BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030040
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JYH|A Chain A, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|B Chain B, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|C Chain C, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|D Chain D, Human Dipeptidyl Peptidase Dpp7
pdb|3N0T|A Chain A, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|B Chain B, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|C Chain C, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|D Chain D, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
Length = 469
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 22/87 (25%)
Query: 87 RLWWFQVCTEVAF----------FQVAPANDSVRSSKVDTRYHLDLCKNVFGEGIYPDVD 136
R W +Q CTE+ F P D +R RY LD G++P D
Sbjct: 322 RAWDYQACTEINLTFASNNVTDMFPDLPFTDELRQ-----RYCLDTW------GVWPRPD 370
Query: 137 -STNIYYGGTKIAGSKIVFTNGSQDPW 162
++GG A S I+F+NG+ DPW
Sbjct: 371 WLLTSFWGGDLRAASNIIFSNGNLDPW 397
>pdb|4EBB|A Chain A, Structure Of Dpp2
pdb|4EBB|B Chain B, Structure Of Dpp2
Length = 472
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 22/87 (25%)
Query: 87 RLWWFQVCTEVAF----------FQVAPANDSVRSSKVDTRYHLDLCKNVFGEGIYPDVD 136
R W +Q CTE+ F P D +R RY LD G++P D
Sbjct: 319 RAWDYQACTEINLTFASNNVTDXFPDLPFTDELRQ-----RYCLDTW------GVWPRPD 367
Query: 137 -STNIYYGGTKIAGSKIVFTNGSQDPW 162
++GG A S I+F+NG+ DPW
Sbjct: 368 WLLTSFWGGDLRAASNIIFSNGNLDPW 394
>pdb|3N2Z|B Chain B, The Structure Of Human Prolylcarboxypeptidase At 2.80
Angstroms Resolution
Length = 446
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 89 WWFQVCTEVAF-FQVAPANDSVRSSKVDTRYHLDLCKNVFGEGIYPDVDSTNIYYGGTKI 147
W +Q CTEV F +D + + D C +G + P YGG I
Sbjct: 314 WSYQACTEVVMPFCTNGVDDMFEPHSWNLKELSDDCFQQWG--VRPRPSWITTMYGGKNI 371
Query: 148 AG-SKIVFTNGSQDPW 162
+ + IVF+NG DPW
Sbjct: 372 SSHTNIVFSNGELDPW 387
>pdb|1DKI|A Chain A, Crystal Structure Of The Zymogen Form Of Streptococcal
Pyrogenic Exotoxin B Active Site (C47s) Mutant
pdb|1DKI|B Chain B, Crystal Structure Of The Zymogen Form Of Streptococcal
Pyrogenic Exotoxin B Active Site (C47s) Mutant
pdb|1DKI|C Chain C, Crystal Structure Of The Zymogen Form Of Streptococcal
Pyrogenic Exotoxin B Active Site (C47s) Mutant
pdb|1DKI|D Chain D, Crystal Structure Of The Zymogen Form Of Streptococcal
Pyrogenic Exotoxin B Active Site (C47s) Mutant
Length = 371
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 4 AAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGE 45
A EI+ + L D+ + GNP L TP++E GE
Sbjct: 112 AGTAEIKQPVVKSLLDSKGIHYNQGNPYNLLTPVIEKVKPGE 153
>pdb|1PVJ|A Chain A, Crystal Structure Of The Streptococcal Pyrogenic Exotoxin
B (Speb)- Inhibitor Complex
pdb|1PVJ|B Chain B, Crystal Structure Of The Streptococcal Pyrogenic Exotoxin
B (Speb)- Inhibitor Complex
pdb|1PVJ|C Chain C, Crystal Structure Of The Streptococcal Pyrogenic Exotoxin
B (Speb)- Inhibitor Complex
pdb|1PVJ|D Chain D, Crystal Structure Of The Streptococcal Pyrogenic Exotoxin
B (Speb)- Inhibitor Complex
Length = 368
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 4 AAELEIEGDFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGE 45
A EI+ + L D+ + GNP L TP++E GE
Sbjct: 109 AGTAEIKQPVVKSLLDSKGIHYNQGNPYNLLTPVIEKVKPGE 150
>pdb|4A5W|A Chain A, Crystal Structure Of C5b6
Length = 1580
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 16 FLADAAVTAFQYGNPDKLCTPLVEAKN 42
FL+ A T ++Y PDK CT N
Sbjct: 1391 FLSPATFTVYEYHRPDKQCTMFYSTSN 1417
>pdb|3CU7|A Chain A, Human Complement Component 5
pdb|3CU7|B Chain B, Human Complement Component 5
pdb|3KLS|A Chain A, Structure Of Complement C5 In Complex With Ssl7
pdb|3KLS|B Chain B, Structure Of Complement C5 In Complex With Ssl7
pdb|3KM9|A Chain A, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|3KM9|B Chain B, Structure Of Complement C5 In Complex With The C-Terminal
Beta-Grasp Domain Of Ssl7
pdb|4E0S|A Chain A, Crystal Structure Of C5b-6
Length = 1676
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 16 FLADAAVTAFQYGNPDKLCTPLVEAKN 42
FL+ A T ++Y PDK CT N
Sbjct: 1487 FLSPATFTVYEYHRPDKQCTMFYSTSN 1513
>pdb|3PRX|A Chain A, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PRX|C Chain C, Structure Of Complement C5 In Complex With Cvf And Ssl7
pdb|3PVM|A Chain A, Structure Of Complement C5 In Complex With Cvf
pdb|3PVM|C Chain C, Structure Of Complement C5 In Complex With Cvf
Length = 1676
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 16 FLADAAVTAFQYGNPDKLCTPLVEAKN 42
FL+ A T ++Y PDK CT N
Sbjct: 1487 FLSPATFTVYEYHRPDKQCTMFYSTSN 1513
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,602,422
Number of Sequences: 62578
Number of extensions: 223933
Number of successful extensions: 480
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 469
Number of HSP's gapped (non-prelim): 13
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)