BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030039
         (184 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1KV0|A Chain A, CisTRANS ISOMERIZATION OF NON-Prolyl Peptide Bond
          Observed In Crystal Structure Of An Scorpion Toxin
 pdb|1KV0|B Chain B, CisTRANS ISOMERIZATION OF NON-Prolyl Peptide Bond
          Observed In Crystal Structure Of An Scorpion Toxin
          Length = 66

 Score = 27.3 bits (59), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 7  DEFSSLPQTTTTGILMLNYRYQNRVKNKNSWSSGLCDCFSDYKNCCITCWC 57
          D + +LP     G   LN  Y N +  K+    G C+    Y N    CWC
Sbjct: 3  DGYIALPHNCAYG--CLNNEYCNNLCTKDGAKIGYCNIVGKYGN---ACWC 48


>pdb|1P9M|A Chain A, Crystal Structure Of The Hexameric Human Il-6/il-6 Alpha
           Receptor/gp130 Complex
          Length = 299

 Score = 26.9 bits (58), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 5/43 (11%)

Query: 1   MSSIKPDEFSSLPQTTTT-----GILMLNYRYQNRVKNKNSWS 38
           +S I  +E SS+ + T T      +++L Y  Q R K+ ++WS
Sbjct: 206 LSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWS 248


>pdb|1I1R|A Chain A, Crystal Structure Of A CytokineRECEPTOR COMPLEX
          Length = 303

 Score = 26.9 bits (58), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 5/43 (11%)

Query: 1   MSSIKPDEFSSLPQTTTT-----GILMLNYRYQNRVKNKNSWS 38
           +S I  +E SS+ + T T      +++L Y  Q R K+ ++WS
Sbjct: 206 LSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWS 248


>pdb|3L5H|A Chain A, Crystal Structure Of The Full Ectodomain Of Human Gp130:
           New Insights Into The Molecular Assembly Of Receptor
           Complexes
          Length = 589

 Score = 26.6 bits (57), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 5/43 (11%)

Query: 1   MSSIKPDEFSSLPQTTTT-----GILMLNYRYQNRVKNKNSWS 38
           +S I  +E SS+ + T T      +++L Y  Q R K+ ++WS
Sbjct: 205 LSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWS 247


>pdb|1PVH|A Chain A, Crystal Structure Of Leukemia Inhibitory Factor In Complex
           With Gp130
 pdb|1PVH|C Chain C, Crystal Structure Of Leukemia Inhibitory Factor In Complex
           With Gp130
          Length = 201

 Score = 26.6 bits (57), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 5/43 (11%)

Query: 1   MSSIKPDEFSSLPQTTTT-----GILMLNYRYQNRVKNKNSWS 38
           +S I  +E SS+ + T T      +++L Y  Q R K+ ++WS
Sbjct: 106 LSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWS 148


>pdb|1BQU|A Chain A, Cytokyne-Binding Region Of Gp130
 pdb|1BQU|B Chain B, Cytokyne-Binding Region Of Gp130
          Length = 215

 Score = 26.2 bits (56), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 5/43 (11%)

Query: 1   MSSIKPDEFSSLPQTTTT-----GILMLNYRYQNRVKNKNSWS 38
           +S I  +E SS+ + T T      +++L Y  Q R K+ ++WS
Sbjct: 110 LSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWS 152


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.132    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,457,282
Number of Sequences: 62578
Number of extensions: 138841
Number of successful extensions: 209
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 206
Number of HSP's gapped (non-prelim): 21
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)