Your job contains 1 sequence.
>030036
MALKPLVSKCTLPHLYPTFMCYQQPAFRSKGMPQNVLQCNISRRIGVIAVTASTMLAREA
IFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSAS
LKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSI
LSRL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 030036
(184 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:1009023157 - symbol:PQL3 "PsbQ-like 3" species... 271 1.4e-23 1
TAIR|locus:2127393 - symbol:PSBQA "photosystem II subunit... 181 4.9e-14 1
TAIR|locus:2115703 - symbol:PSBQ-2 "photosystem II subuni... 165 2.4e-12 1
UNIPROTKB|P83646 - symbol:OsI_025465 "Oxygen-evolving enh... 145 3.2e-10 1
TAIR|locus:2035775 - symbol:PnsL2 "Photosynthetic NDH su... 111 4.9e-05 1
TAIR|locus:2096707 - symbol:PnsL3 "Photosynthetic NDH su... 110 0.00012 1
>TAIR|locus:1009023157 [details] [associations]
symbol:PQL3 "PsbQ-like 3" species:3702 "Arabidopsis
thaliana" [GO:0005509 "calcium ion binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0009523 "photosystem
II" evidence=IEA] [GO:0009654 "oxygen evolving complex"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=IEA]
[GO:0019898 "extrinsic to membrane" evidence=IEA] [GO:0009767
"photosynthetic electron transport chain" evidence=IMP] [GO:0045156
"electron transporter, transferring electrons within the cyclic
electron transport pathway of photosynthesis activity"
evidence=IMP] InterPro:IPR008797 Pfam:PF05757 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0019898 GO:GO:0005509 EMBL:AC007069
GO:GO:0009535 GO:GO:0009767 EMBL:AC007265 InterPro:IPR023222
SUPFAM:SSF101112 GO:GO:0045156 GO:GO:0009654 EMBL:DQ487506
IPI:IPI00657541 RefSeq:NP_001030947.1 UniGene:At.63225
ProteinModelPortal:Q2V4B2 SMR:Q2V4B2 STRING:Q2V4B2 PaxDb:Q2V4B2
PRIDE:Q2V4B2 EnsemblPlants:AT2G01918.1 GeneID:3768499
KEGG:ath:AT2G01918 TAIR:At2g01918 eggNOG:NOG328971
HOGENOM:HOG000240918 OMA:MAISKPP PhylomeDB:Q2V4B2
ProtClustDB:PLN02956 Genevestigator:Q2V4B2 Uniprot:Q2V4B2
Length = 187
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 67/182 (36%), Positives = 100/182 (54%)
Query: 13 PHLYPTFMCYQQPAFRSKGMPQNVLQCNISRRIGVIAVTASTMLAREAIF----REDIAN 68
P L+ TF Q + + L + SRR + +T S L + F R AN
Sbjct: 7 PPLHFTFFHNQDSSIDTSDS-NLALSIDTSRRRRDVLLTISGTLIPQLFFFDRKRSSSAN 65
Query: 69 AFEFRMVA-----PDQTVEQAESGIRYHAQSLLHVKALL-ESESWSEVQKALRASSASLK 122
A +F P++TVE A+ G+R +A+++ +K ++ E + W E K LR S++++K
Sbjct: 66 AADFFNFGAPPPEPERTVELAQEGLRKNAENIKRIKEIMIEKKLWKEGGKELRRSASNMK 125
Query: 123 QDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILS 182
QD Y +I KP +RP R LYS LFN +TK+DYAARD D ++V + Y N+V LD I
Sbjct: 126 QDFYLIIQAKPPKDRPLFRSLYSSLFNSITKMDYAARDGDETKVLEYYINIVAILDDIFP 185
Query: 183 RL 184
R+
Sbjct: 186 RI 187
>TAIR|locus:2127393 [details] [associations]
symbol:PSBQA "photosystem II subunit QA" species:3702
"Arabidopsis thaliana" [GO:0005509 "calcium ion binding"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009523 "photosystem II" evidence=IEA] [GO:0009654 "oxygen
evolving complex" evidence=IEA;ISS] [GO:0015979 "photosynthesis"
evidence=IEA] [GO:0019898 "extrinsic to membrane" evidence=IEA]
[GO:0030095 "chloroplast photosystem II" evidence=ISS] [GO:0009543
"chloroplast thylakoid lumen" evidence=IDA] [GO:0031977 "thylakoid
lumen" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0009637 "response to blue light" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0009657 "plastid organization" evidence=RCA] [GO:0009744
"response to sucrose stimulus" evidence=RCA] [GO:0010114 "response
to red light" evidence=RCA] [GO:0010155 "regulation of proton
transport" evidence=RCA] [GO:0010207 "photosystem II assembly"
evidence=RCA] [GO:0010218 "response to far red light" evidence=RCA]
[GO:0019684 "photosynthesis, light reaction" evidence=RCA]
[GO:0035304 "regulation of protein dephosphorylation" evidence=RCA]
InterPro:IPR008797 Pfam:PF05757 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR EMBL:AL161554 GO:GO:0019898 GO:GO:0005509
EMBL:AL021960 GO:GO:0009535 GO:GO:0031977 GO:GO:0015979
EMBL:AL031187 InterPro:IPR023222 SUPFAM:SSF101112 GO:GO:0009654
KO:K08901 EMBL:Y16847 EMBL:AY050328 EMBL:AY094048 EMBL:AY088330
IPI:IPI00532582 IPI:IPI00657124 PIR:T04959 RefSeq:NP_001031687.1
RefSeq:NP_193860.1 UniGene:At.24610 ProteinModelPortal:Q9XFT3
SMR:Q9XFT3 STRING:Q9XFT3 SWISS-2DPAGE:Q9XFT3 PaxDb:Q9XFT3
PRIDE:Q9XFT3 ProMEX:Q9XFT3 EnsemblPlants:AT4G21280.2 GeneID:827877
KEGG:ath:AT4G21280 TAIR:At4g21280 eggNOG:NOG313473
HOGENOM:HOG000029167 InParanoid:Q9XFT3 OMA:DRFYLQP PhylomeDB:Q9XFT3
ProtClustDB:CLSN2685363 BioCyc:MetaCyc:AT4G21280-MONOMER
Genevestigator:Q9XFT3 Uniprot:Q9XFT3
Length = 224
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 42/139 (30%), Positives = 81/139 (58%)
Query: 46 GVIAVTASTMLAREAIFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESE 105
G+ A T ++ AR+ F + + F + + P + +A+ A+ +++VK L++ +
Sbjct: 91 GLPAGTDNSDQARD--FALALKDRFYLQPLPPTEAAARAKES----AKDIINVKPLIDRK 144
Query: 106 SWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSR 165
+W VQ LR+ ++ L+ D+ T+I++KP E+ L+ L + LF+ + LDYAA+ K S+
Sbjct: 145 AWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQ 204
Query: 166 VHQCYENVVVALDSILSRL 184
+ Y V AL+ +L++L
Sbjct: 205 AEKYYAETVSALNEVLAKL 223
>TAIR|locus:2115703 [details] [associations]
symbol:PSBQ-2 "photosystem II subunit Q-2" species:3702
"Arabidopsis thaliana" [GO:0005509 "calcium ion binding"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009523 "photosystem II" evidence=IEA] [GO:0009654 "oxygen
evolving complex" evidence=IEA;ISS] [GO:0015979 "photosynthesis"
evidence=IEA;RCA] [GO:0019898 "extrinsic to membrane" evidence=IEA]
[GO:0030095 "chloroplast photosystem II" evidence=ISS] [GO:0009543
"chloroplast thylakoid lumen" evidence=IDA] [GO:0031977 "thylakoid
lumen" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0009570 "chloroplast
stroma" evidence=IDA] [GO:0009534 "chloroplast thylakoid"
evidence=IDA] [GO:0009853 "photorespiration" evidence=RCA]
[GO:0030003 "cellular cation homeostasis" evidence=RCA] [GO:0070838
"divalent metal ion transport" evidence=RCA] InterPro:IPR008797
Pfam:PF05757 GO:GO:0009570 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0019898 GO:GO:0048046 GO:GO:0005509 EMBL:AL161503
GO:GO:0009535 GO:GO:0031977 GO:GO:0015979 InterPro:IPR023222
SUPFAM:SSF101112 GO:GO:0009654 KO:K08901 eggNOG:NOG313473
HOGENOM:HOG000029167 ProtClustDB:CLSN2685363 EMBL:AF372897
EMBL:BT000648 EMBL:AY088008 EMBL:Z17777 IPI:IPI00548616 PIR:B85065
RefSeq:NP_192427.1 UniGene:At.21853 ProteinModelPortal:Q41932
SMR:Q41932 IntAct:Q41932 STRING:Q41932 PaxDb:Q41932 PRIDE:Q41932
ProMEX:Q41932 EnsemblPlants:AT4G05180.1 GeneID:825866
KEGG:ath:AT4G05180 TAIR:At4g05180 InParanoid:Q41932 OMA:YAARSKS
PhylomeDB:Q41932 Genevestigator:Q41932 GermOnline:AT4G05180
Uniprot:Q41932
Length = 230
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 39/139 (28%), Positives = 77/139 (55%)
Query: 46 GVIAVTASTMLAREAIFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESE 105
G + T ++ AR+ F + + F + ++P + +A+ A+ +++VK+ ++ +
Sbjct: 97 GGLPGTDNSDQARD--FSLALKDRFYIQPLSPTEAAARAKDS----AKEIINVKSFIDKK 150
Query: 106 SWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSR 165
+W VQ LR ++ L+ D+ T+I+ KP E+ L+ L + LF + LDYAAR K
Sbjct: 151 AWPYVQNDLRLRASYLRYDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPD 210
Query: 166 VHQCYENVVVALDSILSRL 184
+ Y V +L+++L++L
Sbjct: 211 AEKYYSETVSSLNNVLAKL 229
>UNIPROTKB|P83646 [details] [associations]
symbol:OsI_025465 "Oxygen-evolving enhancer protein 3,
chloroplastic" species:39946 "Oryza sativa Indica Group"
[GO:0009536 "plastid" evidence=IC] InterPro:IPR008797 Pfam:PF05757
GO:GO:0009536 GO:GO:0009570 GO:GO:0019898 GO:GO:0048046
GO:GO:0005509 GO:GO:0009535 GO:GO:0015979 EMBL:CM000132
GO:GO:0009543 InterPro:IPR023222 SUPFAM:SSF101112 GO:GO:0009654
eggNOG:NOG313473 HOGENOM:HOG000029167 ProteinModelPortal:P83646
SMR:P83646 STRING:P83646 PRIDE:P83646 KEGG:dosa:Os07t0544800-01
Gramene:P83646 Uniprot:P83646
Length = 217
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 35/108 (32%), Positives = 59/108 (54%)
Query: 79 QTVEQAESGIRYH--AQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATE 136
Q + AE+ R AQ ++++K L+E + W V+ LR ++ L+ D+ T+IN+KP E
Sbjct: 109 QPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDE 168
Query: 137 RPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184
+ L+ L LF + LD+AA+ K + Y AL +L++L
Sbjct: 169 KKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKL 216
>TAIR|locus:2035775 [details] [associations]
symbol:PnsL2 "Photosynthetic NDH subcomplex L 2"
species:3702 "Arabidopsis thaliana" [GO:0005509 "calcium ion
binding" evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009523 "photosystem II" evidence=IEA] [GO:0009654 "oxygen
evolving complex" evidence=IEA] [GO:0015979 "photosynthesis"
evidence=IEA] [GO:0019898 "extrinsic to membrane" evidence=IEA]
[GO:0030095 "chloroplast photosystem II" evidence=ISS] [GO:0009543
"chloroplast thylakoid lumen" evidence=TAS] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009767 "photosynthetic
electron transport chain" evidence=IMP] [GO:0045156 "electron
transporter, transferring electrons within the cyclic electron
transport pathway of photosynthesis activity" evidence=IMP]
[GO:0009344 "nitrite reductase complex [NAD(P)H]" evidence=IMP]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA]
InterPro:IPR008797 Pfam:PF05757 EMBL:CP002684 GO:GO:0019898
GO:GO:0005509 GO:GO:0009535 EMBL:AC007576 GO:GO:0009767
GO:GO:0009543 UniGene:At.46769 UniGene:At.47475 InterPro:IPR023222
SUPFAM:SSF101112 GO:GO:0045156 GO:GO:0009344 GO:GO:0009654
EMBL:AF083742 EMBL:AF370579 EMBL:AY088325 EMBL:AK229642
IPI:IPI00535075 IPI:IPI00547468 PIR:A86275 RefSeq:NP_563937.1
RefSeq:NP_973820.1 ProteinModelPortal:Q9XI73 SMR:Q9XI73
STRING:Q9XI73 PRIDE:Q9XI73 EnsemblPlants:AT1G14150.1 GeneID:837974
KEGG:ath:AT1G14150 TAIR:At1g14150 eggNOG:NOG253837
HOGENOM:HOG000006297 InParanoid:Q9XI73 KO:K08901 OMA:SWRYVIF
PhylomeDB:Q9XI73 ProtClustDB:PLN02999 Genevestigator:Q9XI73
Uniprot:Q9XI73
Length = 190
Score = 111 (44.1 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 33/138 (23%), Positives = 65/138 (47%)
Query: 47 VIAVTASTMLAREAIFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESES 106
VI S+ LA+E + + + + P + E A + I+ A+ L ++ +L+ S
Sbjct: 55 VIGGATSSALAQE---KWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMS 111
Query: 107 WSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSRV 166
W V +R A L QD+ +N P + R + ++L +++LD+ R V
Sbjct: 112 WRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDFYVRTPKVYES 171
Query: 167 HQCYENVVVALDSILSRL 184
+ YE + ++D+++ L
Sbjct: 172 YLYYEKTLKSIDNVVEFL 189
>TAIR|locus:2096707 [details] [associations]
symbol:PnsL3 "Photosynthetic NDH subcomplex L 3"
species:3702 "Arabidopsis thaliana" [GO:0005509 "calcium ion
binding" evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0009523 "photosystem II" evidence=IEA] [GO:0009654 "oxygen
evolving complex" evidence=IEA;TAS] [GO:0015979 "photosynthesis"
evidence=IEA] [GO:0019898 "extrinsic to membrane" evidence=IEA]
[GO:0030095 "chloroplast photosystem II" evidence=ISS] [GO:0009543
"chloroplast thylakoid lumen" evidence=IDA] [GO:0019684
"photosynthesis, light reaction" evidence=TAS] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009767 "photosynthetic
electron transport chain" evidence=IMP] [GO:0045156 "electron
transporter, transferring electrons within the cyclic electron
transport pathway of photosynthesis activity" evidence=IMP]
[GO:0009344 "nitrite reductase complex [NAD(P)H]" evidence=IMP]
[GO:0000023 "maltose metabolic process" evidence=RCA] [GO:0019252
"starch biosynthetic process" evidence=RCA] [GO:0043085 "positive
regulation of catalytic activity" evidence=RCA] InterPro:IPR008797
Pfam:PF05757 EMBL:CP002686 GO:GO:0019898 GO:GO:0005509
GO:GO:0009535 GO:GO:0009767 InterPro:IPR023222 SUPFAM:SSF101112
EMBL:AC010870 GO:GO:0045156 GO:GO:0009344 GO:GO:0009654 KO:K08901
EMBL:AY070745 EMBL:AY093737 EMBL:AY085184 IPI:IPI00520793
RefSeq:NP_566137.1 UniGene:At.28336 ProteinModelPortal:Q9SGH4
SMR:Q9SGH4 IntAct:Q9SGH4 STRING:Q9SGH4 PRIDE:Q9SGH4
EnsemblPlants:AT3G01440.1 GeneID:821143 KEGG:ath:AT3G01440
TAIR:At3g01440 eggNOG:NOG287651 HOGENOM:HOG000242094
InParanoid:Q9SGH4 OMA:FMYYDFD PhylomeDB:Q9SGH4 ProtClustDB:PLN02729
Genevestigator:Q9SGH4 Uniprot:Q9SGH4
Length = 220
Score = 110 (43.8 bits), Expect = 0.00012, P = 0.00012
Identities = 26/97 (26%), Positives = 53/97 (54%)
Query: 88 IRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDL 147
++ +A LL ++ L+ ++ + V+K LR S L D LI+ + ++ L L + L
Sbjct: 123 VKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTDLANRL 182
Query: 148 FNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184
F+ KL+ AA+ K+++ CY++ L +++R+
Sbjct: 183 FDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRM 219
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.131 0.374 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 184 184 0.00078 110 3 11 22 0.39 32
31 0.40 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 6
No. of states in DFA: 591 (63 KB)
Total size of DFA: 154 KB (2093 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.90u 0.10s 18.00t Elapsed: 00:00:01
Total cpu time: 17.90u 0.10s 18.00t Elapsed: 00:00:01
Start: Fri May 10 06:00:34 2013 End: Fri May 10 06:00:35 2013