Query 030039
Match_columns 184
No_of_seqs 103 out of 733
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 11:59:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030039.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030039hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mkya3 d.52.5.1 (A:359-439) P 13.0 55 0.004 20.7 2.3 20 96-115 53-73 (81)
2 d1e0ea_ a.4.10.1 (A:) N-termin 8.4 34 0.0025 19.8 -0.1 19 102-120 20-38 (46)
3 d2p7vb1 a.4.13.2 (B:546-613) S 6.9 1.1E+02 0.0077 18.6 1.8 38 97-134 7-47 (68)
4 d1nexa1 a.157.1.1 (A:116-185) 6.9 1E+02 0.0075 18.8 1.7 16 98-113 45-60 (70)
5 d1tjla2 g.39.1.13 (A:111-151) 6.1 1E+02 0.0074 16.9 1.2 15 125-139 23-37 (41)
6 d1i5ga_ c.47.1.10 (A:) Trypare 5.9 1.2E+02 0.0087 20.1 1.8 7 121-127 37-43 (144)
7 d1fo5a_ c.47.1.1 (A:) MJ0307, 5.7 1E+02 0.0075 18.1 1.2 19 121-139 11-30 (85)
8 d1ku3a_ a.4.13.2 (A:) Sigma70 5.5 1.5E+02 0.011 17.3 1.9 17 97-113 10-26 (61)
9 d2odgc1 a.140.1.1 (C:2-47) Inn 5.4 1.6E+02 0.012 16.8 1.9 16 103-118 13-28 (46)
10 d1ttya_ a.4.13.2 (A:) Sigma70 5.3 1.4E+02 0.01 18.8 1.8 38 97-134 20-60 (87)
No 1
>d1mkya3 d.52.5.1 (A:359-439) Probable GTPase Der, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=13.01 E-value=55 Score=20.70 Aligned_cols=20 Identities=20% Similarity=0.449 Sum_probs=15.7
Q ss_pred cchhHHHHHHHH-hCCCCCCc
Q 030039 96 YTCFYRSKMRKQ-YTLKKKPC 115 (184)
Q Consensus 96 ~~~~~R~~IR~k-ygI~Gs~~ 115 (184)
|.=.+...+|++ ||++|..+
T Consensus 53 Y~ryL~n~lR~~~f~~~G~Pi 73 (81)
T d1mkya3 53 QKIFLRKLIRDYVFPFEGSPI 73 (81)
T ss_dssp HHHHHHHHHHHHTCCCTTCCC
T ss_pred HHHHHHHHHHHHhCCCCccCE
Confidence 344578999998 99999864
No 2
>d1e0ea_ a.4.10.1 (A:) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=8.38 E-value=34 Score=19.79 Aligned_cols=19 Identities=0% Similarity=0.121 Sum_probs=13.9
Q ss_pred HHHHHHhCCCCCCccchhh
Q 030039 102 SKMRKQYTLKKKPCCDCLV 120 (184)
Q Consensus 102 ~~IR~kygI~Gs~~~Dc~~ 120 (184)
..+|.+|||+.....++..
T Consensus 20 ~~L~~~F~lp~~vAr~IV~ 38 (46)
T d1e0ea_ 20 KELSHKFGIPNLVARQIVN 38 (46)
T ss_dssp HHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 5688899998766666555
No 3
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]}
Probab=6.93 E-value=1.1e+02 Score=18.61 Aligned_cols=38 Identities=8% Similarity=-0.044 Sum_probs=21.8
Q ss_pred chhHHHHHHHHhCCCCC---CccchhhhhcChhHHhhHHHH
Q 030039 97 TCFYRSKMRKQYTLKKK---PCCDCLVHCCCLHCALCQEHR 134 (184)
Q Consensus 97 ~~~~R~~IR~kygI~Gs---~~~Dc~~~~cC~~CaL~Q~~R 134 (184)
.-..|.-|+.+|||.+. ...++...+--.-=-+.|..+
T Consensus 7 ~~rE~~Ii~~rfGl~~~~~~tl~eI~~~lgiSrerVrqie~ 47 (68)
T d2p7vb1 7 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 47 (68)
T ss_dssp CHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHHCCCHHHHHHHHH
Confidence 34578889999999864 244444444333333334333
No 4
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.89 E-value=1e+02 Score=18.78 Aligned_cols=16 Identities=6% Similarity=0.237 Sum_probs=13.1
Q ss_pred hhHHHHHHHHhCCCCC
Q 030039 98 CFYRSKMRKQYTLKKK 113 (184)
Q Consensus 98 ~~~R~~IR~kygI~Gs 113 (184)
+..-.+||+.+||+.+
T Consensus 45 gkt~eeiR~~f~I~~D 60 (70)
T d1nexa1 45 GRSPEEIRRTFNIVND 60 (70)
T ss_dssp TCCHHHHHHHHTCCCC
T ss_pred cCCHHHHHHHhCCCCC
Confidence 3567899999999964
No 5
>d1tjla2 g.39.1.13 (A:111-151) DnaK suppressor protein DksA, zinc finger domain {Escherichia coli [TaxId: 562]}
Probab=6.08 E-value=1e+02 Score=16.88 Aligned_cols=15 Identities=27% Similarity=0.576 Sum_probs=10.2
Q ss_pred hhHHhhHHHHHHHhc
Q 030039 125 LHCALCQEHRELRNR 139 (184)
Q Consensus 125 ~~CaL~Q~~RElk~r 139 (184)
.-|+-||+.+|-+.+
T Consensus 23 ~~Cv~Cq~~~E~~~r 37 (41)
T d1tjla2 23 DLCIDCKTLAEIREK 37 (41)
T ss_dssp CSCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH
Confidence 456777877776654
No 6
>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}
Probab=5.93 E-value=1.2e+02 Score=20.06 Aligned_cols=7 Identities=14% Similarity=0.311 Sum_probs=5.0
Q ss_pred hhcChhH
Q 030039 121 HCCCLHC 127 (184)
Q Consensus 121 ~~cC~~C 127 (184)
+-||++|
T Consensus 37 AtWC~pC 43 (144)
T d1i5ga_ 37 ASWCPPS 43 (144)
T ss_dssp CTTCHHH
T ss_pred ecCCchH
Confidence 3478888
No 7
>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=5.65 E-value=1e+02 Score=18.09 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=11.4
Q ss_pred hhcChhH-HhhHHHHHHHhc
Q 030039 121 HCCCLHC-ALCQEHRELRNR 139 (184)
Q Consensus 121 ~~cC~~C-aL~Q~~RElk~r 139 (184)
+-||++| ++.+...++...
T Consensus 11 a~wC~~C~~~~p~~~~~~~~ 30 (85)
T d1fo5a_ 11 SPMCPHCPAAKRVVEEVANE 30 (85)
T ss_dssp CCCSSCCCTHHHHHHHHHHH
T ss_pred CCCCcChHhhhhhccccccc
Confidence 5588988 444455555443
No 8
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
Probab=5.48 E-value=1.5e+02 Score=17.31 Aligned_cols=17 Identities=6% Similarity=-0.142 Sum_probs=13.7
Q ss_pred chhHHHHHHHHhCCCCC
Q 030039 97 TCFYRSKMRKQYTLKKK 113 (184)
Q Consensus 97 ~~~~R~~IR~kygI~Gs 113 (184)
.-..|.-|+.+|||.+.
T Consensus 10 ~~rer~Ii~~ryGl~~~ 26 (61)
T d1ku3a_ 10 SEREAMVLKMRKGLIDG 26 (61)
T ss_dssp CHHHHHHHHHHHTTTTS
T ss_pred CHHHHHHHHHHhCCCCC
Confidence 44688999999999764
No 9
>d2odgc1 a.140.1.1 (C:2-47) Inner nuclear membrane protein emerin {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.39 E-value=1.6e+02 Score=16.77 Aligned_cols=16 Identities=13% Similarity=0.474 Sum_probs=11.6
Q ss_pred HHHHHhCCCCCCccch
Q 030039 103 KMRKQYTLKKKPCCDC 118 (184)
Q Consensus 103 ~IR~kygI~Gs~~~Dc 118 (184)
++-++|||+-..+-|-
T Consensus 13 ~lL~~y~I~HGPvVds 28 (46)
T d2odgc1 13 TLLRRYNIPHGPVVGS 28 (46)
T ss_dssp HHHHHTTCCCCCCCHH
T ss_pred HHHHHhCCCCCCcccc
Confidence 4567899998776553
No 10
>d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima [TaxId: 2336]}
Probab=5.30 E-value=1.4e+02 Score=18.85 Aligned_cols=38 Identities=11% Similarity=-0.120 Sum_probs=22.5
Q ss_pred chhHHHHHHHHhCCCCCC---ccchhhhhcChhHHhhHHHH
Q 030039 97 TCFYRSKMRKQYTLKKKP---CCDCLVHCCCLHCALCQEHR 134 (184)
Q Consensus 97 ~~~~R~~IR~kygI~Gs~---~~Dc~~~~cC~~CaL~Q~~R 134 (184)
.-..|.-|+.+|||.+.. +.++...+=-.-=-+-|..+
T Consensus 20 ~~rE~~Ii~~rfGl~~~~~~tl~eI~~~lgiSrERVRQie~ 60 (87)
T d1ttya_ 20 SPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEV 60 (87)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHhCCCHHHHHHHHH
Confidence 456888999999997653 44444444333333444433
Done!