Query 030039
Match_columns 184
No_of_seqs 103 out of 733
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 07:34:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030039.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030039hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01571 A_thal_Cys_rich unch 100.0 3.7E-33 8E-38 210.3 5.3 104 35-138 1-104 (104)
2 PF04749 PLAC8: PLAC8 family; 100.0 1.3E-29 2.7E-34 187.8 4.3 99 37-136 1-106 (106)
3 PF05835 Synaphin: Synaphin pr 68.4 3 6.5E-05 33.3 1.5 17 99-115 63-79 (139)
4 PF04749 PLAC8: PLAC8 family; 36.8 20 0.00043 25.7 1.3 24 116-139 13-36 (106)
5 PF06570 DUF1129: Protein of u 27.3 31 0.00067 28.4 1.1 18 96-113 189-206 (206)
6 PF14714 KH_dom-like: KH-domai 21.1 71 0.0015 22.7 1.8 20 96-115 56-75 (80)
7 PF14596 STAT6_C: STAT6 C-term 20.3 27 0.00058 28.9 -0.6 34 140-179 120-153 (199)
8 KOG3657 Mitochondrial DNA poly 18.7 64 0.0014 33.2 1.5 23 97-119 249-273 (1075)
9 PF06679 DUF1180: Protein of u 15.9 29 0.00063 28.4 -1.4 21 97-117 116-138 (163)
10 PF02677 DUF208: Uncharacteriz 13.7 51 0.0011 27.3 -0.5 24 119-143 2-25 (176)
No 1
>TIGR01571 A_thal_Cys_rich uncharacterized Cys-rich domain. This model describes an uncharacterized domain of about 100 residues. It is common in plants but found also in Homo sapiens, Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=99.98 E-value=3.7e-33 Score=210.29 Aligned_cols=104 Identities=44% Similarity=0.927 Sum_probs=93.7
Q ss_pred CCCCcCCccccCCcccccCccchhhHhhHHHHHHhcCCCCCCcchhhHhhhhhhhcCCCCCcchhHHHHHHHHhCCCCCC
Q 030039 35 NSWSSGLCDCFSDYKNCCITCWCPCMTFGQIAEIVDKGSSSCGVNGALCALMCCVTCCPCCYTCFYRSKMRKQYTLKKKP 114 (184)
Q Consensus 35 ~~W~~GLf~Cc~D~~~C~~s~~CPC~~~g~~a~rl~~G~~~C~~~~~l~~~l~~~~gc~~i~~~~~R~~IR~kygI~Gs~ 114 (184)
++|++|||||++|+++|++++||||+++|++++|++++..+|...++++.+++.+.++.+++.+.+|++||+||||+||.
T Consensus 1 ~~W~~gL~dC~~d~~~C~~~~~CPc~~~g~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~R~~~R~ry~i~gs~ 80 (104)
T TIGR01571 1 SNWSTGLFDCCEDIRLCLCGLFCPCCLFGQIAETLGTFAGECLCGGLTAIAMSALCGFCGCYTCFIRIKLREKYGIQGAP 80 (104)
T ss_pred CCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCCC
Confidence 58999999999999999999999999999999999977777877666566555555666788899999999999999999
Q ss_pred ccchhhhhcChhHHhhHHHHHHHh
Q 030039 115 CCDCLVHCCCLHCALCQEHRELRN 138 (184)
Q Consensus 115 ~~Dc~~~~cC~~CaL~Q~~RElk~ 138 (184)
++|+++++||++|+++|++||||.
T Consensus 81 ~~D~~~~~~C~~C~lcQ~~RElk~ 104 (104)
T TIGR01571 81 CDDCLTHLFCCFCALCQEHRELKM 104 (104)
T ss_pred cccchHHHHhhhHHHHHHHHHHhC
Confidence 999999999999999999999984
No 2
>PF04749 PLAC8: PLAC8 family; InterPro: IPR006461 This group of sequences are described by a region of about 170 amino acids. These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. It is common in plants but found also in Homo sapiens (Human), Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=99.96 E-value=1.3e-29 Score=187.83 Aligned_cols=99 Identities=46% Similarity=1.105 Sum_probs=82.6
Q ss_pred CCcCCccccCCcccccCccchhhHhhHHHHHHhcCCC-------CCCcchhhHhhhhhhhcCCCCCcchhHHHHHHHHhC
Q 030039 37 WSSGLCDCFSDYKNCCITCWCPCMTFGQIAEIVDKGS-------SSCGVNGALCALMCCVTCCPCCYTCFYRSKMRKQYT 109 (184)
Q Consensus 37 W~~GLf~Cc~D~~~C~~s~~CPC~~~g~~a~rl~~G~-------~~C~~~~~l~~~l~~~~gc~~i~~~~~R~~IR~kyg 109 (184)
|++|||||++|+++|++++||||++++++++|++++. ..|....+++.+..++ ++.+++.+.+|++||+|||
T Consensus 1 W~~gl~~C~~d~~~c~~~~~cPc~~~~~~~~~l~~~~~~~~~~~~~C~~~~~~~~~~~~~-~l~~~~~~~~R~~iR~ry~ 79 (106)
T PF04749_consen 1 WSTGLCDCFSDPGSCCLACFCPCCSFGQNAERLGDGPRSRGPAFGSCCLCFCCFGCAACL-GLGWCYGCSLRQQIRERYG 79 (106)
T ss_pred CCCCCCCcCCChHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCccHHHHHHHHHHHHHH-HHhHhhhhhHHHHHHHHhC
Confidence 9999999999999999999999999999999998754 3343333333322222 3345578899999999999
Q ss_pred CCCCCccchhhhhcChhHHhhHHHHHH
Q 030039 110 LKKKPCCDCLVHCCCLHCALCQEHREL 136 (184)
Q Consensus 110 I~Gs~~~Dc~~~~cC~~CaL~Q~~REl 136 (184)
|+||.++|+++++||++|||+|++|||
T Consensus 80 I~g~~~~D~~~~~~C~~Cal~Q~~rEl 106 (106)
T PF04749_consen 80 IQGSCCEDCCCSCCCPPCALCQEAREL 106 (106)
T ss_pred CCCCChhhhHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999996
No 3
>PF05835 Synaphin: Synaphin protein; InterPro: IPR008849 This family consists of several eukaryotic synaphin 1 and 2 proteins. Synaphin/complexin is a cytosolic protein that preferentially binds to syntaxin within the SNARE complex. Synaphin promotes SNAREs to form precomplexes that oligomerise into higher order structures. A peptide from the central, syntaxin binding domain of synaphin competitively inhibits these two proteins from interacting and prevents SNARE complexes from oligomerising. It is thought that oligomerisation of SNARE complexes into a higher order structure creates a SNARE scaffold for efficient, regulated fusion of synaptic vesicles []. Synaphin promotes neuronal exocytosis by promoting interaction between the complementary syntaxin and synaptobrevin transmembrane regions that reside in opposing membranes prior to fusion [].; GO: 0019905 syntaxin binding, 0006836 neurotransmitter transport; PDB: 3RL0_m 3RK3_E 1L4A_E 1KIL_E.
Probab=68.42 E-value=3 Score=33.31 Aligned_cols=17 Identities=41% Similarity=0.550 Sum_probs=10.2
Q ss_pred hHHHHHHHHhCCCCCCc
Q 030039 99 FYRSKMRKQYTLKKKPC 115 (184)
Q Consensus 99 ~~R~~IR~kygI~Gs~~ 115 (184)
..|..||.||||+.+--
T Consensus 63 ~mRq~IRdKY~l~k~e~ 79 (139)
T PF05835_consen 63 KMRQHIRDKYGLKKKEE 79 (139)
T ss_dssp HHHHHHHHHHT------
T ss_pred HHHHHHHhhcccccccc
Confidence 48999999999998643
No 4
>PF04749 PLAC8: PLAC8 family; InterPro: IPR006461 This group of sequences are described by a region of about 170 amino acids. These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. It is common in plants but found also in Homo sapiens (Human), Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.
Probab=36.83 E-value=20 Score=25.70 Aligned_cols=24 Identities=25% Similarity=0.674 Sum_probs=14.5
Q ss_pred cchhhhhcChhHHhhHHHHHHHhc
Q 030039 116 CDCLVHCCCLHCALCQEHRELRNR 139 (184)
Q Consensus 116 ~Dc~~~~cC~~CaL~Q~~RElk~r 139 (184)
.-++.++||+++++.|..+.++..
T Consensus 13 ~~c~~~~~cPc~~~~~~~~~l~~~ 36 (106)
T PF04749_consen 13 GSCCLACFCPCCSFGQNAERLGDG 36 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC
Confidence 344556666666666666666544
No 5
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=27.26 E-value=31 Score=28.45 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=15.5
Q ss_pred cchhHHHHHHHHhCCCCC
Q 030039 96 YTCFYRSKMRKQYTLKKK 113 (184)
Q Consensus 96 ~~~~~R~~IR~kygI~Gs 113 (184)
.....|.-+|+||||+|+
T Consensus 189 i~~~~~~~lkkk~~i~~~ 206 (206)
T PF06570_consen 189 IAFALRFYLKKKYNITGS 206 (206)
T ss_pred HHHHHHHHHHHHhCCCCC
Confidence 456799999999999985
No 6
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=21.08 E-value=71 Score=22.69 Aligned_cols=20 Identities=15% Similarity=0.551 Sum_probs=13.2
Q ss_pred cchhHHHHHHHHhCCCCCCc
Q 030039 96 YTCFYRSKMRKQYTLKKKPC 115 (184)
Q Consensus 96 ~~~~~R~~IR~kygI~Gs~~ 115 (184)
|.=.+..+||+.||++|..+
T Consensus 56 Y~ryL~n~lRe~f~f~G~Pi 75 (80)
T PF14714_consen 56 YKRYLENQLREAFGFEGVPI 75 (80)
T ss_dssp HHHHHHHHHHHHH--TTS--
T ss_pred HHHHHHHHHHHHCCCCceeE
Confidence 34458899999999999864
No 7
>PF14596 STAT6_C: STAT6 C-terminal; PDB: 1OJ5_B.
Probab=20.25 E-value=27 Score=28.89 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=2.2
Q ss_pred CCCCCCccccccccccccccccccCCCCCCCCCCCCccCC
Q 030039 140 GFDMNTGWHGNVEKETRGVAMTQMAPITPMAPLPPVIEES 179 (184)
Q Consensus 140 ~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (184)
+..|.+-|-+.+.-+|||+-- -| ..||+||+||-
T Consensus 120 ~~fpq~twv~~~~~~~~~~~e-dm-----fPpLlPPTeQD 153 (199)
T PF14596_consen 120 GGFPQGTWVGEVGLGNRTIHE-DM-----FPPLLPPTEQD 153 (199)
T ss_dssp -------------------------------------HHH
T ss_pred cCcCCcccccccccccccccc-cc-----cCCCCCccHHH
Confidence 345556799999999999841 13 46889999984
No 8
>KOG3657 consensus Mitochondrial DNA polymerase gamma, catalytic subunit [Replication, recombination and repair]
Probab=18.74 E-value=64 Score=33.16 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=17.8
Q ss_pred chhHHHHHHHHhCCCCCC--ccchh
Q 030039 97 TCFYRSKMRKQYTLKKKP--CCDCL 119 (184)
Q Consensus 97 ~~~~R~~IR~kygI~Gs~--~~Dc~ 119 (184)
..+=|.+|||.|+|+||. +-|-.
T Consensus 249 VsfDRaRirEeY~i~~Sk~rFlDTM 273 (1075)
T KOG3657|consen 249 VSFDRARIREEYNINGSKIRFLDTM 273 (1075)
T ss_pred ccchHHHHHHHHhccccceeeeech
Confidence 346899999999999985 44543
No 9
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=15.86 E-value=29 Score=28.38 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=13.5
Q ss_pred chhHHHHHH--HHhCCCCCCccc
Q 030039 97 TCFYRSKMR--KQYTLKKKPCCD 117 (184)
Q Consensus 97 ~~~~R~~IR--~kygI~Gs~~~D 117 (184)
.+..|++.| +||||-++..++
T Consensus 116 ~~R~r~~~rktRkYgvl~~~~~~ 138 (163)
T PF06679_consen 116 TFRLRRRNRKTRKYGVLTTRAEN 138 (163)
T ss_pred HHhhccccccceeecccCCCccc
Confidence 334555445 699999876544
No 10
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=13.75 E-value=51 Score=27.27 Aligned_cols=24 Identities=42% Similarity=0.970 Sum_probs=15.2
Q ss_pred hhhhcChhHHhhHHHHHHHhcCCCC
Q 030039 119 LVHCCCLHCALCQEHRELRNRGFDM 143 (184)
Q Consensus 119 ~~~~cC~~CaL~Q~~RElk~r~~~p 143 (184)
++|.||.||++.=. ..|+..+.++
T Consensus 2 LLH~CCaPCs~~~~-~~L~~~g~~v 25 (176)
T PF02677_consen 2 LLHICCAPCSTYPL-ERLREEGFDV 25 (176)
T ss_pred eeeecCccccHHHH-HHHHHCCCCe
Confidence 67899999997533 3344444443
Done!