Query 030036
Match_columns 184
No_of_seqs 98 out of 104
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 11:54:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030036.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030036hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyk_A Oxygen-evolving enhance 100.0 9.7E-45 3.3E-49 291.9 11.0 125 60-184 19-148 (149)
2 3zsu_A TLL2057 protein, cyanoq 100.0 5.7E-29 2E-33 196.5 13.5 109 76-184 11-126 (130)
3 3ls0_A SLL1638 protein, PSBQ; 100.0 1.8E-28 6.2E-33 194.3 11.8 109 76-184 13-129 (133)
4 3rfy_A Peptidyl-prolyl CIS-tra 95.5 0.01 3.5E-07 53.4 4.2 104 72-180 39-145 (369)
5 3us6_A Histidine-containing ph 70.4 32 0.0011 26.4 9.0 77 88-182 50-128 (153)
6 2js5_A Uncharacterized protein 50.9 28 0.00096 24.5 4.9 44 114-158 15-58 (71)
7 3r6n_A Desmoplakin; spectrin r 48.2 79 0.0027 28.5 8.7 106 73-181 332-446 (450)
8 2rpa_A Katanin P60 ATPase-cont 44.6 41 0.0014 23.7 5.0 38 147-184 12-49 (78)
9 3csx_A Putative uncharacterize 44.2 35 0.0012 24.6 4.6 44 114-158 27-70 (81)
10 1wfd_A Hypothetical protein 15 35.7 74 0.0025 22.5 5.3 43 136-181 7-49 (93)
11 3r8n_T 30S ribosomal protein S 35.6 58 0.002 23.3 4.7 32 151-182 30-61 (85)
12 2c5k_T Syntaxin TLG1, T-snare 32.4 96 0.0033 22.3 5.5 54 107-160 8-61 (95)
13 1uk5_A BAG-family molecular ch 31.4 1.5E+02 0.0052 22.2 6.6 30 75-104 21-52 (111)
14 3c0f_B Uncharacterized protein 31.1 10 0.00036 27.9 0.0 13 16-28 48-60 (91)
15 2w6b_A RHO guanine nucleotide 29.7 16 0.00056 24.7 0.8 50 101-150 2-53 (56)
16 2k8q_A Protein SHQ1; beta-sand 29.3 18 0.00063 28.1 1.2 22 18-39 39-60 (134)
17 3myf_A Sensor protein; HPT, hi 29.2 1.6E+02 0.0056 21.2 7.4 29 88-116 30-58 (119)
18 3iqt_A Signal transduction his 28.4 1.4E+02 0.0049 21.8 6.0 29 88-116 39-67 (123)
19 2vqe_T 30S ribosomal protein S 27.0 91 0.0031 23.3 4.6 32 151-182 37-68 (106)
20 1sr2_A Putative sensor-like hi 26.7 1.8E+02 0.0063 21.0 7.6 72 89-178 42-113 (116)
21 2p06_A Hypothetical protein AF 26.0 52 0.0018 24.4 3.1 28 92-119 66-93 (114)
22 3eud_A Protein SHQ1; CS domain 24.5 21 0.0007 27.3 0.6 21 18-38 53-73 (115)
23 2j8w_A Cytochrome C'; heme, ir 22.5 1.4E+02 0.0049 21.7 5.0 40 136-175 78-117 (129)
24 2ykz_A Cytochrome C'; electron 22.0 1.5E+02 0.0051 21.6 5.0 40 136-175 75-114 (127)
25 1yvi_A Histidine-containing ph 21.6 2.5E+02 0.0086 20.8 8.9 73 91-181 54-128 (149)
26 2cpt_A SKD1 protein, vacuolar 20.4 2.4E+02 0.0083 20.7 5.9 38 141-181 15-52 (117)
27 3mab_A Uncharacterized protein 20.1 89 0.0031 22.5 3.3 25 122-146 55-84 (93)
No 1
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=100.00 E-value=9.7e-45 Score=291.93 Aligned_cols=125 Identities=26% Similarity=0.441 Sum_probs=110.7
Q ss_pred hhcccccccccee-----eeecCCCCHHHHHHHHHHHHHhHHHHHHhhhhcChHHHHHHHhhchhhhHHHHHHHhhcCCC
Q 030036 60 AIFREDIANAFEF-----RMVAPDQTVEQAESGIRYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPA 134 (184)
Q Consensus 60 ~~~~~~~a~~~~~-----rf~~ppl~~~eA~~RIke~A~~L~~lk~lIdkksW~~Vrn~LRlka~~Lr~DL~~lIss~P~ 134 (184)
++.|+||||||+| |||+||++|+||++||++++++|++|++||++++|+|||||||||+|+||+||++||+++|+
T Consensus 19 g~~~~~~ard~~l~~~k~~f~~~~l~~~~a~~rIk~~a~~i~~vk~lI~k~~W~~vrn~LR~~~~~Lr~Dl~~li~slp~ 98 (149)
T 1vyk_A 19 GTENSDQARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPK 98 (149)
T ss_dssp ---------------CTTCCEECCCCHHHHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred CcccchhhhccCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHhHHHHHHHHHHHHHhCCH
Confidence 5699999999998 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHhHhhchHhHHHHHhcCChHHHHHHHHHHHHHHHHHHhhC
Q 030036 135 TERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184 (184)
Q Consensus 135 d~Kk~l~~La~~LF~~le~LD~AAr~Kn~~~A~~~Y~~tv~~LdevLa~i 184 (184)
++|+++++||++||++|++||+|||.||.++|++||++|+++||+||++|
T Consensus 99 ~~kk~l~~La~~Lf~~le~LD~AAr~kd~~~a~~~Y~~t~~~ld~vl~~l 148 (149)
T 1vyk_A 99 DEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKL 148 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999975
No 2
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=99.96 E-value=5.7e-29 Score=196.53 Aligned_cols=109 Identities=17% Similarity=0.264 Sum_probs=102.8
Q ss_pred cCCCCHHHHHHHHHHHHHhHH-------HHHHhhhhcChHHHHHHHhhchhhhHHHHHHHhhcCCCCChHHHHHHHHhHh
Q 030036 76 APDQTVEQAESGIRYHAQSLL-------HVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLF 148 (184)
Q Consensus 76 ~ppl~~~eA~~RIke~A~~L~-------~lk~lIdkksW~~Vrn~LRlka~~Lr~DL~~lIss~P~d~Kk~l~~La~~LF 148 (184)
.||+|+.+.+++|+.++++|. +++.+|++++|++||||||||+|+||+||++|+++|++.+||++++++++||
T Consensus 11 ~pptysp~~i~~iq~y~~~i~~~r~Rl~eL~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~ 90 (130)
T 3zsu_A 11 PPPTYSELQITRIQDYLRDIEKNAERFADLEVSVAKGDWQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTPTALTRALT 90 (130)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHTSCGGGSHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHhchHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHH
Confidence 499999999999888888775 4588999999999999999999999999999999998889999999999999
Q ss_pred hchHhHHHHHhcCChHHHHHHHHHHHHHHHHHHhhC
Q 030036 149 NGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184 (184)
Q Consensus 149 ~~le~LD~AAr~Kn~~~A~~~Y~~tv~~LdevLa~i 184 (184)
++|++||+||+.+|...|++.|++++++||.|++.|
T Consensus 91 ~~L~~LD~AA~~~n~~~a~k~Y~~a~adfdafl~li 126 (130)
T 3zsu_A 91 DDFLKIDQGADLDSVTVAQEGFREAEADFKAYLNSL 126 (130)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999875
No 3
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=99.95 E-value=1.8e-28 Score=194.30 Aligned_cols=109 Identities=18% Similarity=0.391 Sum_probs=100.0
Q ss_pred cCCCCHHHHHHHHHHHHHhHH-------H-HHHhhhhcChHHHHHHHhhchhhhHHHHHHHhhcCCCCChHHHHHHHHhH
Q 030036 76 APDQTVEQAESGIRYHAQSLL-------H-VKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDL 147 (184)
Q Consensus 76 ~ppl~~~eA~~RIke~A~~L~-------~-lk~lIdkksW~~Vrn~LRlka~~Lr~DL~~lIss~P~d~Kk~l~~La~~L 147 (184)
.||+|+.+.+++|+.++++|. + ++.+|++++|++||||||||+|+||+||++|+++|++.+||++++++++|
T Consensus 13 ~pptysp~~i~~Iq~y~~~i~~ar~Rl~e~L~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l 92 (133)
T 3ls0_A 13 IPTTYSPEKIAQLQVYVNPIAVARDGMEKRLQGLIADQNWVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKAKTLAKEV 92 (133)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHTTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcchHHHHHHHhchHHHHHHHHHHHHHhcChhhhHHHHHHHHHH
Confidence 699999999888887777664 5 67899999999999999999999999999999999888999999999999
Q ss_pred hhchHhHHHHHhcCChHHHHHHHHHHHHHHHHHHhhC
Q 030036 148 FNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184 (184)
Q Consensus 148 F~~le~LD~AAr~Kn~~~A~~~Y~~tv~~LdevLa~i 184 (184)
|++|++||+||+.+|.+.|++.|++++++||.|++.|
T Consensus 93 ~~~L~~LD~AA~~~n~~~a~k~Y~~a~adfdafl~li 129 (133)
T 3ls0_A 93 FGHLERLDAAAKDRNGSQAKIQYQEALADFDSFLNLL 129 (133)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999876
No 4
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=95.50 E-value=0.01 Score=53.35 Aligned_cols=104 Identities=14% Similarity=0.228 Sum_probs=85.7
Q ss_pred eeeecCCCCHHHHHHHHHHHHHhHHHHHHhhhh---cChHHHHHHHhhchhhhHHHHHHHhhcCCCCChHHHHHHHHhHh
Q 030036 72 FRMVAPDQTVEQAESGIRYHAQSLLHVKALLES---ESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLF 148 (184)
Q Consensus 72 ~rf~~ppl~~~eA~~RIke~A~~L~~lk~lIdk---ksW~~Vrn~LRlka~~Lr~DL~~lIss~P~d~Kk~l~~La~~LF 148 (184)
||..+|=-.+ .+..|+ ..|.++-+++.- |.|.-+.+.++..+.-|..+=+.|+.+.|+++|+++.++.++|=
T Consensus 39 lr~alp~~~~--~~~~~q---~~le~~~~~lr~~~~k~~~~~~~~~~~~~~~~~~~~~~il~~v~~~~~~~~~~~~~~l~ 113 (369)
T 3rfy_A 39 LRYALPIDNK--AIREVQ---KPLEDITDSLKIAGVKALDSVERNVRQASRTLQQGKSIIVAGFAESKKDHGNEMIEKLE 113 (369)
T ss_dssp HHHHSCCCCH--HHHHHH---HHHHTHHHHTTSCSTTTHHHHHHHHHHHHHHHSCHHHHHTTTCCGGGHHHHHHHHHHHH
T ss_pred HhhhcCCCCh--hHHHHH---HHHHHHHHHhccccCCCchHHHHHHHHHHHHHhhCHHHHHhhcChhhHHHHHHHHHHHH
Confidence 3666665443 233444 445555566655 89999999999999999999999999999999999999999999
Q ss_pred hchHhHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 030036 149 NGVTKLDYAARDKDVSRVHQCYENVVVALDSI 180 (184)
Q Consensus 149 ~~le~LD~AAr~Kn~~~A~~~Y~~tv~~Ldev 180 (184)
..|++|..++..+|........++++..+.++
T Consensus 114 ~~l~~l~~~~~~~d~~~~~~~~~~~l~~v~~l 145 (369)
T 3rfy_A 114 AGMQDMLKIVEDRKRDAVAPKQKEILKYVGGI 145 (369)
T ss_dssp HHHHHHHCCCSSCCCSSSGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888888877665
No 5
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=70.45 E-value=32 Score=26.38 Aligned_cols=77 Identities=8% Similarity=0.136 Sum_probs=44.5
Q ss_pred HHHHHHhHHHHHHhhhhc--ChHHHHHHHhhchhhhHHHHHHHhhcCCCCChHHHHHHHHhHhhchHhHHHHHhcCChHH
Q 030036 88 IRYHAQSLLHVKALLESE--SWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSR 165 (184)
Q Consensus 88 Ike~A~~L~~lk~lIdkk--sW~~Vrn~LRlka~~Lr~DL~~lIss~P~d~Kk~l~~La~~LF~~le~LD~AAr~Kn~~~ 165 (184)
+.++.+.|..++..++.+ +|..+....|. |+....++.. ..|.+--.+|..+++.++...
T Consensus 50 l~d~~~~l~~L~~al~~~~~D~~~l~~~aH~--------LKGss~~lGa----------~~l~~~c~~lE~~~~~~~~~~ 111 (153)
T 3us6_A 50 FDDSERILKDLSFAVDQQSIDFKKVDAHVHQ--------FKGSSASIGA----------QRVKNSCVAFRNFCEEQNIDA 111 (153)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH--------HHHHHHHHTC----------HHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccHHHHHHHHHH--------HHHHHHHhcH----------HHHHHHHHHHHHHHHcCCHHH
Confidence 445555566777777776 77777655552 2222222222 234444556777888888776
Q ss_pred HHHHHHHHHHHHHHHHh
Q 030036 166 VHQCYENVVVALDSILS 182 (184)
Q Consensus 166 A~~~Y~~tv~~LdevLa 182 (184)
+...+++....++.+..
T Consensus 112 ~~~~l~~l~~e~~~v~~ 128 (153)
T 3us6_A 112 CRRCLQQVKQEYLLVKN 128 (153)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666665555543
No 6
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=50.88 E-value=28 Score=24.52 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=38.3
Q ss_pred HhhchhhhHHHHHHHhhcCCCCChHHHHHHHHhHhhchHhHHHHH
Q 030036 114 LRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAA 158 (184)
Q Consensus 114 LRlka~~Lr~DL~~lIss~P~d~Kk~l~~La~~LF~~le~LD~AA 158 (184)
|..+++.+..||-.|..-+|-+= ..+-.+|.+.|+-+.++|.|=
T Consensus 15 L~~~A~q~kmdLHDLaEdLP~~w-~~i~~vA~~tyda~~~l~~ak 58 (71)
T 2js5_A 15 LNAQATALKMDLHDLAEDLPTGW-NRIMEVAEKTYEAYRQLDEFR 58 (71)
T ss_dssp HHHHHHHHHHHHHHHHHSTTTSG-GGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHhccchhhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999988854 489999999999999998763
No 7
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=48.22 E-value=79 Score=28.54 Aligned_cols=106 Identities=10% Similarity=0.138 Sum_probs=55.5
Q ss_pred eeecCCCCHHHH--HHHHHHHHHhHHHH--HHhhh---hcChHHHHHHHhhchhhhHHHHHHHhhcCCCCChHHHHHHHH
Q 030036 73 RMVAPDQTVEQA--ESGIRYHAQSLLHV--KALLE---SESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYS 145 (184)
Q Consensus 73 rf~~ppl~~~eA--~~RIke~A~~L~~l--k~lId---kksW~~Vrn~LRlka~~Lr~DL~~lIss~P~d~Kk~l~~La~ 145 (184)
=|-+||..|+.- +.|+.+.-..+.++ .-.|. --+|.|..++|+.=-+- ++..+-.-.|.+.+..++.|-.
T Consensus 332 cf~ipppd~eai~~a~~l~~~~~~~~~lw~~~~~~~~~~~~~~~~~~d~~~i~~w---~~~~~~~~~~~~~~~~~~~l~~ 408 (450)
T 3r6n_A 332 GLIIPPPNPLAVDLSCKIEQYYEAILALWNQLYINMKSLVSWHYCMIDIEKIRAM---TIAKLKTMRQEDYMKTIADLEL 408 (450)
T ss_dssp GEECCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---CHHHHTTSCTTTHHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhcCHHHHHHHHHHHHH
Confidence 588899888632 45566665665554 11122 33588888887754443 2233333356667777777765
Q ss_pred hHhhchHhHHHHH--hcCChHHHHHHHHHHHHHHHHHH
Q 030036 146 DLFNGVTKLDYAA--RDKDVSRVHQCYENVVVALDSIL 181 (184)
Q Consensus 146 ~LF~~le~LD~AA--r~Kn~~~A~~~Y~~tv~~LdevL 181 (184)
.+=+.+.+.+..- ...|--+.+..|..+..-+++++
T Consensus 409 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (450)
T 3r6n_A 409 HYQEFIRNSQGSEMFGDDDKRKIQSQFTDAQKHYQTLV 446 (450)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444443221 00122334444555544444444
No 8
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=44.64 E-value=41 Score=23.72 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=30.2
Q ss_pred HhhchHhHHHHHhcCChHHHHHHHHHHHHHHHHHHhhC
Q 030036 147 LFNGVTKLDYAARDKDVSRVHQCYENVVVALDSILSRL 184 (184)
Q Consensus 147 LF~~le~LD~AAr~Kn~~~A~~~Y~~tv~~LdevLa~i 184 (184)
+-+++..==..|..+|...|..||+.+++.|+.++.-+
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~ 49 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSV 49 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555567889999999999999999999988643
No 9
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=44.15 E-value=35 Score=24.61 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=38.4
Q ss_pred HhhchhhhHHHHHHHhhcCCCCChHHHHHHHHhHhhchHhHHHHH
Q 030036 114 LRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAA 158 (184)
Q Consensus 114 LRlka~~Lr~DL~~lIss~P~d~Kk~l~~La~~LF~~le~LD~AA 158 (184)
|..+++.+..||-.|..-||-+= ..+-.+|.+.|+-+.+||.|=
T Consensus 27 L~~~A~q~kmdLHDLaEdLP~~w-~~i~~vA~~tyda~~~l~~ak 70 (81)
T 3csx_A 27 LNSKAGQMKMDLHDLAEGLPTDY-ENLVETAEKTYEIFRELDQLK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTG-GGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchhhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999988854 489999999999999998863
No 10
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=35.66 E-value=74 Score=22.47 Aligned_cols=43 Identities=14% Similarity=0.198 Sum_probs=34.0
Q ss_pred ChHHHHHHHHhHhhchHhHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 030036 136 ERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSIL 181 (184)
Q Consensus 136 ~Kk~l~~La~~LF~~le~LD~AAr~Kn~~~A~~~Y~~tv~~LdevL 181 (184)
-++.+.+-|.+++..=.+.|.+ ++..+|..+|.+++..|-.++
T Consensus 7 ~~~~~l~~Ai~lv~~Ave~D~~---g~y~eAl~~Y~~Aie~l~~al 49 (93)
T 1wfd_A 7 GQDSDSTAAVAVLKRAVELDAE---SRYQQALVCYQEGIDMLLQVL 49 (93)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHH
Confidence 3446667777777777777866 999999999999999887765
No 11
>3r8n_T 30S ribosomal protein S20; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_T 3fih_T* 3j18_T* 2wwl_T 3oar_T 3oaq_T 3ofb_T 3ofa_T 3ofp_T 3ofx_T 3ofy_T 3ofo_T 3r8o_T 4a2i_T 4gd1_T 4gd2_T 2qal_T* 1p6g_T 1p87_T 2aw7_T ...
Probab=35.63 E-value=58 Score=23.30 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=25.9
Q ss_pred hHhHHHHHhcCChHHHHHHHHHHHHHHHHHHh
Q 030036 151 VTKLDYAARDKDVSRVHQCYENVVVALDSILS 182 (184)
Q Consensus 151 le~LD~AAr~Kn~~~A~~~Y~~tv~~LdevLa 182 (184)
+-++..|+..+|..+|+..|..+...||...+
T Consensus 30 iKk~~~Ai~~gd~~~A~~~l~~a~~~iDkaa~ 61 (85)
T 3r8n_T 30 IKKVYAAIEAGDKAAAQKAFNEMQPIVDRQAA 61 (85)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 44566788888999999999999999987654
No 12
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=32.44 E-value=96 Score=22.29 Aligned_cols=54 Identities=11% Similarity=0.156 Sum_probs=38.4
Q ss_pred hHHHHHHHhhchhhhHHHHHHHhhcCCCCChHHHHHHHHhHhhchHhHHHHHhc
Q 030036 107 WSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARD 160 (184)
Q Consensus 107 W~~Vrn~LRlka~~Lr~DL~~lIss~P~d~Kk~l~~La~~LF~~le~LD~AAr~ 160 (184)
...|.++++-....|+.-++.--.+-.+..++++.....+|=..+++|+.++..
T Consensus 8 F~~V~~D~~~ql~~l~~~~~~~~~~~~~~~~~El~~~l~el~e~l~DL~~SI~i 61 (95)
T 2c5k_T 8 FQQVVKDTKEQLNRINNYITRHNTAGDDDQEEEIQDILKDVEETIVDLDRSIIV 61 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777766544211111468889999999999999999999865
No 13
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=31.42 E-value=1.5e+02 Score=22.23 Aligned_cols=30 Identities=17% Similarity=0.077 Sum_probs=18.6
Q ss_pred ecCCCCH-HHHHHHHHHHHHhHH-HHHHhhhh
Q 030036 75 VAPDQTV-EQAESGIRYHAQSLL-HVKALLES 104 (184)
Q Consensus 75 ~~ppl~~-~eA~~RIke~A~~L~-~lk~lIdk 104 (184)
=+||.+| -.++..|.....+|. .+..|..+
T Consensus 21 ~~~~~~p~~~~I~~I~~eV~~L~~qV~~f~g~ 52 (111)
T 1uk5_A 21 ETPPKHPGVLKVEAILEKVQGLEQAVDSFEGK 52 (111)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3577788 666777776666664 34555443
No 14
>3c0f_B Uncharacterized protein AF_1514; hot DOG fold, sulphur SAD, methylated, unknown function; HET: MLY; 1.80A {Archaeoglobus fulgidus dsm 4304}
Probab=31.05 E-value=10 Score=27.92 Aligned_cols=13 Identities=15% Similarity=0.529 Sum_probs=10.6
Q ss_pred CcceeeecCcccc
Q 030036 16 YPTFMCYQQPAFR 28 (184)
Q Consensus 16 ~~~~~~~~~~~~~ 28 (184)
.|.++||-||++.
T Consensus 48 sP~v~Cc~ep~W~ 60 (91)
T 3c0f_B 48 APEVYCCGEKPWE 60 (91)
T ss_dssp ESCCCSSSSSHHH
T ss_pred CCceEecCCCcee
Confidence 4899999888764
No 15
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=29.75 E-value=16 Score=24.70 Aligned_cols=50 Identities=24% Similarity=0.291 Sum_probs=35.7
Q ss_pred hhhhcChHHHHHHHhhchhhhHHHHHHHhhcCCCCCh--HHHHHHHHhHhhc
Q 030036 101 LLESESWSEVQKALRASSASLKQDIYTLINNKPATER--PQLRKLYSDLFNG 150 (184)
Q Consensus 101 lIdkksW~~Vrn~LRlka~~Lr~DL~~lIss~P~d~K--k~l~~La~~LF~~ 150 (184)
-|+.++-.++=-.||-....|++|...+-.++..++| +.+..+-+++..+
T Consensus 2 ~veEKSlVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k~ 53 (56)
T 2w6b_A 2 PLGSKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKN 53 (56)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3667777888888999999999999999999877644 4455555555443
No 16
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}
Probab=29.28 E-value=18 Score=28.08 Aligned_cols=22 Identities=9% Similarity=0.261 Sum_probs=19.2
Q ss_pred ceeeecCccccccCCCcccccc
Q 030036 18 TFMCYQQPAFRSKGMPQNVLQC 39 (184)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~ 39 (184)
.|.++|+|||..+.-|+.+...
T Consensus 39 ~F~F~~~PYyLRL~LP~~V~e~ 60 (134)
T 2k8q_A 39 MIIFHLSPYYLRLRFPHELIDD 60 (134)
T ss_dssp SEEECSSSSCEEECCSSCEECC
T ss_pred EEEEecCCeEEEecCCCeeecC
Confidence 5899999999999999988644
No 17
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=29.19 E-value=1.6e+02 Score=21.23 Aligned_cols=29 Identities=3% Similarity=0.147 Sum_probs=22.3
Q ss_pred HHHHHHhHHHHHHhhhhcChHHHHHHHhh
Q 030036 88 IRYHAQSLLHVKALLESESWSEVQKALRA 116 (184)
Q Consensus 88 Ike~A~~L~~lk~lIdkksW~~Vrn~LRl 116 (184)
+.+..+++..++..++.++|..+....|.
T Consensus 30 l~~~~~~~~~l~~a~~~~d~~~l~~~aHk 58 (119)
T 3myf_A 30 LDSLPETVEKIQTALGQNDQATMLSTIHK 58 (119)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445566778888999999999988775
No 18
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=28.39 E-value=1.4e+02 Score=21.83 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=22.2
Q ss_pred HHHHHHhHHHHHHhhhhcChHHHHHHHhh
Q 030036 88 IRYHAQSLLHVKALLESESWSEVQKALRA 116 (184)
Q Consensus 88 Ike~A~~L~~lk~lIdkksW~~Vrn~LRl 116 (184)
+.+..+++..++..++.++|..+....|.
T Consensus 39 l~~~~~~~~~l~~a~~~~d~~~l~~~aHk 67 (123)
T 3iqt_A 39 LDFLPEVRNKVEEQLVGENPEGLVDLIHK 67 (123)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455566778888999999999888775
No 19
>2vqe_T 30S ribosomal protein S20; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.7.6.1 PDB: 1gix_W* 1hnw_T* 1hnx_T* 1hnz_T* 1hr0_T 1j5e_T 1jgo_W* 1jgp_W* 1jgq_W* 1ml5_W* 1yl4_W 2b64_T* 2b9m_T* 2b9o_T* 2f4v_T* 2ow8_u* 2qnh_u* 2uxb_T* 1fjg_T* 2uxd_T* ...
Probab=27.02 E-value=91 Score=23.26 Aligned_cols=32 Identities=9% Similarity=0.037 Sum_probs=24.1
Q ss_pred hHhHHHHHhcCChHHHHHHHHHHHHHHHHHHh
Q 030036 151 VTKLDYAARDKDVSRVHQCYENVVVALDSILS 182 (184)
Q Consensus 151 le~LD~AAr~Kn~~~A~~~Y~~tv~~LdevLa 182 (184)
+-++..|+..+|...|+..|..+.+.||...+
T Consensus 37 iKkv~~Ai~~gdk~~A~~~l~~a~s~iDkaa~ 68 (106)
T 2vqe_T 37 SKKAVQLAQEGKAEEALKIMRKAESLIDKAAK 68 (106)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 44556677778888888888888888887654
No 20
>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4
Probab=26.70 E-value=1.8e+02 Score=21.03 Aligned_cols=72 Identities=7% Similarity=0.045 Sum_probs=43.1
Q ss_pred HHHHHhHHHHHHhhhhcChHHHHHHHhhchhhhHHHHHHHhhcCCCCChHHHHHHHHhHhhchHhHHHHHhcCChHHHHH
Q 030036 89 RYHAQSLLHVKALLESESWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQ 168 (184)
Q Consensus 89 ke~A~~L~~lk~lIdkksW~~Vrn~LRlka~~Lr~DL~~lIss~P~d~Kk~l~~La~~LF~~le~LD~AAr~Kn~~~A~~ 168 (184)
.+..+++..++..++.++|..+....|.=-|-. .++.- ..|.+-...|..+++.++..+...
T Consensus 42 ~s~~~Dl~~L~~A~~~~D~~~l~~~aHrLKGaa--------~~lG~----------~~L~~lc~~LE~~~~~~~~~~l~~ 103 (116)
T 1sr2_A 42 DTVPDDVKRLYTEAATSDFAALAQTAHRLKGVF--------AMLNL----------VPGKQLCETLEHLIREKDVPGIEK 103 (116)
T ss_dssp TTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------HHHTC----------HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------HHcCH----------HHHHHHHHHHHHHHHcCCHHHHHH
Confidence 345667778888999999999998888643322 22211 122333444566778887776655
Q ss_pred HHHHHHHHHH
Q 030036 169 CYENVVVALD 178 (184)
Q Consensus 169 ~Y~~tv~~Ld 178 (184)
.+++.-..++
T Consensus 104 ~i~~L~~~l~ 113 (116)
T 1sr2_A 104 YISDIDSYVK 113 (116)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 21
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=26.03 E-value=52 Score=24.40 Aligned_cols=28 Identities=14% Similarity=0.383 Sum_probs=22.0
Q ss_pred HHhHHHHHHhhhhcChHHHHHHHhhchh
Q 030036 92 AQSLLHVKALLESESWSEVQKALRASSA 119 (184)
Q Consensus 92 A~~L~~lk~lIdkksW~~Vrn~LRlka~ 119 (184)
-++|..+++-+++.+|...+..|---+.
T Consensus 66 feemdelreavekedwenlrdelldvan 93 (114)
T 2p06_A 66 FEEMDELREAVEKEDWENLRDELLDVAN 93 (114)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999998877654433
No 22
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=24.49 E-value=21 Score=27.31 Aligned_cols=21 Identities=10% Similarity=0.324 Sum_probs=17.8
Q ss_pred ceeeecCccccccCCCccccc
Q 030036 18 TFMCYQQPAFRSKGMPQNVLQ 38 (184)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~ 38 (184)
.|+.+|+|||..+.-|+++..
T Consensus 53 ~F~F~~~PYyLRL~lP~~vve 73 (115)
T 3eud_A 53 MIIFHLSPYYLRLRFPHELID 73 (115)
T ss_dssp EEEEEETTEEEEEECSSCEEC
T ss_pred EEEEecCCeEEEEecCcceec
Confidence 589999999999998877653
No 23
>2j8w_A Cytochrome C'; heme, iron, transport, metal-binding, electron transfer, electron transport; HET: HEM; 1.29A {Rubrivivax gelatinosus} SCOP: a.24.3.2 PDB: 1jaf_A* 2j9b_A*
Probab=22.48 E-value=1.4e+02 Score=21.74 Aligned_cols=40 Identities=15% Similarity=0.207 Sum_probs=34.3
Q ss_pred ChHHHHHHHHhHhhchHhHHHHHhcCChHHHHHHHHHHHH
Q 030036 136 ERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVV 175 (184)
Q Consensus 136 ~Kk~l~~La~~LF~~le~LD~AAr~Kn~~~A~~~Y~~tv~ 175 (184)
++...+.++.+|-...++|-.|+..+|.......+..+..
T Consensus 78 ~~~~F~~~~~~~~~aa~~L~~aA~~~D~~~~~~a~~~v~~ 117 (129)
T 2j8w_A 78 DAAGFKAAADKFAAAVDKLDAAGKTGDFAQIKAAVGETGG 117 (129)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4567999999999999999999999998888777776654
No 24
>2ykz_A Cytochrome C'; electron transport, haemoprotein, 4-helix bundle; HET: PCA HEC; 0.84A {Achromobacter xylosoxidans} PDB: 3zqv_A* 2xlm_A* 1e83_A* 1e84_A* 1e86_A* 1e85_A* 2yld_A* 2yli_A* 1cgo_A* 2xle_A* 2xm0_A* 2xlw_A* 2xld_A* 2xm4_A* 2xlo_A* 2yl0_A* 2yl1_A* 2ylg_A* 3zqy_A* 2xl6_A* ...
Probab=21.97 E-value=1.5e+02 Score=21.56 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=34.5
Q ss_pred ChHHHHHHHHhHhhchHhHHHHHhcCChHHHHHHHHHHHH
Q 030036 136 ERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVV 175 (184)
Q Consensus 136 ~Kk~l~~La~~LF~~le~LD~AAr~Kn~~~A~~~Y~~tv~ 175 (184)
++...+.++.+|-...++|-.|+.++|.......+..+..
T Consensus 75 ~~~~F~~~~~~~~~aa~~l~~aA~~gD~~~~~~a~~~v~~ 114 (127)
T 2ykz_A 75 DAASFKQKQQAFQDNIVKLSAAADAGDLDKLRAAFGDVGA 114 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999998888777766544
No 25
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=21.65 E-value=2.5e+02 Score=20.80 Aligned_cols=73 Identities=10% Similarity=0.050 Sum_probs=39.4
Q ss_pred HHHhHHHHHHhhhhc--ChHHHHHHHhhchhhhHHHHHHHhhcCCCCChHHHHHHHHhHhhchHhHHHHHhcCChHHHHH
Q 030036 91 HAQSLLHVKALLESE--SWSEVQKALRASSASLKQDIYTLINNKPATERPQLRKLYSDLFNGVTKLDYAARDKDVSRVHQ 168 (184)
Q Consensus 91 ~A~~L~~lk~lIdkk--sW~~Vrn~LRlka~~Lr~DL~~lIss~P~d~Kk~l~~La~~LF~~le~LD~AAr~Kn~~~A~~ 168 (184)
+.+.|..|+..++.+ +|..+....|. |+....++. +.+|.+--.+|..+++.++...+..
T Consensus 54 ~~~~l~~L~~Al~~~~~D~~~l~~~aH~--------LKGssa~lG----------a~~l~~~c~~lE~~~~~~~~~~~~~ 115 (149)
T 1yvi_A 54 ADRIINEIATLLEQPVVNFDKVDAYVHQ--------LKGSSASVG----------AQKVKFTCMQFRQFCQDKSRDGCLM 115 (149)
T ss_dssp HHHHHHHHHHHHTSSSCCHHHHHHHHHH--------HHHHHHHHT----------CHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccHHHHHHHHHH--------HHhHHHHHh----------HHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 333455666666665 57666655542 111222221 2344555566777888888776666
Q ss_pred HHHHHHHHHHHHH
Q 030036 169 CYENVVVALDSIL 181 (184)
Q Consensus 169 ~Y~~tv~~LdevL 181 (184)
.+++....++.+.
T Consensus 116 ~l~~l~~e~~~~~ 128 (149)
T 1yvi_A 116 ALAVVRNDFYDLR 128 (149)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6555555554443
No 26
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=20.43 E-value=2.4e+02 Score=20.68 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=26.9
Q ss_pred HHHHHhHhhchHhHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 030036 141 RKLYSDLFNGVTKLDYAARDKDVSRVHQCYENVVVALDSIL 181 (184)
Q Consensus 141 ~~La~~LF~~le~LD~AAr~Kn~~~A~~~Y~~tv~~LdevL 181 (184)
.+-|..|+..=.+.|.+ ++..+|..+|.+++..|-.++
T Consensus 15 l~kAi~lv~~Ave~D~a---g~y~eAl~lY~~Aie~l~~al 52 (117)
T 2cpt_A 15 LQKAIDLASKAAQEDKA---GNYEEALQLYQHAVQYFLHVV 52 (117)
T ss_dssp HHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHHHHHHH
Confidence 33444444444566665 899999999999998887665
No 27
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=20.07 E-value=89 Score=22.45 Aligned_cols=25 Identities=8% Similarity=0.123 Sum_probs=14.1
Q ss_pred HHHHHHHhhc-----CCCCChHHHHHHHHh
Q 030036 122 KQDIYTLINN-----KPATERPQLRKLYSD 146 (184)
Q Consensus 122 r~DL~~lIss-----~P~d~Kk~l~~La~~ 146 (184)
.+.|-..|+. +|.++|.++++.++.
T Consensus 55 L~aL~gAi~G~~w~~l~~~~K~~L~~~~~~ 84 (93)
T 3mab_A 55 LYALEGAVQGIRWHGLDEAKKIELKKFHQS 84 (93)
T ss_dssp HHHHHHHHHTSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHCCHHHHHHHHHHHHH
Confidence 4445555444 566677777665443
Done!