Query 030039
Match_columns 184
No_of_seqs 103 out of 733
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 11:58:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030039.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030039hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kil_E Complexin I snare-compl 80.1 0.78 2.7E-05 29.3 1.6 12 99-110 38-49 (49)
2 3rk3_E Complexin-1; snare prot 79.0 0.92 3.1E-05 30.3 1.8 14 99-112 41-54 (63)
3 1l4a_E Synaphin A; snare, snar 76.3 1.2 4E-05 31.1 1.8 14 99-112 45-58 (79)
4 3k6g_A Telomeric repeat-bindin 8.3 1.5E+02 0.0051 21.7 1.5 13 99-111 75-87 (111)
5 2ywm_A Glutaredoxin-like prote 8.3 1.8E+02 0.0061 21.9 2.1 38 98-135 5-45 (229)
6 1wxa_A Afadin, AF-6 protein; R 7.5 1.5E+02 0.005 21.5 1.2 22 100-121 39-60 (116)
7 1yfb_A Transition state regula 7.3 2.2E+02 0.0075 18.1 1.9 14 100-113 26-39 (59)
8 4egd_A Uncharacterized protein 7.0 1.9E+02 0.0065 24.1 1.7 15 100-114 193-207 (260)
9 2l66_A SSO7C4, transcriptional 5.8 2.9E+02 0.01 16.7 1.8 13 101-113 17-29 (53)
10 3j21_U 50S ribosomal protein L 5.1 2.7E+02 0.0092 20.5 1.5 13 100-112 31-43 (121)
No 1
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=80.14 E-value=0.78 Score=29.34 Aligned_cols=12 Identities=25% Similarity=0.623 Sum_probs=10.7
Q ss_pred hHHHHHHHHhCC
Q 030039 99 FYRSKMRKQYTL 110 (184)
Q Consensus 99 ~~R~~IR~kygI 110 (184)
..|+.||.||||
T Consensus 38 ~mRq~IRdKY~i 49 (49)
T 1kil_E 38 VMRQGIRDKYGI 49 (49)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHhcCC
Confidence 379999999998
No 2
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=79.01 E-value=0.92 Score=30.35 Aligned_cols=14 Identities=36% Similarity=0.608 Sum_probs=11.8
Q ss_pred hHHHHHHHHhCCCC
Q 030039 99 FYRSKMRKQYTLKK 112 (184)
Q Consensus 99 ~~R~~IR~kygI~G 112 (184)
.+|+.||.||||+.
T Consensus 41 ~mRQ~IRdKY~ikK 54 (63)
T 3rk3_E 41 AVRQGIRDKYGIKK 54 (63)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHhccch
Confidence 37999999999984
No 3
>1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=76.26 E-value=1.2 Score=31.07 Aligned_cols=14 Identities=43% Similarity=0.648 Sum_probs=11.9
Q ss_pred hHHHHHHHHhCCCC
Q 030039 99 FYRSKMRKQYTLKK 112 (184)
Q Consensus 99 ~~R~~IR~kygI~G 112 (184)
.+|+.||.||||+-
T Consensus 45 ~mRq~IRdKY~ikK 58 (79)
T 1l4a_E 45 EMRQTIRDKYGLKK 58 (79)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHhcccc
Confidence 37999999999985
No 4
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=8.32 E-value=1.5e+02 Score=21.75 Aligned_cols=13 Identities=15% Similarity=0.204 Sum_probs=11.3
Q ss_pred hHHHHHHHHhCCC
Q 030039 99 FYRSKMRKQYTLK 111 (184)
Q Consensus 99 ~~R~~IR~kygI~ 111 (184)
.+|.++|+|||-+
T Consensus 75 ~~R~qL~~KfG~e 87 (111)
T 3k6g_A 75 DTREALVKKFGAQ 87 (111)
T ss_dssp HHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhhH
Confidence 4899999999965
No 5
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=8.26 E-value=1.8e+02 Score=21.90 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=25.1
Q ss_pred hhHHHHHHHHh--CCCCCCccchhhhh-cChhHHhhHHHHH
Q 030039 98 CFYRSKMRKQY--TLKKKPCCDCLVHC-CCLHCALCQEHRE 135 (184)
Q Consensus 98 ~~~R~~IR~ky--gI~Gs~~~Dc~~~~-cC~~CaL~Q~~RE 135 (184)
-..|.++++-+ .+++...-++.... ||++|.-|+...+
T Consensus 5 ~~~~~~l~~~~~~~~~~~v~v~~~~~~~~~~~C~~c~~~~~ 45 (229)
T 2ywm_A 5 LDVRMQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLK 45 (229)
T ss_dssp HHHHHHHHHHHHHHCCSCEEEEEECCCTTCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEccCCCCcccHHHHHHHH
Confidence 35678888877 56665554444444 7899987776543
No 6
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.15.1.5
Probab=7.51 E-value=1.5e+02 Score=21.45 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=17.0
Q ss_pred HHHHHHHHhCCCCCCccchhhh
Q 030039 100 YRSKMRKQYTLKKKPCCDCLVH 121 (184)
Q Consensus 100 ~R~~IR~kygI~Gs~~~Dc~~~ 121 (184)
+=.+.-+|||++....+|+++.
T Consensus 39 vV~eaLekygL~~~~~~~Y~Lv 60 (116)
T 1wxa_A 39 AVAESLEKYGLEKENPKDYCIA 60 (116)
T ss_dssp HHHHHHHHHTCSSSCTTTEEEE
T ss_pred HHHHHHHHhCCCCCCchheEEE
Confidence 4456678999999888887763
No 7
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=7.26 E-value=2.2e+02 Score=18.11 Aligned_cols=14 Identities=14% Similarity=0.328 Sum_probs=11.2
Q ss_pred HHHHHHHHhCCCCC
Q 030039 100 YRSKMRKQYTLKKK 113 (184)
Q Consensus 100 ~R~~IR~kygI~Gs 113 (184)
+=.++|+++||+..
T Consensus 26 IPkeiR~~Lgi~~G 39 (59)
T 1yfb_A 26 IPIELRRTLGIAEK 39 (59)
T ss_dssp CCHHHHHHTTCCTT
T ss_pred eCHHHHHHcCCCCC
Confidence 44789999999954
No 8
>4egd_A Uncharacterized protein saouhsc_02783; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Staphylococcus aureus subsp} PDB: 4eg9_A
Probab=6.96 E-value=1.9e+02 Score=24.12 Aligned_cols=15 Identities=27% Similarity=0.525 Sum_probs=12.2
Q ss_pred HHHHHHHHhCCCCCC
Q 030039 100 YRSKMRKQYTLKKKP 114 (184)
Q Consensus 100 ~R~~IR~kygI~Gs~ 114 (184)
.-.++|+||+|+-+-
T Consensus 193 NVKQLRkrY~IpT~k 207 (260)
T 4egd_A 193 NVQQLRKRYDIPTKQ 207 (260)
T ss_dssp HHHHHHHHSCCCCCC
T ss_pred hHHHHHHhcCCCCCC
Confidence 567899999999653
No 9
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=5.82 E-value=2.9e+02 Score=16.69 Aligned_cols=13 Identities=23% Similarity=0.613 Sum_probs=10.0
Q ss_pred HHHHHHHhCCCCC
Q 030039 101 RSKMRKQYTLKKK 113 (184)
Q Consensus 101 R~~IR~kygI~Gs 113 (184)
=.++|+++||+..
T Consensus 17 Pk~ir~~lgi~~G 29 (53)
T 2l66_A 17 PAKVRQKFQIKEG 29 (53)
T ss_dssp CHHHHHHSCCCTT
T ss_pred CHHHHHHcCcCCC
Confidence 3678999999853
No 10
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=5.07 E-value=2.7e+02 Score=20.52 Aligned_cols=13 Identities=15% Similarity=0.621 Sum_probs=10.2
Q ss_pred HHHHHHHHhCCCC
Q 030039 100 YRSKMRKQYTLKK 112 (184)
Q Consensus 100 ~R~~IR~kygI~G 112 (184)
+=.++|++||++.
T Consensus 31 LSkeLR~ky~~r~ 43 (121)
T 3j21_U 31 LSRELREKYKVRN 43 (121)
T ss_dssp BCHHHHHHTCCSE
T ss_pred CCHHHHHHhCCcc
Confidence 4478999999873
Done!