Query 030038
Match_columns 184
No_of_seqs 209 out of 1937
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 07:33:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030038.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030038hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 99.7 1.3E-16 2.8E-21 137.8 7.1 106 72-184 354-462 (571)
2 KOG4441 Proteins containing BT 99.6 4.9E-16 1.1E-20 134.2 6.9 105 72-184 306-414 (571)
3 PHA02713 hypothetical protein; 99.6 6.7E-15 1.4E-19 127.2 8.0 109 72-184 325-450 (557)
4 PHA02713 hypothetical protein; 99.5 1.5E-14 3.3E-19 125.0 8.3 104 73-184 278-385 (557)
5 PHA02790 Kelch-like protein; P 99.5 4.4E-14 9.5E-19 120.2 7.6 100 73-184 293-394 (480)
6 TIGR03548 mutarot_permut cycli 99.5 1.1E-13 2.5E-18 112.0 6.9 92 88-184 110-204 (323)
7 PLN02153 epithiospecifier prot 99.4 2.6E-13 5.7E-18 110.7 7.1 116 68-184 51-177 (341)
8 PHA03098 kelch-like protein; P 99.4 2.7E-13 5.8E-18 116.7 7.0 107 71-184 315-424 (534)
9 PHA02790 Kelch-like protein; P 99.4 2.9E-13 6.2E-18 115.2 7.1 93 75-184 339-433 (480)
10 TIGR03547 muta_rot_YjhT mutatr 99.4 6.6E-13 1.4E-17 108.4 8.1 107 75-184 39-186 (346)
11 TIGR03548 mutarot_permut cycli 99.3 3E-12 6.5E-17 103.7 8.2 99 78-184 52-157 (323)
12 PLN02153 epithiospecifier prot 99.3 3.1E-12 6.8E-17 104.4 7.6 104 77-184 7-119 (341)
13 PF13964 Kelch_6: Kelch motif 99.3 3.5E-12 7.7E-17 75.3 5.5 45 137-184 2-46 (50)
14 PRK14131 N-acetylneuraminic ac 99.3 3.7E-12 8E-17 105.3 7.4 106 76-184 61-207 (376)
15 TIGR03547 muta_rot_YjhT mutatr 99.3 3E-12 6.5E-17 104.6 6.4 111 69-184 87-237 (346)
16 PF01344 Kelch_1: Kelch motif; 99.3 3.8E-12 8.2E-17 74.1 4.3 45 137-184 2-46 (47)
17 PHA03098 kelch-like protein; P 99.3 1.5E-11 3.3E-16 105.8 9.6 83 97-184 292-376 (534)
18 PLN02193 nitrile-specifier pro 99.3 1.2E-11 2.5E-16 105.2 8.5 104 77-184 151-262 (470)
19 PLN02193 nitrile-specifier pro 99.3 7.1E-12 1.5E-16 106.5 7.0 110 69-183 195-311 (470)
20 PRK14131 N-acetylneuraminic ac 99.2 1.8E-11 3.9E-16 101.3 6.9 114 68-184 107-258 (376)
21 PF07646 Kelch_2: Kelch motif; 99.1 2.6E-10 5.6E-15 67.0 5.6 47 137-184 2-48 (49)
22 KOG0379 Kelch repeat-containin 99.0 9.2E-10 2E-14 93.8 6.4 112 68-182 89-206 (482)
23 PF13418 Kelch_4: Galactose ox 98.9 1.7E-09 3.8E-14 63.3 4.8 45 137-184 2-47 (49)
24 KOG0379 Kelch repeat-containin 98.8 6.6E-09 1.4E-13 88.6 6.1 112 68-183 140-258 (482)
25 KOG4693 Uncharacterized conser 98.7 3.5E-08 7.6E-13 76.7 6.4 83 97-182 189-284 (392)
26 PF12937 F-box-like: F-box-lik 98.6 2.6E-08 5.7E-13 57.8 3.0 41 49-89 1-41 (47)
27 KOG4693 Uncharacterized conser 98.6 9.8E-08 2.1E-12 74.2 5.9 82 98-182 87-173 (392)
28 smart00612 Kelch Kelch domain. 98.5 3.3E-07 7.2E-12 52.5 5.1 45 102-147 2-47 (47)
29 KOG1230 Protein containing rep 98.4 2.4E-07 5.1E-12 75.8 4.8 112 70-183 101-224 (521)
30 smart00612 Kelch Kelch domain. 98.4 2.6E-07 5.7E-12 52.9 3.3 33 148-184 1-33 (47)
31 COG3055 Uncharacterized protei 98.4 6.9E-07 1.5E-11 71.9 6.4 82 98-182 45-129 (381)
32 PF13964 Kelch_6: Kelch motif 98.4 4.7E-07 1E-11 53.1 4.1 39 97-135 9-49 (50)
33 KOG1230 Protein containing rep 98.4 5.1E-07 1.1E-11 73.9 4.8 120 63-183 150-289 (521)
34 PF13854 Kelch_5: Kelch motif 98.3 1.9E-06 4.1E-11 48.7 5.3 41 133-176 2-42 (42)
35 PF00646 F-box: F-box domain; 98.3 1.7E-07 3.6E-12 54.5 0.8 42 49-90 3-44 (48)
36 smart00256 FBOX A Receptor for 98.3 4E-07 8.6E-12 50.8 2.0 38 52-89 1-38 (41)
37 PF13415 Kelch_3: Galactose ox 98.3 2.8E-06 6.1E-11 49.6 5.2 44 100-144 2-48 (49)
38 PF13415 Kelch_3: Galactose ox 98.2 2E-06 4.3E-11 50.2 3.9 37 146-184 1-37 (49)
39 KOG4152 Host cell transcriptio 98.1 6.2E-07 1.3E-11 75.3 0.9 101 78-182 18-124 (830)
40 PF01344 Kelch_1: Kelch motif; 97.9 4.5E-06 9.8E-11 48.0 1.3 37 97-133 9-47 (47)
41 COG3055 Uncharacterized protei 97.9 1.3E-05 2.7E-10 64.7 4.2 136 44-182 25-212 (381)
42 KOG4152 Host cell transcriptio 97.7 8.6E-05 1.9E-09 62.8 6.3 83 99-181 215-309 (830)
43 PF07646 Kelch_2: Kelch motif; 97.5 0.00023 4.9E-09 41.3 4.1 37 97-133 9-49 (49)
44 PF13418 Kelch_4: Galactose ox 97.5 8.1E-05 1.8E-09 43.2 2.0 36 99-134 12-49 (49)
45 PLN02772 guanylate kinase 97.3 0.0021 4.5E-08 53.4 8.8 60 97-157 32-97 (398)
46 PLN02772 guanylate kinase 97.0 0.0014 3E-08 54.5 5.4 43 137-182 25-67 (398)
47 PLN03215 ascorbic acid mannose 96.8 0.00078 1.7E-08 55.6 2.1 38 48-85 3-41 (373)
48 KOG2120 SCF ubiquitin ligase, 96.5 0.0013 2.8E-08 52.7 1.8 41 48-88 97-137 (419)
49 KOG2997 F-box protein FBX9 [Ge 95.7 0.0078 1.7E-07 48.3 2.4 42 49-90 107-153 (366)
50 TIGR01640 F_box_assoc_1 F-box 94.9 0.069 1.5E-06 41.0 5.5 65 114-182 14-86 (230)
51 KOG0281 Beta-TrCP (transducin 94.7 0.02 4.3E-07 46.6 2.0 42 47-88 73-118 (499)
52 KOG2437 Muskelin [Signal trans 94.1 0.018 3.8E-07 49.1 0.5 83 98-181 271-361 (723)
53 KOG2437 Muskelin [Signal trans 93.7 0.1 2.2E-06 44.7 4.3 82 99-181 324-419 (723)
54 PF12768 Rax2: Cortical protei 91.1 2.4 5.2E-05 34.0 8.9 64 114-182 16-80 (281)
55 PF07893 DUF1668: Protein of u 90.4 2.4 5.3E-05 34.8 8.7 52 99-156 76-127 (342)
56 TIGR01640 F_box_assoc_1 F-box 89.5 1.9 4.1E-05 33.0 7.0 63 114-180 70-132 (230)
57 PF08268 FBA_3: F-box associat 87.8 6.1 0.00013 27.3 8.1 79 99-180 5-86 (129)
58 PF07250 Glyoxal_oxid_N: Glyox 87.7 1.4 3E-05 34.5 5.2 57 98-156 76-138 (243)
59 PF07250 Glyoxal_oxid_N: Glyox 82.8 2.8 6E-05 32.9 4.7 60 115-182 47-111 (243)
60 PF07893 DUF1668: Protein of u 81.6 14 0.00031 30.3 8.8 48 125-181 159-214 (342)
61 KOG0274 Cdc4 and related F-box 73.9 1.2 2.6E-05 39.0 0.3 44 44-87 103-146 (537)
62 KOG4341 F-box protein containi 72.9 2.3 4.9E-05 36.0 1.7 40 46-85 69-108 (483)
63 PF05096 Glu_cyclase_2: Glutam 69.8 27 0.00058 27.8 7.0 50 100-152 56-105 (264)
64 PF13013 F-box-like_2: F-box-l 59.1 12 0.00025 25.6 2.8 30 48-77 21-50 (109)
65 PF03089 RAG2: Recombination a 52.3 21 0.00044 28.9 3.5 42 114-156 131-174 (337)
66 COG4257 Vgb Streptogramin lyas 52.1 37 0.0008 27.4 4.9 59 114-182 254-313 (353)
67 KOG2502 Tub family proteins [G 51.2 20 0.00043 29.6 3.3 38 47-84 43-88 (355)
68 PF13570 PQQ_3: PQQ-like domai 47.2 33 0.00071 18.2 2.9 25 141-175 16-40 (40)
69 cd00094 HX Hemopexin-like repe 43.1 1.4E+02 0.0029 22.2 6.9 56 99-176 110-177 (194)
70 cd01206 Homer Homer type EVH1 43.0 76 0.0016 21.7 4.7 38 114-151 11-56 (111)
71 KOG2321 WD40 repeat protein [G 37.5 86 0.0019 27.9 5.3 58 102-176 148-207 (703)
72 PF12768 Rax2: Cortical protei 36.2 76 0.0016 25.5 4.5 105 67-182 16-129 (281)
73 TIGR02658 TTQ_MADH_Hv methylam 31.5 2.1E+02 0.0045 23.8 6.5 77 98-177 11-88 (352)
74 PF10911 DUF2717: Protein of u 30.5 40 0.00087 21.3 1.7 32 44-75 10-41 (77)
75 PHA00441 hypothetical protein 30.3 18 0.00038 23.4 0.1 9 16-24 1-9 (89)
76 PF03540 TFIID_30kDa: Transcri 30.1 36 0.00078 19.8 1.3 16 50-65 1-16 (51)
77 KOG0289 mRNA splicing factor [ 29.1 2.3E+02 0.005 24.4 6.3 57 115-182 412-470 (506)
78 KOG3926 F-box proteins [Amino 26.8 1.1E+02 0.0024 24.6 3.9 29 45-73 198-227 (332)
79 PF07443 HARP: HepA-related pr 26.3 25 0.00054 20.8 0.2 12 169-180 21-32 (55)
80 KOG1445 Tumor-specific antigen 26.2 2E+02 0.0044 26.2 5.7 56 114-175 742-799 (1012)
81 PF09372 PRANC: PRANC domain; 25.9 44 0.00096 21.8 1.4 25 46-70 69-93 (97)
82 PF06433 Me-amine-dh_H: Methyl 24.8 1.1E+02 0.0023 25.4 3.7 32 146-177 249-280 (342)
83 PRK11138 outer membrane biogen 23.9 4.1E+02 0.009 21.9 7.2 69 97-180 67-146 (394)
84 KOG0316 Conserved WD40 repeat- 23.8 3.4E+02 0.0074 21.6 6.0 41 114-155 123-163 (307)
85 TIGR03866 PQQ_ABC_repeats PQQ- 23.8 3.2E+02 0.007 20.6 6.6 20 102-125 3-22 (300)
86 COG5469 Predicted metal-bindin 23.2 32 0.0007 24.4 0.4 21 48-68 118-138 (143)
87 PF08450 SGL: SMP-30/Gluconola 20.9 3.1E+02 0.0066 20.8 5.5 63 99-181 11-75 (246)
88 PF06058 DCP1: Dcp1-like decap 20.3 81 0.0017 21.9 1.9 16 166-181 29-44 (122)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.66 E-value=1.3e-16 Score=137.78 Aligned_cols=106 Identities=22% Similarity=0.257 Sum_probs=89.7
Q ss_pred HhhcchhhhhhhcchhhHHHHHhhc--ccccEEEEEeeCCC-CCCCceEEeecCCCceecCCCCCCCCccCeEEEEECCE
Q 030038 72 MGTVCKKWRSFIRSKEFITVRKLLG--LLEEWLCILTMDPE-GKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGK 148 (184)
Q Consensus 72 ~~~Vsk~W~~l~~s~~~~~~r~~~~--~~~~~lyv~gg~~~-~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~ 148 (184)
+..+.++|..+. .+...|..++ ..++.||++||... ....++++|||.+++|..+++|+.. |.++++++++|+
T Consensus 354 YD~~~~~W~~~a---~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~-r~~~gv~~~~g~ 429 (571)
T KOG4441|consen 354 YDPRTNQWTPVA---PMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR-RSGHGVAVLGGK 429 (571)
T ss_pred ecCCCCceeccC---CccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcc-eeeeEEEEECCE
Confidence 345667898864 4666777665 57899999999864 3367899999999999999999995 999999999999
Q ss_pred EEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038 149 LVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY 184 (184)
Q Consensus 149 lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m 184 (184)
||++||.++ .....++|++|||.||+|+.+|+|
T Consensus 430 iYi~GG~~~---~~~~l~sve~YDP~t~~W~~~~~M 462 (571)
T KOG4441|consen 430 LYIIGGGDG---SSNCLNSVECYDPETNTWTLIAPM 462 (571)
T ss_pred EEEEcCcCC---CccccceEEEEcCCCCceeecCCc
Confidence 999999875 233789999999999999999998
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.63 E-value=4.9e-16 Score=134.20 Aligned_cols=105 Identities=24% Similarity=0.319 Sum_probs=88.1
Q ss_pred HhhcchhhhhhhcchhhHHHHHhhc--ccccEEEEEeeCCC--CCCCceEEeecCCCceecCCCCCCCCccCeEEEEECC
Q 030038 72 MGTVCKKWRSFIRSKEFITVRKLLG--LLEEWLCILTMDPE--GKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVING 147 (184)
Q Consensus 72 ~~~Vsk~W~~l~~s~~~~~~r~~~~--~~~~~lyv~gg~~~--~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~ 147 (184)
+....+.|..+...+ ..|...+ ..++.||++||... ....++++|||.+++|..+++|+.. |.++++++++|
T Consensus 306 yd~~~~~w~~~a~m~---~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~-R~~~~v~~l~g 381 (571)
T KOG4441|consen 306 YDPKTNEWSSLAPMP---SPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTK-RSDFGVAVLDG 381 (571)
T ss_pred ecCCcCcEeecCCCC---cccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCc-cccceeEEECC
Confidence 344556898886433 4454444 57889999999873 3358899999999999999999998 99999999999
Q ss_pred EEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038 148 KLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY 184 (184)
Q Consensus 148 ~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m 184 (184)
+||++||.++ ....++||+|||.+|+|+.+++|
T Consensus 382 ~iYavGG~dg----~~~l~svE~YDp~~~~W~~va~m 414 (571)
T KOG4441|consen 382 KLYAVGGFDG----EKSLNSVECYDPVTNKWTPVAPM 414 (571)
T ss_pred EEEEEecccc----ccccccEEEecCCCCcccccCCC
Confidence 9999999984 56788999999999999999987
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.56 E-value=6.7e-15 Score=127.17 Aligned_cols=109 Identities=15% Similarity=0.236 Sum_probs=84.0
Q ss_pred HhhcchhhhhhhcchhhHHHHHhhc--ccccEEEEEeeCCCC-CCCceEEeecCCCceecCCCCCCCCccCeEEEEECCE
Q 030038 72 MGTVCKKWRSFIRSKEFITVRKLLG--LLEEWLCILTMDPEG-KQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGK 148 (184)
Q Consensus 72 ~~~Vsk~W~~l~~s~~~~~~r~~~~--~~~~~lyv~gg~~~~-~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~ 148 (184)
+....+.|..+. .+...|..++ ..++.||++||.... ....+++|||.+++|..+++||.+ +.++++++++|+
T Consensus 325 Yd~~~n~W~~~~---~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~-r~~~~~~~~~g~ 400 (557)
T PHA02713 325 INIENKIHVELP---PMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIA-LSSYGMCVLDQY 400 (557)
T ss_pred EECCCCeEeeCC---CCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcc-cccccEEEECCE
Confidence 344567797764 3445665544 568899999997532 246799999999999999999987 888899999999
Q ss_pred EEEEeeeecCC--------------CCCCCCCeEEEEeCCCCCeecCCCC
Q 030038 149 LVVMAGYSVID--------------GTASASADVYQYDSCLNRFGSVAFY 184 (184)
Q Consensus 149 lyv~GG~~~~~--------------~~~~~~~~v~~ydp~t~~W~~~~~m 184 (184)
|||+||..+.. +.....++|++|||.+++|+.+++|
T Consensus 401 IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m 450 (557)
T PHA02713 401 IYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF 450 (557)
T ss_pred EEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC
Confidence 99999975310 0011357899999999999999987
No 4
>PHA02713 hypothetical protein; Provisional
Probab=99.54 E-value=1.5e-14 Score=124.98 Aligned_cols=104 Identities=10% Similarity=0.055 Sum_probs=82.0
Q ss_pred hhcchhhhhhhcchhhHHHHHhh--cccccEEEEEeeCCC--CCCCceEEeecCCCceecCCCCCCCCccCeEEEEECCE
Q 030038 73 GTVCKKWRSFIRSKEFITVRKLL--GLLEEWLCILTMDPE--GKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGK 148 (184)
Q Consensus 73 ~~Vsk~W~~l~~s~~~~~~r~~~--~~~~~~lyv~gg~~~--~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~ 148 (184)
....+.|..+...+ ..|..+ ...++.||++||... .....+++|||.++.|..+++||.+ |.++++++++|+
T Consensus 278 d~~~~~W~~l~~mp---~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~-R~~~~~~~~~g~ 353 (557)
T PHA02713 278 NINTMEYSVISTIP---NHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKN-RCRFSLAVIDDT 353 (557)
T ss_pred eCCCCeEEECCCCC---ccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcch-hhceeEEEECCE
Confidence 34456788775433 233333 356889999999632 2246799999999999999999987 889999999999
Q ss_pred EEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038 149 LVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY 184 (184)
Q Consensus 149 lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m 184 (184)
|||+||..+ ....++|++|||.+++|+.+++|
T Consensus 354 IYviGG~~~----~~~~~sve~Ydp~~~~W~~~~~m 385 (557)
T PHA02713 354 IYAIGGQNG----TNVERTIECYTMGDDKWKMLPDM 385 (557)
T ss_pred EEEECCcCC----CCCCceEEEEECCCCeEEECCCC
Confidence 999999853 23567899999999999999987
No 5
>PHA02790 Kelch-like protein; Provisional
Probab=99.50 E-value=4.4e-14 Score=120.21 Aligned_cols=100 Identities=13% Similarity=0.069 Sum_probs=79.7
Q ss_pred hhcchhhhhhhcchhhHHHHHhhc--ccccEEEEEeeCCCCCCCceEEeecCCCceecCCCCCCCCccCeEEEEECCEEE
Q 030038 73 GTVCKKWRSFIRSKEFITVRKLLG--LLEEWLCILTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLV 150 (184)
Q Consensus 73 ~~Vsk~W~~l~~s~~~~~~r~~~~--~~~~~lyv~gg~~~~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~ly 150 (184)
....+.|..+.. +...|...+ ..++.||++||.... ..++.|||.+++|..+++||.+ |.++++++++|+||
T Consensus 293 dp~~~~W~~~~~---m~~~r~~~~~v~~~~~iYviGG~~~~--~sve~ydp~~n~W~~~~~l~~~-r~~~~~~~~~g~IY 366 (480)
T PHA02790 293 NYISNNWIPIPP---MNSPRLYASGVPANNKLYVVGGLPNP--TSVERWFHGDAAWVNMPSLLKP-RCNPAVASINNVIY 366 (480)
T ss_pred ECCCCEEEECCC---CCchhhcceEEEECCEEEEECCcCCC--CceEEEECCCCeEEECCCCCCC-CcccEEEEECCEEE
Confidence 345567888754 334454433 568899999997432 5689999999999999999987 88899999999999
Q ss_pred EEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038 151 VMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY 184 (184)
Q Consensus 151 v~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m 184 (184)
|+||... ....+++|||.+++|+.+++|
T Consensus 367 viGG~~~------~~~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 367 VIGGHSE------TDTTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred EecCcCC------CCccEEEEeCCCCEEEeCCCC
Confidence 9999753 236799999999999999887
No 6
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.46 E-value=1.1e-13 Score=112.03 Aligned_cols=92 Identities=20% Similarity=0.110 Sum_probs=71.7
Q ss_pred hHHHHHhhc--ccccEEEEEeeCCC-CCCCceEEeecCCCceecCCCCCCCCccCeEEEEECCEEEEEeeeecCCCCCCC
Q 030038 88 FITVRKLLG--LLEEWLCILTMDPE-GKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASA 164 (184)
Q Consensus 88 ~~~~r~~~~--~~~~~lyv~gg~~~-~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 164 (184)
+...|..++ ..++.||++||... ...+.+++||+.+++|..++++|..+|..+.+++++++|||+||... ..
T Consensus 110 lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~-----~~ 184 (323)
T TIGR03548 110 LPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSN-----IA 184 (323)
T ss_pred CCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCC-----cc
Confidence 444444333 46789999999632 23478999999999999999988644778888889999999999753 22
Q ss_pred CCeEEEEeCCCCCeecCCCC
Q 030038 165 SADVYQYDSCLNRFGSVAFY 184 (184)
Q Consensus 165 ~~~v~~ydp~t~~W~~~~~m 184 (184)
..++++||+.+++|+.+++|
T Consensus 185 ~~~~~~yd~~~~~W~~~~~~ 204 (323)
T TIGR03548 185 YTDGYKYSPKKNQWQKVADP 204 (323)
T ss_pred ccceEEEecCCCeeEECCCC
Confidence 45689999999999999865
No 7
>PLN02153 epithiospecifier protein
Probab=99.43 E-value=2.6e-13 Score=110.68 Aligned_cols=116 Identities=12% Similarity=0.076 Sum_probs=82.3
Q ss_pred chhhHhhcchhhhhhhcchhhHHH-HHh--hcccccEEEEEeeCCCC-CCCceEEeecCCCceecCCCC-----CCCCcc
Q 030038 68 NFPAMGTVCKKWRSFIRSKEFITV-RKL--LGLLEEWLCILTMDPEG-KQSQWEVLDCFGNRHRLLPLM-----PGPVKV 138 (184)
Q Consensus 68 ~~~~~~~Vsk~W~~l~~s~~~~~~-r~~--~~~~~~~lyv~gg~~~~-~~~~~~~ydp~t~~W~~lp~~-----p~~~r~ 138 (184)
++..+....+.|..+......... +.. ....++.||++||.... ....+++||+.+++|..++++ |.+ |.
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~-R~ 129 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEA-RT 129 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCC-ce
Confidence 455566677889877543221111 111 22457889999997432 246799999999999999887 544 78
Q ss_pred CeEEEEECCEEEEEeeeecCCC--CCCCCCeEEEEeCCCCCeecCCCC
Q 030038 139 GFGVVVINGKLVVMAGYSVIDG--TASASADVYQYDSCLNRFGSVAFY 184 (184)
Q Consensus 139 ~~~~~~~~~~lyv~GG~~~~~~--~~~~~~~v~~ydp~t~~W~~~~~m 184 (184)
++++++.+++|||+||...... .....+++++||+.+++|+.+++|
T Consensus 130 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~ 177 (341)
T PLN02153 130 FHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDP 177 (341)
T ss_pred eeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCC
Confidence 8899999999999999853210 012357899999999999998764
No 8
>PHA03098 kelch-like protein; Provisional
Probab=99.42 E-value=2.7e-13 Score=116.71 Aligned_cols=107 Identities=18% Similarity=0.151 Sum_probs=83.1
Q ss_pred hHhhcchhhhhhhcchhhHHHHHhhc--ccccEEEEEeeCCCC-CCCceEEeecCCCceecCCCCCCCCccCeEEEEECC
Q 030038 71 AMGTVCKKWRSFIRSKEFITVRKLLG--LLEEWLCILTMDPEG-KQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVING 147 (184)
Q Consensus 71 ~~~~Vsk~W~~l~~s~~~~~~r~~~~--~~~~~lyv~gg~~~~-~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~ 147 (184)
.+....+.|..+.. +...|..++ ..++.||++||.... ....+++||+.+++|..++++|.+ |.+++++++++
T Consensus 315 ~yd~~~~~W~~~~~---~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~-r~~~~~~~~~~ 390 (534)
T PHA03098 315 SYDTKTKSWNKVPE---LIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFP-RYNPCVVNVNN 390 (534)
T ss_pred EEeCCCCeeeECCC---CCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcC-CccceEEEECC
Confidence 34556778977643 333444443 467899999997532 246789999999999999999987 88899999999
Q ss_pred EEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038 148 KLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY 184 (184)
Q Consensus 148 ~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m 184 (184)
+|||+||.... ....+++++||+.+++|+.+++|
T Consensus 391 ~iYv~GG~~~~---~~~~~~v~~yd~~t~~W~~~~~~ 424 (534)
T PHA03098 391 LIYVIGGISKN---DELLKTVECFSLNTNKWSKGSPL 424 (534)
T ss_pred EEEEECCcCCC---CcccceEEEEeCCCCeeeecCCC
Confidence 99999997531 23468999999999999998875
No 9
>PHA02790 Kelch-like protein; Provisional
Probab=99.42 E-value=2.9e-13 Score=115.23 Aligned_cols=93 Identities=12% Similarity=0.064 Sum_probs=75.2
Q ss_pred cchhhhhhhcchhhHHHHHhhc--ccccEEEEEeeCCCCCCCceEEeecCCCceecCCCCCCCCccCeEEEEECCEEEEE
Q 030038 75 VCKKWRSFIRSKEFITVRKLLG--LLEEWLCILTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVM 152 (184)
Q Consensus 75 Vsk~W~~l~~s~~~~~~r~~~~--~~~~~lyv~gg~~~~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~lyv~ 152 (184)
..++|..+.. +...|..++ ..++.||++||.... ...+++|||.+++|..+++|+.+ |.++++++++|+|||+
T Consensus 339 ~~n~W~~~~~---l~~~r~~~~~~~~~g~IYviGG~~~~-~~~ve~ydp~~~~W~~~~~m~~~-r~~~~~~~~~~~IYv~ 413 (480)
T PHA02790 339 GDAAWVNMPS---LLKPRCNPAVASINNVIYVIGGHSET-DTTTEYLLPNHDQWQFGPSTYYP-HYKSCALVFGRRLFLV 413 (480)
T ss_pred CCCeEEECCC---CCCCCcccEEEEECCEEEEecCcCCC-CccEEEEeCCCCEEEeCCCCCCc-cccceEEEECCEEEEE
Confidence 4567877643 444554443 568899999997533 36789999999999999999987 7888889999999999
Q ss_pred eeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038 153 AGYSVIDGTASASADVYQYDSCLNRFGSVAFY 184 (184)
Q Consensus 153 GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m 184 (184)
||. +++|||.+|+|+.+++|
T Consensus 414 GG~------------~e~ydp~~~~W~~~~~m 433 (480)
T PHA02790 414 GRN------------AEFYCESSNTWTLIDDP 433 (480)
T ss_pred CCc------------eEEecCCCCcEeEcCCC
Confidence 973 57899999999999987
No 10
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.41 E-value=6.6e-13 Score=108.44 Aligned_cols=107 Identities=16% Similarity=0.106 Sum_probs=74.3
Q ss_pred cchhhhhhhcchhhHHHHHhh--cccccEEEEEeeCCCC-------CCCceEEeecCCCceecCCC-CCCCCccCeEEE-
Q 030038 75 VCKKWRSFIRSKEFITVRKLL--GLLEEWLCILTMDPEG-------KQSQWEVLDCFGNRHRLLPL-MPGPVKVGFGVV- 143 (184)
Q Consensus 75 Vsk~W~~l~~s~~~~~~r~~~--~~~~~~lyv~gg~~~~-------~~~~~~~ydp~t~~W~~lp~-~p~~~r~~~~~~- 143 (184)
..++|..+...+. ..|..+ ...++.|||+||.... ....+++|||.+++|+.++. +|.. +.+++++
T Consensus 39 ~~~~W~~l~~~p~--~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~-~~~~~~~~ 115 (346)
T TIGR03547 39 PSKGWQKIADFPG--GPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVG-LLGASGFS 115 (346)
T ss_pred CCCCceECCCCCC--CCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCc-ccceeEEE
Confidence 4567988764331 234333 3567899999997421 13678999999999999984 3443 5555555
Q ss_pred EECCEEEEEeeeecCC--CC----------------------------CCCCCeEEEEeCCCCCeecCCCC
Q 030038 144 VINGKLVVMAGYSVID--GT----------------------------ASASADVYQYDSCLNRFGSVAFY 184 (184)
Q Consensus 144 ~~~~~lyv~GG~~~~~--~~----------------------------~~~~~~v~~ydp~t~~W~~~~~m 184 (184)
+++++|||+||..... +. ....++|++|||.+++|+.+++|
T Consensus 116 ~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~ 186 (346)
T TIGR03547 116 LHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGEN 186 (346)
T ss_pred EeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccC
Confidence 6899999999975210 00 00137899999999999999876
No 11
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.35 E-value=3e-12 Score=103.71 Aligned_cols=99 Identities=11% Similarity=0.019 Sum_probs=75.7
Q ss_pred hhhhhhcchhhHHHHHhh--cccccEEEEEeeCCCC-CCCceEEeecCCCce----ecCCCCCCCCccCeEEEEECCEEE
Q 030038 78 KWRSFIRSKEFITVRKLL--GLLEEWLCILTMDPEG-KQSQWEVLDCFGNRH----RLLPLMPGPVKVGFGVVVINGKLV 150 (184)
Q Consensus 78 ~W~~l~~s~~~~~~r~~~--~~~~~~lyv~gg~~~~-~~~~~~~ydp~t~~W----~~lp~~p~~~r~~~~~~~~~~~ly 150 (184)
.|..+...+ ..|... ...++.||++||.... ....+++||+.+++| ..++++|.+ +..+++++++++||
T Consensus 52 ~W~~~~~lp---~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~-~~~~~~~~~~~~iY 127 (323)
T TIGR03548 52 KWVKDGQLP---YEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFT-FENGSACYKDGTLY 127 (323)
T ss_pred eEEEcccCC---ccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcC-ccCceEEEECCEEE
Confidence 476665333 334322 2457889999996432 246789999999887 789999987 77888999999999
Q ss_pred EEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038 151 VMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY 184 (184)
Q Consensus 151 v~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m 184 (184)
|+||... ....+++++||+.+++|+++++|
T Consensus 128 v~GG~~~----~~~~~~v~~yd~~~~~W~~~~~~ 157 (323)
T TIGR03548 128 VGGGNRN----GKPSNKSYLFNLETQEWFELPDF 157 (323)
T ss_pred EEeCcCC----CccCceEEEEcCCCCCeeECCCC
Confidence 9999742 23578999999999999999865
No 12
>PLN02153 epithiospecifier protein
Probab=99.34 E-value=3.1e-12 Score=104.37 Aligned_cols=104 Identities=16% Similarity=0.206 Sum_probs=75.1
Q ss_pred hhhhhhhcch-hhHHHHHhhc--ccccEEEEEeeCCCC---CCCceEEeecCCCceecCCCCCCCCc---cCeEEEEECC
Q 030038 77 KKWRSFIRSK-EFITVRKLLG--LLEEWLCILTMDPEG---KQSQWEVLDCFGNRHRLLPLMPGPVK---VGFGVVVING 147 (184)
Q Consensus 77 k~W~~l~~s~-~~~~~r~~~~--~~~~~lyv~gg~~~~---~~~~~~~ydp~t~~W~~lp~~p~~~r---~~~~~~~~~~ 147 (184)
..|..+.... .....|..++ ..++.|||+||.... ..+.+++||+.+++|..+++++..++ .+++++++++
T Consensus 7 ~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~ 86 (341)
T PLN02153 7 GGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGT 86 (341)
T ss_pred CeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECC
Confidence 3477775421 1233444443 457889999997421 13579999999999999987653223 3678889999
Q ss_pred EEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038 148 KLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY 184 (184)
Q Consensus 148 ~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m 184 (184)
+|||+||... ....+++++||+.+++|+.+++|
T Consensus 87 ~iyv~GG~~~----~~~~~~v~~yd~~t~~W~~~~~~ 119 (341)
T PLN02153 87 KLYIFGGRDE----KREFSDFYSYDTVKNEWTFLTKL 119 (341)
T ss_pred EEEEECCCCC----CCccCcEEEEECCCCEEEEeccC
Confidence 9999999753 23467899999999999988754
No 13
>PF13964 Kelch_6: Kelch motif
Probab=99.33 E-value=3.5e-12 Score=75.28 Aligned_cols=45 Identities=31% Similarity=0.499 Sum_probs=40.2
Q ss_pred ccCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038 137 KVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY 184 (184)
Q Consensus 137 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m 184 (184)
|.++++++++++|||+||.... ....+++++||+.|++|+++++|
T Consensus 2 R~~~s~v~~~~~iyv~GG~~~~---~~~~~~v~~yd~~t~~W~~~~~m 46 (50)
T PF13964_consen 2 RYGHSAVVVGGKIYVFGGYDNS---GKYSNDVERYDPETNTWEQLPPM 46 (50)
T ss_pred CccCEEEEECCEEEEECCCCCC---CCccccEEEEcCCCCcEEECCCC
Confidence 6788999999999999998642 45789999999999999999997
No 14
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.32 E-value=3.7e-12 Score=105.35 Aligned_cols=106 Identities=18% Similarity=0.139 Sum_probs=73.4
Q ss_pred chhhhhhhcchhhHHHHHhh--cccccEEEEEeeCCC-C------CCCceEEeecCCCceecCCCC-CCCCccCeEEEE-
Q 030038 76 CKKWRSFIRSKEFITVRKLL--GLLEEWLCILTMDPE-G------KQSQWEVLDCFGNRHRLLPLM-PGPVKVGFGVVV- 144 (184)
Q Consensus 76 sk~W~~l~~s~~~~~~r~~~--~~~~~~lyv~gg~~~-~------~~~~~~~ydp~t~~W~~lp~~-p~~~r~~~~~~~- 144 (184)
.++|..+...+. ..|..+ ...++.|||+||... . ....+++||+.+++|+.++++ |.. +.++++++
T Consensus 61 ~~~W~~l~~~p~--~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~-~~~~~~~~~ 137 (376)
T PRK14131 61 SKGWTKIAAFPG--GPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVG-LAGHVAVSL 137 (376)
T ss_pred CCCeEECCcCCC--CCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCc-ccceEEEEe
Confidence 467987754332 134333 356789999999743 1 135789999999999999863 333 55666665
Q ss_pred ECCEEEEEeeeecCC--C----------------------------CCCCCCeEEEEeCCCCCeecCCCC
Q 030038 145 INGKLVVMAGYSVID--G----------------------------TASASADVYQYDSCLNRFGSVAFY 184 (184)
Q Consensus 145 ~~~~lyv~GG~~~~~--~----------------------------~~~~~~~v~~ydp~t~~W~~~~~m 184 (184)
.+++|||+||..... + .....++|++||+.+++|+.+++|
T Consensus 138 ~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~ 207 (376)
T PRK14131 138 HNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGES 207 (376)
T ss_pred eCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcC
Confidence 899999999974210 0 001247899999999999998765
No 15
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.31 E-value=3e-12 Score=104.59 Aligned_cols=111 Identities=14% Similarity=0.009 Sum_probs=78.3
Q ss_pred hhhHhhcchhhhhhhcchhhHHHHHhhc---ccccEEEEEeeCCCC----------------------------------
Q 030038 69 FPAMGTVCKKWRSFIRSKEFITVRKLLG---LLEEWLCILTMDPEG---------------------------------- 111 (184)
Q Consensus 69 ~~~~~~Vsk~W~~l~~s~~~~~~r~~~~---~~~~~lyv~gg~~~~---------------------------------- 111 (184)
..++....+.|..+.. + ....|..+. ..++.||++||....
T Consensus 87 v~~Yd~~~~~W~~~~~-~-~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (346)
T TIGR03547 87 VYRYDPKKNSWQKLDT-R-SPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDY 164 (346)
T ss_pred EEEEECCCCEEecCCC-C-CCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHc
Confidence 3445667788998852 1 222232221 358899999996421
Q ss_pred -CCCceEEeecCCCceecCCCCCCCCccCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEE--eCCCCCeecCCCC
Q 030038 112 -KQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQY--DSCLNRFGSVAFY 184 (184)
Q Consensus 112 -~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~y--dp~t~~W~~~~~m 184 (184)
....+++|||.+++|..+++||..++.++++++++++|||+||.... .....++++| |+.+++|..+++|
T Consensus 165 ~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~y~~~~~~~~W~~~~~m 237 (346)
T TIGR03547 165 FWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKP---GLRTAEVKQYLFTGGKLEWNKLPPL 237 (346)
T ss_pred CccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCC---CccchheEEEEecCCCceeeecCCC
Confidence 02578999999999999999986447788889999999999997531 1123455555 5678899999887
No 16
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.29 E-value=3.8e-12 Score=74.08 Aligned_cols=45 Identities=24% Similarity=0.426 Sum_probs=40.9
Q ss_pred ccCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038 137 KVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY 184 (184)
Q Consensus 137 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m 184 (184)
|.++++++++++|||+||... .....+++++||+.+++|+.+++|
T Consensus 2 R~~~~~~~~~~~iyv~GG~~~---~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 2 RSGHAAVVVGNKIYVIGGYDG---NNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp BBSEEEEEETTEEEEEEEBES---TSSBEEEEEEEETTTTEEEEEEEE
T ss_pred CccCEEEEECCEEEEEeeecc---cCceeeeEEEEeCCCCEEEEcCCC
Confidence 778999999999999999975 356789999999999999999987
No 17
>PHA03098 kelch-like protein; Provisional
Probab=99.29 E-value=1.5e-11 Score=105.85 Aligned_cols=83 Identities=13% Similarity=0.145 Sum_probs=70.6
Q ss_pred ccccEEEEEeeCCCC--CCCceEEeecCCCceecCCCCCCCCccCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCC
Q 030038 97 LLEEWLCILTMDPEG--KQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSC 174 (184)
Q Consensus 97 ~~~~~lyv~gg~~~~--~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~ 174 (184)
..++.||++||.... ....+++||+.+++|..+++|+.+ |.++++++++++|||+||... ....+++++||+.
T Consensus 292 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-R~~~~~~~~~~~lyv~GG~~~----~~~~~~v~~yd~~ 366 (534)
T PHA03098 292 VLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP-RKNPGVTVFNNRIYVIGGIYN----SISLNTVESWKPG 366 (534)
T ss_pred EECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc-cccceEEEECCEEEEEeCCCC----CEecceEEEEcCC
Confidence 467889999997532 235789999999999999999976 888999999999999999853 3457889999999
Q ss_pred CCCeecCCCC
Q 030038 175 LNRFGSVAFY 184 (184)
Q Consensus 175 t~~W~~~~~m 184 (184)
+++|+.+++|
T Consensus 367 ~~~W~~~~~l 376 (534)
T PHA03098 367 ESKWREEPPL 376 (534)
T ss_pred CCceeeCCCc
Confidence 9999999876
No 18
>PLN02193 nitrile-specifier protein
Probab=99.28 E-value=1.2e-11 Score=105.21 Aligned_cols=104 Identities=17% Similarity=0.192 Sum_probs=76.9
Q ss_pred hhhhhhhcchhhHHHHHhhc--ccccEEEEEeeCCCC---CCCceEEeecCCCceecCCCC---CCCCccCeEEEEECCE
Q 030038 77 KKWRSFIRSKEFITVRKLLG--LLEEWLCILTMDPEG---KQSQWEVLDCFGNRHRLLPLM---PGPVKVGFGVVVINGK 148 (184)
Q Consensus 77 k~W~~l~~s~~~~~~r~~~~--~~~~~lyv~gg~~~~---~~~~~~~ydp~t~~W~~lp~~---p~~~r~~~~~~~~~~~ 148 (184)
..|..+....+....|..++ ..++.||++||.... ....+++||+.+++|..++++ |...+.++++++++++
T Consensus 151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~ 230 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGST 230 (470)
T ss_pred ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCE
Confidence 57988764333334555444 457889999996321 125699999999999998754 3222457788899999
Q ss_pred EEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038 149 LVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY 184 (184)
Q Consensus 149 lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m 184 (184)
|||+||... ....+++++||+.+++|+++++|
T Consensus 231 lYvfGG~~~----~~~~ndv~~yD~~t~~W~~l~~~ 262 (470)
T PLN02193 231 LYVFGGRDA----SRQYNGFYSFDTTTNEWKLLTPV 262 (470)
T ss_pred EEEECCCCC----CCCCccEEEEECCCCEEEEcCcC
Confidence 999999763 24578999999999999998765
No 19
>PLN02193 nitrile-specifier protein
Probab=99.28 E-value=7.1e-12 Score=106.48 Aligned_cols=110 Identities=11% Similarity=0.116 Sum_probs=80.7
Q ss_pred hhhHhhcchhhhhhhcchhhHH-HHHhh--cccccEEEEEeeCCCC-CCCceEEeecCCCceecCCCC---CCCCccCeE
Q 030038 69 FPAMGTVCKKWRSFIRSKEFIT-VRKLL--GLLEEWLCILTMDPEG-KQSQWEVLDCFGNRHRLLPLM---PGPVKVGFG 141 (184)
Q Consensus 69 ~~~~~~Vsk~W~~l~~s~~~~~-~r~~~--~~~~~~lyv~gg~~~~-~~~~~~~ydp~t~~W~~lp~~---p~~~r~~~~ 141 (184)
+..+....++|..+........ .|..+ ...++.|||+||.... ..+.+++||+.+++|..++++ |.+ |.+++
T Consensus 195 v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~-R~~h~ 273 (470)
T PLN02193 195 LYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTP-RSFHS 273 (470)
T ss_pred EEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCC-ccceE
Confidence 4455566778986543212221 12222 2467899999997432 347899999999999999887 554 88889
Q ss_pred EEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCC
Q 030038 142 VVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAF 183 (184)
Q Consensus 142 ~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~ 183 (184)
+++.+++|||+||... ....+++++||+.+++|+.+++
T Consensus 274 ~~~~~~~iYv~GG~~~----~~~~~~~~~yd~~t~~W~~~~~ 311 (470)
T PLN02193 274 MAADEENVYVFGGVSA----TARLKTLDSYNIVDKKWFHCST 311 (470)
T ss_pred EEEECCEEEEECCCCC----CCCcceEEEEECCCCEEEeCCC
Confidence 9999999999999863 3356789999999999998763
No 20
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.23 E-value=1.8e-11 Score=101.25 Aligned_cols=114 Identities=11% Similarity=-0.032 Sum_probs=78.3
Q ss_pred chhhHhhcchhhhhhhcchhhHHHHHhhc--c-cccEEEEEeeCCCC---------------------------------
Q 030038 68 NFPAMGTVCKKWRSFIRSKEFITVRKLLG--L-LEEWLCILTMDPEG--------------------------------- 111 (184)
Q Consensus 68 ~~~~~~~Vsk~W~~l~~s~~~~~~r~~~~--~-~~~~lyv~gg~~~~--------------------------------- 111 (184)
++.++....++|..+.... ...+..+. . .++.||++||....
T Consensus 107 ~v~~YD~~~n~W~~~~~~~--p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (376)
T PRK14131 107 DVYKYDPKTNSWQKLDTRS--PVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPED 184 (376)
T ss_pred cEEEEeCCCCEEEeCCCCC--CCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhh
Confidence 3445566678899986321 12222222 2 68899999996421
Q ss_pred --CCCceEEeecCCCceecCCCCCCCCccCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038 112 --KQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY 184 (184)
Q Consensus 112 --~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m 184 (184)
....+++|||.+++|..++++|...+.++++++++++|||+||.... +........+.||+.+++|..+++|
T Consensus 185 ~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~-~~~~~~~~~~~~~~~~~~W~~~~~~ 258 (376)
T PRK14131 185 YFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKP-GLRTDAVKQGKFTGNNLKWQKLPDL 258 (376)
T ss_pred cCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECC-CcCChhheEEEecCCCcceeecCCC
Confidence 02568999999999999999987547788888899999999997531 1111122234568899999999876
No 21
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=99.10 E-value=2.6e-10 Score=66.97 Aligned_cols=47 Identities=32% Similarity=0.614 Sum_probs=39.5
Q ss_pred ccCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038 137 KVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY 184 (184)
Q Consensus 137 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m 184 (184)
|.++++++++++|||+||... .......+++++||+.+++|+.+++|
T Consensus 2 r~~hs~~~~~~kiyv~GG~~~-~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 2 RYGHSAVVLDGKIYVFGGYGT-DNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred ccceEEEEECCEEEEECCccc-CCCCcccceeEEEECCCCEEeecCCC
Confidence 678899999999999999911 11346788999999999999999886
No 22
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=98.98 E-value=9.2e-10 Score=93.84 Aligned_cols=112 Identities=16% Similarity=0.193 Sum_probs=83.8
Q ss_pred chhhHhhcchhhhhhhcchhhHHHHHhh--cccccEEEEEeeCCC--CCCCceEEeecCCCceecCCCCC--CCCccCeE
Q 030038 68 NFPAMGTVCKKWRSFIRSKEFITVRKLL--GLLEEWLCILTMDPE--GKQSQWEVLDCFGNRHRLLPLMP--GPVKVGFG 141 (184)
Q Consensus 68 ~~~~~~~Vsk~W~~l~~s~~~~~~r~~~--~~~~~~lyv~gg~~~--~~~~~~~~ydp~t~~W~~lp~~p--~~~r~~~~ 141 (184)
++..++..++.|............|..+ ......||++||... .....++.||+.+++|..+.+.. +++|.+|+
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs 168 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHS 168 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccce
Confidence 3555666778887776554444344333 245688999999753 22468999999999999987532 23489999
Q ss_pred EEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCC
Q 030038 142 VVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVA 182 (184)
Q Consensus 142 ~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~ 182 (184)
+++++.+|||+||.... ....+++++||..+.+|.++.
T Consensus 169 ~~~~g~~l~vfGG~~~~---~~~~ndl~i~d~~~~~W~~~~ 206 (482)
T KOG0379|consen 169 ATVVGTKLVVFGGIGGT---GDSLNDLHIYDLETSTWSELD 206 (482)
T ss_pred EEEECCEEEEECCccCc---ccceeeeeeeccccccceecc
Confidence 99999999999998642 237899999999999999874
No 23
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.94 E-value=1.7e-09 Score=63.30 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=30.3
Q ss_pred ccCeEEEEE-CCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038 137 KVGFGVVVI-NGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY 184 (184)
Q Consensus 137 r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m 184 (184)
|.+|+++.+ +++|||+||.... ....+++++||+.+++|+++++|
T Consensus 2 R~~h~~~~~~~~~i~v~GG~~~~---~~~~~d~~~~d~~~~~W~~~~~~ 47 (49)
T PF13418_consen 2 RYGHSAVSIGDNSIYVFGGRDSS---GSPLNDLWIFDIETNTWTRLPSM 47 (49)
T ss_dssp -BS-EEEEE-TTEEEEE--EEE----TEE---EEEEETTTTEEEE--SS
T ss_pred cceEEEEEEeCCeEEEECCCCCC---CcccCCEEEEECCCCEEEECCCC
Confidence 778888888 5899999998752 35789999999999999999876
No 24
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=98.82 E-value=6.6e-09 Score=88.64 Aligned_cols=112 Identities=14% Similarity=0.132 Sum_probs=85.2
Q ss_pred chhhHhhcchhhhhhhcchhhHHHHHhhc--ccccEEEEEeeCCCC--CCCceEEeecCCCceecCCC---CCCCCccCe
Q 030038 68 NFPAMGTVCKKWRSFIRSKEFITVRKLLG--LLEEWLCILTMDPEG--KQSQWEVLDCFGNRHRLLPL---MPGPVKVGF 140 (184)
Q Consensus 68 ~~~~~~~Vsk~W~~l~~s~~~~~~r~~~~--~~~~~lyv~gg~~~~--~~~~~~~ydp~t~~W~~lp~---~p~~~r~~~ 140 (184)
++..+..-+..|..+..-......|..+. .....+||+||.... ..+.+++||..+.+|.++.. .|. +|.+|
T Consensus 140 ~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~-pR~gH 218 (482)
T KOG0379|consen 140 ELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPS-PRYGH 218 (482)
T ss_pred heEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCC-CCCCc
Confidence 44556667788888764444444554443 456899999997543 36889999999999999863 344 48999
Q ss_pred EEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCC
Q 030038 141 GVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAF 183 (184)
Q Consensus 141 ~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~ 183 (184)
++++++++++|+||... .....++++.+|..+.+|..++.
T Consensus 219 ~~~~~~~~~~v~gG~~~---~~~~l~D~~~ldl~~~~W~~~~~ 258 (482)
T KOG0379|consen 219 AMVVVGNKLLVFGGGDD---GDVYLNDVHILDLSTWEWKLLPT 258 (482)
T ss_pred eEEEECCeEEEEecccc---CCceecceEeeecccceeeeccc
Confidence 99999999999999762 35678999999999999997653
No 25
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.71 E-value=3.5e-08 Score=76.66 Aligned_cols=83 Identities=18% Similarity=0.293 Sum_probs=65.5
Q ss_pred ccccEEEEEeeCCCCC----------CCceEEeecCCCceecCCCC---CCCCccCeEEEEECCEEEEEeeeecCCCCCC
Q 030038 97 LLEEWLCILTMDPEGK----------QSQWEVLDCFGNRHRLLPLM---PGPVKVGFGVVVINGKLVVMAGYSVIDGTAS 163 (184)
Q Consensus 97 ~~~~~lyv~gg~~~~~----------~~~~~~ydp~t~~W~~lp~~---p~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~ 163 (184)
..++..||+||..+.. -+.+.++|..|..|...|+- |.. |..++.-+.++++|++||+.+. .+.
T Consensus 189 ~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~G-RRSHS~fvYng~~Y~FGGYng~--ln~ 265 (392)
T KOG4693|consen 189 VIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGG-RRSHSTFVYNGKMYMFGGYNGT--LNV 265 (392)
T ss_pred hccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCc-ccccceEEEcceEEEecccchh--hhh
Confidence 4678899999975421 14567899999999998753 333 6677888899999999999763 345
Q ss_pred CCCeEEEEeCCCCCeecCC
Q 030038 164 ASADVYQYDSCLNRFGSVA 182 (184)
Q Consensus 164 ~~~~v~~ydp~t~~W~~~~ 182 (184)
..+++|+|||.|..|..+.
T Consensus 266 HfndLy~FdP~t~~W~~I~ 284 (392)
T KOG4693|consen 266 HFNDLYCFDPKTSMWSVIS 284 (392)
T ss_pred hhcceeecccccchheeee
Confidence 7899999999999999764
No 26
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.64 E-value=2.6e-08 Score=57.77 Aligned_cols=41 Identities=20% Similarity=0.577 Sum_probs=35.2
Q ss_pred CCCChHHHHHHHhccCCccchhhHhhcchhhhhhhcchhhH
Q 030038 49 LPGLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEFI 89 (184)
Q Consensus 49 ~~~LP~dl~~~il~rlp~~~~~~~~~Vsk~W~~l~~s~~~~ 89 (184)
|..||+|++.+||..++..++.+++.|||+|+.++.+..+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW 41 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLW 41 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhh
Confidence 67899999999999999999999999999999999766443
No 27
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.59 E-value=9.8e-08 Score=74.23 Aligned_cols=82 Identities=13% Similarity=0.142 Sum_probs=65.8
Q ss_pred cccEEEEEeeCCCC-C-CCceEEeecCCCceecCC---CCCCCCccCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEEe
Q 030038 98 LEEWLCILTMDPEG-K-QSQWEVLDCFGNRHRLLP---LMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYD 172 (184)
Q Consensus 98 ~~~~lyv~gg~~~~-~-~~~~~~ydp~t~~W~~lp---~~p~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~yd 172 (184)
.+..+|+-||.++. . -+-+++|||++++|.+.. -.|.. |.++++++.++.+|++||+... ....+.+++++|
T Consensus 87 y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPga-RDGHsAcV~gn~MyiFGGye~~--a~~FS~d~h~ld 163 (392)
T KOG4693|consen 87 YQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGA-RDGHSACVWGNQMYIFGGYEED--AQRFSQDTHVLD 163 (392)
T ss_pred EcceEEEEcCccCcccccceeeeeccccccccccceeeecCCc-cCCceeeEECcEEEEecChHHH--HHhhhccceeEe
Confidence 46789999997652 2 256789999999999854 24555 8999999999999999998653 245688999999
Q ss_pred CCCCCeecCC
Q 030038 173 SCLNRFGSVA 182 (184)
Q Consensus 173 p~t~~W~~~~ 182 (184)
..|-+|+.+.
T Consensus 164 ~~TmtWr~~~ 173 (392)
T KOG4693|consen 164 FATMTWREMH 173 (392)
T ss_pred ccceeeeehh
Confidence 9999999863
No 28
>smart00612 Kelch Kelch domain.
Probab=98.50 E-value=3.3e-07 Score=52.48 Aligned_cols=45 Identities=36% Similarity=0.484 Sum_probs=36.9
Q ss_pred EEEEeeCCC-CCCCceEEeecCCCceecCCCCCCCCccCeEEEEECC
Q 030038 102 LCILTMDPE-GKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVING 147 (184)
Q Consensus 102 lyv~gg~~~-~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~ 147 (184)
||++||... .....+++|||.+++|..+++|+.. |..++++++++
T Consensus 2 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~~~g 47 (47)
T smart00612 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTP-RSGHGVAVING 47 (47)
T ss_pred EEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCc-cccceEEEeCC
Confidence 899999753 2346789999999999999999987 88888777664
No 29
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.45 E-value=2.4e-07 Score=75.81 Aligned_cols=112 Identities=15% Similarity=0.229 Sum_probs=81.3
Q ss_pred hhHhhcchhhhhhhcchhhHHHHHhhc---ccccEEEEEeeCCCC-------CCCceEEeecCCCceecCCC--CCCCCc
Q 030038 70 PAMGTVCKKWRSFIRSKEFITVRKLLG---LLEEWLCILTMDPEG-------KQSQWEVLDCFGNRHRLLPL--MPGPVK 137 (184)
Q Consensus 70 ~~~~~Vsk~W~~l~~s~~~~~~r~~~~---~~~~~lyv~gg~~~~-------~~~~~~~ydp~t~~W~~lp~--~p~~~r 137 (184)
.+...-...|+.+. +|.-.-.|+.+. ...+.++++||.-.. ....++.||..+++|.+|.. -|.+ |
T Consensus 101 y~Yn~k~~eWkk~~-spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~-R 178 (521)
T KOG1230|consen 101 YSYNTKKNEWKKVV-SPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSP-R 178 (521)
T ss_pred eEEeccccceeEec-cCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCC-C
Confidence 33444556798874 343334555543 345789999985221 13568899999999999864 3444 8
Q ss_pred cCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCC
Q 030038 138 VGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAF 183 (184)
Q Consensus 138 ~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~ 183 (184)
.||.+++-..+|++|||+-...+.....++||+||..|=+|.++.+
T Consensus 179 SGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep 224 (521)
T KOG1230|consen 179 SGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP 224 (521)
T ss_pred ccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC
Confidence 9999999999999999986543344578999999999999998854
No 30
>smart00612 Kelch Kelch domain.
Probab=98.42 E-value=2.6e-07 Score=52.91 Aligned_cols=33 Identities=21% Similarity=0.342 Sum_probs=28.1
Q ss_pred EEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038 148 KLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY 184 (184)
Q Consensus 148 ~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m 184 (184)
+|||+||... ....+++++||+.+++|+.+++|
T Consensus 1 ~iyv~GG~~~----~~~~~~v~~yd~~~~~W~~~~~~ 33 (47)
T smart00612 1 KIYVVGGFDG----GQRLKSVEVYDPETNKWTPLPSM 33 (47)
T ss_pred CEEEEeCCCC----CceeeeEEEECCCCCeEccCCCC
Confidence 5899999853 34578999999999999999887
No 31
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.41 E-value=6.9e-07 Score=71.88 Aligned_cols=82 Identities=22% Similarity=0.324 Sum_probs=64.3
Q ss_pred cccEEEEEeeCCCCCCCceEEeecCC--CceecCCCCCCCCccCeEEEEECCEEEEEeeeecC-CCCCCCCCeEEEEeCC
Q 030038 98 LEEWLCILTMDPEGKQSQWEVLDCFG--NRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVI-DGTASASADVYQYDSC 174 (184)
Q Consensus 98 ~~~~lyv~gg~~~~~~~~~~~ydp~t--~~W~~lp~~p~~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~v~~ydp~ 174 (184)
.+..+||-.|... ..++..|... ..|+++...|..+|.+...++++++|||+||.... .......+++++|||.
T Consensus 45 ig~~~YVGLGs~G---~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~ 121 (381)
T COG3055 45 IGDTVYVGLGSAG---TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPS 121 (381)
T ss_pred ecceEEEEeccCC---ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCC
Confidence 4557898887533 4588887654 68999999998889888889999999999997321 1123467899999999
Q ss_pred CCCeecCC
Q 030038 175 LNRFGSVA 182 (184)
Q Consensus 175 t~~W~~~~ 182 (184)
+|+|.++.
T Consensus 122 ~nsW~kl~ 129 (381)
T COG3055 122 TNSWHKLD 129 (381)
T ss_pred CChhheec
Confidence 99999874
No 32
>PF13964 Kelch_6: Kelch motif
Probab=98.40 E-value=4.7e-07 Score=53.10 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=33.1
Q ss_pred ccccEEEEEeeCCC--CCCCceEEeecCCCceecCCCCCCC
Q 030038 97 LLEEWLCILTMDPE--GKQSQWEVLDCFGNRHRLLPLMPGP 135 (184)
Q Consensus 97 ~~~~~lyv~gg~~~--~~~~~~~~ydp~t~~W~~lp~~p~~ 135 (184)
..++.|||+||... ...+.+++||+.+++|..+++||.+
T Consensus 9 ~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 9 VVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred EECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCC
Confidence 46789999999755 2357899999999999999999975
No 33
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.36 E-value=5.1e-07 Score=73.89 Aligned_cols=120 Identities=13% Similarity=0.071 Sum_probs=84.9
Q ss_pred cCCccchhhHhhcchhhhhhhcchhhHHHHHhhc--ccccEEEEEeeCCCCC-----CCceEEeecCCCceecCCCCC--
Q 030038 63 LVPRSNFPAMGTVCKKWRSFIRSKEFITVRKLLG--LLEEWLCILTMDPEGK-----QSQWEVLDCFGNRHRLLPLMP-- 133 (184)
Q Consensus 63 rlp~~~~~~~~~Vsk~W~~l~~s~~~~~~r~~~~--~~~~~lyv~gg~~~~~-----~~~~~~ydp~t~~W~~lp~~p-- 133 (184)
+..+++++.+.++.+.|..|..- --...|+-+. +-...|++|||..+.. .+.+++||..+-+|..+.+.-
T Consensus 150 F~HYkD~W~fd~~trkweql~~~-g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~ 228 (521)
T KOG1230|consen 150 FHHYKDLWLFDLKTRKWEQLEFG-GGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAG 228 (521)
T ss_pred hhhhhheeeeeeccchheeeccC-CCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCC
Confidence 34567888899999999998522 1223454443 3456789999864321 478999999999999997632
Q ss_pred CCCccCeEEEEE-CCEEEEEeeeecCC-----CCCCCCCeEEEEeCCC-----CCeecCCC
Q 030038 134 GPVKVGFGVVVI-NGKLVVMAGYSVID-----GTASASADVYQYDSCL-----NRFGSVAF 183 (184)
Q Consensus 134 ~~~r~~~~~~~~-~~~lyv~GG~~~~~-----~~~~~~~~v~~ydp~t-----~~W~~~~~ 183 (184)
+.+|.||...+. +|.|||.||++... ......++++..+|.+ -.|.++-+
T Consensus 229 PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp 289 (521)
T KOG1230|consen 229 PTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKP 289 (521)
T ss_pred CCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccC
Confidence 224889888777 99999999985321 1223577899999998 56777643
No 34
>PF13854 Kelch_5: Kelch motif
Probab=98.33 E-value=1.9e-06 Score=48.69 Aligned_cols=41 Identities=32% Similarity=0.533 Sum_probs=33.3
Q ss_pred CCCCccCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCC
Q 030038 133 PGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLN 176 (184)
Q Consensus 133 p~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~ 176 (184)
|.+ |.+|++++++++||++||... ......+++|+||..++
T Consensus 2 P~~-R~~hs~~~~~~~iyi~GG~~~--~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 2 PSP-RYGHSAVVVGNNIYIFGGYSG--NNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCC-ccceEEEEECCEEEEEcCccC--CCCCEECcEEEEECCCC
Confidence 444 899999999999999999873 13567899999998763
No 35
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.32 E-value=1.7e-07 Score=54.49 Aligned_cols=42 Identities=29% Similarity=0.589 Sum_probs=34.9
Q ss_pred CCCChHHHHHHHhccCCccchhhHhhcchhhhhhhcchhhHH
Q 030038 49 LPGLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEFIT 90 (184)
Q Consensus 49 ~~~LP~dl~~~il~rlp~~~~~~~~~Vsk~W~~l~~s~~~~~ 90 (184)
|..||+|++.+|+.+++..++..++.|||+|+.++.+..+..
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~ 44 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWK 44 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccH
Confidence 457999999999999999999999999999999998876543
No 36
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.30 E-value=4e-07 Score=50.82 Aligned_cols=38 Identities=34% Similarity=0.739 Sum_probs=34.8
Q ss_pred ChHHHHHHHhccCCccchhhHhhcchhhhhhhcchhhH
Q 030038 52 LPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEFI 89 (184)
Q Consensus 52 LP~dl~~~il~rlp~~~~~~~~~Vsk~W~~l~~s~~~~ 89 (184)
||+|++.+|+.+++..++.+++.|||+|+.++..+.+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~ 38 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFW 38 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhh
Confidence 79999999999999999999999999999999776553
No 37
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.26 E-value=2.8e-06 Score=49.57 Aligned_cols=44 Identities=18% Similarity=0.177 Sum_probs=36.4
Q ss_pred cEEEEEeeCCC---CCCCceEEeecCCCceecCCCCCCCCccCeEEEE
Q 030038 100 EWLCILTMDPE---GKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVV 144 (184)
Q Consensus 100 ~~lyv~gg~~~---~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~ 144 (184)
+.+||+||... ...+++++||+.+++|++++.+|.+ |.+|++++
T Consensus 2 ~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~-R~~h~~~~ 48 (49)
T PF13415_consen 2 NKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPP-RSGHTATV 48 (49)
T ss_pred CEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCC-ccceEEEE
Confidence 56999999762 2257899999999999999998887 88888765
No 38
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.22 E-value=2e-06 Score=50.21 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=30.2
Q ss_pred CCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCCCC
Q 030038 146 NGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVAFY 184 (184)
Q Consensus 146 ~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~~m 184 (184)
+++|||+||.... .....+++++||+.+++|++++++
T Consensus 1 g~~~~vfGG~~~~--~~~~~nd~~~~~~~~~~W~~~~~~ 37 (49)
T PF13415_consen 1 GNKLYVFGGYDDD--GGTRLNDVWVFDLDTNTWTRIGDL 37 (49)
T ss_pred CCEEEEECCcCCC--CCCEecCEEEEECCCCEEEECCCC
Confidence 5789999998731 256789999999999999998653
No 39
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.15 E-value=6.2e-07 Score=75.31 Aligned_cols=101 Identities=19% Similarity=0.262 Sum_probs=71.8
Q ss_pred hhhhhhcch-hhHHHHHhhc--ccccEEEEEeeCCCCCCCceEEeecCCCceecCC---CCCCCCccCeEEEEECCEEEE
Q 030038 78 KWRSFIRSK-EFITVRKLLG--LLEEWLCILTMDPEGKQSQWEVLDCFGNRHRLLP---LMPGPVKVGFGVVVINGKLVV 151 (184)
Q Consensus 78 ~W~~l~~s~-~~~~~r~~~~--~~~~~lyv~gg~~~~~~~~~~~ydp~t~~W~~lp---~~p~~~r~~~~~~~~~~~lyv 151 (184)
+|+++.++. ...+.|+-+. ...+.+.+|||.+++-..++++||..+++|..-. .+|.. ...|+.+..+.+|||
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpg-cAA~GfvcdGtrilv 96 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPG-CAAFGFVCDGTRILV 96 (830)
T ss_pred ceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCc-hhhcceEecCceEEE
Confidence 688886542 2334454433 3567788888887766678999999999998643 34444 456777888899999
Q ss_pred EeeeecCCCCCCCCCeEEEEeCCCCCeecCC
Q 030038 152 MAGYSVIDGTASASADVYQYDSCLNRFGSVA 182 (184)
Q Consensus 152 ~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~ 182 (184)
|||.... ...++++|-.....-.|+++.
T Consensus 97 FGGMvEY---GkYsNdLYELQasRWeWkrlk 124 (830)
T KOG4152|consen 97 FGGMVEY---GKYSNDLYELQASRWEWKRLK 124 (830)
T ss_pred EccEeee---ccccchHHHhhhhhhhHhhcC
Confidence 9998763 457777776666666777764
No 40
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=97.91 E-value=4.5e-06 Score=48.03 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=31.1
Q ss_pred ccccEEEEEeeCCC--CCCCceEEeecCCCceecCCCCC
Q 030038 97 LLEEWLCILTMDPE--GKQSQWEVLDCFGNRHRLLPLMP 133 (184)
Q Consensus 97 ~~~~~lyv~gg~~~--~~~~~~~~ydp~t~~W~~lp~~p 133 (184)
..++.||++||... .....+++||+.+++|+.+++||
T Consensus 9 ~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 9 VVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred EECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 46789999999754 23578999999999999999886
No 41
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.91 E-value=1.3e-05 Score=64.73 Aligned_cols=136 Identities=18% Similarity=0.190 Sum_probs=84.6
Q ss_pred CCCCCCCCChHHHHHHHhccCCccchhh------------HhhcchhhhhhhcchhhHH-HHHh--hcccccEEEEEeeC
Q 030038 44 LDSPLLPGLPDDVAKCILALVPRSNFPA------------MGTVCKKWRSFIRSKEFIT-VRKL--LGLLEEWLCILTMD 108 (184)
Q Consensus 44 ~~~~~~~~LP~dl~~~il~rlp~~~~~~------------~~~Vsk~W~~l~~s~~~~~-~r~~--~~~~~~~lyv~gg~ 108 (184)
.....+|.||.-+-.-.-+++--..+.- +.--+|.|..+.. |.- .|.+ ....+..||+++|.
T Consensus 25 ~~a~~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G~afy~ldL~~~~k~W~~~a~---FpG~~rnqa~~a~~~~kLyvFgG~ 101 (381)
T COG3055 25 AYAGQLPDLPVGFKNGAGALIGDTVYVGLGSAGTAFYVLDLKKPGKGWTKIAD---FPGGARNQAVAAVIGGKLYVFGGY 101 (381)
T ss_pred HhhccCCCCCccccccccceecceEEEEeccCCccceehhhhcCCCCceEccc---CCCcccccchheeeCCeEEEeecc
Confidence 3456777777554443333333223322 2335677777642 332 2322 23567889999986
Q ss_pred CCCC------CCceEEeecCCCceecCCCCCCCCccCeEEEEECC-EEEEEeeeecCC-----------CC---------
Q 030038 109 PEGK------QSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVING-KLVVMAGYSVID-----------GT--------- 161 (184)
Q Consensus 109 ~~~~------~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~-~lyv~GG~~~~~-----------~~--------- 161 (184)
.... .+.++.|||.+++|+.+....+....++..+.+++ +||++||.+... +.
T Consensus 102 Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~ 181 (381)
T COG3055 102 GKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKII 181 (381)
T ss_pred ccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHH
Confidence 3221 36789999999999999854332245677777887 999999975320 00
Q ss_pred ----------CCCCCeEEEEeCCCCCeecCC
Q 030038 162 ----------ASASADVYQYDSCLNRFGSVA 182 (184)
Q Consensus 162 ----------~~~~~~v~~ydp~t~~W~~~~ 182 (184)
-.....|..|||.++.|+.+.
T Consensus 182 ~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G 212 (381)
T COG3055 182 AHYFDKKAEDYFFNKEVLSYDPSTNQWRNLG 212 (381)
T ss_pred HHHhCCCHHHhcccccccccccccchhhhcC
Confidence 112457999999999998753
No 42
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.72 E-value=8.6e-05 Score=62.76 Aligned_cols=83 Identities=8% Similarity=0.007 Sum_probs=62.2
Q ss_pred ccEEEEEeeCCCCCCCceEEeecCCCceecCCC--CCCCCccCeEEEEECCEEEEEeeeecCC----------CCCCCCC
Q 030038 99 EEWLCILTMDPEGKQSQWEVLDCFGNRHRLLPL--MPGPVKVGFGVVVINGKLVVMAGYSVID----------GTASASA 166 (184)
Q Consensus 99 ~~~lyv~gg~~~~~~~~~~~ydp~t~~W~~lp~--~p~~~r~~~~~~~~~~~lyv~GG~~~~~----------~~~~~~~ 166 (184)
...+||.||...-.+..++.+|.++-.|.+... .++.+|..|..+++++|+||+||+.... ..+.+.+
T Consensus 215 ~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTs 294 (830)
T KOG4152|consen 215 KSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTS 294 (830)
T ss_pred cceEEEEcccccccccceeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeecc
Confidence 357899998765556789999999999988531 1111277888999999999999986531 1245677
Q ss_pred eEEEEeCCCCCeecC
Q 030038 167 DVYQYDSCLNRFGSV 181 (184)
Q Consensus 167 ~v~~ydp~t~~W~~~ 181 (184)
++-+.|..+..|..+
T Consensus 295 sl~clNldt~~W~tl 309 (830)
T KOG4152|consen 295 SLACLNLDTMAWETL 309 (830)
T ss_pred ceeeeeecchheeee
Confidence 888899999999865
No 43
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=97.48 E-value=0.00023 Score=41.35 Aligned_cols=37 Identities=16% Similarity=0.085 Sum_probs=29.9
Q ss_pred ccccEEEEEeeC--C--CCCCCceEEeecCCCceecCCCCC
Q 030038 97 LLEEWLCILTMD--P--EGKQSQWEVLDCFGNRHRLLPLMP 133 (184)
Q Consensus 97 ~~~~~lyv~gg~--~--~~~~~~~~~ydp~t~~W~~lp~~p 133 (184)
..++.|||+||. . ....+.+++||+.+++|+.+++++
T Consensus 9 ~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 9 VLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred EECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 567899999998 1 122478999999999999999864
No 44
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=97.46 E-value=8.1e-05 Score=43.15 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=22.2
Q ss_pred ccEEEEEeeCCCC--CCCceEEeecCCCceecCCCCCC
Q 030038 99 EEWLCILTMDPEG--KQSQWEVLDCFGNRHRLLPLMPG 134 (184)
Q Consensus 99 ~~~lyv~gg~~~~--~~~~~~~ydp~t~~W~~lp~~p~ 134 (184)
++.||++||.... ..+.++.||+.+++|++++++|.
T Consensus 12 ~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 12 DNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred CCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 4689999997542 35789999999999999988773
No 45
>PLN02772 guanylate kinase
Probab=97.27 E-value=0.0021 Score=53.44 Aligned_cols=60 Identities=20% Similarity=0.256 Sum_probs=46.2
Q ss_pred ccccEEEEEeeCCCC--CCCceEEeecCCCceecCC---CCCCCCccCeEEEEE-CCEEEEEeeeec
Q 030038 97 LLEEWLCILTMDPEG--KQSQWEVLDCFGNRHRLLP---LMPGPVKVGFGVVVI-NGKLVVMAGYSV 157 (184)
Q Consensus 97 ~~~~~lyv~gg~~~~--~~~~~~~ydp~t~~W~~lp---~~p~~~r~~~~~~~~-~~~lyv~GG~~~ 157 (184)
..+..+||+||..+. ..+.+++||..++.|.... ..|.+ |.+|+++++ +++|+|+++...
T Consensus 32 ~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~-r~GhSa~v~~~~rilv~~~~~~ 97 (398)
T PLN02772 32 TIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKP-CKGYSAVVLNKDRILVIKKGSA 97 (398)
T ss_pred EECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCC-CCcceEEEECCceEEEEeCCCC
Confidence 356789999987553 2468999999999999865 33444 889998888 678999987643
No 46
>PLN02772 guanylate kinase
Probab=97.01 E-value=0.0014 Score=54.48 Aligned_cols=43 Identities=26% Similarity=0.148 Sum_probs=35.2
Q ss_pred ccCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCC
Q 030038 137 KVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVA 182 (184)
Q Consensus 137 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~ 182 (184)
+.++.++++++++||+||... .....+.|++||..|++|....
T Consensus 25 ~~~~tav~igdk~yv~GG~~d---~~~~~~~v~i~D~~t~~W~~P~ 67 (398)
T PLN02772 25 KNRETSVTIGDKTYVIGGNHE---GNTLSIGVQILDKITNNWVSPI 67 (398)
T ss_pred CCcceeEEECCEEEEEcccCC---CccccceEEEEECCCCcEeccc
Confidence 566788999999999999764 1235789999999999998643
No 47
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=96.77 E-value=0.00078 Score=55.59 Aligned_cols=38 Identities=18% Similarity=0.467 Sum_probs=34.2
Q ss_pred CCCCChHHHHHHHhccCC-ccchhhHhhcchhhhhhhcc
Q 030038 48 LLPGLPDDVAKCILALVP-RSNFPAMGTVCKKWRSFIRS 85 (184)
Q Consensus 48 ~~~~LP~dl~~~il~rlp-~~~~~~~~~Vsk~W~~l~~s 85 (184)
.|.+||+||+..|..+|| ..++.++++||++||+-+..
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 588999999999999996 67899999999999998753
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.0013 Score=52.69 Aligned_cols=41 Identities=17% Similarity=0.401 Sum_probs=36.8
Q ss_pred CCCCChHHHHHHHhccCCccchhhHhhcchhhhhhhcchhh
Q 030038 48 LLPGLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEF 88 (184)
Q Consensus 48 ~~~~LP~dl~~~il~rlp~~~~~~~~~Vsk~W~~l~~s~~~ 88 (184)
.|..||||+++.||+.|+.+++..+..|||+|+.+......
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l 137 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL 137 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence 47899999999999999999999999999999999765443
No 49
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.68 E-value=0.0078 Score=48.33 Aligned_cols=42 Identities=24% Similarity=0.402 Sum_probs=35.8
Q ss_pred CCCChHHHHHHHhccCC-----ccchhhHhhcchhhhhhhcchhhHH
Q 030038 49 LPGLPDDVAKCILALVP-----RSNFPAMGTVCKKWRSFIRSKEFIT 90 (184)
Q Consensus 49 ~~~LP~dl~~~il~rlp-----~~~~~~~~~Vsk~W~~l~~s~~~~~ 90 (184)
|..||||++..||.++= ..++.++.+|||.|+..+..+++..
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR 153 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWR 153 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHH
Confidence 45899999999997664 4788999999999999998888764
No 50
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=94.89 E-value=0.069 Score=41.00 Aligned_cols=65 Identities=14% Similarity=0.083 Sum_probs=40.8
Q ss_pred CceEEeecCCCceecCCCCCCC----Cc--cCeEEEE--ECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCC
Q 030038 114 SQWEVLDCFGNRHRLLPLMPGP----VK--VGFGVVV--INGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVA 182 (184)
Q Consensus 114 ~~~~~ydp~t~~W~~lp~~p~~----~r--~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~ 182 (184)
..+.++||.|++|+.||+.+.. .. .+++... -+.||..+..... ......+++|+..+++|+.+.
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~----~~~~~~~~Vys~~~~~Wr~~~ 86 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSG----NRNQSEHQVYTLGSNSWRTIE 86 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecC----CCCCccEEEEEeCCCCccccc
Confidence 4588999999999999865431 01 1111111 1235665543321 113457999999999999875
No 51
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=94.72 E-value=0.02 Score=46.65 Aligned_cols=42 Identities=26% Similarity=0.565 Sum_probs=37.3
Q ss_pred CCCCCCh----HHHHHHHhccCCccchhhHhhcchhhhhhhcchhh
Q 030038 47 PLLPGLP----DDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKEF 88 (184)
Q Consensus 47 ~~~~~LP----~dl~~~il~rlp~~~~~~~~~Vsk~W~~l~~s~~~ 88 (184)
..+..|| +++++.||+.|...++..+..|||.|+.++..+-+
T Consensus 73 DFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~ 118 (499)
T KOG0281|consen 73 DFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGML 118 (499)
T ss_pred HHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchH
Confidence 3566889 99999999999999999999999999999987644
No 52
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=94.05 E-value=0.018 Score=49.10 Aligned_cols=83 Identities=14% Similarity=0.146 Sum_probs=59.5
Q ss_pred cccEEEEEeeCCC-CCCCceEEeecCCCceecCCC---CCCCCccCeEEEEECC--EEEEEeeeecCC--CCCCCCCeEE
Q 030038 98 LEEWLCILTMDPE-GKQSQWEVLDCFGNRHRLLPL---MPGPVKVGFGVVVING--KLVVMAGYSVID--GTASASADVY 169 (184)
Q Consensus 98 ~~~~lyv~gg~~~-~~~~~~~~ydp~t~~W~~lp~---~p~~~r~~~~~~~~~~--~lyv~GG~~~~~--~~~~~~~~v~ 169 (184)
..+++|+-||-+. .....++.|+-..+.|..+.. .|.. |.+|.++..-. |+|++|-+.+.. .....-++.|
T Consensus 271 ~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~-RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW 349 (723)
T KOG2437|consen 271 QTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGA-RSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFW 349 (723)
T ss_pred CCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcc-hhhhhhhhhhhHhHHhhhhhccccccccccccccceE
Confidence 3569999998643 234678899999999998753 4555 77777766444 899999764421 0123456899
Q ss_pred EEeCCCCCeecC
Q 030038 170 QYDSCLNRFGSV 181 (184)
Q Consensus 170 ~ydp~t~~W~~~ 181 (184)
+||-.++.|..+
T Consensus 350 ~FDi~~~~W~~l 361 (723)
T KOG2437|consen 350 RFDIDTNTWMLL 361 (723)
T ss_pred EEecCCceeEEe
Confidence 999999999865
No 53
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=93.73 E-value=0.1 Score=44.68 Aligned_cols=82 Identities=15% Similarity=0.136 Sum_probs=55.4
Q ss_pred ccEEEEEeeCCCC-------CCCceEEeecCCCceecCCCCCC-----CCccCeEEEEECCE--EEEEeeeecCCCCCCC
Q 030038 99 EEWLCILTMDPEG-------KQSQWEVLDCFGNRHRLLPLMPG-----PVKVGFGVVVINGK--LVVMAGYSVIDGTASA 164 (184)
Q Consensus 99 ~~~lyv~gg~~~~-------~~~~~~~ydp~t~~W~~lp~~p~-----~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~ 164 (184)
+..||++|.+-+. .-..++.||..++.|.-+.--.. ..-..|++++.+.+ |||+||+.-.. ....
T Consensus 324 ~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~-~e~~ 402 (723)
T KOG2437|consen 324 RRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTC-NEPQ 402 (723)
T ss_pred HhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccC-CCcc
Confidence 3468888865221 12568999999999998862111 11346777777766 99999985321 1234
Q ss_pred CCeEEEEeCCCCCeecC
Q 030038 165 SADVYQYDSCLNRFGSV 181 (184)
Q Consensus 165 ~~~v~~ydp~t~~W~~~ 181 (184)
..-++.||..-..|..+
T Consensus 403 f~GLYaf~~~~~~w~~l 419 (723)
T KOG2437|consen 403 FSGLYAFNCQCQTWKLL 419 (723)
T ss_pred ccceEEEecCCccHHHH
Confidence 56799999999999764
No 54
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=91.06 E-value=2.4 Score=33.96 Aligned_cols=64 Identities=13% Similarity=0.057 Sum_probs=42.4
Q ss_pred CceEEeecCCCceecCCCCCCCCccCeEEEEE-CCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCC
Q 030038 114 SQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVI-NGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVA 182 (184)
Q Consensus 114 ~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~ 182 (184)
..++.||..+.+|..+..- .. -.-..+... +++|||.|-+... ......+-.||..+++|..++
T Consensus 16 ~~lC~yd~~~~qW~~~g~~-i~-G~V~~l~~~~~~~Llv~G~ft~~---~~~~~~la~yd~~~~~w~~~~ 80 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNG-IS-GTVTDLQWASNNQLLVGGNFTLN---GTNSSNLATYDFKNQTWSSLG 80 (281)
T ss_pred CEEEEEECCCCEeecCCCC-ce-EEEEEEEEecCCEEEEEEeeEEC---CCCceeEEEEecCCCeeeecC
Confidence 4688999999999998742 11 011123334 6778887755431 224667899999999998764
No 55
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=90.42 E-value=2.4 Score=34.81 Aligned_cols=52 Identities=17% Similarity=0.047 Sum_probs=36.5
Q ss_pred ccEEEEEeeCCCCCCCceEEeecCCCceecCCCCCCCCccCeEEEEECCEEEEEeeee
Q 030038 99 EEWLCILTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYS 156 (184)
Q Consensus 99 ~~~lyv~gg~~~~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~lyv~GG~~ 156 (184)
+.+|+..... ....+||..+..-..+|.++.+ ...-..+.++++||++....
T Consensus 76 gskIv~~d~~-----~~t~vyDt~t~av~~~P~l~~p-k~~pisv~VG~~LY~m~~~~ 127 (342)
T PF07893_consen 76 GSKIVAVDQS-----GRTLVYDTDTRAVATGPRLHSP-KRCPISVSVGDKLYAMDRSP 127 (342)
T ss_pred CCeEEEEcCC-----CCeEEEECCCCeEeccCCCCCC-CcceEEEEeCCeEEEeeccC
Confidence 4556555433 3378999999998888887765 33334566799999998653
No 56
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=89.53 E-value=1.9 Score=32.98 Aligned_cols=63 Identities=22% Similarity=0.177 Sum_probs=42.2
Q ss_pred CceEEeecCCCceecCCCCCCCCccCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeec
Q 030038 114 SQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGS 180 (184)
Q Consensus 114 ~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~ 180 (184)
..+++|+..++.|+.+...+.........+.++|.||-+..... ......+..||..+.+|+.
T Consensus 70 ~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~----~~~~~~IvsFDl~~E~f~~ 132 (230)
T TIGR01640 70 SEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLK----TNPDYFIVSFDVSSERFKE 132 (230)
T ss_pred ccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECC----CCCcEEEEEEEcccceEee
Confidence 46789999999999988533221111124568999998864321 1112268899999999994
No 57
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=87.83 E-value=6.1 Score=27.34 Aligned_cols=79 Identities=15% Similarity=0.192 Sum_probs=49.6
Q ss_pred ccEEEEEeeCCCCCCCceEEeecCCCceecCCCC--CCCCccCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEE-eCCC
Q 030038 99 EEWLCILTMDPEGKQSQWEVLDCFGNRHRLLPLM--PGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQY-DSCL 175 (184)
Q Consensus 99 ~~~lyv~gg~~~~~~~~~~~ydp~t~~W~~lp~~--p~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~y-dp~t 175 (184)
++.+|-+..........+.+||..+.+|+.++.. +........++..+|+|.++.-.... ....-++|+. |...
T Consensus 5 nGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~---~~~~~~iWvLeD~~k 81 (129)
T PF08268_consen 5 NGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQG---EPDSIDIWVLEDYEK 81 (129)
T ss_pred CcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCC---CcceEEEEEeecccc
Confidence 4556666554323346788999999999988742 22223455677789999887543210 1123466766 5667
Q ss_pred CCeec
Q 030038 176 NRFGS 180 (184)
Q Consensus 176 ~~W~~ 180 (184)
++|.+
T Consensus 82 ~~Wsk 86 (129)
T PF08268_consen 82 QEWSK 86 (129)
T ss_pred ceEEE
Confidence 88875
No 58
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=87.69 E-value=1.4 Score=34.51 Aligned_cols=57 Identities=12% Similarity=0.114 Sum_probs=41.3
Q ss_pred cccEEEEEeeCCCCCCCceEEeecCC----CceecCCC-CCCCCccCeEEEE-ECCEEEEEeeee
Q 030038 98 LEEWLCILTMDPEGKQSQWEVLDCFG----NRHRLLPL-MPGPVKVGFGVVV-INGKLVVMAGYS 156 (184)
Q Consensus 98 ~~~~lyv~gg~~~~~~~~~~~ydp~t----~~W~~lp~-~p~~~r~~~~~~~-~~~~lyv~GG~~ 156 (184)
.++.+.+.||+.++ ...+..|+|.. ..|.+.+. |... |....+.. -||+++|+||..
T Consensus 76 ~dG~ll~tGG~~~G-~~~ir~~~p~~~~~~~~w~e~~~~m~~~-RWYpT~~~L~DG~vlIvGG~~ 138 (243)
T PF07250_consen 76 PDGRLLQTGGDNDG-NKAIRIFTPCTSDGTCDWTESPNDMQSG-RWYPTATTLPDGRVLIVGGSN 138 (243)
T ss_pred CCCCEEEeCCCCcc-ccceEEEecCCCCCCCCceECcccccCC-CccccceECCCCCEEEEeCcC
Confidence 45678888887653 35677888875 67988874 6665 76655555 589999999975
No 59
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=82.81 E-value=2.8 Score=32.86 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=39.6
Q ss_pred ceEEeecCCCceecCCCCCCCCccCe-EEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCC----CCeecCC
Q 030038 115 QWEVLDCFGNRHRLLPLMPGPVKVGF-GVVVINGKLVVMAGYSVIDGTASASADVYQYDSCL----NRFGSVA 182 (184)
Q Consensus 115 ~~~~ydp~t~~W~~lp~~p~~~r~~~-~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t----~~W~~~~ 182 (184)
.-..||+.+++++.+... .. -.+. +...-+|.+.++||... ....+..|+|.+ ..|.+.+
T Consensus 47 ~s~~yD~~tn~~rpl~v~-td-~FCSgg~~L~dG~ll~tGG~~~------G~~~ir~~~p~~~~~~~~w~e~~ 111 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQ-TD-TFCSGGAFLPDGRLLQTGGDND------GNKAIRIFTPCTSDGTCDWTESP 111 (243)
T ss_pred EEEEEecCCCcEEeccCC-CC-CcccCcCCCCCCCEEEeCCCCc------cccceEEEecCCCCCCCCceECc
Confidence 345899999999998743 22 1211 12235899999999743 245677888865 6787654
No 60
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=81.59 E-value=14 Score=30.29 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=29.1
Q ss_pred ceecCCCCCCCCcc------CeEEEEE-CCEEEEE-eeeecCCCCCCCCCeEEEEeCCCCCeecC
Q 030038 125 RHRLLPLMPGPVKV------GFGVVVI-NGKLVVM-AGYSVIDGTASASADVYQYDSCLNRFGSV 181 (184)
Q Consensus 125 ~W~~lp~~p~~~r~------~~~~~~~-~~~lyv~-GG~~~~~~~~~~~~~v~~ydp~t~~W~~~ 181 (184)
.|+.+|+.|..... -.+.+++ +..|||. -|. ..-.+.||..+.+|+++
T Consensus 159 ~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~---------~~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 159 SWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGR---------RWGTYSFDTESHEWRKH 214 (342)
T ss_pred eEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCC---------ceEEEEEEcCCcceeec
Confidence 79999875543111 1234455 5567773 221 02368899999999876
No 61
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=73.88 E-value=1.2 Score=39.01 Aligned_cols=44 Identities=20% Similarity=0.512 Sum_probs=39.0
Q ss_pred CCCCCCCCChHHHHHHHhccCCccchhhHhhcchhhhhhhcchh
Q 030038 44 LDSPLLPGLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRSKE 87 (184)
Q Consensus 44 ~~~~~~~~LP~dl~~~il~rlp~~~~~~~~~Vsk~W~~l~~s~~ 87 (184)
.....+..||.++...||..|+.+.+..++.||+.|+.++....
T Consensus 103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~ 146 (537)
T KOG0274|consen 103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDK 146 (537)
T ss_pred cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccc
Confidence 44668889999999999999999999999999999999986643
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=72.90 E-value=2.3 Score=35.98 Aligned_cols=40 Identities=10% Similarity=0.369 Sum_probs=35.3
Q ss_pred CCCCCCChHHHHHHHhccCCccchhhHhhcchhhhhhhcc
Q 030038 46 SPLLPGLPDDVAKCILALVPRSNFPAMGTVCKKWRSFIRS 85 (184)
Q Consensus 46 ~~~~~~LP~dl~~~il~rlp~~~~~~~~~Vsk~W~~l~~s 85 (184)
..+.-.||.|+...+|+.|..+++.+++.+|+.|+.++-+
T Consensus 69 ~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD 108 (483)
T KOG4341|consen 69 NSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALD 108 (483)
T ss_pred ccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhc
Confidence 4455589999999999999999999999999999998744
No 63
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=69.77 E-value=27 Score=27.76 Aligned_cols=50 Identities=20% Similarity=0.081 Sum_probs=32.1
Q ss_pred cEEEEEeeCCCCCCCceEEeecCCCceecCCCCCCCCccCeEEEEECCEEEEE
Q 030038 100 EWLCILTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVM 152 (184)
Q Consensus 100 ~~lyv~gg~~~~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~lyv~ 152 (184)
+.||.-.|... ...+..||+.+.+-..-.++|.. -.+=+++.++++||.+
T Consensus 56 g~LyESTG~yG--~S~l~~~d~~tg~~~~~~~l~~~-~FgEGit~~~d~l~qL 105 (264)
T PF05096_consen 56 GTLYESTGLYG--QSSLRKVDLETGKVLQSVPLPPR-YFGEGITILGDKLYQL 105 (264)
T ss_dssp TEEEEEECSTT--EEEEEEEETTTSSEEEEEE-TTT---EEEEEEETTEEEEE
T ss_pred CEEEEeCCCCC--cEEEEEEECCCCcEEEEEECCcc-ccceeEEEECCEEEEE
Confidence 44555444322 36788999999876555555654 4566788999999986
No 64
>PF13013 F-box-like_2: F-box-like domain
Probab=59.14 E-value=12 Score=25.59 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=23.8
Q ss_pred CCCCChHHHHHHHhccCCccchhhHhhcch
Q 030038 48 LLPGLPDDVAKCILALVPRSNFPAMGTVCK 77 (184)
Q Consensus 48 ~~~~LP~dl~~~il~rlp~~~~~~~~~Vsk 77 (184)
.+..||+||+..|+-.-....+......|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 477899999999999888777766655554
No 65
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=52.33 E-value=21 Score=28.86 Aligned_cols=42 Identities=17% Similarity=0.055 Sum_probs=23.1
Q ss_pred CceEEeecCCCce--ecCCCCCCCCccCeEEEEECCEEEEEeeee
Q 030038 114 SQWEVLDCFGNRH--RLLPLMPGPVKVGFGVVVINGKLVVMAGYS 156 (184)
Q Consensus 114 ~~~~~ydp~t~~W--~~lp~~p~~~r~~~~~~~~~~~lyv~GG~~ 156 (184)
.+++..|..-.-. +.+|.+... -..|...+-++.+|++||..
T Consensus 131 P~VfLiDleFGC~tah~lpEl~dG-~SFHvslar~D~VYilGGHs 174 (337)
T PF03089_consen 131 PQVFLIDLEFGCCTAHTLPELQDG-QSFHVSLARNDCVYILGGHS 174 (337)
T ss_pred CeEEEEeccccccccccchhhcCC-eEEEEEEecCceEEEEccEE
Confidence 3456666654432 233433332 22334445678999999964
No 66
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=52.15 E-value=37 Score=27.44 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=35.6
Q ss_pred CceEEeecCCCceecCCCCCCCCccCeEEEE-ECCEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCC
Q 030038 114 SQWEVLDCFGNRHRLLPLMPGPVKVGFGVVV-INGKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVA 182 (184)
Q Consensus 114 ~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~ 182 (184)
.+++.|||....|.+-+ +|......++.-+ -.+.++.. ....+.+.+|||+|-+.+.++
T Consensus 254 g~l~rfdPs~~sW~eyp-LPgs~arpys~rVD~~grVW~s---------ea~agai~rfdpeta~ftv~p 313 (353)
T COG4257 254 GSLHRFDPSVTSWIEYP-LPGSKARPYSMRVDRHGRVWLS---------EADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred ceeeEeCcccccceeee-CCCCCCCcceeeeccCCcEEee---------ccccCceeecCcccceEEEec
Confidence 56889999999999876 3433122222211 22344431 123456788999988887664
No 67
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=51.18 E-value=20 Score=29.58 Aligned_cols=38 Identities=26% Similarity=0.511 Sum_probs=31.5
Q ss_pred CCCCCChHHHHHHHhccCCc--------cchhhHhhcchhhhhhhc
Q 030038 47 PLLPGLPDDVAKCILALVPR--------SNFPAMGTVCKKWRSFIR 84 (184)
Q Consensus 47 ~~~~~LP~dl~~~il~rlp~--------~~~~~~~~Vsk~W~~l~~ 84 (184)
..|..||.+++.+|+-++.. .....+..||+.|+....
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~ 88 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISK 88 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhcc
Confidence 68999999999999998863 345667889999999754
No 68
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=47.16 E-value=33 Score=18.20 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=14.9
Q ss_pred EEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCC
Q 030038 141 GVVVINGKLVVMAGYSVIDGTASASADVYQYDSCL 175 (184)
Q Consensus 141 ~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t 175 (184)
+.++.++.||+.+. ...++++|+.|
T Consensus 16 ~~~v~~g~vyv~~~----------dg~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTG----------DGNLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-T----------TSEEEEEETT-
T ss_pred CCEEECCEEEEEcC----------CCEEEEEeCCC
Confidence 34667888888543 23688888764
No 69
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=43.10 E-value=1.4e+02 Score=22.18 Aligned_cols=56 Identities=13% Similarity=0.151 Sum_probs=31.6
Q ss_pred ccEEEEEeeCCCCCCCceEEeecCCCc------------eecCCCCCCCCccCeEEEEECCEEEEEeeeecCCCCCCCCC
Q 030038 99 EEWLCILTMDPEGKQSQWEVLDCFGNR------------HRLLPLMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASA 166 (184)
Q Consensus 99 ~~~lyv~gg~~~~~~~~~~~ydp~t~~------------W~~lp~~p~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~ 166 (184)
++.+|++.| ...+.||...++ |..+ |. ....+...-++++|.+-|.
T Consensus 110 ~~~~yfFkg------~~y~ry~~~~~~v~~~yP~~i~~~w~g~---p~--~idaa~~~~~~~~yfF~g~----------- 167 (194)
T cd00094 110 NGKTYFFKG------DKYWRYDEKTQKMDPGYPKLIETDFPGV---PD--KVDAAFRWLDGYYYFFKGD----------- 167 (194)
T ss_pred CCEEEEEeC------CEEEEEeCCCccccCCCCcchhhcCCCc---CC--CcceeEEeCCCcEEEEECC-----------
Confidence 456777765 346677754433 3222 21 1223333334889998764
Q ss_pred eEEEEeCCCC
Q 030038 167 DVYQYDSCLN 176 (184)
Q Consensus 167 ~v~~ydp~t~ 176 (184)
.+++||..++
T Consensus 168 ~y~~~d~~~~ 177 (194)
T cd00094 168 QYWRFDPRSK 177 (194)
T ss_pred EEEEEeCccc
Confidence 4778887665
No 70
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=43.03 E-value=76 Score=21.69 Aligned_cols=38 Identities=5% Similarity=0.010 Sum_probs=22.7
Q ss_pred CceEEeecCCC-ceecCCCCCC-------CCccCeEEEEECCEEEE
Q 030038 114 SQWEVLDCFGN-RHRLLPLMPG-------PVKVGFGVVVINGKLVV 151 (184)
Q Consensus 114 ~~~~~ydp~t~-~W~~lp~~p~-------~~r~~~~~~~~~~~lyv 151 (184)
.+++.||+.++ .|.+..+-+. +.+.-|.++.+++.-.|
T Consensus 11 A~V~~yd~~tKk~WvPs~~~~~~V~~y~~~~~ntfRIi~~~~~~~i 56 (111)
T cd01206 11 AHVFQIDPKTKKNWIPASKHAVTVSYFYDSTRNVYRIISVGGTKAI 56 (111)
T ss_pred eEEEEECCCCcceeEeCCCCceeEEEEecCCCcEEEEEEecCcEEE
Confidence 46899999875 8988764311 12334555555554333
No 71
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=37.47 E-value=86 Score=27.90 Aligned_cols=58 Identities=19% Similarity=0.021 Sum_probs=32.6
Q ss_pred EEEEeeCCCCCCCceEEeecCCCceecCCCCCCCCccCeEEEEEC--CEEEEEeeeecCCCCCCCCCeEEEEeCCCC
Q 030038 102 LCILTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVIN--GKLVVMAGYSVIDGTASASADVYQYDSCLN 176 (184)
Q Consensus 102 lyv~gg~~~~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~ 176 (184)
||+.|.. ..++.+|...++|..--.... .+.-++.++ +.|+++||-. ..|+.+||.+.
T Consensus 148 ly~~gsg-----~evYRlNLEqGrfL~P~~~~~---~~lN~v~in~~hgLla~Gt~~---------g~VEfwDpR~k 207 (703)
T KOG2321|consen 148 LYLVGSG-----SEVYRLNLEQGRFLNPFETDS---GELNVVSINEEHGLLACGTED---------GVVEFWDPRDK 207 (703)
T ss_pred EEEeecC-----cceEEEEcccccccccccccc---ccceeeeecCccceEEecccC---------ceEEEecchhh
Confidence 5555443 569999999998854221111 111223333 3467777754 35788887654
No 72
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=36.17 E-value=76 Score=25.46 Aligned_cols=105 Identities=15% Similarity=0.103 Sum_probs=56.7
Q ss_pred cchhhHhhcchhhhhhhcchhhHHHHHhhc-ccccEEEEEeeCC--CCCCCceEEeecCCCceecCCCC-----CCCCcc
Q 030038 67 SNFPAMGTVCKKWRSFIRSKEFITVRKLLG-LLEEWLCILTMDP--EGKQSQWEVLDCFGNRHRLLPLM-----PGPVKV 138 (184)
Q Consensus 67 ~~~~~~~~Vsk~W~~l~~s~~~~~~r~~~~-~~~~~lyv~gg~~--~~~~~~~~~ydp~t~~W~~lp~~-----p~~~r~ 138 (184)
..++.+....++|.++... +.-.-..+. ..+..||+.|... ......+..||..+++|..++.- |.+ ..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~--i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgp-v~ 92 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNG--ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGP-VT 92 (281)
T ss_pred CEEEEEECCCCEeecCCCC--ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCc-EE
Confidence 3444455567889888643 111111112 2356677777532 11246688999999999998862 332 11
Q ss_pred CeEEEEEC-CEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCC
Q 030038 139 GFGVVVIN-GKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVA 182 (184)
Q Consensus 139 ~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~ 182 (184)
.+.....+ +.+++.|... ....-+..|| -.+|..+.
T Consensus 93 a~~~~~~d~~~~~~aG~~~------~g~~~l~~~d--Gs~W~~i~ 129 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSA------NGSTFLMKYD--GSSWSSIG 129 (281)
T ss_pred EEEeeccCCceEEEeceec------CCCceEEEEc--CCceEecc
Confidence 11111123 3577776642 1244567774 44777654
No 73
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=31.55 E-value=2.1e+02 Score=23.80 Aligned_cols=77 Identities=12% Similarity=-0.072 Sum_probs=42.0
Q ss_pred cccEEEEEeeCCCCCCCceEEeecCCCceecCCCCCCCCccCeEEEEEC-CEEEEEeeeecCCCCCCCCCeEEEEeCCCC
Q 030038 98 LEEWLCILTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVIN-GKLVVMAGYSVIDGTASASADVYQYDSCLN 176 (184)
Q Consensus 98 ~~~~lyv~gg~~~~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~ 176 (184)
...++||.-....+-...+.++|..+.+-.. .++...+- .+..+-+ ..|||+-.+............|.+||..|.
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g--~i~~G~~P-~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~ 87 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLG--MTDGGFLP-NPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH 87 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEE--EEEccCCC-ceeECCCCCEEEEEeccccccccCCCCCEEEEEECccC
Confidence 3456788755321112678999988755332 22222111 1233333 468998763221112345678999999887
Q ss_pred C
Q 030038 177 R 177 (184)
Q Consensus 177 ~ 177 (184)
+
T Consensus 88 ~ 88 (352)
T TIGR02658 88 L 88 (352)
T ss_pred c
Confidence 5
No 74
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=30.45 E-value=40 Score=21.34 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=25.5
Q ss_pred CCCCCCCCChHHHHHHHhccCCccchhhHhhc
Q 030038 44 LDSPLLPGLPDDVAKCILALVPRSNFPAMGTV 75 (184)
Q Consensus 44 ~~~~~~~~LP~dl~~~il~rlp~~~~~~~~~V 75 (184)
.|+..+|++|+...+..-.|+...++..-..+
T Consensus 10 ~np~DiP~ipra~aeyLqvrfN~~yl~~sG~i 41 (77)
T PF10911_consen 10 DNPDDIPDIPRAAAEYLQVRFNAAYLMASGII 41 (77)
T ss_pred cCCcccCCccHHHHHHHHHHhcHHHHHHhhhH
Confidence 46889999999999999999887766554433
No 75
>PHA00441 hypothetical protein
Probab=30.30 E-value=18 Score=23.43 Aligned_cols=9 Identities=44% Similarity=0.826 Sum_probs=6.3
Q ss_pred eeeeccccc
Q 030038 16 MCFSTLTEL 24 (184)
Q Consensus 16 ~~~~~~~~~ 24 (184)
|||+|++.-
T Consensus 1 MCfsPKikt 9 (89)
T PHA00441 1 MCFSPKIKT 9 (89)
T ss_pred CCcCCcccC
Confidence 788777654
No 76
>PF03540 TFIID_30kDa: Transcription initiation factor TFIID 23-30kDa subunit; InterPro: IPR003923 Transcription initiation factor TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. The complex includes TATA binding protein (TBP) and various TBP-associated factors (TAFS). TFIID a bona fide RNA polymerase II-specific TATA-binding protein-associated factor (TAF) and is essential for viability []. TFIID acts to nucleate the transcription complex, recruiting the rest of the factors through a direct interaction with TFIIB. The TBP subunit of TFIID is sufficient for TATA-element binding and TFIIB interaction, and can support basal transcription. The protein belongs to the TAF2H family.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus
Probab=30.13 E-value=36 Score=19.82 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=13.2
Q ss_pred CCChHHHHHHHhccCC
Q 030038 50 PGLPDDVAKCILALVP 65 (184)
Q Consensus 50 ~~LP~dl~~~il~rlp 65 (184)
|-+||++..++|.+-=
T Consensus 1 P~IPD~v~~~yL~~~G 16 (51)
T PF03540_consen 1 PTIPDEVTDYYLERSG 16 (51)
T ss_pred CCCCHHHHHHHHHHCC
Confidence 5689999999997653
No 77
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=29.06 E-value=2.3e+02 Score=24.42 Aligned_cols=57 Identities=12% Similarity=0.127 Sum_probs=31.9
Q ss_pred ceEEeecCCCceecCCCCCCCCccCeEEEEEC--CEEEEEeeeecCCCCCCCCCeEEEEeCCCCCeecCC
Q 030038 115 QWEVLDCFGNRHRLLPLMPGPVKVGFGVVVIN--GKLVVMAGYSVIDGTASASADVYQYDSCLNRFGSVA 182 (184)
Q Consensus 115 ~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~W~~~~ 182 (184)
++.+||....+ .++.++.....+-....+| |...+++|.+ -.|+.|+..+..|+.+.
T Consensus 412 ~V~lwDLRKl~--n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~---------l~Vy~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 412 SVKLWDLRKLK--NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD---------LQVYICKKKTKSWTEIK 470 (506)
T ss_pred eEEEEEehhhc--ccceeeccccccceeEEEcCCCCeEEeecce---------eEEEEEecccccceeee
Confidence 37888876543 3333332211111222232 5566666543 46888999999999864
No 78
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=26.84 E-value=1.1e+02 Score=24.62 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=22.4
Q ss_pred CCCCCCCChHHHHHHHhccCC-ccchhhHh
Q 030038 45 DSPLLPGLPDDVAKCILALVP-RSNFPAMG 73 (184)
Q Consensus 45 ~~~~~~~LP~dl~~~il~rlp-~~~~~~~~ 73 (184)
....+..||.+++.+|+.|+| ..++..+.
T Consensus 198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~a 227 (332)
T KOG3926|consen 198 AGLTLHDLPLECVLNILLRLSDHRDLESLA 227 (332)
T ss_pred CCCCcccchHHHHHHHHHHccCcchHHHHH
Confidence 456788999999999999998 44554443
No 79
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=26.28 E-value=25 Score=20.83 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=9.8
Q ss_pred EEEeCCCCCeec
Q 030038 169 YQYDSCLNRFGS 180 (184)
Q Consensus 169 ~~ydp~t~~W~~ 180 (184)
..||+.|+.|..
T Consensus 21 r~YD~~Tr~W~F 32 (55)
T PF07443_consen 21 RNYDPKTRKWNF 32 (55)
T ss_pred cccCccceeeee
Confidence 358999999974
No 80
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=26.18 E-value=2e+02 Score=26.17 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=32.7
Q ss_pred CceEEeecCCCceecCC--CCCCCCccCeEEEEECCEEEEEeeeecCCCCCCCCCeEEEEeCCC
Q 030038 114 SQWEVLDCFGNRHRLLP--LMPGPVKVGFGVVVINGKLVVMAGYSVIDGTASASADVYQYDSCL 175 (184)
Q Consensus 114 ~~~~~ydp~t~~W~~lp--~~p~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t 175 (184)
..+.+|+|.++.- .+. +-|...|..--+-+++|.+.++-|++. .....+.+||..+
T Consensus 742 g~~rVy~Prs~e~-pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk-----~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 742 GTLRVYEPRSREQ-PVYEGKGPVGTRGARILWACDGRIVIVVGFDK-----SSERQVQMYDAQT 799 (1012)
T ss_pred ceEEEeCCCCCCC-ccccCCCCccCcceeEEEEecCcEEEEecccc-----cchhhhhhhhhhh
Confidence 5688999987531 121 112222322234558999888888853 3556677777654
No 81
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=25.95 E-value=44 Score=21.81 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=21.3
Q ss_pred CCCCCCChHHHHHHHhccCCccchh
Q 030038 46 SPLLPGLPDDVAKCILALVPRSNFP 70 (184)
Q Consensus 46 ~~~~~~LP~dl~~~il~rlp~~~~~ 70 (184)
...|..||.|+-..||..|+-.++.
T Consensus 69 ~~~w~~LP~EIk~~Il~~L~~~dL~ 93 (97)
T PF09372_consen 69 NNYWNILPIEIKYKILEYLSNKDLK 93 (97)
T ss_pred CCchhhCCHHHHHHHHHcCCHHHHH
Confidence 4789999999999999999866553
No 82
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=24.77 E-value=1.1e+02 Score=25.41 Aligned_cols=32 Identities=19% Similarity=0.318 Sum_probs=20.3
Q ss_pred CCEEEEEeeeecCCCCCCCCCeEEEEeCCCCC
Q 030038 146 NGKLVVMAGYSVIDGTASASADVYQYDSCLNR 177 (184)
Q Consensus 146 ~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~~ 177 (184)
.+.|||+.-....+.......+||+||..|++
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k 280 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK 280 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTE
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCe
Confidence 57999986211111234567899999999875
No 83
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=23.86 E-value=4.1e+02 Score=21.85 Aligned_cols=69 Identities=13% Similarity=0.066 Sum_probs=36.7
Q ss_pred ccccEEEEEeeCCCCCCCceEEeecCCC--ceecCCCCCC-------CCccCeEEEEECCEEEEEeeeecCCCCCCCCCe
Q 030038 97 LLEEWLCILTMDPEGKQSQWEVLDCFGN--RHRLLPLMPG-------PVKVGFGVVVINGKLVVMAGYSVIDGTASASAD 167 (184)
Q Consensus 97 ~~~~~lyv~gg~~~~~~~~~~~ydp~t~--~W~~lp~~p~-------~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~ 167 (184)
..++.+|+.... ..+++||..+. .|+.-..-.. ......+.++.+++||+.+. ...
T Consensus 67 v~~~~vy~~~~~-----g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~----------~g~ 131 (394)
T PRK11138 67 VAYNKVYAADRA-----GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE----------KGQ 131 (394)
T ss_pred EECCEEEEECCC-----CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC----------CCE
Confidence 356677776542 35889998764 5874221100 00112234566788887432 124
Q ss_pred EEEEeCCCC--Ceec
Q 030038 168 VYQYDSCLN--RFGS 180 (184)
Q Consensus 168 v~~ydp~t~--~W~~ 180 (184)
++.+|..|+ .|+.
T Consensus 132 l~ald~~tG~~~W~~ 146 (394)
T PRK11138 132 VYALNAEDGEVAWQT 146 (394)
T ss_pred EEEEECCCCCCcccc
Confidence 677776655 4543
No 84
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=23.83 E-value=3.4e+02 Score=21.57 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=26.4
Q ss_pred CceEEeecCCCceecCCCCCCCCccCeEEEEECCEEEEEeee
Q 030038 114 SQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVINGKLVVMAGY 155 (184)
Q Consensus 114 ~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~~~~lyv~GG~ 155 (184)
.++.+||..++.-.++.-+... +.+-..+.+.+...|.|..
T Consensus 123 ~s~r~wDCRS~s~ePiQildea-~D~V~Si~v~~heIvaGS~ 163 (307)
T KOG0316|consen 123 SSVRLWDCRSRSFEPIQILDEA-KDGVSSIDVAEHEIVAGSV 163 (307)
T ss_pred ceeEEEEcccCCCCccchhhhh-cCceeEEEecccEEEeecc
Confidence 5688899998887776655544 4454555566666665543
No 85
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=23.79 E-value=3.2e+02 Score=20.59 Aligned_cols=20 Identities=10% Similarity=0.024 Sum_probs=11.9
Q ss_pred EEEEeeCCCCCCCceEEeecCCCc
Q 030038 102 LCILTMDPEGKQSQWEVLDCFGNR 125 (184)
Q Consensus 102 lyv~gg~~~~~~~~~~~ydp~t~~ 125 (184)
+|+.++.. ..+.+||+.+++
T Consensus 3 ~~~s~~~d----~~v~~~d~~t~~ 22 (300)
T TIGR03866 3 AYVSNEKD----NTISVIDTATLE 22 (300)
T ss_pred EEEEecCC----CEEEEEECCCCc
Confidence 45554432 357888887654
No 86
>COG5469 Predicted metal-binding protein [Function unknown]
Probab=23.19 E-value=32 Score=24.38 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=18.1
Q ss_pred CCCCChHHHHHHHhccCCccc
Q 030038 48 LLPGLPDDVAKCILALVPRSN 68 (184)
Q Consensus 48 ~~~~LP~dl~~~il~rlp~~~ 68 (184)
-|.++|+.|..-||+|+|...
T Consensus 118 pw~~rPe~Lk~~ilArIPp~~ 138 (143)
T COG5469 118 PWRKRPEPLKRGILARIPPGD 138 (143)
T ss_pred ccccCChhHhcceeeecCCcc
Confidence 466999999999999999654
No 87
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=20.87 E-value=3.1e+02 Score=20.75 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=36.5
Q ss_pred ccEEEEEeeCCCCCCCceEEeecCCCceecCCCCCCCCccCeEEEEE--CCEEEEEeeeecCCCCCCCCCeEEEEeCCCC
Q 030038 99 EEWLCILTMDPEGKQSQWEVLDCFGNRHRLLPLMPGPVKVGFGVVVI--NGKLVVMAGYSVIDGTASASADVYQYDSCLN 176 (184)
Q Consensus 99 ~~~lyv~gg~~~~~~~~~~~ydp~t~~W~~lp~~p~~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~v~~ydp~t~ 176 (184)
++.||+.--. ...++.+|+.++.-..+.. +.+ .+++.. ++.+||.... ...++|+.++
T Consensus 11 ~g~l~~~D~~----~~~i~~~~~~~~~~~~~~~-~~~----~G~~~~~~~g~l~v~~~~-----------~~~~~d~~~g 70 (246)
T PF08450_consen 11 DGRLYWVDIP----GGRIYRVDPDTGEVEVIDL-PGP----NGMAFDRPDGRLYVADSG-----------GIAVVDPDTG 70 (246)
T ss_dssp TTEEEEEETT----TTEEEEEETTTTEEEEEES-SSE----EEEEEECTTSEEEEEETT-----------CEEEEETTTT
T ss_pred CCEEEEEEcC----CCEEEEEECCCCeEEEEec-CCC----ceEEEEccCCEEEEEEcC-----------ceEEEecCCC
Confidence 4567766432 2568999999886654332 211 233443 6888887532 2345577777
Q ss_pred CeecC
Q 030038 177 RFGSV 181 (184)
Q Consensus 177 ~W~~~ 181 (184)
+++.+
T Consensus 71 ~~~~~ 75 (246)
T PF08450_consen 71 KVTVL 75 (246)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 66644
No 88
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=20.35 E-value=81 Score=21.86 Aligned_cols=16 Identities=25% Similarity=0.466 Sum_probs=13.6
Q ss_pred CeEEEEeCCCCCeecC
Q 030038 166 ADVYQYDSCLNRFGSV 181 (184)
Q Consensus 166 ~~v~~ydp~t~~W~~~ 181 (184)
..+|.||..+++|.+.
T Consensus 29 v~vY~f~~~~~~W~K~ 44 (122)
T PF06058_consen 29 VVVYKFDHETNEWEKT 44 (122)
T ss_dssp EEEEEEETTTTEEEEE
T ss_pred EEEEeecCCCCcEeec
Confidence 4689999999999874
Done!