BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030036
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NZE|A Chain A, Crystal Structure Of Psbq Polypeptide Of Photosystem Ii
From Higher Plants
pdb|1VYK|A Chain A, Crystal Structure Of Psbq Protein Of Photosystem Ii From
Higher Plants
Length = 149
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 65/115 (56%), Gaps = 4/115 (3%)
Query: 70 FEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLI 129
F + + P + ++A + A +L+VK ++ ++W +Q LR ++ L+ D+ T+I
Sbjct: 38 FYLQPLPPTEAAQRA----KVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVI 93
Query: 130 NNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184
+ KP E+ L++L S LF+ + LD+AA+ K + + Y V ++ +L++L
Sbjct: 94 SAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKL 148
>pdb|3LS0|A Chain A, Crystal Structure Of Cyanobacterial Psbq From
Synechocystis Sp. Pcc 6803
pdb|3LS1|A Chain A, Crystal Structure Of Cyanobacterial Psbq From
Synechocystis Sp. Pcc 6803 Complexed With Zn2+
pdb|3LS1|B Chain B, Crystal Structure Of Cyanobacterial Psbq From
Synechocystis Sp. Pcc 6803 Complexed With Zn2+
Length = 133
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 46/87 (52%)
Query: 98 VKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYA 157
++ L+ ++W + Q + L++D+ L ++ ++ + + L ++F + +LD A
Sbjct: 43 LQGLIADQNWVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKAKTLAKEVFGHLERLDAA 102
Query: 158 ARDKDVSRVHQCYENVVVALDSILSRL 184
A+D++ S+ Y+ + DS L+ L
Sbjct: 103 AKDRNGSQAKIQYQEALADFDSFLNLL 129
>pdb|3FZE|A Chain A, Structure Of The 'minimal Scaffold' (Ms) Domain Of Ste5
That Cocatalyzes Fus3 Phosphorylation By Ste7
Length = 196
Score = 29.6 bits (65), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 40 NISRRIGVIAVTASTMLAREAIFREDIANAFEFRMVAPDQ-TVEQAESGIRYHAQSLLHV 98
NI +G++AV+ S M A+++I +D F P++ ++ + Y + +
Sbjct: 106 NIHEHLGIVAVSNSNMEAKKSILFQDYRCFTSFGRRRPNELKIKVGYLNVDYSDK----I 161
Query: 99 KALLESESWSEVQKAL 114
L+E+ SW+ V + L
Sbjct: 162 DELVEASSWTFVLETL 177
>pdb|4F2H|A Chain A, Structure Of The Minimal Ste5 Vwa Domain Subject To
Autoinhibition By The Ste5 Ph Domain
Length = 207
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 40 NISRRIGVIAVTASTMLAREAIFREDIANAFEFRMVAPDQ-TVEQAESGIRYHAQSLLHV 98
NI +G++AV+ S M A+++I +D F P++ ++ + Y + +
Sbjct: 116 NIHEHLGIVAVSNSNMEAKKSILFQDYRCFTSFGRRRPNELKIKVGYLNVDYSDK----I 171
Query: 99 KALLESESWSEVQKAL 114
L+E+ SW+ V + L
Sbjct: 172 DELVEASSWTFVLETL 187
>pdb|3KGF|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine And Tryptophan
pdb|3KGF|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine And Tryptophan
pdb|3NUD|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine
pdb|3NUD|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Phenylalanine
pdb|3NUE|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Tryptophan
pdb|3NUE|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Complexed With Tryptophan
pdb|3NV8|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase In Complex With Phosphoenol
Pyruvate And Manganese (Thesit-Free)
pdb|3NV8|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase In Complex With Phosphoenol
Pyruvate And Manganese (Thesit-Free)
pdb|3PFP|A Chain A, Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate
Synthase From Mycobacterium Tuberculosis In Complex With
An Active Site Inhibitor
pdb|3PFP|B Chain B, Structure Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate
Synthase From Mycobacterium Tuberculosis In Complex With
An Active Site Inhibitor
Length = 464
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 14/103 (13%)
Query: 81 VEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLK---QDIYTLINNKPATER 137
++ E IR + ++LL + +L + V K R + K DI L
Sbjct: 94 MDNTEPHIRGNVRALLQMAVVLTYGASMPVVKVARIAGQYAKPRSADIDAL--------- 144
Query: 138 PQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSI 180
LR D+ NG D AAR+ D SR+ + Y N A++ +
Sbjct: 145 -GLRSYRGDMINGFAP-DAAAREHDPSRLVRAYANASAAMNLV 185
>pdb|3RZI|A Chain A, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Cocrystallized And Complexed With Phenylalanine And
Tryptophan
pdb|3RZI|B Chain B, The Structure Of 3-Deoxy-D-Arabino-Heptulosonate
7-Phosphate Synthase From Mycobacterium Tuberculosis
Cocrystallized And Complexed With Phenylalanine And
Tryptophan
pdb|2YPO|A Chain A, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Phenylalanine Bound In Only One Site
pdb|2YPO|B Chain B, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Phenylalanine Bound In Only One Site
pdb|2YPP|A Chain A, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase In
Complex With 3 Tyrosine Molecules
pdb|2YPP|B Chain B, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase In
Complex With 3 Tyrosine Molecules
pdb|2YPQ|A Chain A, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Tryptophan And Tyrosine Bound
pdb|2YPQ|B Chain B, 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase With
Tryptophan And Tyrosine Bound
Length = 462
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 14/103 (13%)
Query: 81 VEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLK---QDIYTLINNKPATER 137
++ E IR + ++LL + +L + V K R + K DI L
Sbjct: 92 MDNTEPHIRGNVRALLQMAVVLTYGASMPVVKVARIAGQYAKPRSADIDAL--------- 142
Query: 138 PQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSI 180
LR D+ NG D AAR+ D SR+ + Y N A++ +
Sbjct: 143 -GLRSYRGDMINGFAP-DAAAREHDPSRLVRAYANASAAMNLV 183
>pdb|2W19|A Chain A, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis
pdb|2W19|B Chain B, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis
pdb|2W1A|A Chain A, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis With Bound Tsa
pdb|2W1A|B Chain B, Non-Covalent Complex Between Dahp Synthase And Chorismate
Mutase From Mycobacterium Tuberculosis With Bound Tsa
Length = 472
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 14/103 (13%)
Query: 81 VEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLK---QDIYTLINNKPATER 137
++ E IR + ++LL + +L + V K R + K DI L
Sbjct: 102 MDNTEPHIRGNVRALLQMAVVLTYGASMPVVKVARIAGQYAKPRSADIDAL--------- 152
Query: 138 PQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSI 180
LR D+ NG D AAR+ D SR+ + Y N A++ +
Sbjct: 153 -GLRSYRGDMINGFAP-DAAAREHDPSRLVRAYANASAAMNLV 193
>pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5
(BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP
pdb|3IUC|C Chain C, Crystal Structure Of The Human 70kda Heat Shock Protein 5
(BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP
Length = 408
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 22/91 (24%)
Query: 81 VEQAESGIRYHAQSLLHVKALLESESWSE---------------------VQKALRASSA 119
VE+A+ + Q+ + +++ E E +SE VQK L S
Sbjct: 290 VEKAKRALSSQHQARIEIESFYEGEDFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDL 349
Query: 120 SLKQDIYTLINNKPATERPQLRKLYSDLFNG 150
K DI ++ +T P++++L + FNG
Sbjct: 350 K-KSDIDEIVLVGGSTRIPKIQQLVKEFFNG 379
>pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Complex With Atp
pdb|3LDL|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Complex With Atp
pdb|3LDN|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Apo Form
pdb|3LDN|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Apo Form
pdb|3LDO|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 / Bip) Atpase Domain In Complex With Amppnp
pdb|3LDO|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 / Bip) Atpase Domain In Complex With Amppnp
pdb|3LDP|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Complex With Small Molecule
Inhibitor
pdb|3LDP|B Chain B, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein
5 BIP) Atpase Domain In Complex With Small Molecule
Inhibitor
Length = 384
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 22/91 (24%)
Query: 81 VEQAESGIRYHAQSLLHVKALLESESWSE---------------------VQKALRASSA 119
VE+A+ + Q+ + +++ E E +SE VQK L S
Sbjct: 269 VEKAKRALSSQHQARIEIESFYEGEDFSETLTRAKFEELNMDLFRSTMKPVQKVLEDSDL 328
Query: 120 SLKQDIYTLINNKPATERPQLRKLYSDLFNG 150
K DI ++ +T P++++L + FNG
Sbjct: 329 K-KSDIDEIVLVGGSTRIPKIQQLVKEFFNG 358
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 48 IAVTASTMLAREAIFREDIANAFEFRMVAPDQTVEQAESGIRY 90
IA++ +T L ED+ N + A D V++A+ GI +
Sbjct: 100 IAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVF 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.131 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,559,665
Number of Sequences: 62578
Number of extensions: 152043
Number of successful extensions: 304
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 301
Number of HSP's gapped (non-prelim): 15
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)