Query 030040
Match_columns 184
No_of_seqs 118 out of 801
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 07:35:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030040.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030040hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2182 Hydrolytic enzymes of 100.0 2.6E-39 5.6E-44 275.7 10.6 168 13-182 277-467 (514)
2 PF05577 Peptidase_S28: Serine 100.0 4.8E-36 1E-40 259.5 4.4 169 13-183 217-411 (434)
3 KOG2183 Prolylcarboxypeptidase 100.0 8.1E-32 1.8E-36 225.3 11.4 175 2-183 257-450 (492)
4 PF05576 Peptidase_S37: PS-10 97.8 0.00014 2.9E-09 62.5 8.4 144 12-183 233-387 (448)
5 COG3977 Alanine-alpha-ketoisov 63.7 6.4 0.00014 33.2 2.6 45 135-180 84-132 (417)
6 PTZ00308 ethanolamine-phosphat 25.0 45 0.00097 28.6 1.6 19 149-167 191-209 (353)
7 PRK14760 hypothetical protein; 22.9 32 0.00069 17.8 0.2 7 95-101 19-25 (26)
8 PTZ00235 DNA polymerase epsilo 18.6 1E+02 0.0023 25.7 2.5 20 148-167 108-127 (291)
9 COG5171 YRB1 Ran GTPase-activa 15.5 66 0.0014 24.8 0.6 13 84-97 157-169 (211)
10 PF14433 SUKH-3: SUKH-3 immuni 14.3 1.1E+02 0.0023 22.2 1.4 55 111-166 16-75 (142)
No 1
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=100.00 E-value=2.6e-39 Score=275.68 Aligned_cols=168 Identities=35% Similarity=0.559 Sum_probs=136.2
Q ss_pred HHHHHHHHhHhhhccCC-----------hhhcCHhhHhcCCCChHHHHHHHHHHHHHhcCcC-CCcccccc--ccccccC
Q 030040 13 FLYFLADAAVTAFQYGN-----------PDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSF-GASVQTYN--QKRLKNT 78 (184)
Q Consensus 13 f~~~i~~~~~~~~Qy~~-----------~~~~C~~l~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~ 78 (184)
|+..|.+.|+++|||.+ ++++|+.|++. ...+.+.++.++++.+.+... ++....|+ +..++++
T Consensus 277 ff~nv~~~FqgvvQY~gd~~~~~~~~~~i~~~C~~l~n~--t~~d~v~~~~~~~~~~~~~~~~~c~~~~Y~~~i~~~~n~ 354 (514)
T KOG2182|consen 277 FFSNVYSNFQGVVQYSGDNSNATASGLGIPAMCDILNNK--TPGDDVVAVNKYMNWFNNGFGYGCLDNTYNGMISYLKNS 354 (514)
T ss_pred HHHHHHHhhhhheeecCCCCcccccccChhHHHHHhhcC--CCCchHHHHHHHHHHHHhccCCCcCCccHHHHHHHhhcc
Confidence 88999999999999964 46799999983 334568899888887664431 12223343 2345543
Q ss_pred CCC--CCCCCcceeccccccccccccCCCCCCCCcccCChhhHHHHhHHhcC-----CCCCCChHHHHHhcCC-CCCCCC
Q 030040 79 AVT--DQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFG-----EGIYPDVDSTNIYYGG-TKIAGS 150 (184)
Q Consensus 79 ~~~--~~~~~r~W~~QtCtE~g~fqt~~~~~~~~~~~~~~~~~~~~C~~~Fg-----~~~~~~v~~~n~~yGG-~~~~~s 150 (184)
... ...++|+|+||||||||||||+++++.+|++.++++||+++|+++|| ..+.+.|+.||.+||| .+++++
T Consensus 355 ~~~~~~~~a~r~W~wQtCtEfG~yQttds~~~iFgs~vp~~~fid~C~dlFG~~y~~~~i~~~V~~TN~~YGG~~~~~at 434 (514)
T KOG2182|consen 355 TEPGEDAAADRLWTWQTCTEFGYYQTTDSGNSIFGSTVPLDYFIDLCMDLFGAEYTAKGIDPNVDQTNYKYGGRDNYNAT 434 (514)
T ss_pred cCcCcccccchhhhhhhcccceeeEecCCCCccccCCCChHHHHHHHHHHhCchhhhhHHHHHHHHhhhhcCcccccCcc
Confidence 332 23578999999999999999999988899999999999999999999 4578889999999999 689999
Q ss_pred eEEEECCCCCCcccCccCCC-CCCCceEEEecC
Q 030040 151 KIVFTNGSQDPWRHASKQTS-SPDSKYFMIIFR 182 (184)
Q Consensus 151 niiftnG~~DPW~~~g~~~~-s~~~~~~~I~~~ 182 (184)
||+|+||++||||+||...+ ..++++++|.|.
T Consensus 435 nVvf~NG~~DPWh~LG~~~st~~~~~~~li~gt 467 (514)
T KOG2182|consen 435 NVVFPNGSLDPWHALGLQNSTDSSVVSILINGT 467 (514)
T ss_pred eEEecCCCCCchhhhccccCCCCCceEEEecCC
Confidence 99999999999999999876 578889999774
No 2
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=100.00 E-value=4.8e-36 Score=259.53 Aligned_cols=169 Identities=33% Similarity=0.520 Sum_probs=98.0
Q ss_pred HHHHHHHHhHhhhccCC------------hhhcCHhhHhcCCCChHHHHHHHHHHHHHhcCcCC---Cccccccc----c
Q 030040 13 FLYFLADAAVTAFQYGN------------PDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFG---ASVQTYNQ----K 73 (184)
Q Consensus 13 f~~~i~~~~~~~~Qy~~------------~~~~C~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~----~ 73 (184)
|+..++..++.++||++ +..+|+.|++.. ..+.+.++..+.+.+...... ..+..+.. .
T Consensus 217 ~~~~~~~~~~~~~qy~~~~~~~~~~~~~~i~~~C~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (434)
T PF05577_consen 217 FFSSIADAFQGMVQYPYPGNFNSPLPAWPIRQLCDSLTNAS--WPDEVLRLAALAQWYNNFNTTCYSNSCADFDYNCFDS 294 (434)
T ss_dssp HHHHHHHHHHHHT--SS-EESSSEE-SSHHHHHHHHCHTSS--SHHHHHHHHHHHHHHCCCH-SCCHHCCC--SS-BSST
T ss_pred HHHHHHHHHHHHHhcCCCcccccCCCCcchHHHhhhhcccc--cCchhHHHHHHHHHHHHhcCccccccccccccccccC
Confidence 55567788888999953 478999998753 223334444443332111100 01111110 0
Q ss_pred ccccCCCCCCCCCcceeccccccccccccCCCCCCCCcccCChhhHHHHhHHhcCCC-----CCCChHHHHHhcCC-CCC
Q 030040 74 RLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNVFGEG-----IYPDVDSTNIYYGG-TKI 147 (184)
Q Consensus 74 ~~~~~~~~~~~~~r~W~~QtCtE~g~fqt~~~~~~~~~~~~~~~~~~~~C~~~Fg~~-----~~~~v~~~n~~yGG-~~~ 147 (184)
.....++++..++|+|.||+|||||||||+++..++|++.+++++++++|+++||.. +.++++++|.+||| +++
T Consensus 295 ~~~~~~~~~~~~~R~W~wQtCtE~G~fqt~~~~~~l~~~~~~l~~~~~~C~~~Fg~~~~~~~i~~~~~~tN~~YGG~~~~ 374 (434)
T PF05577_consen 295 TYDDSSFDDNADDRQWLWQTCTEFGYFQTADGPNSLFSRLVNLDYYQDQCQDVFGPGPNPESIPPNVDWTNNYYGGWWNP 374 (434)
T ss_dssp T---SS----HHHHHHHHHHCCT-B----B-SSSSSS-B---HHHHHHHHHHHHS----T------TCHHHHHHTTT--T
T ss_pred CCCcccccccccchhhHHHhhhhccceeccCCCCCcccCCCCHHHHHHHHHHHhCCCccccccccchhHHhheeCccccC
Confidence 111111112235799999999999999999888889999999999999999999853 45589999999999 899
Q ss_pred CCCeEEEECCCCCCcccCccCCC-CCCCceEEEecCC
Q 030040 148 AGSKIVFTNGSQDPWRHASKQTS-SPDSKYFMIIFRT 183 (184)
Q Consensus 148 ~~sniiftnG~~DPW~~~g~~~~-s~~~~~~~I~~~~ 183 (184)
+++||+||||++||||.+|+.++ +.++++++||++.
T Consensus 375 ~~tnviFtNG~~DPW~~lgv~~~~~~~~~~~~I~g~~ 411 (434)
T PF05577_consen 375 NATNVIFTNGELDPWRALGVTSDSSDSVPAIVIPGGA 411 (434)
T ss_dssp T--SEEEEEETT-CCGGGS--S-SSSSEEEEEETT--
T ss_pred CCCeEEeeCCCCCCcccccCCCCCCCCcccEEECCCe
Confidence 99999999999999999999876 7889999999864
No 3
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.97 E-value=8.1e-32 Score=225.30 Aligned_cols=175 Identities=22% Similarity=0.325 Sum_probs=143.3
Q ss_pred CCC-CcCC-ChHHHHHHHHHHhHhhh--ccCC------------hhhcCHhhHhcCCCChHHHHHHHHHHHHHhcCcCCC
Q 030040 2 FDA-AELE-IEGDFLYFLADAAVTAF--QYGN------------PDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGA 65 (184)
Q Consensus 2 Fg~-~~l~-~~~df~~~i~~~~~~~~--Qy~~------------~~~~C~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 65 (184)
|++ .+|. +..++..+|.+++..++ +|.+ ++++|..|.....+..++++++.+.++.+||++ +
T Consensus 257 f~lc~~ln~d~~~l~d~l~ea~~ylAMVdYPy~t~Fl~pLPa~PV~~~C~~i~~~~~~~~~ll~~i~a~~~~yyNyt--g 334 (492)
T KOG2183|consen 257 FKLCKPLNDDIGDLKDYLREAYEYLAMVDYPYPTSFLAPLPAWPVKVVCKYINAPGPNDSDLLDRIFAAVNLYYNYT--G 334 (492)
T ss_pred hhhcccccccHHHHHHHHHHHHHHHHHhcCCCCccccCcCCCCcHHHHHHHhccCCCChHHHHHHHHHHhhheeccC--C
Confidence 554 6666 45668888987776654 5544 368999998765555789999999999999875 5
Q ss_pred ccccccccccccCCCCCCCCCcceeccccccccccccCCCCC-CCCcccCChhhHHHHhHHhcCCCCCCChHHHHHhcCC
Q 030040 66 SVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPAND-SVRSSKVDTRYHLDLCKNVFGEGIYPDVDSTNIYYGG 144 (184)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~r~W~~QtCtE~g~fqt~~~~~-~~~~~~~~~~~~~~~C~~~Fg~~~~~~v~~~n~~yGG 144 (184)
+..||+.. +.+..+..+.|.|.||+|||+.+..+++..+ ++....++.+.+++.|.+.|| +.|+++|++.+|||
T Consensus 335 ~~~C~d~s---d~t~~~~~d~~gW~~QaCtEmVMp~~~ng~~~mf~~~~fn~~~y~e~C~~~~~--v~prP~wi~t~fgg 409 (492)
T KOG2183|consen 335 SEKCYDIS---DPTYGSGLDDLGWPWQACTEMVMPMCSNGVDDMFPDCPFNSESYQEGCMQTFG--VTPRPKWITTEFGG 409 (492)
T ss_pred Ccchhccc---cccCCCCCCcCCCchhhhhhhhhccccCCCcccCCCCCCCHHHHHHHHHHhcC--CCCCCcceehhhcc
Confidence 66788864 2223334567999999999999999988764 556678999999999999999 89999999999999
Q ss_pred CCCC-CCeEEEECCCCCCcccCccCCC-CCCCceEEEecCC
Q 030040 145 TKIA-GSKIVFTNGSQDPWRHASKQTS-SPDSKYFMIIFRT 183 (184)
Q Consensus 145 ~~~~-~sniiftnG~~DPW~~~g~~~~-s~~~~~~~I~~~~ 183 (184)
.++. .|||||+||.+|||+.+||++. +.++++++|++|.
T Consensus 410 ~~l~~~SNiIFSNG~LDPWSGGGV~~nis~svvav~~k~GA 450 (492)
T KOG2183|consen 410 ADLSAFSNIIFSNGLLDPWSGGGVLKNISDSVVAVTIKEGA 450 (492)
T ss_pred ccchhhcceeeeCCCcCCccCcCeeccccCcEEEEEecCCc
Confidence 8874 6899999999999999999887 8899999999885
No 4
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=97.77 E-value=0.00014 Score=62.53 Aligned_cols=144 Identities=17% Similarity=0.317 Sum_probs=75.1
Q ss_pred HHHHHHHHHhHhhhccCChhhcCHhhHhcCCCChHHHHHHHHHHHHHhcCcCCCccccccccccccCCCCCCCCCcceec
Q 030040 12 DFLYFLADAAVTAFQYGNPDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSFGASVQTYNQKRLKNTAVTDQSADRLWWF 91 (184)
Q Consensus 12 df~~~i~~~~~~~~Qy~~~~~~C~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~W~~ 91 (184)
-|-..+-+..-..|||+... -|+.|-....+.. -+.+.+++...- .... +++..+ ..-....|
T Consensus 233 a~E~~VLe~~faFWQy~~~~-~C~~IP~~~~~As--ddeL~~~l~~is------g~s~-----ysDq~l---~~y~pyyy 295 (448)
T PF05576_consen 233 AYEYAVLEYPFAFWQYGTPA-DCASIPADAKTAS--DDELFDFLDAIS------GFSF-----YSDQGL---EPYTPYYY 295 (448)
T ss_pred HHHHHHhhhhhHhhccCCcc-chhcCCCCcCCCC--HHHHHHHHHhhc------Cccc-----cccCCc---ccccChHH
Confidence 34444444333688998655 7887743211111 122333332110 1222 222221 12357999
Q ss_pred cccccccccccCCCCCCCCcccCChhhHHHHhHHh---------cCCCCCCChHHHHHhcCCCCCCCCeEEEECCCCCCc
Q 030040 92 QVCTEVAFFQVAPANDSVRSSKVDTRYHLDLCKNV---------FGEGIYPDVDSTNIYYGGTKIAGSKIVFTNGSQDPW 162 (184)
Q Consensus 92 QtCtE~g~fqt~~~~~~~~~~~~~~~~~~~~C~~~---------Fg~~~~~~v~~~n~~yGG~~~~~sniiftnG~~DPW 162 (184)
|.=||+||+...-+ .+...++...+. =... |.+...++|+..-.. +++|+||++|+.|||
T Consensus 296 QA~teLG~p~~~~~--hl~~~ll~~g~~---~~r~fvP~~i~m~Fdp~am~dI~~Wvr~------~~~rmlFVYG~nDPW 364 (448)
T PF05576_consen 296 QAGTELGYPGYDTP--HLRKKLLRYGYQ---PPRNFVPRDIPMKFDPTAMRDIDRWVRN------NGPRMLFVYGENDPW 364 (448)
T ss_pred HHHhhcCCCCCCCc--chhccccccCCC---CcccCCCCCCCCCcCHHHHHHHHHHHHh------CCCeEEEEeCCCCCc
Confidence 99999999765322 111111111110 0122 222122234433332 569999999999999
Q ss_pred ccCccCC--CCCCCceEEEecCC
Q 030040 163 RHASKQT--SSPDSKYFMIIFRT 183 (184)
Q Consensus 163 ~~~g~~~--~s~~~~~~~I~~~~ 183 (184)
.+.++.- ...+.-+++.||+|
T Consensus 365 ~A~~f~l~~g~~ds~v~~~Pggn 387 (448)
T PF05576_consen 365 SAEPFRLGKGKRDSYVFTAPGGN 387 (448)
T ss_pred ccCccccCCCCcceEEEEcCCCc
Confidence 9999853 35566777788886
No 5
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=63.68 E-value=6.4 Score=33.23 Aligned_cols=45 Identities=24% Similarity=0.271 Sum_probs=31.4
Q ss_pred hHHHHHhcCCCCCCCCeEEEECCCCCCcccCc----cCCCCCCCceEEEe
Q 030040 135 VDSTNIYYGGTKIAGSKIVFTNGSQDPWRHAS----KQTSSPDSKYFMII 180 (184)
Q Consensus 135 v~~~n~~yGG~~~~~sniiftnG~~DPW~~~g----~~~~s~~~~~~~I~ 180 (184)
+...|.+|| |++...||..|||+.--+-.+- -+.++.....|+.|
T Consensus 84 a~~l~~~yg-wnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illP 132 (417)
T COG3977 84 AKMLRREYG-WNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLP 132 (417)
T ss_pred HHHHHHHhC-CCCccceeeecCCccchHHHHHHHhcCccCCCcceeEeec
Confidence 567788897 9999999999999987765532 12233445555544
No 6
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=24.96 E-value=45 Score=28.57 Aligned_cols=19 Identities=32% Similarity=0.585 Sum_probs=16.2
Q ss_pred CCeEEEECCCCCCcccCcc
Q 030040 149 GSKIVFTNGSQDPWRHASK 167 (184)
Q Consensus 149 ~sniiftnG~~DPW~~~g~ 167 (184)
..+|+|++|.+||.|.+=+
T Consensus 191 ~~kiv~~~G~FDl~H~GHi 209 (353)
T PTZ00308 191 GDRIVYVDGSFDLFHIGHI 209 (353)
T ss_pred CCeEEEECCccCCCCHHHH
Confidence 4689999999999998643
No 7
>PRK14760 hypothetical protein; Provisional
Probab=22.92 E-value=32 Score=17.77 Aligned_cols=7 Identities=14% Similarity=0.572 Sum_probs=4.3
Q ss_pred ccccccc
Q 030040 95 TEVAFFQ 101 (184)
Q Consensus 95 tE~g~fq 101 (184)
||+|||.
T Consensus 19 t~~gww~ 25 (26)
T PRK14760 19 TQFGWWX 25 (26)
T ss_pred ccccccc
Confidence 5666653
No 8
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=18.63 E-value=1e+02 Score=25.70 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=17.1
Q ss_pred CCCeEEEECCCCCCcccCcc
Q 030040 148 AGSKIVFTNGSQDPWRHASK 167 (184)
Q Consensus 148 ~~sniiftnG~~DPW~~~g~ 167 (184)
+.++.||+=|..|||....+
T Consensus 108 ~~s~fVFVPGpnDPw~s~~~ 127 (291)
T PTZ00235 108 EHCYLIFIPGINDPCACKNS 127 (291)
T ss_pred hcCeEEEECCCCCCCcCccc
Confidence 57999999999999976544
No 9
>COG5171 YRB1 Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]
Probab=15.48 E-value=66 Score=24.84 Aligned_cols=13 Identities=31% Similarity=0.649 Sum_probs=9.7
Q ss_pred CCCcceeccccccc
Q 030040 84 SADRLWWFQVCTEV 97 (184)
Q Consensus 84 ~~~r~W~~QtCtE~ 97 (184)
..+|+|.| +||+=
T Consensus 157 gsdrsWvw-~~taD 169 (211)
T COG5171 157 GSDRSWVW-MSTAD 169 (211)
T ss_pred CcccceEE-Eeecc
Confidence 35799999 67763
No 10
>PF14433 SUKH-3: SUKH-3 immunity protein
Probab=14.31 E-value=1.1e+02 Score=22.21 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=37.4
Q ss_pred cccCChhhHHHHhHHhcCCCCCCChHHHHHhcCCCCCC-----CCeEEEECCCCCCcccCc
Q 030040 111 SSKVDTRYHLDLCKNVFGEGIYPDVDSTNIYYGGTKIA-----GSKIVFTNGSQDPWRHAS 166 (184)
Q Consensus 111 ~~~~~~~~~~~~C~~~Fg~~~~~~v~~~n~~yGG~~~~-----~sniiftnG~~DPW~~~g 166 (184)
.|.++.+.+.+..++. |-.+.|.+.+.-.+|||+.+. ...+....=.+||=++++
T Consensus 16 ~R~idi~~~~~~~~~~-g~~~~paa~~fL~efGgL~i~~~~~~~~~~~~~~~~~~P~~~~~ 75 (142)
T PF14433_consen 16 GRKIDISLWEKILEEE-GYPVFPAAVEFLAEFGGLRINPSGPYGRQDAPSDFDFDPLEALG 75 (142)
T ss_pred CcccCHHHHHHHHHhc-CCCCCHHHHHHHHHcCCeEEeccCccccccCCceEEeChhhhcc
Confidence 4556666666666554 655788888889999999764 344555555677777653
Done!