BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030036
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2V4B2|PQL3_ARATH PsbQ-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=PQL3
PE=2 SV=1
Length = 187
Score = 110 bits (275), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 92/158 (58%), Gaps = 10/158 (6%)
Query: 37 LQCNISRRIGVIAVTASTMLAREAIF----REDIANAFEFRMVA-----PDQTVEQAESG 87
L + SRR + +T S L + F R ANA +F P++TVE A+ G
Sbjct: 30 LSIDTSRRRRDVLLTISGTLIPQLFFFDRKRSSSANAADFFNFGAPPPEPERTVELAQEG 89
Query: 88 IRYHAQSLLHVKALL-ESESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSD 146
+R +A+++ +K ++ E + W E K LR S++++KQD Y +I KP +RP R LYS
Sbjct: 90 LRKNAENIKRIKEIMIEKKLWKEGGKELRRSASNMKQDFYLIIQAKPPKDRPLFRSLYSS 149
Query: 147 LFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184
LFN +TK+DYAARD D ++V + Y N+V LD I R+
Sbjct: 150 LFNSITKMDYAARDGDETKVLEYYINIVAILDDIFPRI 187
>sp|Q9XFT3|PSBQ1_ARATH Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis
thaliana GN=PSBQ1 PE=1 SV=3
Length = 224
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 81/139 (58%), Gaps = 6/139 (4%)
Query: 46 GVIAVTASTMLAREAIFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESE 105
G+ A T ++ AR+ F + + F + + P + +A + A+ +++VK L++ +
Sbjct: 91 GLPAGTDNSDQARD--FALALKDRFYLQPLPPTEAAARA----KESAKDIINVKPLIDRK 144
Query: 106 SWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSR 165
+W VQ LR+ ++ L+ D+ T+I++KP E+ L+ L + LF+ + LDYAA+ K S+
Sbjct: 145 AWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQ 204
Query: 166 VHQCYENVVVALDSILSRL 184
+ Y V AL+ +L++L
Sbjct: 205 AEKYYAETVSALNEVLAKL 223
>sp|Q41932|PSBQ2_ARATH Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis
thaliana GN=PSBQ2 PE=1 SV=2
Length = 230
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 77/139 (55%), Gaps = 6/139 (4%)
Query: 46 GVIAVTASTMLAREAIFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESE 105
G + T ++ AR+ F + + F + ++P + +A+ A+ +++VK+ ++ +
Sbjct: 97 GGLPGTDNSDQARD--FSLALKDRFYIQPLSPTEAAARAKD----SAKEIINVKSFIDKK 150
Query: 106 SWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSR 165
+W VQ LR ++ L+ D+ T+I+ KP E+ L+ L + LF + LDYAAR K
Sbjct: 151 AWPYVQNDLRLRASYLRYDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPD 210
Query: 166 VHQCYENVVVALDSILSRL 184
+ Y V +L+++L++L
Sbjct: 211 AEKYYSETVSSLNNVLAKL 229
>sp|P12301|PSBQ_SPIOL Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia
oleracea GN=PSBQ PE=1 SV=1
Length = 232
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 65/115 (56%), Gaps = 4/115 (3%)
Query: 70 FEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLI 129
F + + P + ++A + A +L+VK ++ ++W +Q LR ++ L+ D+ T+I
Sbjct: 121 FYLQPLPPTEAAQRA----KVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVI 176
Query: 130 NNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184
+ KP E+ L++L S LF+ + LD+AA+ K + + Y V ++ +L++L
Sbjct: 177 SAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKL 231
>sp|Q41048|PSBQ1_MAIZE Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays
GN=PSBQ1 PE=2 SV=1
Length = 217
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 60/102 (58%)
Query: 83 QAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRK 142
+A + ++ AQ ++++K L++ ++W VQ LR ++ L+ D+ T+I +KP E+ L++
Sbjct: 115 EAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKE 174
Query: 143 LYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184
L LF+ + LD+AA+ K + + AL +L++L
Sbjct: 175 LTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKL 216
>sp|Q41806|PSBQ2_MAIZE Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays
GN=PSBQ2 PE=3 SV=1
Length = 213
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 60/102 (58%)
Query: 83 QAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRK 142
+A + ++ AQ ++++K L++ ++W VQ LR ++ L+ D+ T+I +KP E+ L++
Sbjct: 111 EAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLKE 170
Query: 143 LYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184
L LF+ + LD+AA+ K + + AL +L++L
Sbjct: 171 LTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLAKL 212
>sp|Q0D5P8|PSBQ_ORYSJ Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa
subsp. japonica GN=Os07g0544800 PE=2 SV=1
Length = 217
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 79 QTVEQAESGIRYH--AQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATE 136
Q + AE+ R AQ ++++K L+E + W V+ LR ++ L+ D+ T+IN+KP E
Sbjct: 109 QPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDE 168
Query: 137 RPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184
+ L+ L LF + LD+AA+ K + Y AL +L++L
Sbjct: 169 KKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKL 216
>sp|P83646|PSBQ_ORYSI Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa
subsp. indica GN=OsI_025465 PE=1 SV=2
Length = 217
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 2/108 (1%)
Query: 79 QTVEQAESGIRYH--AQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATE 136
Q + AE+ R AQ ++++K L+E + W V+ LR ++ L+ D+ T+IN+KP E
Sbjct: 109 QPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDE 168
Query: 137 RPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184
+ L+ L LF + LD+AA+ K + Y AL +L++L
Sbjct: 169 KKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKL 216
>sp|Q9SGH4|PQL2_ARATH PsbQ-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PQL2
PE=1 SV=1
Length = 220
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 53/97 (54%)
Query: 88 IRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDL 147
++ +A LL ++ L+ ++ + V+K LR S L D LI+ + ++ L L + L
Sbjct: 123 VKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTDLANRL 182
Query: 148 FNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184
F+ KL+ AA+ K+++ CY++ L +++R+
Sbjct: 183 FDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRM 219
>sp|Q9XI73|PQL1_ARATH PsbQ-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PQL1
PE=1 SV=1
Length = 190
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 47 VIAVTASTMLAREAIFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLESES 106
VI S+ LA+E + + + + P + E A + I+ A+ L ++ +L+ S
Sbjct: 55 VIGGATSSALAQE---KWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMS 111
Query: 107 WSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSRV 166
W V +R A L QD+ +N P + R + ++L +++LD+ R V
Sbjct: 112 WRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDFYVRTPKVYES 171
Query: 167 HQCYENVVVALDSILSRL 184
+ YE + ++D+++ L
Sbjct: 172 YLYYEKTLKSIDNVVEFL 189
>sp|O22591|PSBQ_ONOVI Oxygen-evolving enhancer protein 3, chloroplastic OS=Onobrychis
viciifolia GN=PSBQ PE=2 SV=1
Length = 231
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 89 RYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSD-L 147
R A+ ++ VK ++ + LR ++ L+ D+ T+I++KP ++ L++ + L
Sbjct: 134 RESAKEIVAVKKFIDQKLGHMFINDLRLRASYLRYDLNTVISSKPKEQKQSLKESSAGKL 193
Query: 148 FNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184
F + LDYAA+ K + + Y + V L+ +LS++
Sbjct: 194 FQDIDNLDYAAKLKSAPQAEKYYADAVSTLNDVLSKI 230
>sp|P12852|PSBQ_CHLRE Oxygen-evolving enhancer protein 3, chloroplastic OS=Chlamydomonas
reinhardtii GN=PSBQ PE=2 SV=1
Length = 199
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%)
Query: 107 WSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSRV 166
W+E ++ LR +L+ D+ TL + K + L + V LD+A R+KD +
Sbjct: 121 WTEAREQLRRQVGTLRFDLNTLASTKEKEAKKAALGLRKEFIQAVEDLDFALREKDQASA 180
Query: 167 HQCYENVVVALDSILS 182
+ E LDS+L+
Sbjct: 181 AKKLEITKAKLDSVLA 196
>sp|Q4ZMV1|DEOC_PSEU2 Deoxyribose-phosphate aldolase OS=Pseudomonas syringae pv. syringae
(strain B728a) GN=deoC PE=3 SV=1
Length = 226
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 34 QNVLQCNISRRIGVIAVTASTMLAREAIFREDIANAFEFRMVAPDQTVEQAESGIRYHAQ 93
Q V C I R +GV V ST +R ED+ A R+V PD V +A G+R A
Sbjct: 140 QKVRACEICRELGVAFVKTSTGFSRSGATLEDV--ALMRRVVGPDIGV-KASGGVRDVAT 196
Query: 94 SLLHVKA 100
+ ++A
Sbjct: 197 ARAMIEA 203
>sp|Q41643|PSBQ_VOLCA Oxygen-evolving enhancer protein 3, chloroplastic OS=Volvox carteri
GN=PSBQ PE=2 SV=1
Length = 202
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 6/128 (4%)
Query: 57 AREAIFREDIANAFEFRMVAPDQTVEQA-ESGIRYHAQSLLHVKALLESESWSEVQKALR 115
AR+ R+ + + + D T+++ ES R A ++ ++ W+E ++ LR
Sbjct: 76 ARDLDLRQSARDGLDQARGSIDATIKRVKESETRIDA----DLEGFIKKNYWTEAREQLR 131
Query: 116 ASSASLKQDIYTLINNKPATERPQLRKLYSDLF-NGVTKLDYAARDKDVSRVHQCYENVV 174
+L+ D+ TL + K + F V LD+A R+KD + + E
Sbjct: 132 RQVGTLRFDLNTLASAKGVKAEKKKALELKKEFIQKVEDLDFALREKDETSALKKLEAAK 191
Query: 175 VALDSILS 182
ALDS+L+
Sbjct: 192 SALDSVLA 199
>sp|B1YJ36|ARLY_EXIS2 Argininosuccinate lyase OS=Exiguobacterium sibiricum (strain DSM
17290 / JCM 13490 / 255-15) GN=argH PE=3 SV=1
Length = 457
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 91 HAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNG 150
HAQ +L+ + +LE W +++ L+ +L+Q +YT ++ L +L ++
Sbjct: 41 HAQ-MLYEQGILEKTEWEQIEAGLKQLQTTLEQHVYTTVDEDI---HMNLERLLTEQIGP 96
Query: 151 VTKLDYAAR---DKDVSRVHQCYENVVVALDSILSRL 184
V + AR D+ + +H E V+ L S L L
Sbjct: 97 VAGKLHTARSRNDQVATDLHLWMEQHVLELLSSLRNL 133
>sp|Q91883|GRP78_XENLA 78 kDa glucose-regulated protein OS=Xenopus laevis GN=hspa5 PE=2
SV=1
Length = 658
Score = 31.2 bits (69), Expect = 3.6, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 22/93 (23%)
Query: 79 QTVEQAESGIRYHAQSLLHVKALLESESWSE---------------------VQKALRAS 117
+ VE+A+ + QS + +++ E E +SE VQK L S
Sbjct: 291 REVEKAKRALSAQHQSRIEIESFFEGEDFSETLTRAKFEELNMDLFRSTMKPVQKVLDDS 350
Query: 118 SASLKQDIYTLINNKPATERPQLRKLYSDLFNG 150
K DI ++ +T P++++L +LFNG
Sbjct: 351 DLK-KSDIDEIVLVGGSTRIPKIQQLVKELFNG 382
>sp|A7NPY6|RLMN_ROSCS Probable dual-specificity RNA methyltransferase RlmN OS=Roseiflexus
castenholzii (strain DSM 13941 / HLO8) GN=rlmN PE=3 SV=1
Length = 399
Score = 30.4 bits (67), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 19/113 (16%)
Query: 1 MALKPLVSKCTLPHLYPTFMC--------YQQPAFRSKGMPQNVLQCNISRRIGV-IAVT 51
M P+ ++ TLP+LY + + QP +R++ + R++ V +A T
Sbjct: 1 MTALPVTNRDTLPNLYDLSLAEMERLLTDWGQPTYRAR---------QVFRQLYVNLADT 51
Query: 52 ASTMLAREAIFREDIANAFEFRMVAPDQTVEQAESGIRYHAQSLLHVKALLES 104
M RE +AN V P+Q V+ A++G+ A L AL+ES
Sbjct: 52 PLAMTDLPLALRERLANETRLAPVTPEQ-VQTADNGLTRKALFRLPNGALVES 103
>sp|Q7NC50|SECA_MYCGA Protein translocase subunit SecA OS=Mycoplasma gallisepticum
(strain R(low / passage 15 / clone 2)) GN=secA PE=3 SV=1
Length = 890
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 113 ALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYEN 172
AL S LK IY ++ T RP +RK + D G K + A ++ ++H+ +
Sbjct: 373 ALTESEEFLK--IYNMVVVPVPTNRPVIRKDHPDFMFGNLKTKWEAVVNEIEKIHKTGQP 430
Query: 173 VVVALDSI 180
++V S+
Sbjct: 431 ILVGTGSV 438
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.131 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,724,719
Number of Sequences: 539616
Number of extensions: 1981904
Number of successful extensions: 5707
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 5690
Number of HSP's gapped (non-prelim): 29
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)