.97 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=28.4
Q ss_pred CEEEEEecCCCHHH-HHHHHHHC-CCeEEEE--cCC-------------CC----CCCCCEEEEcCC
Q 030035 1 MVVGVLALQGSFNE-HIAALKRL-GVKGVEI--RKP-------------DQ----LQNVSSLIIPGG 46 (184)
Q Consensus 1 m~IgVl~~qG~~~~-~~~~L~~~-G~~v~~v--~~~-------------~~----l~~~DglIipGG 46 (184)
+||||+.+ |++.. +.+++.+. +++++-+ +++ .+ +.+.|.+++.++
T Consensus 4 IRVgIVG~-GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctP 69 (324)
T TIGR01921 4 IRAAIVGY-GNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMG 69 (324)
T ss_pred cEEEEEee-cHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCC
Confidence 48999887 77766 55677654 6666543 111 11 346899999764
No 393
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=24.17 E-value=3.3e+02 Score=20.77 Aligned_cols=69 Identities=19% Similarity=0.109 Sum_probs=41.8
Q ss_pred EEEEEecCCCHH--H-HHHHHHHCCCeEEEEcCC--CCCCCCCEEEEcC--CchhHHHHHHhcCChHHHHHHHHHcCCcE
Q 030035 2 VVGVLALQGSFN--E-HIAALKRLGVKGVEIRKP--DQLQNVSSLIIPG--GESTTMARLAEYHNLFPALREFVKMGKPV 74 (184)
Q Consensus 2 ~IgVl~~qG~~~--~-~~~~L~~~G~~v~~v~~~--~~l~~~DglIipG--G~~~~~~~l~~~~~l~~~l~~~~~~g~Pv 74 (184)
||-++...++.. + ....|.+.|..+....+. ..+..-|.+|+-. |+... ..+.++.+.+.|.|+
T Consensus 35 ~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~~---------~i~~~~~ak~~g~~i 105 (179)
T cd05005 35 RIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGETTTPAIGPGDLLIAISGSGETSS---------VVNAAEKAKKAGAKV 105 (179)
T ss_pred eEEEEecChhHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCEEEEEcCCCCcHH---------HHHHHHHHHHCCCeE
Confidence 566666554432 2 334567788888777543 2244567776643 44332 345566666789999
Q ss_pred EEEch
Q 030035 75 WGTCA 79 (184)
Q Consensus 75 lGIC~ 79 (184)
++|+.
T Consensus 106 I~IT~ 110 (179)
T cd05005 106 VLITS 110 (179)
T ss_pred EEEEC
Confidence 99985
No 394
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=24.09 E-value=2.6e+02 Score=22.06 Aligned_cols=63 Identities=21% Similarity=0.347 Sum_probs=38.6
Q ss_pred EEEEEecCCCHHHH-----HHHHHHCCCeEEEEcC---CCCC------CCCCEEEEcCCchhHHHHHHhcCChHHHHHHH
Q 030035 2 VVGVLALQGSFNEH-----IAALKRLGVKGVEIRK---PDQL------QNVSSLIIPGGESTTMARLAEYHNLFPALREF 67 (184)
Q Consensus 2 ~IgVl~~qG~~~~~-----~~~L~~~G~~v~~v~~---~~~l------~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~ 67 (184)
||-+-...|+.+++ ...|+..|.+++..-. .+++ .++|.|-++......+..+.+ +.+.||+.
T Consensus 84 ~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~---~i~~lr~~ 160 (201)
T cd02070 84 KVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKE---VIEALKEA 160 (201)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHH---HHHHHHHC
Confidence 45555678887773 3568899999987632 2222 478999888754444434332 45555543
No 395
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=24.02 E-value=86 Score=26.63 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=23.9
Q ss_pred CCCCEEEEcCC--chhHHHHHHhcCChHHHHHHHHHcCCcEE-EEch
Q 030035 36 QNVSSLIIPGG--ESTTMARLAEYHNLFPALREFVKMGKPVW-GTCA 79 (184)
Q Consensus 36 ~~~DglIipGG--~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl-GIC~ 79 (184)
..+|||++.|+ +...+..-.+ ..+.+...+......|++ |++.
T Consensus 40 ~Gv~Gi~~~GstGE~~~Lt~eEr-~~~~~~~~~~~~~~~pvi~gv~~ 85 (303)
T PRK03620 40 YGAAALFAAGGTGEFFSLTPDEY-SQVVRAAVETTAGRVPVIAGAGG 85 (303)
T ss_pred cCCCEEEECcCCcCcccCCHHHH-HHHHHHHHHHhCCCCcEEEecCC
Confidence 36899999995 4322211111 124555555555567876 6653
No 396
>PRK09004 FMN-binding protein MioC; Provisional
Probab=23.94 E-value=1.7e+02 Score=22.04 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=27.1
Q ss_pred EEEEEe--cCCCHHHHH----HHHHHCCCeEEEEc--CCCCCCCCCEEEE
Q 030035 2 VVGVLA--LQGSFNEHI----AALKRLGVKGVEIR--KPDQLQNVSSLII 43 (184)
Q Consensus 2 ~IgVl~--~qG~~~~~~----~~L~~~G~~v~~v~--~~~~l~~~DglIi 43 (184)
||.|+. -.||-..+. +.+++.|.++.++. ..+++.+.|.+|+
T Consensus 3 ~i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~~~~~~l~~~~~li~ 52 (146)
T PRK09004 3 DITLISGSTLGGAEYVADHLAEKLEEAGFSTETLHGPLLDDLSASGLWLI 52 (146)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHHcCCceEEeccCCHHHhccCCeEEE
Confidence 677774 356655554 44566788877664 3455777887766
No 397
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=23.90 E-value=3.2e+02 Score=22.03 Aligned_cols=62 Identities=8% Similarity=0.193 Sum_probs=38.9
Q ss_pred EEEEEecCCCHHHH-----HHHHHHCCCeEEEEcC---CCCC------CCCCEEEEcCCchhHHHHHHhcCChHHHHHH
Q 030035 2 VVGVLALQGSFNEH-----IAALKRLGVKGVEIRK---PDQL------QNVSSLIIPGGESTTMARLAEYHNLFPALRE 66 (184)
Q Consensus 2 ~IgVl~~qG~~~~~-----~~~L~~~G~~v~~v~~---~~~l------~~~DglIipGG~~~~~~~l~~~~~l~~~l~~ 66 (184)
||.+-...|+.+++ ...|+..|++++..-. ++++ .+.|.+-++....+.+..+.+ +.+.|++
T Consensus 90 ~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~~~~---~i~~L~~ 165 (213)
T cd02069 90 KIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGLSGLLVPSLDEMVE---VAEEMNR 165 (213)
T ss_pred eEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEccchhccHHHHHH---HHHHHHh
Confidence 56566678888773 3568889999998742 2222 378999888765544444332 3444543
No 398
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=23.62 E-value=3.9e+02 Score=23.33 Aligned_cols=67 Identities=16% Similarity=0.291 Sum_probs=38.1
Q ss_pred HHHHHHHHCCCeEEEEcCCCCCCCCCEE-EEcCCchhHHHHHHhcCChHHHHHHHH-HcCCcEEEEchHHHHHHH
Q 030035 14 EHIAALKRLGVKGVEIRKPDQLQNVSSL-IIPGGESTTMARLAEYHNLFPALREFV-KMGKPVWGTCAGLIFLAN 86 (184)
Q Consensus 14 ~~~~~L~~~G~~v~~v~~~~~l~~~Dgl-IipGG~~~~~~~l~~~~~l~~~l~~~~-~~g~PvlGIC~G~QlLa~ 86 (184)
..++.|+++|+++++..+ . .+-|. ..-.|..+....+.+. ..+.++... +.|.||+..|.+....-+
T Consensus 182 a~v~vL~~~G~~v~~~~~--~--~CCG~p~~~~G~~~~~~~~a~~--n~~~l~~~~~~~~~~iv~~c~sC~~~lk 250 (397)
T TIGR03379 182 DLVKVLNAMNIGVQLLEK--E--KCCGVPLIANGFPDKAKKQAQF--NVKQIEAMVDENGIPVISTSSTCSFTLR 250 (397)
T ss_pred HHHHHHHHCCcEEEeCCC--C--CccCccHHhCCCHHHHHHHHHH--HHHHHHHHHHhcCCeEEEcCCcHHHHHH
Confidence 355678899999876531 1 22222 2333543333333321 245555544 457899999998887654
No 399
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.23 E-value=3.8e+02 Score=21.17 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=20.8
Q ss_pred HHHHHHHCCCeEEEEcCCC----------CC--CCCCEEEEcCC
Q 030035 15 HIAALKRLGVKGVEIRKPD----------QL--QNVSSLIIPGG 46 (184)
Q Consensus 15 ~~~~L~~~G~~v~~v~~~~----------~l--~~~DglIipGG 46 (184)
+.+.+++.|.++.+..... .+ ..+||+|+-++
T Consensus 21 i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~ 64 (269)
T cd06281 21 AEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPG 64 (269)
T ss_pred HHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 3456778899987764321 11 36899998664
No 400
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=23.15 E-value=3.7e+02 Score=21.00 Aligned_cols=57 Identities=14% Similarity=0.247 Sum_probs=34.6
Q ss_pred HHHHHHHHHCCCeEEEEcCCCC----------C--CCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEEEEch
Q 030035 13 NEHIAALKRLGVKGVEIRKPDQ----------L--QNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVWGTCA 79 (184)
Q Consensus 13 ~~~~~~L~~~G~~v~~v~~~~~----------l--~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~ 79 (184)
..+.++|++.|++++..+..-| + .++|.++|-.|-++ +..++.+..+.|+-|.|+..
T Consensus 69 ~~l~~~l~~~Gf~pv~~kG~~Dv~laIDame~~~~~~iD~~vLvSgD~D----------F~~Lv~~lre~G~~V~v~g~ 137 (160)
T TIGR00288 69 DKLIEAVVNQGFEPIIVAGDVDVRMAVEAMELIYNPNIDAVALVTRDAD----------FLPVINKAKENGKETIVIGA 137 (160)
T ss_pred HHHHHHHHHCCceEEEecCcccHHHHHHHHHHhccCCCCEEEEEeccHh----------HHHHHHHHHHCCCEEEEEeC
Confidence 3455677778888776653221 2 56788888666443 22333344456999988873
No 401
>PLN02417 dihydrodipicolinate synthase
Probab=23.15 E-value=1e+02 Score=25.87 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=25.2
Q ss_pred CCCCEEEEcC--CchhHHHHHHhcCChHHHHHHHHHcCCcEEEEchH
Q 030035 36 QNVSSLIIPG--GESTTMARLAEYHNLFPALREFVKMGKPVWGTCAG 80 (184)
Q Consensus 36 ~~~DglIipG--G~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC~G 80 (184)
..+|||++.| |+...+..-.+ ..+.+...+......||+.-+..
T Consensus 34 ~Gv~Gi~~~GstGE~~~ls~~Er-~~~~~~~~~~~~~~~pvi~gv~~ 79 (280)
T PLN02417 34 NGAEGLIVGGTTGEGQLMSWDEH-IMLIGHTVNCFGGKIKVIGNTGS 79 (280)
T ss_pred cCCCEEEECccCcchhhCCHHHH-HHHHHHHHHHhCCCCcEEEECCC
Confidence 3689999999 44333321111 12455555555556788876654
No 402
>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin. The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.
Probab=23.06 E-value=22 Score=21.37 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=9.8
Q ss_pred EEEEchHHHHHHHh
Q 030035 74 VWGTCAGLIFLANK 87 (184)
Q Consensus 74 vlGIC~G~QlLa~~ 87 (184)
..|-|+|.|+|..+
T Consensus 32 tagacfgaqimvaa 45 (48)
T PF09075_consen 32 TAGACFGAQIMVAA 45 (48)
T ss_dssp S--TTTTTHHHHTT
T ss_pred ccccccchhhhhhc
Confidence 57889999998654
No 403
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=22.82 E-value=3.4e+02 Score=21.45 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=34.7
Q ss_pred EEEEEecCCCHHHH-----HHHHHHCCCeEEEEcC--C-CCC------CCCCEEEEcCCchhHHHHH
Q 030035 2 VVGVLALQGSFNEH-----IAALKRLGVKGVEIRK--P-DQL------QNVSSLIIPGGESTTMARL 54 (184)
Q Consensus 2 ~IgVl~~qG~~~~~-----~~~L~~~G~~v~~v~~--~-~~l------~~~DglIipGG~~~~~~~l 54 (184)
||-+-...|+.+++ ...|+..|++++..-. + +++ .++|.+-++-...+.+..+
T Consensus 86 ~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~ 152 (197)
T TIGR02370 86 KVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQ 152 (197)
T ss_pred eEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEccccccCHHHH
Confidence 45555678888773 3568889999998742 1 222 4789998887654444443
No 404
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=22.76 E-value=2.3e+02 Score=23.48 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=21.8
Q ss_pred CEEEEEecCCCHH-HHHHHHHHCCCeEEEEc
Q 030035 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEIR 30 (184)
Q Consensus 1 m~IgVl~~qG~~~-~~~~~L~~~G~~v~~v~ 30 (184)
|||+|+. -|... ++...|.+.|.++..+.
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~~g~~V~~~d 30 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRSLGHTVYGVS 30 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHHCCCEEEEEE
Confidence 8999987 47774 46688888888776653
No 405
>PRK05584 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=22.73 E-value=1.2e+02 Score=24.26 Aligned_cols=75 Identities=15% Similarity=0.226 Sum_probs=35.8
Q ss_pred CEEEEEe-cCCCHHHHHHHHHHCCCeEEEEcCC----CCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035 1 MVVGVLA-LQGSFNEHIAALKRLGVKGVEIRKP----DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (184)
Q Consensus 1 m~IgVl~-~qG~~~~~~~~L~~~G~~v~~v~~~----~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl 75 (184)
|||+|+. ++-.+..+.+.+.... ....... ..+.+.+.+++..|.+..-..+. ....|.++--+-.-..
T Consensus 1 ~~i~ii~A~~~E~~~l~~~~~~~~--~~~~~~~~~~~g~~~g~~v~v~~tG~G~~~aa~~----~~~li~~~~~~~ii~~ 74 (230)
T PRK05584 1 MKIGIIGAMEEEVTLLLDKLENAQ--TITLAGREFYTGTLHGHEVVLVLSGIGKVAAALT----ATILIEHFKVDAVINT 74 (230)
T ss_pred CeEEEEccCHHHHHHHHHHhhccc--eEecCCcEEEEEEECCEEEEEEECCcCHHHHHHH----HHHHHHhcCCCEEEEE
Confidence 8999975 4445555555555321 1111100 12345566666444433211111 1223433322346678
Q ss_pred EEchHH
Q 030035 76 GTCAGL 81 (184)
Q Consensus 76 GIC~G~ 81 (184)
|+|.|+
T Consensus 75 G~aG~l 80 (230)
T PRK05584 75 GVAGGL 80 (230)
T ss_pred EecCCC
Confidence 999997
No 406
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=22.64 E-value=4.6e+02 Score=23.29 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=18.8
Q ss_pred CEEEEEecCCCHHH-HHH-HHHHCCCe
Q 030035 1 MVVGVLALQGSFNE-HIA-ALKRLGVK 25 (184)
Q Consensus 1 m~IgVl~~qG~~~~-~~~-~L~~~G~~ 25 (184)
|+|||+.-.|.+.. +++ .|++..+.
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~ 28 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFD 28 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCC
Confidence 58999999998865 566 67776654
No 407
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=22.58 E-value=3.4e+02 Score=24.06 Aligned_cols=13 Identities=15% Similarity=0.194 Sum_probs=8.6
Q ss_pred CCCCCEEEEcCCc
Q 030035 35 LQNVSSLIIPGGE 47 (184)
Q Consensus 35 l~~~DglIipGG~ 47 (184)
+.++|.+|.+-|-
T Consensus 66 ~~~~d~vV~SpgI 78 (438)
T PRK04663 66 LLEADLVVTNPGI 78 (438)
T ss_pred hccCCEEEECCCC
Confidence 4467877776664
No 408
>PRK15029 arginine decarboxylase; Provisional
Probab=22.52 E-value=4e+02 Score=26.12 Aligned_cols=72 Identities=18% Similarity=0.189 Sum_probs=41.4
Q ss_pred CEEEEEecCCC---------HHHHHHHHHHCCCeEEEEcCCCC----C---CCCCEEEE----cCCchhHHHHHHhcCCh
Q 030035 1 MVVGVLALQGS---------FNEHIAALKRLGVKGVEIRKPDQ----L---QNVSSLII----PGGESTTMARLAEYHNL 60 (184)
Q Consensus 1 m~IgVl~~qG~---------~~~~~~~L~~~G~~v~~v~~~~~----l---~~~DglIi----pGG~~~~~~~l~~~~~l 60 (184)
|||.|+.-.-. ...+.+.|++.|+++..+.+.++ + ..+|.+|+ ||..+.. .+. .+
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~~~~DlVLLD~~LPd~dG~~--~~~---el 75 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNEAIDCLMFSYQMEHPDEHQ--NVR---QL 75 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCcEEEEECCCCCCccch--hHH---HH
Confidence 78666543332 33456789999999998876433 2 25898887 5543211 111 13
Q ss_pred HHHHHHHHHcCCcEEEEc
Q 030035 61 FPALREFVKMGKPVWGTC 78 (184)
Q Consensus 61 ~~~l~~~~~~g~PvlGIC 78 (184)
.+.||+. ..+.||+-+.
T Consensus 76 l~~IR~~-~~~iPIIlLT 92 (755)
T PRK15029 76 IGKLHER-QQNVPVFLLG 92 (755)
T ss_pred HHHHHhh-CCCCCEEEEE
Confidence 4445532 2367887665
No 409
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=22.29 E-value=1.6e+02 Score=22.42 Aligned_cols=31 Identities=26% Similarity=0.406 Sum_probs=20.4
Q ss_pred CCEEEEcCCchhHHHHHHhcCChHHHHHHHHHcCCcEE
Q 030035 38 VSSLIIPGGESTTMARLAEYHNLFPALREFVKMGKPVW 75 (184)
Q Consensus 38 ~DglIipGG~~~~~~~l~~~~~l~~~l~~~~~~g~Pvl 75 (184)
.++|.++||+ ...+ .+.+.++.+.+.|.+++
T Consensus 62 ~~gVt~SGGE-l~~~------~l~~ll~~lk~~Gl~i~ 92 (147)
T TIGR02826 62 ISCVLFLGGE-WNRE------ALLSLLKIFKEKGLKTC 92 (147)
T ss_pred CCEEEEechh-cCHH------HHHHHHHHHHHCCCCEE
Confidence 4799999999 3222 24556666656677764
No 410
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=22.00 E-value=4.7e+02 Score=22.35 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=19.0
Q ss_pred EEEEEecCCC------HHHHHHHHHHCCCeEEEE
Q 030035 2 VVGVLALQGS------FNEHIAALKRLGVKGVEI 29 (184)
Q Consensus 2 ~IgVl~~qG~------~~~~~~~L~~~G~~v~~v 29 (184)
+|+|++-.+. +..-++.|++.|.+++.-
T Consensus 3 ~I~viAPSs~~~~~~~~~~~i~~L~~~G~~v~~~ 36 (305)
T PRK11253 3 LFHLIAPSGYPIDQAAALRGVQRLTDAGHQVENV 36 (305)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHhCCCEEeec
Confidence 7999987651 233356688889987654
No 411
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=21.81 E-value=4.6e+02 Score=21.58 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=28.5
Q ss_pred EEEEEecCCC---HHH----HHHHHHHCCCeEEEEcCCCC---------C--CCCCEEEEcCC
Q 030035 2 VVGVLALQGS---FNE----HIAALKRLGVKGVEIRKPDQ---------L--QNVSSLIIPGG 46 (184)
Q Consensus 2 ~IgVl~~qG~---~~~----~~~~L~~~G~~v~~v~~~~~---------l--~~~DglIipGG 46 (184)
+|||+.=.-. |.+ +.+.+++.|..+.+..+..+ + ..+||+|+.+.
T Consensus 3 ~IGvivp~~~npff~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~ 65 (279)
T PF00532_consen 3 TIGVIVPDISNPFFAEIIRGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILASS 65 (279)
T ss_dssp EEEEEESSSTSHHHHHHHHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESS
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEecc
Confidence 6888763322 233 34567778999887753211 1 47999999964
No 412
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=21.77 E-value=1.6e+02 Score=24.61 Aligned_cols=77 Identities=10% Similarity=0.039 Sum_probs=43.7
Q ss_pred EEEEEecCCCHHHHHHHHHHCCCeEEEEcC-----C---------CCCCCCCEEEEcCCchhHHHHHHhcCChHHHHHHH
Q 030035 2 VVGVLALQGSFNEHIAALKRLGVKGVEIRK-----P---------DQLQNVSSLIIPGGESTTMARLAEYHNLFPALREF 67 (184)
Q Consensus 2 ~IgVl~~qG~~~~~~~~L~~~G~~v~~v~~-----~---------~~l~~~DglIipGG~~~~~~~l~~~~~l~~~l~~~ 67 (184)
||.|---...-.++.+.|++.|++++.... . .+|.++|.||+.....- +.+... . .++.
T Consensus 20 ~IlvTRp~~q~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~NAV--~~~~~~---~-~~~~- 92 (266)
T PRK08811 20 TLISLRPSGEHAPLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSPAAV--RAAHRL---L-PLQR- 92 (266)
T ss_pred EEEEeCCHHHHHHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECHHHH--HHHHHH---h-cccC-
Confidence 455544445556788999999998876532 1 23568999999853322 222110 1 0111
Q ss_pred HHcCCcEEEEchHHHHHHH
Q 030035 68 VKMGKPVWGTCAGLIFLAN 86 (184)
Q Consensus 68 ~~~g~PvlGIC~G~QlLa~ 86 (184)
-.+.|++.|.-+=.--.+
T Consensus 93 -~~~~~~~AVG~~TA~aL~ 110 (266)
T PRK08811 93 -PARAHWLSVGEGTARALQ 110 (266)
T ss_pred -ccCCeEEEECHHHHHHHH
Confidence 136788888766443333
No 413
>PRK05723 flavodoxin; Provisional
Probab=21.62 E-value=2.4e+02 Score=21.40 Aligned_cols=43 Identities=26% Similarity=0.346 Sum_probs=25.0
Q ss_pred CEEEEEe--cCCCHHHHHH----HHHHCCCeEEEEcC--CCCCCCC--CEEEE
Q 030035 1 MVVGVLA--LQGSFNEHIA----ALKRLGVKGVEIRK--PDQLQNV--SSLII 43 (184)
Q Consensus 1 m~IgVl~--~qG~~~~~~~----~L~~~G~~v~~v~~--~~~l~~~--DglIi 43 (184)
|||+|+. -.||-.++.+ .|++.|.++..+.. ..++.++ |.||+
T Consensus 1 ~~i~I~ygS~tG~ae~~A~~la~~l~~~g~~~~~~~~~~~~~~~~~~~~~li~ 53 (151)
T PRK05723 1 MKVAILSGSVYGTAEEVARHAESLLKAAGFEAWHNPRASLQDLQAFAPEALLA 53 (151)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHHHCCCceeecCcCCHhHHHhCCCCeEEE
Confidence 7899883 3566555544 45567888766532 2334433 66655
No 414
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=21.46 E-value=3.1e+02 Score=23.68 Aligned_cols=50 Identities=32% Similarity=0.377 Sum_probs=30.7
Q ss_pred CEEEEEecC-----CC-----HHHHHHHHHHCCCeEEEE---cCC-C--------CCCC-CCEEEEcCCchhH
Q 030035 1 MVVGVLALQ-----GS-----FNEHIAALKRLGVKGVEI---RKP-D--------QLQN-VSSLIIPGGESTT 50 (184)
Q Consensus 1 m~IgVl~~q-----G~-----~~~~~~~L~~~G~~v~~v---~~~-~--------~l~~-~DglIipGG~~~~ 50 (184)
+|++|+... |. -.-+...|++.|+++... .+. + -+++ +|.||++||.+..
T Consensus 160 ~rv~II~TG~Ev~~G~i~D~~~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGtsvg 232 (312)
T cd03522 160 LRVGLIVTGSEVYGGRIEDKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGASVD 232 (312)
T ss_pred CEEEEEEcCCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCcccC
Confidence 378887642 22 223456789999987644 222 1 1233 8999999986543
No 415
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=21.32 E-value=3.3e+02 Score=25.24 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=44.8
Q ss_pred ecCCCHHHHHHHHHHCCCeEEEEcCCCCC-CCCCEEEEcCCchhH-HHHHHhc----------CCh---HHHHHHHHHcC
Q 030035 7 ALQGSFNEHIAALKRLGVKGVEIRKPDQL-QNVSSLIIPGGESTT-MARLAEY----------HNL---FPALREFVKMG 71 (184)
Q Consensus 7 ~~qG~~~~~~~~L~~~G~~v~~v~~~~~l-~~~DglIipGG~~~~-~~~l~~~----------~~l---~~~l~~~~~~g 71 (184)
.+.||..++...+-+.|+.+.++.+...- +-++| .+|-|.+.. ..+++.. ..+ .+.+..+-+.|
T Consensus 239 gl~GNaaei~~~l~~r~~~pD~vtDQTsaHdp~~G-Y~P~G~s~ee~~~lr~~d~~~~~~~a~~sm~~hv~Aml~~q~~G 317 (561)
T COG2987 239 GLLGNAAEILPELLRRGIRPDLVTDQTSAHDPLNG-YLPVGYTVEEADELREEDPDKYRKLARASMARHVEAMLAFQDRG 317 (561)
T ss_pred EEeccHHHHHHHHHHcCCCCceecccccccCcccC-cCCCcCCHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56899999999998999999999754322 33566 778875321 1111111 011 34556666678
Q ss_pred CcEEEEchH
Q 030035 72 KPVWGTCAG 80 (184)
Q Consensus 72 ~PvlGIC~G 80 (184)
.|+|--..-
T Consensus 318 ~~~fDYGNn 326 (561)
T COG2987 318 VPTFDYGNN 326 (561)
T ss_pred CeeeecchH
Confidence 887754433
No 416
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=21.03 E-value=1.5e+02 Score=22.40 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=21.8
Q ss_pred CEEEEEecCCCHHH-HHHHHHHCCCeEEEEc
Q 030035 1 MVVGVLALQGSFNE-HIAALKRLGVKGVEIR 30 (184)
Q Consensus 1 m~IgVl~~qG~~~~-~~~~L~~~G~~v~~v~ 30 (184)
||||++.+ |+... +.+.|.+.|.++....
T Consensus 2 ~~Ig~IGl-G~mG~~~a~~L~~~g~~v~~~d 31 (163)
T PF03446_consen 2 MKIGFIGL-GNMGSAMARNLAKAGYEVTVYD 31 (163)
T ss_dssp BEEEEE---SHHHHHHHHHHHHTTTEEEEEE
T ss_pred CEEEEEch-HHHHHHHHHHHHhcCCeEEeec
Confidence 58999888 88877 5588999999987764
No 417
>PLN02522 ATP citrate (pro-S)-lyase
Probab=20.97 E-value=3.5e+02 Score=25.84 Aligned_cols=73 Identities=21% Similarity=0.293 Sum_probs=44.4
Q ss_pred EEEEEecCCCHHH-HHHHHHHCCCeEEE---Ec-CCC-------------CCCCCCEEEEcC---CchhHHHHHHhcCCh
Q 030035 2 VVGVLALQGSFNE-HIAALKRLGVKGVE---IR-KPD-------------QLQNVSSLIIPG---GESTTMARLAEYHNL 60 (184)
Q Consensus 2 ~IgVl~~qG~~~~-~~~~L~~~G~~v~~---v~-~~~-------------~l~~~DglIipG---G~~~~~~~l~~~~~l 60 (184)
+||+++-.|.+.. +.+.+.+.|.-... +- ++. +=++.+.|++-| |.... .+
T Consensus 169 ~VgiVSqSGtL~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygEiGg~~e~--------~f 240 (608)
T PLN02522 169 SVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGRDEY--------SL 240 (608)
T ss_pred cEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEecCchhHH--------HH
Confidence 4888888888654 56778886653222 11 110 113567887754 32221 25
Q ss_pred HHHHHHHHHcCCcEEEEchHHHH
Q 030035 61 FPALREFVKMGKPVWGTCAGLIF 83 (184)
Q Consensus 61 ~~~l~~~~~~g~PvlGIC~G~Ql 83 (184)
.+++++.. .+|||.+.|.|---
T Consensus 241 ~ea~~~a~-~~KPVVa~kaGrsa 262 (608)
T PLN02522 241 VEALKQGK-VSKPVVAWVSGTCA 262 (608)
T ss_pred HHHHHHhc-CCCCEEEEeccCCC
Confidence 66777654 58999999988643
No 418
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=20.94 E-value=3.9e+02 Score=22.97 Aligned_cols=75 Identities=15% Similarity=0.198 Sum_probs=41.3
Q ss_pred CEEEEEecCCCHH-HHHHHHHHCCCeEEEE-cCC-CC-----------------CCCCCEEEEcCCchhHHHHHHhcCCh
Q 030035 1 MVVGVLALQGSFN-EHIAALKRLGVKGVEI-RKP-DQ-----------------LQNVSSLIIPGGESTTMARLAEYHNL 60 (184)
Q Consensus 1 m~IgVl~~qG~~~-~~~~~L~~~G~~v~~v-~~~-~~-----------------l~~~DglIipGG~~~~~~~l~~~~~l 60 (184)
+||||+.+ |+.. .+.+.|++.|.++.+. +.. +. ++++|.|++.=-....... +
T Consensus 4 kkIgiIG~-G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp~~~~~~------v 76 (314)
T TIGR00465 4 KTVAIIGY-GSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPDEVQHEV------Y 76 (314)
T ss_pred CEEEEEeE-cHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCcHhHHHH------H
Confidence 57888764 7765 4778888888876543 211 10 2346666653221111111 2
Q ss_pred HHHHHHHHHcCCcEEEEchHHHH
Q 030035 61 FPALREFVKMGKPVWGTCAGLIF 83 (184)
Q Consensus 61 ~~~l~~~~~~g~PvlGIC~G~Ql 83 (184)
.+.|+.....+ .++.+++|.-+
T Consensus 77 ~~ei~~~l~~g-~iVs~aaG~~i 98 (314)
T TIGR00465 77 EAEIQPLLKEG-KTLGFSHGFNI 98 (314)
T ss_pred HHHHHhhCCCC-cEEEEeCCccH
Confidence 23344444344 59999999875
No 419
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=20.91 E-value=1.5e+02 Score=24.21 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=30.8
Q ss_pred EEEEEecCCCHHHHHHHHHHCCCeEEEEc-----C-C---------CCCCCCCEEEEcC
Q 030035 2 VVGVLALQGSFNEHIAALKRLGVKGVEIR-----K-P---------DQLQNVSSLIIPG 45 (184)
Q Consensus 2 ~IgVl~~qG~~~~~~~~L~~~G~~v~~v~-----~-~---------~~l~~~DglIipG 45 (184)
||.|---+..-.++.+.|++.|+++..+. . . .++.++|.||++-
T Consensus 5 ~vlvTRp~~~~~~l~~~l~~~G~~~~~~P~i~i~p~~~~~~~~~~l~~l~~~d~iifTS 63 (255)
T PRK05752 5 RLLLTRPAEECAALAASLAEAGIFSSSLPLLAIEPLPETPEQRALLLELDRYCAVIVVS 63 (255)
T ss_pred EEEECCcHHHHHHHHHHHHHcCCCEEEcCcEEEeeCCCCHHHHHHHhcCCCCCEEEEEC
Confidence 55554445556678899999999877652 1 1 3467899999985
No 420
>COG1983 PspC Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]
Probab=20.85 E-value=54 Score=22.17 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=13.8
Q ss_pred cCCcEEEEchHHHHHHHhhh
Q 030035 70 MGKPVWGTCAGLIFLANKAV 89 (184)
Q Consensus 70 ~g~PvlGIC~G~QlLa~~~~ 89 (184)
.++-|.|+|+| ||+.+.
T Consensus 10 ~nr~iaGVcgG---la~yf~ 26 (70)
T COG1983 10 KNRMIAGVCGG---LAEYFG 26 (70)
T ss_pred cCCEeeeeehh---HHHHhC
Confidence 46789999999 677764
No 421
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=20.76 E-value=3.1e+02 Score=19.21 Aligned_cols=69 Identities=17% Similarity=0.123 Sum_probs=38.4
Q ss_pred EEEEecCCCHH---HHHHHHHHCC-CeEEEEcC------CCCCCCCCEEEEcC--CchhHHHHHHhcCChHHHHHHHHHc
Q 030035 3 VGVLALQGSFN---EHIAALKRLG-VKGVEIRK------PDQLQNVSSLIIPG--GESTTMARLAEYHNLFPALREFVKM 70 (184)
Q Consensus 3 IgVl~~qG~~~---~~~~~L~~~G-~~v~~v~~------~~~l~~~DglIipG--G~~~~~~~l~~~~~l~~~l~~~~~~ 70 (184)
|-++...+++. .....|.+.+ ..+..... ...+..-|.+|+-. |+... ..+.++.+.+.
T Consensus 2 I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t~e---------~~~~~~~a~~~ 72 (126)
T cd05008 2 ILIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPLLDEDTLVIAISQSGETAD---------TLAALRLAKEK 72 (126)
T ss_pred EEEEEccHHHHHHHHHHHHHHHhcCCceEEEehhHhhhcCCCCCCCcEEEEEeCCcCCHH---------HHHHHHHHHHc
Confidence 44444443332 2335567765 66655431 11234556665533 44332 35566777778
Q ss_pred CCcEEEEchH
Q 030035 71 GKPVWGTCAG 80 (184)
Q Consensus 71 g~PvlGIC~G 80 (184)
|.|+++|+.-
T Consensus 73 g~~vi~iT~~ 82 (126)
T cd05008 73 GAKTVAITNV 82 (126)
T ss_pred CCeEEEEECC
Confidence 9999999975
No 422
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=20.72 E-value=2.3e+02 Score=26.66 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=23.4
Q ss_pred HHHHHHHCCCeEEEE---cCC-CC--------CCCCCEEEEcCCch
Q 030035 15 HIAALKRLGVKGVEI---RKP-DQ--------LQNVSSLIIPGGES 48 (184)
Q Consensus 15 ~~~~L~~~G~~v~~v---~~~-~~--------l~~~DglIipGG~~ 48 (184)
+...|++.|+++... .+. +. ++++|.||.+||.+
T Consensus 218 l~~~l~~~g~~~~~~~~v~Dd~~~i~~~l~~~~~~~D~iIttGG~s 263 (633)
T PRK14498 218 LAAAVEEAGGEPVRYGIVPDDEEELEAALRKALKECDLVLLSGGTS 263 (633)
T ss_pred HHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEECCCCc
Confidence 557799999987654 222 11 24699999999854
No 423
>PRK04342 DNA topoisomerase VI subunit A; Provisional
Probab=20.67 E-value=1.8e+02 Score=25.78 Aligned_cols=46 Identities=17% Similarity=0.311 Sum_probs=28.2
Q ss_pred CCCCEEEEcC-CchhHHHHHHhcCChHHHHHHHHHcCCcEEEEc----hHHHHHHHhh
Q 030035 36 QNVSSLIIPG-GESTTMARLAEYHNLFPALREFVKMGKPVWGTC----AGLIFLANKA 88 (184)
Q Consensus 36 ~~~DglIipG-G~~~~~~~l~~~~~l~~~l~~~~~~g~PvlGIC----~G~QlLa~~~ 88 (184)
+..+.|+|.| |+++...+ .+...|.+. .+.|+++.+ .|+.+++..-
T Consensus 212 ~~~~~IlItgkG~Pd~~TR-----~fl~~L~~~--~~lpv~~l~D~DP~G~~I~~tyk 262 (367)
T PRK04342 212 KKYNAILVHLKGQPARATR-----RFIKRLNEE--LGLPVYVFTDGDPWGYYIYSVVK 262 (367)
T ss_pred cccCEEEEECCCCCCHHHH-----HHHHHHHHh--cCCCEEEEECCCccHHHHHHHHH
Confidence 3567888888 77653211 122223221 279999887 8888887654
No 424
>PLN02812 5-formyltetrahydrofolate cyclo-ligase
Probab=20.26 E-value=53 Score=26.45 Aligned_cols=50 Identities=12% Similarity=0.120 Sum_probs=27.7
Q ss_pred CCCCEEEEcC-CchhHHHHHHhcCChHHHHHHHHH-----c---CCcEEEEchHHHHHH
Q 030035 36 QNVSSLIIPG-GESTTMARLAEYHNLFPALREFVK-----M---GKPVWGTCAGLIFLA 85 (184)
Q Consensus 36 ~~~DglIipG-G~~~~~~~l~~~~~l~~~l~~~~~-----~---g~PvlGIC~G~QlLa 85 (184)
.+.|.+|+|| +++..-.+|-.-.|+++....... . ..+.+|+|.=.|++-
T Consensus 130 ~~iDliiVP~lafD~~G~RLG~GgGyYDR~L~~~~~~~~~~~~~~~~~igla~~~Q~~~ 188 (211)
T PLN02812 130 EPLDLLLLPGLAFDRSGRRLGRGGGYYDTFLSKYQELAKEKGWKQPLLVALSYSPQILD 188 (211)
T ss_pred CCCCEEEeCceEECCCCCcCcCCCchHHHHHHHhhhhhccccCCCceEEEEeeheeeEC
Confidence 3568999999 664332222222244443222221 1 134899999999874
No 425
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.22 E-value=4.6e+02 Score=21.00 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=22.1
Q ss_pred HHHHHHHCCCeEEEEcCCC------CC--CCCCEEEEcCC
Q 030035 15 HIAALKRLGVKGVEIRKPD------QL--QNVSSLIIPGG 46 (184)
Q Consensus 15 ~~~~L~~~G~~v~~v~~~~------~l--~~~DglIipGG 46 (184)
..+++++.|+++.++.... .+ ..+||+|+.+.
T Consensus 26 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~ 65 (283)
T cd06279 26 VAEVLDAAGVNLLLLPASSEDSDSALVVSALVDGFIVYGV 65 (283)
T ss_pred HHHHHHHCCCEEEEecCccHHHHHHHHHhcCCCEEEEeCC
Confidence 3466778899988875432 11 47899999764
No 426
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=20.20 E-value=2e+02 Score=22.48 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=23.0
Q ss_pred EEEEecCCCHHHHHHHHHHCCCeEEEEcC
Q 030035 3 VGVLALQGSFNEHIAALKRLGVKGVEIRK 31 (184)
Q Consensus 3 IgVl~~qG~~~~~~~~L~~~G~~v~~v~~ 31 (184)
+.+++-.|+|..+++.|++.|.+|..+..
T Consensus 109 ~vLvSgD~DF~~Lv~~lre~G~~V~v~g~ 137 (160)
T TIGR00288 109 VALVTRDADFLPVINKAKENGKETIVIGA 137 (160)
T ss_pred EEEEeccHhHHHHHHHHHHCCCEEEEEeC
Confidence 45566788999999999999988887754
No 427
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=20.19 E-value=2.4e+02 Score=22.50 Aligned_cols=23 Identities=13% Similarity=0.378 Sum_probs=18.7
Q ss_pred EEEEEe-cCCCHHHHHHHHHHCCC
Q 030035 2 VVGVLA-LQGSFNEHIAALKRLGV 24 (184)
Q Consensus 2 ~IgVl~-~qG~~~~~~~~L~~~G~ 24 (184)
||.|++ +.|++.++.+.|++.+.
T Consensus 18 ri~vigDIHG~~~~L~~lL~~i~~ 41 (218)
T PRK11439 18 HIWLVGDIHGCFEQLMRKLRHCRF 41 (218)
T ss_pred eEEEEEcccCCHHHHHHHHHhcCC
Confidence 677765 69999999999998754
No 428
>PF04609 MCR_C: Methyl-coenzyme M reductase operon protein C; InterPro: IPR007687 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein C.; GO: 0003824 catalytic activity, 0015948 methanogenesis
Probab=20.05 E-value=5.4e+02 Score=21.89 Aligned_cols=42 Identities=21% Similarity=0.308 Sum_probs=26.1
Q ss_pred EEEEEecCCCHHHHHHH-----HHHCCCeEEEEcCCCCCCCCCEEEEcC
Q 030035 2 VVGVLALQGSFNEHIAA-----LKRLGVKGVEIRKPDQLQNVSSLIIPG 45 (184)
Q Consensus 2 ~IgVl~~qG~~~~~~~~-----L~~~G~~v~~v~~~~~l~~~DglIipG 45 (184)
+++|+.+ |||.+|+.. |+...+.+++...|.+++.-|. .+.|
T Consensus 131 d~AV~~~-Gn~~~~I~~K~~~ll~~i~iPiVv~~~P~d~~~e~~-YVg~ 177 (268)
T PF04609_consen 131 DLAVFHL-GNFKSCIIYKKRHLLRGIDIPIVVCGGPVDFELEDI-YVGG 177 (268)
T ss_pred CEEEEEe-CCHHHHHHHHHHHHHhhcCCcEEEecCCcccccccc-eecc
Confidence 4666554 999998643 5556777555666766543333 5555
Done!