BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030037
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 209 bits (533), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 98/155 (63%), Positives = 127/155 (81%), Gaps = 4/155 (2%)
Query: 1 MSSPS---KRRDMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPD 57
MSSPS +R D DV+KL+ S + V TI GLNEF V+F+GP+ + YEGGVWK+RV+LPD
Sbjct: 20 MSSPSPGKRRMDTDVIKLIESKHEV-TILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPD 78
Query: 58 AYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPS 117
YP+KSPSIGF+NKI+HPN+DE SG+VCLDVINQ+W+ ++DL NIFESFLPQLL YPNP
Sbjct: 79 KYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPI 138
Query: 118 DPLNGDAASLMMKDRKQYDQKVKEYCERYAKKENI 152
DPLNGDAA++ + ++Y QK+KEY ++YA +E +
Sbjct: 139 DPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEEAL 173
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 201 bits (511), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 89/144 (61%), Positives = 114/144 (79%)
Query: 7 RRDMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSI 66
R+ D KL+M+ Y++E N +F+V FHGP + YEGG+WK+ V LPD YP+ SPSI
Sbjct: 6 RKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSI 65
Query: 67 GFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAAS 126
GF+NK+ HPNVDE SGSVCLDVINQ+W+P++ L+N+FE FLPQLL YPNPSDPLN DAAS
Sbjct: 66 GFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAAS 125
Query: 127 LMMKDRKQYDQKVKEYCERYAKKE 150
L+MKD+ Y++KVKEY + YA K+
Sbjct: 126 LLMKDKNIYEEKVKEYVKLYASKD 149
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 170 bits (430), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 82/151 (54%), Positives = 106/151 (70%), Gaps = 1/151 (0%)
Query: 5 SKRRDMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSP 64
++RR+MD M+L S V +D + EF VEF GP+ + YE G W + V+LP YP+KSP
Sbjct: 14 NRRREMDYMRLCNSTRKVYP-SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSP 72
Query: 65 SIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDA 124
SIGF N+I HPNVDE SGSVCLDVINQ+W+PM+ L NIF+ FLPQLL YPNPSDPLN A
Sbjct: 73 SIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQA 132
Query: 125 ASLMMKDRKQYDQKVKEYCERYAKKENIVNS 155
A L+ DR +D ++E+ +A + + S
Sbjct: 133 AHLLHADRVGFDALLREHVSTHATPQKALES 163
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 89/153 (58%), Gaps = 5/153 (3%)
Query: 1 MSSPSKRRDMDVMKLM---MSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPD 57
M+S KR + KL+ + E +D L F V GP++S YE G++++ + LPD
Sbjct: 1 MASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 58 AYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPS 117
YP ++P + F+ KIYHPN+D + G +CLDV+ +WSP + + S + LL PNP+
Sbjct: 61 DYPMEAPKVRFLTKIYHPNIDRL-GRICLDVLKTNWSPALQIRTVLLS-IQALLASPNPN 118
Query: 118 DPLNGDAASLMMKDRKQYDQKVKEYCERYAKKE 150
DPL D A +K+ + K +E+ + YAKK+
Sbjct: 119 DPLANDVAEDWIKNEQGAKAKAREWTKLYAKKK 151
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 106 bits (264), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 79/130 (60%), Gaps = 2/130 (1%)
Query: 21 NVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEM 80
E +D L F V GP++S YE G++++ + LPD YP ++P + F+ KIYHPN+D +
Sbjct: 26 TAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRL 85
Query: 81 SGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVK 140
G +CLDV+ +WSP + + S + LL PNP+DPL D A +K+ + K +
Sbjct: 86 -GRICLDVLKTNWSPALQIRTVLLS-IQALLASPNPNDPLANDVAEDWIKNEQGAKAKAR 143
Query: 141 EYCERYAKKE 150
E+ + YAKK+
Sbjct: 144 EWTKLYAKKK 153
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 103 bits (257), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 88/153 (57%), Gaps = 5/153 (3%)
Query: 1 MSSPSKRRDMDVMKLM---MSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPD 57
M+S KR + KL+ + E +D L F V GP++S YE G++++ + LPD
Sbjct: 1 MASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 58 AYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPS 117
YP ++P + F+ KIYHPN+D + G + LDV+ +WSP + + S + LL PNP+
Sbjct: 61 DYPMEAPKVRFLTKIYHPNIDRL-GRISLDVLKTNWSPALQIRTVLLS-IQALLASPNPN 118
Query: 118 DPLNGDAASLMMKDRKQYDQKVKEYCERYAKKE 150
DPL D A +K+ + K +E+ + YAKK+
Sbjct: 119 DPLANDVAEDWIKNEQGAKAKAREWTKLYAKKK 151
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 103 bits (257), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 25 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
+ D L + GP +S Y+GGV+ + V P YP+K P I F KIYHPN++ +GS+
Sbjct: 44 VGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS-NGSI 102
Query: 85 CLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCE 144
CLD++ WSP + + S LL PNP DPL D A + D+++Y++ +E+ +
Sbjct: 103 CLDILRSQWSPALTVSKVLLSIC-SLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQ 161
Query: 145 RYA 147
+YA
Sbjct: 162 KYA 164
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 103 bits (256), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 25 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
+ D L + GP +S Y+GGV+ + V P YP+K P I F KIYHPN++ +GS+
Sbjct: 28 VGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS-NGSI 86
Query: 85 CLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCE 144
CLD++ WSP + + S LL PNP DPL D A + D+++Y++ +E+ +
Sbjct: 87 CLDILRSQWSPALTVSKVLLSIC-SLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQ 145
Query: 145 RYA 147
+YA
Sbjct: 146 KYA 148
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 103 bits (256), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 25 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
+ D L + GP +S Y+GGV+ + V P YP+K P I F KIYHPN++ +GS+
Sbjct: 32 VGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS-NGSI 90
Query: 85 CLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCE 144
CLD++ WSP + + S LL PNP DPL D A + D+++Y++ +E+ +
Sbjct: 91 CLDILRSQWSPALTVSKVLLSIC-SLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQ 149
Query: 145 RYA 147
+YA
Sbjct: 150 KYA 152
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 102 bits (255), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 25 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
+ D L + GP ES Y+GGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 29 VGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 87
Query: 85 CLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCE 144
CLD++ WSP + + S LL PNP DPL + A + DR++Y+Q +E+ +
Sbjct: 88 CLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQ 146
Query: 145 RYA 147
+YA
Sbjct: 147 KYA 149
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 88/149 (59%), Gaps = 6/149 (4%)
Query: 1 MSSPSKRRDMDVMKLMMSD----YNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELP 56
M++PS+RR M K + D + D + + GP+E+ +E G +K+ +E
Sbjct: 1 MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 57 DAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNP 116
+ YP K P++ F++K++HPNV GS+CLD++ WSP +D+ I S + LL PNP
Sbjct: 61 EEYPNKPPTVKFISKMFHPNV-YADGSICLDILQNRWSPTYDVAAILTS-IQSLLDEPNP 118
Query: 117 SDPLNGDAASLMMKDRKQYDQKVKEYCER 145
+ P N AA L ++R++Y+++V++ E+
Sbjct: 119 NSPANSLAAQLYQENRREYEKRVQQIVEQ 147
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 88/149 (59%), Gaps = 6/149 (4%)
Query: 1 MSSPSKRRDMDVMKLMMSD----YNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELP 56
M++PS+RR M K + D + D + + GP+E+ +E G +K+ +E
Sbjct: 4 MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 63
Query: 57 DAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNP 116
+ YP K P++ F++K++HPNV GS+CLD++ WSP +D+ I S + LL PNP
Sbjct: 64 EEYPNKPPTVKFISKMFHPNV-YADGSICLDILQNRWSPTYDVAAILTS-IQSLLDEPNP 121
Query: 117 SDPLNGDAASLMMKDRKQYDQKVKEYCER 145
+ P N AA L ++R++Y+++V++ E+
Sbjct: 122 NSPANSLAAQLYQENRREYEKRVQQIVEQ 150
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 87/153 (56%), Gaps = 5/153 (3%)
Query: 1 MSSPSKRRDMDVMKLM---MSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPD 57
M+S KR + KL+ + E +D L F V GP++S YE G++++ + LPD
Sbjct: 1 MASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPD 60
Query: 58 AYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPS 117
YP ++P + F+ KIYHP +D + G + LDV+ +WSP + + S + LL PNP+
Sbjct: 61 DYPMEAPKVRFLTKIYHPAIDRL-GRISLDVLKTNWSPALQIRTVLLS-IQALLASPNPN 118
Query: 118 DPLNGDAASLMMKDRKQYDQKVKEYCERYAKKE 150
DPL D A +K+ + K +E+ + YAKK+
Sbjct: 119 DPLANDVAEDWIKNEQGAKAKAREWTKLYAKKK 151
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
+ D + + GP++S Y GGV+ + + P YP+K P + F KIYHPN++ G++
Sbjct: 46 VGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINS-QGAI 104
Query: 85 CLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCE 144
CLD++ WSP + + S + LL PNP DPL + A L DR +YDQ +E+ +
Sbjct: 105 CLDILKDQWSPALTISKVLLS-ISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQ 163
Query: 145 RYA 147
+YA
Sbjct: 164 KYA 166
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 25 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
+ D L + GP +S Y+GGV+ + + P YP+K P + F KIYHPN++ +GS+
Sbjct: 31 VGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINS-NGSI 89
Query: 85 CLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCE 144
CLD++ WSP + + S LL PNP DPL D A + D+++Y++ +E+ +
Sbjct: 90 CLDILRSQWSPALTVSKVLLSIC-SLLCDPNPDDPLVPDIAHIYKSDKEKYNRLAREWTQ 148
Query: 145 RYA 147
+YA
Sbjct: 149 KYA 151
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 100 bits (248), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 25 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
+ D + + GP +S Y+GGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 36 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 94
Query: 85 CLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCE 144
CLD++ WSP + + S LL PNP DPL + A + DR++Y++ +E+ +
Sbjct: 95 CLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYQTDREKYNRIAREWTQ 153
Query: 145 RYA 147
+YA
Sbjct: 154 KYA 156
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 77/124 (62%), Gaps = 2/124 (1%)
Query: 25 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
+ D + + GP +S Y+GG++ + V P YP+K+P + F+ K+YHPN+++ +G +
Sbjct: 29 VGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINK-NGVI 87
Query: 85 CLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCE 144
CLD++ WSP L + S + LL PNPSDPL+ + A+++ ++KQ++ +E+
Sbjct: 88 CLDILKDQWSPALTLSRVLLS-ISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTR 146
Query: 145 RYAK 148
YA+
Sbjct: 147 MYAR 150
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 99.4 bits (246), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 25 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
+ D + + GP +S Y+GGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 44 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 102
Query: 85 CLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCE 144
CLD++ WSP + + S LL PNP DPL + A + DR++Y++ +E+ +
Sbjct: 103 CLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 161
Query: 145 RYA 147
+YA
Sbjct: 162 KYA 164
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 25 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
+ D + + GP +S Y+GGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 28 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 86
Query: 85 CLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCE 144
CLD++ WSP + + S LL PNP DPL + A + DR++Y++ +E+ +
Sbjct: 87 CLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 145
Query: 145 RYA 147
+YA
Sbjct: 146 KYA 148
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 25 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
+ D + + GP +S Y+GGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 26 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 84
Query: 85 CLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCE 144
CLD++ WSP + + S LL PNP DPL + A + DR++Y++ +E+ +
Sbjct: 85 CLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 143
Query: 145 RYA 147
+YA
Sbjct: 144 KYA 146
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 25 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
+ D + + GP +S Y+GGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 31 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 89
Query: 85 CLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCE 144
CLD++ WSP + + S LL PNP DPL + A + DR++Y++ +E+ +
Sbjct: 90 CLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 148
Query: 145 RYA 147
+YA
Sbjct: 149 KYA 151
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 25 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
+ D + + GP +S Y+GGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 28 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 86
Query: 85 CLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCE 144
CLD++ WSP + + S LL PNP DPL + A + DR++Y++ +E+ +
Sbjct: 87 CLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 145
Query: 145 RYA 147
+YA
Sbjct: 146 KYA 148
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 25 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
+ D + + GP +S Y+GGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 28 VGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 86
Query: 85 CLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCE 144
CLD++ WSP + + S LL PNP DPL + A + DR++Y++ +E+ +
Sbjct: 87 CLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 145
Query: 145 RYA 147
+YA
Sbjct: 146 KYA 148
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
+ D L + GP +S Y+GGV+ + V P YP+K P I F KIYHPN++ +GS+
Sbjct: 32 VGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINS-NGSI 90
Query: 85 CLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCE 144
LD++ WSP + + S LL PNP DPL D A + D+++Y++ +E+ +
Sbjct: 91 KLDILRSQWSPALTVSKVLLSIC-SLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQ 149
Query: 145 RYA 147
+YA
Sbjct: 150 KYA 152
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
+ D + + GP +S Y+GGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 28 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 86
Query: 85 CLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCE 144
CLD + WSP + + S LL PNP DPL + A + DR++Y++ +E+ +
Sbjct: 87 CLDALRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 145
Query: 145 RYA 147
+YA
Sbjct: 146 KYA 148
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 88/149 (59%), Gaps = 6/149 (4%)
Query: 1 MSSPSKRRDMDVMKLMMSDYNVETIN----DGLNEFNVEFHGPKESLYEGGVWKIRVELP 56
MS+P++RR M K + D V + + ++N GP+ + +E G +K+ +E
Sbjct: 1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS 60
Query: 57 DAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNP 116
+ YP K P++ F++K++HPNV GS+CLD++ WSP +D+ +I S + LL PNP
Sbjct: 61 EEYPNKPPTVRFLSKMFHPNV-YADGSICLDILQNRWSPTYDVSSILTS-IQSLLDEPNP 118
Query: 117 SDPLNGDAASLMMKDRKQYDQKVKEYCER 145
+ P N AA L +++++Y+++V E+
Sbjct: 119 NSPANSQAAQLYQENKREYEKRVSAIVEQ 147
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
+ D + + GP +S Y+GGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 36 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 94
Query: 85 CLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCE 144
CLD++ WSP + + S LL PNP DPL + A + DR +Y++ +E+ +
Sbjct: 95 CLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQ 153
Query: 145 RYA 147
+YA
Sbjct: 154 KYA 156
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
+ D + + GP +S Y+GGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 25 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 83
Query: 85 CLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCE 144
CLD++ WSP + + S LL PNP DPL + A + DR +Y++ +E+ +
Sbjct: 84 CLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQ 142
Query: 145 RYA 147
+YA
Sbjct: 143 KYA 145
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
+ D + + GP +S Y+GGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 28 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 86
Query: 85 CLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCE 144
CLD++ WSP + + S LL PNP DPL + A + DR +Y++ +E+ +
Sbjct: 87 CLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQ 145
Query: 145 RYA 147
+YA
Sbjct: 146 KYA 148
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
+ D + + GP +S Y+GGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 28 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 86
Query: 85 CLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCE 144
CLD++ W P + + S LL PNP DPL + A + DR++Y++ +E+ +
Sbjct: 87 CLDILRSQWGPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 145
Query: 145 RYA 147
+YA
Sbjct: 146 KYA 148
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
+ D + + GP +S Y+GGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 34 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 92
Query: 85 CLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCE 144
CLD++ WSP + + S LL PNP DPL + A + DR +Y++ +E+ +
Sbjct: 93 CLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQ 151
Query: 145 RYA 147
+YA
Sbjct: 152 KYA 154
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 75/141 (53%), Gaps = 2/141 (1%)
Query: 7 RRDMDVMKLMMSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSI 66
R D+ K S + + D L + GP +S Y GGV+ + + P YP+K P +
Sbjct: 8 RELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKV 67
Query: 67 GFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAAS 126
F +IYHPN++ +GS+CLD++ WSP + + S + LL PNP DPL + A
Sbjct: 68 NFTTRIYHPNINS-NGSICLDILRDQWSPALTISKVLLS-ISSLLTDPNPDDPLVPEIAH 125
Query: 127 LMMKDRKQYDQKVKEYCERYA 147
+ DR +Y+ +E+ +YA
Sbjct: 126 VYKTDRSRYELSAREWTRKYA 146
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 96.3 bits (238), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 86/149 (57%), Gaps = 6/149 (4%)
Query: 1 MSSPSKRRDMDVMKLMMSD----YNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELP 56
MS+P++RR M K M D + + D + +N GP ++ YE G +++ +E
Sbjct: 1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFD 60
Query: 57 DAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNP 116
+ YP K P + F+++++HPNV +G +CLD++ W+P +D+ +I S + L PNP
Sbjct: 61 EEYPNKPPHVKFLSEMFHPNV-YANGEICLDILQNRWTPTYDVASILTS-IQSLFNDPNP 118
Query: 117 SDPLNGDAASLMMKDRKQYDQKVKEYCER 145
+ P N +AA+L + QY ++VKE E+
Sbjct: 119 ASPANVEAATLFKDHKSQYVKRVKETVEK 147
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 25 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
+ D L + GP +S Y GGV+ + + P YP+K P I F KIYHPN++ +G++
Sbjct: 27 VGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINA-NGNI 85
Query: 85 CLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCE 144
CLD++ WSP L + S LL NP DPL + A + DR +Y+ +E+ +
Sbjct: 86 CLDILKDQWSPALTLSKVLLSIC-SLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTK 144
Query: 145 RYA 147
+YA
Sbjct: 145 KYA 147
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 91/149 (61%), Gaps = 6/149 (4%)
Query: 1 MSSPSKRRDMDVMKLMMSD----YNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELP 56
MS+P+++R M K + D + ++ + +N GP ++ ++GG +K+ ++
Sbjct: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 57 DAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNP 116
+ YP K P++ FV++++HPN+ GS+CLD++ WSP++D+ I S + LL PNP
Sbjct: 61 EDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNP 118
Query: 117 SDPLNGDAASLMMKDRKQYDQKVKEYCER 145
+ P N +AA + + +++Y+++V++ E+
Sbjct: 119 NSPANSEAARMYSESKREYNRRVRDVVEQ 147
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
+ D + + GP +S Y+GGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 29 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 87
Query: 85 CLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCE 144
LD++ WSP + + S LL PNP DPL + A + DR++Y++ +E+ +
Sbjct: 88 SLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 146
Query: 145 RYA 147
+YA
Sbjct: 147 KYA 149
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
+ D + + GP +S Y+GGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 44 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 102
Query: 85 CLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCE 144
LD++ WSP + + S LL PNP DPL + A + DR++Y++ +E+ +
Sbjct: 103 XLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 161
Query: 145 RYA 147
+YA
Sbjct: 162 KYA 164
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 25 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
+ D + + GP +S Y+GGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 25 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 83
Query: 85 CLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCE 144
LD++ WSP + + S LL PNP DPL + A + DR++Y++ +E+ +
Sbjct: 84 SLDILRSQWSPALKISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 142
Query: 145 RYA 147
+YA
Sbjct: 143 KYA 145
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Query: 32 FNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQ 91
F+V GP++S +EGG +K+ + LP+ YP +P + F+ KIYHPNVD++ G +CLD++
Sbjct: 38 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL-GRICLDILKD 96
Query: 92 SWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYA 147
WSP + + S + LL PNP DPL D A + Q + + + YA
Sbjct: 97 KWSPALQIRTVLLS-IQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 151
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Query: 32 FNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQ 91
F+V GP++S +EGG +K+ + LP+ YP +P + F+ KIYHPNVD++ G +CLD++
Sbjct: 37 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL-GRICLDILKD 95
Query: 92 SWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYA 147
WSP + + S + LL PNP DPL D A + Q + + + YA
Sbjct: 96 KWSPALQIRTVLLS-IQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 150
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Query: 32 FNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQ 91
F+V GP++S +EGG +K+ + LP+ YP +P + F+ KIYHPNVD++ G +CLD++
Sbjct: 35 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL-GRICLDILKD 93
Query: 92 SWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYA 147
WSP + + S + LL PNP DPL D A + Q + + + YA
Sbjct: 94 KWSPALQIRTVLLS-IQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 25 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
+ D + + GP +S Y+GGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 28 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 86
Query: 85 CLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCE 144
LD++ WSP + + S + LL PNP DPL + A + DR++Y++ +E+ +
Sbjct: 87 SLDILRSQWSPALTISKVLLS-ICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 145
Query: 145 RYA 147
+YA
Sbjct: 146 KYA 148
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Query: 32 FNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQ 91
F+V GP++S +EGG +K+ + LP+ YP +P + F+ KIYHPNVD++ G +CLD++
Sbjct: 33 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL-GRICLDILKD 91
Query: 92 SWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYA 147
WSP + + S + LL PNP DPL D A + Q + + + YA
Sbjct: 92 KWSPALQIRTVLLS-IQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 146
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Query: 32 FNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQ 91
F+V GP++S +EGG +K+ + LP+ YP +P + F+ KIYHPNVD++ G +CLD++
Sbjct: 40 FHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL-GRICLDILKD 98
Query: 92 SWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYA 147
WSP + + S + LL PNP DPL D A + Q + + + YA
Sbjct: 99 KWSPALQIRTVLLS-IQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 153
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 25 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
+ D + + GP +S Y+GGV+ + + P YP+K P + F +IYHPN++ +GS+
Sbjct: 26 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS-NGSI 84
Query: 85 CLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCE 144
LD++ WSP + + S LL PNP DPL + A + DR +Y++ +E+ +
Sbjct: 85 SLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQ 143
Query: 145 RYA 147
+YA
Sbjct: 144 KYA 146
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 25 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
+ D + + GP +S Y+GGV+ + + P YP+K P + F +IYHP ++ +GS+
Sbjct: 26 VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINS-NGSI 84
Query: 85 CLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCE 144
LD++ WSP + + S LL PNP DPL + A + DR++Y++ +E+ +
Sbjct: 85 SLDILRSQWSPALTISKVLLSIC-SLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ 143
Query: 145 RYA 147
+YA
Sbjct: 144 KYA 146
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 70/119 (58%), Gaps = 1/119 (0%)
Query: 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDV 88
++ F GP + YEGG + + +E+P YP+K P + F K+YHPN+ ++G++CLD+
Sbjct: 31 IHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDI 90
Query: 89 INQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYA 147
+ +WSP+ L + S L LL P P+DP + + A ++DR+ +++ + YA
Sbjct: 91 LKNAWSPVITLKSALIS-LQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 148
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 69/114 (60%), Gaps = 1/114 (0%)
Query: 36 FHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSP 95
F GP + YEGG + + +E+P YP+K P + F K+YHPN+ ++G++CLD++ +WSP
Sbjct: 39 FLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSP 98
Query: 96 MFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKK 149
+ L + S L LL P P+DP + + A ++DR+ +++ + YA +
Sbjct: 99 VITLKSALIS-LQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASE 151
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 81/142 (57%), Gaps = 6/142 (4%)
Query: 3 SPSKRRDMDVMKLMMS-DYNVETINDGLNEFN--VEFHGPKESLYEGGVWKIRVELPDAY 59
S SKR ++ L+MS D + DG N F GPK+++YE +K+ +E P Y
Sbjct: 9 SVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDY 68
Query: 60 PYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDP 119
PYK P + F +HPNVD+ SG++CLD++ ++W+ +D+ I S L LL PN + P
Sbjct: 69 PYKPPVVKFTTPCWHPNVDQ-SGNICLDILKENWTASYDVRTILLS-LQSLLGEPNNASP 126
Query: 120 LNGDAASLMMKDRKQYDQKVKE 141
LN AA M ++ +Y + + E
Sbjct: 127 LNAQAAD-MWSNQTEYKKVLHE 147
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 69/121 (57%), Gaps = 2/121 (1%)
Query: 27 DGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCL 86
D + E+ GP S+YEGGV+ + + YP+K P + F +IYH N++ G +CL
Sbjct: 75 DNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQ-GVICL 133
Query: 87 DVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERY 146
D++ +WSP + + S LL NP+DPL G A+ M +R ++D+ +++ +RY
Sbjct: 134 DILKDNWSPALTISKVLLSIC-SLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRY 192
Query: 147 A 147
A
Sbjct: 193 A 193
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 68/116 (58%), Gaps = 2/116 (1%)
Query: 32 FNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQ 91
FN+ +GP + YEGG +K+ + LP+ YP + P + F+ KIYHPN+D++ G +CLD++
Sbjct: 33 FNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL-GRICLDILKD 91
Query: 92 SWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYA 147
WSP + + S + LL P P DPL+ A +D+ + +++ + YA
Sbjct: 92 KWSPALQIRTVLLS-IQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYA 146
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 68/116 (58%), Gaps = 2/116 (1%)
Query: 32 FNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQ 91
FN+ +GP + YEGG +K+ + LP+ YP + P + F+ KIYHPN+D++ G +CLD++
Sbjct: 33 FNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL-GRICLDILKD 91
Query: 92 SWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYA 147
WSP + + S + LL P P DPL+ A +D+ + +++ + YA
Sbjct: 92 KWSPALQIRTVLLS-IQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYA 146
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 69/122 (56%), Gaps = 2/122 (1%)
Query: 26 NDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVC 85
D + E+ GP S+YEGGV+ + + YP+K P + F +IYH N++ G +C
Sbjct: 29 GDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQ-GVIC 87
Query: 86 LDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCER 145
LD++ +WSP + + S LL NP+DPL G A+ M +R ++D+ +++ +R
Sbjct: 88 LDILKDNWSPALTISKVLLSIC-SLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKR 146
Query: 146 YA 147
YA
Sbjct: 147 YA 148
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
Query: 21 NVETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEM 80
+ + + ++ + GP + YEGG + + + +P YPY P + FV KI+HPN+
Sbjct: 66 SAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQ 125
Query: 81 SGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVK 140
+G++CLD++ WSP + S + +L P P+DP + + A +M+++ + Q K
Sbjct: 126 TGAICLDILKHEWSPALTIRTALLS-IQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAK 184
Query: 141 EYCERYAKK 149
+ E +AK+
Sbjct: 185 LWTETFAKE 193
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 75/130 (57%), Gaps = 8/130 (6%)
Query: 27 DGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCL 86
D +++ + G + YE GV+K+ V +P+ YP++ P I F+ IYHPN+D +G +CL
Sbjct: 31 DQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDS-AGRICL 89
Query: 87 DVI----NQSWSPMFDLLNIFESFLPQLLLY-PNPSDPLNGDAASLMMKDRKQYDQKVKE 141
DV+ +W P ++ + S QLL+ PNP DPL D +S ++ + + ++
Sbjct: 90 DVLKLPPKGAWRPSLNIATVLTSI--QLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQ 147
Query: 142 YCERYAKKEN 151
+ E++A+++
Sbjct: 148 WTEKHARQKQ 157
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 38 GPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMF 97
GP+ + YEGG + + + +P+ YPY P I FV KI+HPN+ +G++CLDV+ WSP
Sbjct: 61 GPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPAL 120
Query: 98 DLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYA 147
+ S + LL P P DP + + A + ++ + + + + +A
Sbjct: 121 TIRTALLS-IQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFA 169
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 5/126 (3%)
Query: 5 SKRRDMDVMKLMMS-DYNVETI--NDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPY 61
KR ++M LMMS D + +D L ++ HG ++YE +K+ +E P YPY
Sbjct: 32 GKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPY 91
Query: 62 KSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLN 121
+P++ F+ YHPNVD G++ LD++ + WS ++D+ I S + LL PN PLN
Sbjct: 92 NAPTVKFLTPCYHPNVD-TQGNISLDILKEKWSALYDVRTILLS-IQSLLGEPNIDSPLN 149
Query: 122 GDAASL 127
AA L
Sbjct: 150 THAAEL 155
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 3/110 (2%)
Query: 44 YEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVIN-QSWSPMFDLLNI 102
Y+ G ++I + P YP+K P I F KIYHPN+DE G VCL VI+ ++W P +
Sbjct: 48 YDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE-KGQVCLPVISAENWKPATKTDQV 106
Query: 103 FESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKENI 152
+S + L+ P P PL D A KDRK++ + +E+ ++Y +K +
Sbjct: 107 IQSLI-ALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPV 155
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 3/110 (2%)
Query: 44 YEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVIN-QSWSPMFDLLNI 102
Y+ G ++I + P YP+K P I F KIYHPN+DE G VCL VI+ ++W P +
Sbjct: 46 YDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE-KGQVCLPVISAENWKPATKTDQV 104
Query: 103 FESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKENI 152
+S + L+ P P PL D A KDRK++ + +E+ ++Y +K +
Sbjct: 105 IQSLI-ALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKRPV 153
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
Query: 39 PKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFD 98
P E Y G ++ + YP + P + + KI+HPN+D + G+VCL+++ + WSP D
Sbjct: 72 PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNID-LKGNVCLNILREDWSPALD 130
Query: 99 LLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVK 140
L +I L L L PNP+DPLN DAA L+ + K++ + V+
Sbjct: 131 LQSIITGLL-FLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR 171
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 77/145 (53%), Gaps = 4/145 (2%)
Query: 6 KRRDMDVMKLMMSDYN---VETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYK 62
KR +V+K + N V+ +++ E E GP ++ YEGG +++ +++P+ YP+
Sbjct: 12 KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFN 71
Query: 63 SPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNG 122
P + F+ KI+HPN+ ++G++CLD++ W+ L + S LL P DP +
Sbjct: 72 PPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQ-ALLAAAEPDDPQDA 130
Query: 123 DAASLMMKDRKQYDQKVKEYCERYA 147
A+ ++ + + Q + + YA
Sbjct: 131 VVANQYKQNPEMFKQTARLWAHVYA 155
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 77/145 (53%), Gaps = 4/145 (2%)
Query: 6 KRRDMDVMKLMMSDYN---VETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYK 62
KR +V+K + N V+ +++ E E GP ++ YEGG +++ +++P+ YP+
Sbjct: 14 KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFN 73
Query: 63 SPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNG 122
P + F+ KI+HPN+ ++G++CLD++ W+ L + S LL P DP +
Sbjct: 74 PPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQ-ALLAAAEPDDPQDA 132
Query: 123 DAASLMMKDRKQYDQKVKEYCERYA 147
A+ ++ + + Q + + YA
Sbjct: 133 VVANQYKQNPEMFKQTARLWAHVYA 157
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 77/145 (53%), Gaps = 4/145 (2%)
Query: 6 KRRDMDVMKLMMSDYN---VETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYK 62
KR +V+K + N V+ +++ E E GP ++ YEGG +++ +++P+ YP+
Sbjct: 11 KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFN 70
Query: 63 SPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNG 122
P + F+ KI+HPN+ ++G++CLD++ W+ L + S LL P DP +
Sbjct: 71 PPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQ-ALLAAAEPDDPQDA 129
Query: 123 DAASLMMKDRKQYDQKVKEYCERYA 147
A+ ++ + + Q + + YA
Sbjct: 130 VVANQYKQNPEMFKQTARLWAHVYA 154
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 77/145 (53%), Gaps = 4/145 (2%)
Query: 6 KRRDMDVMKLMMSDYN---VETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYK 62
KR +V+K + N V+ +++ E E GP ++ YEGG +++ +++P+ YP+
Sbjct: 27 KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFN 86
Query: 63 SPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNG 122
P + F+ KI+HPN+ ++G++CLD++ W+ L + S LL P DP +
Sbjct: 87 PPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQ-ALLAAAEPDDPQDA 145
Query: 123 DAASLMMKDRKQYDQKVKEYCERYA 147
A+ ++ + + Q + + YA
Sbjct: 146 VVANQYKQNPEMFKQTARLWAHVYA 170
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 77/145 (53%), Gaps = 4/145 (2%)
Query: 6 KRRDMDVMKLMMSDYN---VETINDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYK 62
KR +V+K + N V+ +++ E E GP ++ YEGG +++ +++P+ YP+
Sbjct: 63 KREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFN 122
Query: 63 SPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNG 122
P + F+ KI+HPN+ ++G++CLD++ W+ L + S LL P DP +
Sbjct: 123 PPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQ-ALLAAAEPDDPQDA 181
Query: 123 DAASLMMKDRKQYDQKVKEYCERYA 147
A+ ++ + + Q + + YA
Sbjct: 182 VVANQYKQNPEMFKQTARLWAHVYA 206
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 39 PKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFD 98
P E Y+ G + ++ YP+ P + +YHPN+D + G+VCL+++ + W P+
Sbjct: 43 PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNID-LEGNVCLNILREDWKPVLT 101
Query: 99 LLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKE 141
+ +I L L L PNP DPLN +AA ++ +R+ ++Q V+
Sbjct: 102 INSIIYG-LQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQR 143
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 13/119 (10%)
Query: 39 PKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQ------S 92
P E Y+GG ++ E+PDAY P + + KI+HPN+ E +G +CL ++ +
Sbjct: 53 PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITE-TGEICLSLLREHSIDGTG 111
Query: 93 WSPMFDLLNI---FESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAK 148
W+P L ++ S LL N DPLN +AA ++D++ + KV +Y +RYA+
Sbjct: 112 WAPTRTLKDVVWGLNSLFTDLL---NFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR 167
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 13/119 (10%)
Query: 39 PKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQ------S 92
P E Y+GG ++ E+PDAY P + + KI+HPN+ E +G +CL ++ +
Sbjct: 53 PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITE-TGEICLSLLREHSIDGTG 111
Query: 93 WSPMFDLLNI---FESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAK 148
W+P L ++ S LL N DPLN +AA ++D++ + KV +Y +RYA+
Sbjct: 112 WAPTRTLKDVVWGLNSLFTDLL---NFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR 167
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 88/159 (55%), Gaps = 17/159 (10%)
Query: 6 KRRDMDVMKLMMSDYNVETINDG-LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSP 64
K++ D+ ++ + ++ ++D + ++ V GP ++LYEGG +K ++ P YP K P
Sbjct: 9 KKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPP 68
Query: 65 SIGFVNKIYHPNVDEMSGSVCLDVIN-------------QSWSPMFDLLNIFESFLPQLL 111
+ F+++I+HPN+D+ G+VC+ +++ + W P+ + I S + +L
Sbjct: 69 KMKFISEIWHPNIDK-EGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVI-SML 126
Query: 112 LYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKKE 150
PN P N DAA + ++ ++ +KV + C R +++E
Sbjct: 127 TDPNFESPANVDAAKMQRENYAEFKKKVAQ-CVRRSQEE 164
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDV 88
L + V GP+ + Y GG++++++ L +P P F+ KI+HPNV +G +C++V
Sbjct: 42 LTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVG-ANGEICVNV 100
Query: 89 INQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYA 147
+ + W+ + ++ + + LL++PNP LN +A L++++ ++Y + + E +
Sbjct: 101 LKRDWTAELGIRHVLLT-IKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG 158
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
Query: 39 PKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSWSPMFD 98
P E Y+ G + ++ YP+ P + +YHPN+D + G+V L+++ + W P+
Sbjct: 63 PDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID-LEGNVALNILREDWKPVLT 121
Query: 99 LLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVK 140
+ +I L L L PNP DPLN +AA ++ +R+ ++Q V+
Sbjct: 122 INSIIYG-LQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 162
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 22/168 (13%)
Query: 1 MSSPSKRRDM-----DVMKLMMSDYNVETINDG-LNEFNVEFHGPKESLYEGGVWKIRVE 54
M SPS ++ + + + + + V +++G L + V GP + YEGG +K R++
Sbjct: 3 MGSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLK 62
Query: 55 LPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVIN-------------QSWSPMFDLLN 101
P YPY P+ F+ K++HPN+ E +G VC+ +++ + W+P ++
Sbjct: 63 FPIDYPYSPPAFRFLTKMWHPNIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRT 121
Query: 102 IFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYAKK 149
I S + LL PN P N D AS+M + K+ K +EY + K+
Sbjct: 122 ILLSVI-SLLNEPNTFSPANVD-ASVMYRKWKESKGKDREYTDIIRKQ 167
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 39 PKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVI-NQSWSPMF 97
P + Y + +R+ P YP+K P I F KIYHPNVDE +G +CL +I +++W P
Sbjct: 43 PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE-NGQICLPIISSENWKPCT 101
Query: 98 DLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYA 147
+ E+ L L+ PN +PL D A L+ ++ + + + +E+ R+
Sbjct: 102 KTCQVLEA-LNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFG 150
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 39 PKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVI-NQSWSPMF 97
P + Y + +R+ P YP+K P I F KIYHPNVDE +G +CL +I +++W P
Sbjct: 40 PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE-NGQICLPIISSENWKPCT 98
Query: 98 DLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERYA 147
+ E+ L L+ PN +PL D A L+ ++ + + + +E+ R+
Sbjct: 99 KTCQVLEA-LNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFG 147
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDV 88
L ++ G + + + GGV+ I VE P+ YP K P + F YHPNV SG++CL +
Sbjct: 40 LQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYP-SGTICLSI 98
Query: 89 IN--QSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERY 146
+N Q W P L I + LL PNP+ P A +++ +YD+KV ++Y
Sbjct: 99 LNEDQDWRPAITLKQIVLG-VQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQY 157
Query: 147 AK 148
+K
Sbjct: 158 SK 159
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDV 88
L ++ G + + + GGV+ I VE P+ YP K P + F YHPNV SG++CL +
Sbjct: 38 LQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYP-SGTICLSI 96
Query: 89 IN--QSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERY 146
+N Q W P L I + LL PNP+ P A +++ +YD+KV ++Y
Sbjct: 97 LNEDQDWRPAITLKQIVLG-VQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQY 155
Query: 147 AK 148
+K
Sbjct: 156 SK 157
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 17/147 (11%)
Query: 17 MSDYNVETINDG-LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHP 75
+ + V +++G L + V GP + YEGG +K R++ P YPY P+ F+ K++HP
Sbjct: 21 VEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHP 80
Query: 76 NVDEMSGSVCLDVIN-------------QSWSPMFDLLNIFESFLPQLLLYPNPSDPLNG 122
N+ E +G VC+ +++ + W+P ++ I S + LL PN P N
Sbjct: 81 NIYE-TGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVI-SLLNEPNTFSPANV 138
Query: 123 DAASLMMKDRKQYDQKVKEYCERYAKK 149
D AS+M + K+ K +EY + K+
Sbjct: 139 D-ASVMYRKWKESKGKDREYTDIIRKQ 164
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 17/149 (11%)
Query: 6 KRRDMDVMKLMMSDYNVETINDG-LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSP 64
+R+ ++ K + ++ I+D L + V GP ++LYEGGV+K + P YP + P
Sbjct: 23 RRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPP 82
Query: 65 SIGFVNKIYHPNVDEMSGSVCLDVIN-------------QSWSPMFDLLNIFESFLPQLL 111
+ F+ +I+HPNVD+ +G VC+ +++ + W P+ + I S + +L
Sbjct: 83 KMKFITEIWHPNVDK-NGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVI-SML 140
Query: 112 LYPNPSDPLNGDAASLMMKDRK-QYDQKV 139
PN P N DAA +DR ++ +KV
Sbjct: 141 ADPNGDSPANVDAAKEWREDRNGEFKRKV 169
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDV 88
L + G K + +EGG++K+R+ D YP P F ++HPNV SG+VCL +
Sbjct: 41 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAP-SGTVCLSI 99
Query: 89 I--NQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERY 146
+ ++ W P + I + +LL PN DP +A ++ ++R +Y+++V+ +++
Sbjct: 100 LEEDKDWRPAITIKQILLG-IQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKF 158
Query: 147 A 147
A
Sbjct: 159 A 159
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 4/114 (3%)
Query: 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDV 88
L + V G ++ +EGG++K+ + P+ YP + P F ++HPNV SG+VCL +
Sbjct: 44 LMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYP-SGTVCLSI 102
Query: 89 IN--QSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVK 140
+N + W P + I + LL PN + P +A ++ KD+ +Y+++V+
Sbjct: 103 LNEEEGWKPAITIKQILLG-IQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVR 155
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDV 88
L + G K + +EGG++K+R+ D YP P F ++HPNV SG+VCL +
Sbjct: 38 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSI 96
Query: 89 I--NQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERY 146
+ ++ W P + I + +LL PN DP +A ++ ++R +Y+++V+ +++
Sbjct: 97 LEEDKDWRPAITIKQILLG-IQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKF 155
Query: 147 A 147
A
Sbjct: 156 A 156
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDV 88
L + G K + +EGG++K+R+ D YP P F ++HPNV SG+VCL +
Sbjct: 39 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSI 97
Query: 89 I--NQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERY 146
+ ++ W P + I + +LL PN DP +A ++ ++R +Y+++V+ +++
Sbjct: 98 LEEDKDWRPAITIKQILLG-IQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKF 156
Query: 147 A 147
A
Sbjct: 157 A 157
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDV 88
L + G K + +EGG++K+R+ D YP P F ++HPNV SG+VCL +
Sbjct: 40 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSI 98
Query: 89 I--NQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERY 146
+ ++ W P + I + +LL PN DP +A ++ ++R +Y+++V+ +++
Sbjct: 99 LEEDKDWRPAITIKQILLG-IQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKF 157
Query: 147 A 147
A
Sbjct: 158 A 158
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDV 88
L + G K + +EGG++K+R+ D YP P F ++HPNV SG+VCL +
Sbjct: 41 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSI 99
Query: 89 I--NQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERY 146
+ ++ W P + I + +LL PN DP +A ++ ++R +Y+++V+ +++
Sbjct: 100 LEEDKDWRPAITIKQILLG-IQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKF 158
Query: 147 A 147
A
Sbjct: 159 A 159
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDV 88
L + G K + +EGG++K+R+ D YP P F ++HPNV SG+VCL +
Sbjct: 43 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSI 101
Query: 89 I--NQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERY 146
+ ++ W P + I + +LL PN DP +A ++ ++R +Y+++V+ +++
Sbjct: 102 LEEDKDWRPAITIKQILLG-IQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKF 160
Query: 147 A 147
A
Sbjct: 161 A 161
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDV 88
L + G K + +EGG++K+R+ D YP P F ++HPNV SG+VCL +
Sbjct: 40 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSI 98
Query: 89 I--NQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERY 146
+ ++ W P + I + +LL PN DP +A ++ ++R +Y+++V+ +++
Sbjct: 99 LEEDKDWRPAITIKQILLG-IQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKF 157
Query: 147 A 147
A
Sbjct: 158 A 158
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 70/129 (54%), Gaps = 7/129 (5%)
Query: 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFV-NKIYHPNVDEMSGSVCLD 87
L+++ GP ++ YE ++I +E+P +YP P I F+ N I H NV +G +CL+
Sbjct: 47 LSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLN 106
Query: 88 VIN-QSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLM-MKDRKQYDQKVKEYCER 145
++ + W+P++DLL+ + +LL P PL+ D +++ D Y VK +
Sbjct: 107 ILKPEEWTPVWDLLHCVHAVW-RLLREPVCDSPLDVDIGAIIRCGDMSAYQGIVKYF--- 162
Query: 146 YAKKENIVN 154
A++E I N
Sbjct: 163 LAERERINN 171
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 70/129 (54%), Gaps = 7/129 (5%)
Query: 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFV-NKIYHPNVDEMSGSVCLD 87
L+++ GP ++ YE ++I +E+P +YP P I F+ N I H NV +G +CL+
Sbjct: 47 LSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLN 106
Query: 88 VIN-QSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLM-MKDRKQYDQKVKEYCER 145
++ + W+P++DLL+ + +LL P PL+ D +++ D Y VK +
Sbjct: 107 ILKPEEWTPVWDLLHCVHAVW-RLLREPVSDSPLDVDIGNIIRCGDMSAYQGIVKYF--- 162
Query: 146 YAKKENIVN 154
A++E I N
Sbjct: 163 LAERERINN 171
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 70/129 (54%), Gaps = 7/129 (5%)
Query: 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFV-NKIYHPNVDEMSGSVCLD 87
L+++ GP ++ YE ++I +E+P +YP P I F+ N I H NV +G +CL+
Sbjct: 47 LSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLN 106
Query: 88 VIN-QSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLM-MKDRKQYDQKVKEYCER 145
++ + W+P++DLL+ + +LL P PL+ D +++ D Y VK +
Sbjct: 107 ILKPEEWTPVWDLLHCVHAVW-RLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYF--- 162
Query: 146 YAKKENIVN 154
A++E I N
Sbjct: 163 LAERERINN 171
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDV 88
L + G K + +EGG++K+R+ D YP P F ++HP V SG+VCL +
Sbjct: 41 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYP-SGTVCLSI 99
Query: 89 I--NQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERY 146
+ ++ W P + I + +LL PN DP +A ++ ++R +Y+++V+ +++
Sbjct: 100 LEEDKDWRPAITIKQILLG-IQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKF 158
Query: 147 A 147
A
Sbjct: 159 A 159
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDV 88
L + G K + +EGG++K+R+ D YP P F ++HPNV SG+VCL +
Sbjct: 41 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSI 99
Query: 89 I--NQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERY 146
+ ++ W P + I + +LL PN P +A ++ ++R +Y+++V+ +++
Sbjct: 100 LEEDKDWRPAITIKQILLG-IQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKF 158
Query: 147 A 147
A
Sbjct: 159 A 159
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDV 88
L + G K + +EGG++K+R+ D YP P F ++HPNV SG+VCL +
Sbjct: 41 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVCLSI 99
Query: 89 I--NQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERY 146
+ ++ W P + I + +LL PN P +A ++ ++R +Y+++V+ +++
Sbjct: 100 LEEDKDWRPAITIKQILLG-IQELLNEPNIQAPAQAEAYTIYCQNRVEYEKRVRAQAKKF 158
Query: 147 A 147
A
Sbjct: 159 A 159
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 25 INDGLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
+++ + E+ VE G + S+++G V+++ + Y Y P + F+ +HPNVD +G
Sbjct: 48 VSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQP 107
Query: 85 CLDVIN--QSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEY 142
C+D ++ + W+ + L +I + L +L P +P+N +AA +++KD Y ++ +
Sbjct: 108 CIDFLDNPEKWNTNYTLSSILLA-LQVMLSNPVLENPVNLEAARILVKDESLYRTILRLF 166
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDV 88
L + G K + +EGG++K+R+ D YP P F ++HPNV SG+V L +
Sbjct: 38 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVSLSI 96
Query: 89 I--NQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERY 146
+ ++ W P + I + +LL PN DP +A ++ ++R +Y+++V+ +++
Sbjct: 97 LEEDKDWRPAITIKQILLG-IQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKF 155
Query: 147 A 147
A
Sbjct: 156 A 156
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDV 88
L + G K + +EGG++K+R+ D YP P F ++HPNV SG+V L +
Sbjct: 38 LMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP-SGTVXLSI 96
Query: 89 I--NQSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCERY 146
+ ++ W P + I + +LL PN DP +A ++ ++R +Y+++V+ +++
Sbjct: 97 LEEDKDWRPAITIKQILLG-IQELLNEPNIQDPAQAEAYTIYXQNRVEYEKRVRAQAKKF 155
Query: 147 A 147
A
Sbjct: 156 A 156
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 20/158 (12%)
Query: 1 MSSPSKRRDMDVMKLMMSDYNVETINDGLNEFNV-----EFHGPKESLYEGGVWKIRVEL 55
MS +++R + ++ ++ D + +E N+ GP ++ Y GV+ ++E
Sbjct: 1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEF 60
Query: 56 PDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVIN-------------QSWSPMFDLLNI 102
P YP P + F I HPN+ +G VC+ +++ + WSP+ + I
Sbjct: 61 PKDYPLSPPKLTFTPSILHPNIYP-NGEVCISILHSPGDDPNMYELAEERWSPVQSVEKI 119
Query: 103 FESFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVK 140
S + +L PN N DA L +R +++++VK
Sbjct: 120 LLSVM-SMLSEPNIESGANIDACILWRDNRPEFERQVK 156
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 27/159 (16%)
Query: 12 VMKLMMSDYNVETIN------------DGLNEFNVEFHGPKESLYEGGVWKIRVELPDAY 59
+K +M++Y T+N + E+ GP+++ +E GV+ + P Y
Sbjct: 8 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 67
Query: 60 PYKSPSIGFVNKIYHPNVDEMSGSVCLDVIN-------------QSWSPMFDLLNIFESF 106
P P + F +++HPN+ G VC+ +++ + WSP+ + I S
Sbjct: 68 PLSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSV 126
Query: 107 LPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCER 145
+ +L PN N DA+ + DR+Q+ + K+ ++
Sbjct: 127 V-SMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 164
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 27/159 (16%)
Query: 12 VMKLMMSDYNVETIN------------DGLNEFNVEFHGPKESLYEGGVWKIRVELPDAY 59
+K +M++Y T+N + E+ GP+++ +E GV+ + P Y
Sbjct: 4 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 63
Query: 60 PYKSPSIGFVNKIYHPNVDEMSGSVCLDVIN-------------QSWSPMFDLLNIFESF 106
P P + F +++HPN+ G VC+ +++ + WSP+ + I S
Sbjct: 64 PLSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSV 122
Query: 107 LPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCER 145
+ +L PN N DA+ + DR+Q+ + K+ ++
Sbjct: 123 V-SMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 160
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 27/159 (16%)
Query: 12 VMKLMMSDYNVETIN------------DGLNEFNVEFHGPKESLYEGGVWKIRVELPDAY 59
+K +M++Y T+N + E+ GP+++ +E GV+ + P Y
Sbjct: 7 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 66
Query: 60 PYKSPSIGFVNKIYHPNVDEMSGSVCLDVIN-------------QSWSPMFDLLNIFESF 106
P P + F +++HPN+ G VC+ +++ + WSP+ + I S
Sbjct: 67 PLSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSV 125
Query: 107 LPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCER 145
+ +L PN N DA+ + DR+Q+ + K+ ++
Sbjct: 126 V-SMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 163
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 27/159 (16%)
Query: 12 VMKLMMSDYNVETIN------------DGLNEFNVEFHGPKESLYEGGVWKIRVELPDAY 59
+K +M++Y T+N + E+ GP+++ +E GV+ + P Y
Sbjct: 10 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 69
Query: 60 PYKSPSIGFVNKIYHPNVDEMSGSVCLDVIN-------------QSWSPMFDLLNIFESF 106
P P + F +++HPN+ G VC+ +++ + WSP+ + I S
Sbjct: 70 PLSPPKMRFTCEMFHPNIYP-DGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSV 128
Query: 107 LPQLLLYPNPSDPLNGDAASLMMKDRKQYDQKVKEYCER 145
+ +L PN N DA+ + DR+Q+ + K+ ++
Sbjct: 129 V-SMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 166
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 1 MSSPSKRRDMDVMKLM-----MSDYNVETINDGLNEFNVEFHGPKESLYEGGVWKIRVEL 55
M+S KR +++ L N +++ + + ++ V+ G +LYEG +++ +
Sbjct: 20 MASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKF 79
Query: 56 PDAYPYKSPSIGFV--NKIYHPNVDEMSGSVCLDVINQSWSPMFDLLNIFESFLPQL 110
YP+ SP + F N HP+V +G +CL ++ + WSP + ++ S + L
Sbjct: 80 SSRYPFDSPQVMFTGENIPVHPHVYS-NGHICLSILTEDWSPALSVQSVCLSIISML 135
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%)
Query: 34 VEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSW 93
V++ G + ++Y V+KI++ PD YP K P + F+ K +G +CL V+ +
Sbjct: 54 VQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLGDDY 113
Query: 94 SPMFDLLNIFESFLPQL 110
+P + + S + L
Sbjct: 114 NPSLSISGLILSIISML 130
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 20 YNVETINDGLNEFNVEFHGPKESLYEGG--VWKIRVELPDAYPYKSPSIGFVNKIYHPNV 77
++V+T D + + ++ P +S+Y G +++ V D YP++ P++ FV +Y P V
Sbjct: 42 FSVDT--DTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLV 99
Query: 78 DEMSGSVCLDVINQSWSP 95
G +C ++N W+P
Sbjct: 100 -TGEGGICDRMVNDFWTP 116
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 39/77 (50%)
Query: 34 VEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQSW 93
V++ G + ++Y V+K+++ PD YP K P + F+ K +G +CL ++ +
Sbjct: 40 VKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDY 99
Query: 94 SPMFDLLNIFESFLPQL 110
+P + + S + L
Sbjct: 100 NPSLSISGLVLSIISML 116
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 19/121 (15%)
Query: 2 SSPSKRRDMDVMKLMMSDY-----------NVETINDGLNEFNVEFHGPKESLYEGGVWK 50
S+ SKR + + DY E + + E++ GP+ + YEGG +
Sbjct: 5 STSSKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYH 64
Query: 51 IRVELPDAYPYKSPSIGFVNKIYHPNVD-EMSGSVCLDVIN---QSWSPMFDLLNIFESF 106
++ P +P+K PSI + PN + + +CL + + +W+P + + I
Sbjct: 65 GKLIFPREFPFKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGL 120
Query: 107 L 107
L
Sbjct: 121 L 121
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
L + GP + YE ++ ++VE YP PS+ FV KI ++ SG V
Sbjct: 43 LTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 98
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
L + GP + YE ++ ++VE YP PS+ FV KI ++ SG V
Sbjct: 37 LTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 92
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
L + GP + YE ++ ++VE YP PS+ FV KI ++ SG V
Sbjct: 48 LTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 103
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
L + GP + YE ++ ++VE YP PS+ FV KI ++ SG V
Sbjct: 38 LTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMV 93
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 33.5 bits (75), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLD 87
+ ++N GP S +E ++ + ++ YP P + F++KI P V+ +G V D
Sbjct: 38 MTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTD 96
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 33.5 bits (75), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLD 87
+ ++N GP S +E ++ + ++ YP P + F++KI P V+ +G V D
Sbjct: 39 MTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTD 97
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
L + GP ++YE ++ +++E YP P + FV KI V+ +G V
Sbjct: 40 LTRWTGMILGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 95
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
L + GP ++YE ++ +++E YP P + FV KI V+ +G V
Sbjct: 68 LTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 123
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 29 LNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSV 84
L + GP ++YE ++ +++E YP P + FV KI V+ +G V
Sbjct: 58 LTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVV 113
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 17/133 (12%)
Query: 38 GPKESLYEGGVWKIRVELPDAYPYKSP-----SIGFVNKIYHPNVDEMSGSVCLDVIN-- 90
GP ++ Y G ++ V P YP P + G + ++PN+ G VCL ++N
Sbjct: 118 GPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYN-DGKVCLSILNTW 176
Query: 91 -----QSWSPMF-DLLNIFESFLPQLLL---YPNPSDPLNGDAASLMMKDRKQYDQKVKE 141
+ W+P L + S +L+ Y N + ++YD +++
Sbjct: 177 HGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQ 236
Query: 142 YCERYAKKENIVN 154
++A E I N
Sbjct: 237 ATVKWAXLEQIRN 249
>pdb|2QGX|A Chain A, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|B Chain B, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|C Chain C, Ubiquitin-Conjugating Enzyme E2q
pdb|2QGX|D Chain D, Ubiquitin-Conjugating Enzyme E2q
Length = 169
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 53/131 (40%), Gaps = 22/131 (16%)
Query: 18 SDYNVETINDGLNEFNVE---------FHGPKESLYE---GGVWKIRVELPDAYPYKSPS 65
+Y VE +ND L ++NV+ H + L E + D +P+ P
Sbjct: 27 GNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQILKEKEGADFILLNFSFKDNFPFDPPF 86
Query: 66 IGFVNKIYHPNVDEMSGSVCLDVIN-QSWSPMFDLLNIFESFLPQLLLYPNPSDPLNGDA 124
+ V+ + G++C++++ Q WS + + ES + Q+ + + G A
Sbjct: 87 VRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSI----ESVIMQI-----SATLVKGKA 137
Query: 125 ASLMMKDRKQY 135
++ QY
Sbjct: 138 RVQFGANKSQY 148
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 20 YNVETIND-GLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVD 78
+ +E+ +D L+ ++ G +++E ++ + + D YP P++ F KI VD
Sbjct: 48 FGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVD 107
Query: 79 EMSGSVCLDV-INQSWSPMFDLLNIFESFLPQLLLYPNPSDP 119
+ ++ I ++W+ + + I S ++L N P
Sbjct: 108 NCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKRLP 149
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 20 YNVETIND-GLNEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVD 78
+ +E+ +D L+ ++ G +++E ++ + + D YP P++ F KI VD
Sbjct: 44 FGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVD 103
Query: 79 EMSGSVCLDV-INQSWSPMFDLLNIFESFLPQLLLYPNPSDP 119
+ ++ I ++W+ + + I S ++L N P
Sbjct: 104 NCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKRLP 145
>pdb|1XX1|A Chain A, Structural Basis For Ion-Coordination And The Catalytic
Mechanism Of Sphingomyelinases D
pdb|1XX1|B Chain B, Structural Basis For Ion-Coordination And The Catalytic
Mechanism Of Sphingomyelinases D
pdb|1XX1|C Chain C, Structural Basis For Ion-Coordination And The Catalytic
Mechanism Of Sphingomyelinases D
pdb|1XX1|D Chain D, Structural Basis For Ion-Coordination And The Catalytic
Mechanism Of Sphingomyelinases D
pdb|2F9R|A Chain A, Crystal Structure Of The Inactive State Of The Smase I, A
Sphingomyelinase D From Loxosceles Laeta Venom
pdb|2F9R|B Chain B, Crystal Structure Of The Inactive State Of The Smase I, A
Sphingomyelinase D From Loxosceles Laeta Venom
pdb|2F9R|C Chain C, Crystal Structure Of The Inactive State Of The Smase I, A
Sphingomyelinase D From Loxosceles Laeta Venom
pdb|2F9R|D Chain D, Crystal Structure Of The Inactive State Of The Smase I, A
Sphingomyelinase D From Loxosceles Laeta Venom
Length = 285
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 53 VELPDAYPYKSPSIGFVNKIYHPNVDEMSGS-VCLDV 88
L +A + + GF+NKIY+ +VD++S + LDV
Sbjct: 208 ARLKEAIKSRDSANGFINKIYYWSVDKVSTTKAALDV 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,262,155
Number of Sequences: 62578
Number of extensions: 216139
Number of successful extensions: 611
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 122
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)