BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030038
MPGVVSGKKRITEANMCFSTLTELDKLTHSKSNPLLTSQVAFDLDSPLLPGLPDDVAKCI
LALVPRSNFPAMGTVCKKWRSFIRSKEFITVRKLLGLLEEWLCILTMDPEGKQSQWEVLD
CFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGS
VAFY

High Scoring Gene Products

Symbol, full name Information P value
AT1G67480 protein from Arabidopsis thaliana 6.4e-28
AT1G27420 protein from Arabidopsis thaliana 1.5e-13

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030038
        (184 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2008773 - symbol:AT1G67480 "AT1G67480" species...   312  6.4e-28   1
TAIR|locus:2015979 - symbol:AT1G27420 "AT1G27420" species...   181  1.5e-13   1


>TAIR|locus:2008773 [details] [associations]
            symbol:AT1G67480 "AT1G67480" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR001810 InterPro:IPR006652 Pfam:PF01344
            PROSITE:PS50181 SMART:SM00256 SMART:SM00612 EMBL:CP002684
            GenomeReviews:CT485782_GR Gene3D:2.130.10.80 InterPro:IPR015916
            EMBL:AC004393 EMBL:AC011020 EMBL:AK228988 EMBL:BT029730
            IPI:IPI00519699 PIR:B96698 PIR:T02157 RefSeq:NP_001077785.1
            RefSeq:NP_176915.1 UniGene:At.35647 ProteinModelPortal:Q9CAG8
            SMR:Q9CAG8 PRIDE:Q9CAG8 EnsemblPlants:AT1G67480.1
            EnsemblPlants:AT1G67480.2 GeneID:843069 KEGG:ath:AT1G67480
            TAIR:At1g67480 eggNOG:NOG323172 HOGENOM:HOG000239092
            InParanoid:Q9CAG8 OMA:FVDVYNP PhylomeDB:Q9CAG8
            ProtClustDB:CLSN2681991 Genevestigator:Q9CAG8 Uniprot:Q9CAG8
        Length = 376

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 74/178 (41%), Positives = 97/178 (54%)

Query:     5 VSGKKRITEANMCFSTLTELDKLTHSKSNPLLTSQVAFXXXXXXXXXXXXXVAKCILALV 64
             +SGKKRI    MCFS    LD  +    N +    +               VAK  LALV
Sbjct:     6 LSGKKRIVNHGMCFSK-GNLDLGSRLSENFMDDPLIP---------GLPDDVAKQCLALV 55

Query:    65 PRSNFPAMGTVCKKWRSFIRSKEFITVRKXXXXXXXXXXXXTMDPEGKQSQWEVLDCFGN 124
             PR+ FP+MG+VCKKWR  ++SKEFITVR+            TM+  GK ++WEV+DC G 
Sbjct:    56 PRARFPSMGSVCKKWRFVVQSKEFITVRRLAGMLEEWLYVLTMNAGGKDNRWEVMDCLGQ 115

Query:   125 RHRLLPLMPXXXXXXXXXXXXXXKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVA 182
             +   LP MP              KL+V+AG  +I+G+  ASADVYQYD+CLN +  +A
Sbjct:   116 KLSSLPPMPGPAKTGFKVVVVDGKLLVIAGCCMINGSLVASADVYQYDTCLNSWSRLA 173


>TAIR|locus:2015979 [details] [associations]
            symbol:AT1G27420 "AT1G27420" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR001810 InterPro:IPR006652 Pfam:PF01344
            PROSITE:PS50181 SMART:SM00256 SMART:SM00612 EMBL:CP002684
            GenomeReviews:CT485782_GR Gene3D:2.130.10.80 InterPro:IPR015916
            EMBL:AC004557 IPI:IPI00539548 IPI:IPI01019520 RefSeq:NP_174062.1
            UniGene:At.51789 ProteinModelPortal:Q9FZJ3 SMR:Q9FZJ3 PaxDb:Q9FZJ3
            PRIDE:Q9FZJ3 GeneID:839632 KEGG:ath:AT1G27420 TAIR:At1g27420
            eggNOG:NOG308113 InParanoid:Q9FZJ3 OMA:VLMESEC
            Genevestigator:Q9FZJ3 Uniprot:Q9FZJ3
        Length = 346

 Score = 181 (68.8 bits), Expect = 1.5e-13, P = 1.5e-13
 Identities = 45/135 (33%), Positives = 67/135 (49%)

Query:    56 VAKCILALVPRSNFPAMGTVCKKWRSFIRSKEFITVRKXXXXXXXXXXXXTMDPE-GKQS 114
             VA+  ++ +PRS+F     VC++WRSF+RS+ F  VRK             M+ E G+  
Sbjct:    18 VAELCVSKIPRSSFQITSQVCRRWRSFLRSQHFAAVRKLTGTVEEFLCVL-MESECGRDV 76

Query:   115 QWEVLDCFGNRHRLLPLMPX-XXXXXXXXXXXXXKLVVMAGYSVIDG------TASASAD 167
              WEV D  GN+   +P +P               K+V   GY+ ++G      T SASAD
Sbjct:    77 YWEVFDASGNKLGQIPPVPGPLKRGFGVAVLDGGKIVFFGGYTEVEGSGINSTTVSASAD 136

Query:   168 VYQYDSCLNRFGSVA 182
             VY++D   N +  +A
Sbjct:   137 VYEFDPANNSWRKLA 151


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.134   0.408    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      184       145   0.00071  103 3  11 22  0.40    31
                                                     30  0.49    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  149 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.89u 0.10s 9.99t   Elapsed:  00:00:01
  Total cpu time:  9.89u 0.10s 9.99t   Elapsed:  00:00:01
  Start:  Fri May 10 06:08:32 2013   End:  Fri May 10 06:08:33 2013

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