Query 030040
Match_columns 184
No_of_seqs 118 out of 801
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 12:00:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030040.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030040hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n2z_B Lysosomal Pro-X carboxy 100.0 2.4E-37 8.2E-42 267.2 9.3 174 1-183 215-409 (446)
2 4ebb_A Dipeptidyl peptidase 2; 100.0 3.2E-31 1.1E-35 230.6 14.0 175 2-183 217-416 (472)
3 3elb_A Ethanolamine-phosphate 38.4 20 0.0007 29.3 3.0 35 133-167 180-215 (341)
4 4fbo_A Pseudomonas fluorescens 12.6 1.1E+02 0.0037 21.0 1.9 26 156-181 78-107 (133)
5 3obl_A Lectin; novel beta barr 10.5 1.2E+02 0.0042 20.8 1.7 26 156-181 77-106 (132)
6 3bmz_A Putative uncharacterize 9.3 86 0.0029 22.9 0.6 16 149-164 40-55 (199)
7 3hl4_A Choline-phosphate cytid 9.0 1.3E+02 0.0044 23.2 1.5 31 135-166 62-92 (236)
8 1dw0_A Cytochrome C; asparagin 8.1 1.6E+02 0.0054 19.9 1.5 14 116-129 82-95 (112)
9 1mmc_A AC-AMP2, antimicrobial 6.8 1.2E+02 0.0041 15.5 0.3 12 92-103 13-24 (30)
10 3ihj_A Alanine aminotransferas 6.3 2.9E+02 0.0098 23.0 2.6 23 137-159 141-163 (498)
No 1
>3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens}
Probab=100.00 E-value=2.4e-37 Score=267.23 Aligned_cols=174 Identities=21% Similarity=0.310 Sum_probs=136.6
Q ss_pred CCCC-CcCCChHH---HHHHHHHHhHh--hhccCC------------hhhcCHhhHhcCCCChHHHHHHHHHHHHHhcCc
Q 030040 1 MFDA-AELEIEGD---FLYFLADAAVT--AFQYGN------------PDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGS 62 (184)
Q Consensus 1 ~Fg~-~~l~~~~d---f~~~i~~~~~~--~~Qy~~------------~~~~C~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 62 (184)
+|++ ++|++ .| |+++|+++|+. ++||.+ ++.+|+.|++...+..+++++++++++.+++.+
T Consensus 215 ~F~lc~~l~~-~D~~~~~~~l~~~~~~~a~~~y~~~~~~~~~~p~~~v~~~C~~l~~~~~~~~~~~~~~~~~~~~~~n~~ 293 (446)
T 3n2z_B 215 ALHLCSPLTS-QDIQHLKDWISETWVNLAMVDYPYASNFLQPLPAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYYNYS 293 (446)
T ss_dssp HTTBSSCCCT-TSHHHHHHHHHHHHHHHHHTCCSSCEESSSEECSSHHHHHHHHSCCCSCCHHHHHHHHHHHHHHHHHTT
T ss_pred HhCCCCCCCH-HHHHHHHHHHHHHHhhhhhcccccccccccCCCCccHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcC
Confidence 4886 77764 44 66788998875 566653 368999998654344567899999998887643
Q ss_pred CCCccccccccccccCCCCCCCCCcceeccccccccccccCCCCCCCC-cccCChhhHHHHhHHhcCCCCCCChHHHHHh
Q 030040 63 FGASVQTYNQKRLKNTAVTDQSADRLWWFQVCTEVAFFQVAPANDSVR-SSKVDTRYHLDLCKNVFGEGIYPDVDSTNIY 141 (184)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~r~W~~QtCtE~g~fqt~~~~~~~~-~~~~~~~~~~~~C~~~Fg~~~~~~v~~~n~~ 141 (184)
....|++...-. . ...++|+|.||+|||||||||+++...+| +++++++++.++|+++|| +.|+++++|.+
T Consensus 294 --~~~~C~~~~~~~---~-~~~~~r~W~yQ~CtE~g~~~t~~~~~~~f~~~~~~~~~~~~~C~~~Fg--~~p~~~~~~~~ 365 (446)
T 3n2z_B 294 --GQVKCLNISETA---T-SSLGTLGWSYQACTEVVMPFCTNGVDDMFEPHSWNLKELSDDCFQQWG--VRPRPSWITTM 365 (446)
T ss_dssp --SCCSSBCCCC--------CHHHHHHHHHHHHTCCCCCCBCSSSSSSCCBCCCHHHHHHHHHHHHS--CCCCTTHHHHH
T ss_pred --CCCCCcCcCcCc---C-CCccccceeeeecCCccccccCCCCCCcCcCCcCCHHHHHHHHHHHhC--CCCcHHHHHHH
Confidence 234566542211 1 12346999999999999999987655555 668999999999999999 78999999999
Q ss_pred cCCCCC-CCCeEEEECCCCCCcccCccCCC-CCCCceEEEecCC
Q 030040 142 YGGTKI-AGSKIVFTNGSQDPWRHASKQTS-SPDSKYFMIIFRT 183 (184)
Q Consensus 142 yGG~~~-~~sniiftnG~~DPW~~~g~~~~-s~~~~~~~I~~~~ 183 (184)
|||+++ .+|||||+||++||||.+|++++ ++++++++||++.
T Consensus 366 yGG~~~~~~sniif~NG~~DPW~~~gv~~~~s~~~~a~~i~~~a 409 (446)
T 3n2z_B 366 YGGKNISSHTNIVFSNGELDPWSGGGVTKDITDTLVAVTISEGA 409 (446)
T ss_dssp HCTTCCTTCCCEEEEEESSCGGGGGSCCSCSSSSEEEEEETTCC
T ss_pred hccccCCCCCeEEEeCCCcCCccccccccCCCCCceEEEeCCCc
Confidence 999995 68999999999999999999876 7899999999874
No 2
>4ebb_A Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2.00A {Homo sapiens} PDB: 3jyh_A* 3n0t_A*
Probab=99.97 E-value=3.2e-31 Score=230.56 Aligned_cols=175 Identities=22% Similarity=0.312 Sum_probs=123.2
Q ss_pred CC-CCcCCChHH---HHHHHHHHhHhhhccCC--------------hhhcCHhhHhcCCCChHHHHHHHHHHHHHhcCcC
Q 030040 2 FD-AAELEIEGD---FLYFLADAAVTAFQYGN--------------PDKLCTPLVEAKNAGEDLVDAYAKFVKEYYLGSF 63 (184)
Q Consensus 2 Fg-~~~l~~~~d---f~~~i~~~~~~~~Qy~~--------------~~~~C~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 63 (184)
|+ +.++.++.| ++.++.++++.++|+++ ++.+|+.|.+.. +.+.++..+...+++..
T Consensus 217 f~~c~~~~~~~d~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~----~~~~~~~~~~~~~~~~~- 291 (472)
T 4ebb_A 217 FGTCQPLSDEKDLTQLFMFARNAFTVLAMMDYPYPTDFLGPLPANPVKVGCDRLLSEA----QRITGLRALAGLVYNAS- 291 (472)
T ss_dssp HTBSSCCCSHHHHHHHHHHHHHHHHHHHHTCCSSCEESSSEECSSHHHHHHHHHHTCS----SHHHHHHHHHHHHHCTT-
T ss_pred hcCCCCCCChHHHHHHHHHHHHHHHHHhhhccccchhhcccCccchHHHHHHHhcccc----hHHHHHHHHHHHHhhcc-
Confidence 45 467776666 44556667766665543 245677776532 34666666666665543
Q ss_pred CCcccccccccccc--CCCC---CCCCCcceeccccccccccccCCCCC-CCCcccCChhhHHHHhHHhcCCCCCCChHH
Q 030040 64 GASVQTYNQKRLKN--TAVT---DQSADRLWWFQVCTEVAFFQVAPAND-SVRSSKVDTRYHLDLCKNVFGEGIYPDVDS 137 (184)
Q Consensus 64 ~~~~~~~~~~~~~~--~~~~---~~~~~r~W~~QtCtE~g~fqt~~~~~-~~~~~~~~~~~~~~~C~~~Fg~~~~~~v~~ 137 (184)
....|++...... .+.. ...++|+|.||+||||||||++++.. ++.+.+++++++.++|+++||....|++.
T Consensus 292 -~~~~c~~~~~~~~~~~~~~~~~~~~~~r~W~yQ~CtE~g~~~~~~~~~~~f~~~~~~~~~~~~~C~~~fg~~~~~~~~- 369 (472)
T 4ebb_A 292 -GSEHCYDIYRLYHSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDMFPDLPFTDELRQRYCLDTWGVWPRPDWL- 369 (472)
T ss_dssp -SCCSSBCHHHHCCCCSSTTCCCSSHHHHHHHHHHTTTCCCCCCBCSSSSSSCCBCCCHHHHHHHHHHHHSCCCCTTHH-
T ss_pred -CCcchhhhhhhhhhccCCcccCCCCCcccccccccccccccccCCCCCCcCCCCCCcHHHHHHHHHHHhCCCCChhHH-
Confidence 2345665421111 1111 12235999999999999999987754 55677899999999999999954344433
Q ss_pred HHHhcCCCCCCCCeEEEECCCCCCcccCccCCC-CCCCceEEEecCC
Q 030040 138 TNIYYGGTKIAGSKIVFTNGSQDPWRHASKQTS-SPDSKYFMIIFRT 183 (184)
Q Consensus 138 ~n~~yGG~~~~~sniiftnG~~DPW~~~g~~~~-s~~~~~~~I~~~~ 183 (184)
+|.+|||.+++++||||+||++||||.+|++++ ++++++++||++.
T Consensus 370 ~~~~~Gg~~~~~sniiF~nG~~DPW~~~gv~~~~s~~~~~~~I~g~~ 416 (472)
T 4ebb_A 370 LTSFWGGDLRAASNIIFSNGNLDPWAGGGIRRNLSASVIAVTIQGGA 416 (472)
T ss_dssp HHHHCTTCCTTCCSEEEEEETTCTTGGGSCCSCCSSSEEEEEETTCC
T ss_pred HHHhcCCcCCCCCeEEEECCCcCCCcCccCCCCCCCCceEEEeCcCe
Confidence 456788889999999999999999999999876 8899999999874
No 3
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=38.45 E-value=20 Score=29.26 Aligned_cols=35 Identities=11% Similarity=0.282 Sum_probs=24.8
Q ss_pred CChHHHHHhcCCCCC-CCCeEEEECCCCCCcccCcc
Q 030040 133 PDVDSTNIYYGGTKI-AGSKIVFTNGSQDPWRHASK 167 (184)
Q Consensus 133 ~~v~~~n~~yGG~~~-~~sniiftnG~~DPW~~~g~ 167 (184)
+....+-..=+|..+ ...+|++++|.+||.|.+=+
T Consensus 180 ~~~~~~~~f~~g~~~~~~~~iv~~~GsFD~~h~GHl 215 (341)
T 3elb_A 180 QTSQKIIQFASGKEPQPGETVIYVAGAFDLFHIGHV 215 (341)
T ss_dssp CCHHHHHHHCCCCCCCTTCEEEEEEECCTTCCHHHH
T ss_pred CCcceeeeeccCCCCCCCCEEEEEecccCCCCHHHH
Confidence 444555554466655 36789999999999998643
No 4
>4fbo_A Pseudomonas fluorescens agglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.70A {Pseudomonas fluorescens}
Probab=12.65 E-value=1.1e+02 Score=21.02 Aligned_cols=26 Identities=15% Similarity=0.389 Sum_probs=17.1
Q ss_pred CCCCCCcccCcc--C--CCCCCCceEEEec
Q 030040 156 NGSQDPWRHASK--Q--TSSPDSKYFMIIF 181 (184)
Q Consensus 156 nG~~DPW~~~g~--~--~~s~~~~~~~I~~ 181 (184)
-|+--|||++|. . .....++++-|.-
T Consensus 78 GGssAPWhpgG~WviG~R~~Qnvva~~i~S 107 (133)
T 4fbo_A 78 GGNDAPWHPGGKWVIGGRDNQNVIALSVTS 107 (133)
T ss_dssp SCTTSCCEEEEEEECCCCSSCCEEEEEEEC
T ss_pred CCCCCCcCCCCeEEEeecCCCceEEEEeee
Confidence 367889999985 2 2345666666653
No 5
>3obl_A Lectin; novel beta barrel fold, high mannose glycan binding protein; HET: CXS; 1.20A {Planktothrix agardhii} PDB: 3s5v_A 3s5x_A* 3s60_A
Probab=10.48 E-value=1.2e+02 Score=20.76 Aligned_cols=26 Identities=12% Similarity=0.311 Sum_probs=17.3
Q ss_pred CCCCCCcccCcc--C--CCCCCCceEEEec
Q 030040 156 NGSQDPWRHASK--Q--TSSPDSKYFMIIF 181 (184)
Q Consensus 156 nG~~DPW~~~g~--~--~~s~~~~~~~I~~ 181 (184)
-|+--|||++|. . ....++++|-|..
T Consensus 77 GGssAPW~pgG~w~iG~R~~Qnvvai~v~S 106 (132)
T 3obl_A 77 GGDSAPWHSGGNWILGSRENQNVVAINVES 106 (132)
T ss_dssp SSTTSCEEEEEEEECCCCSSCCEEEEEEEC
T ss_pred CCCCCCcCCCCeEEEeccCCCceEEEEeEe
Confidence 367889999985 2 2355666666654
No 6
>3bmz_A Putative uncharacterized protein; violacein, biosynthetic protein; HET: PG4 PGE; 1.21A {Chromobacterium violaceum} PDB: 2zf3_A 2zf4_A*
Probab=9.25 E-value=86 Score=22.89 Aligned_cols=16 Identities=25% Similarity=0.584 Sum_probs=14.5
Q ss_pred CCeEEEECCCCCCccc
Q 030040 149 GSKIVFTNGSQDPWRH 164 (184)
Q Consensus 149 ~sniiftnG~~DPW~~ 164 (184)
+.||.=+.|.++||+.
T Consensus 40 ~rniCRIDGlFNPWsE 55 (199)
T 3bmz_A 40 ERDICRIDGLFNPWSE 55 (199)
T ss_dssp TTTEEEEEEECSSCCH
T ss_pred ccCeeeeccccCCCcc
Confidence 5789999999999987
No 7
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus}
Probab=8.96 E-value=1.3e+02 Score=23.19 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=20.2
Q ss_pred hHHHHHhcCCCCCCCCeEEEECCCCCCcccCc
Q 030040 135 VDSTNIYYGGTKIAGSKIVFTNGSQDPWRHAS 166 (184)
Q Consensus 135 v~~~n~~yGG~~~~~sniiftnG~~DPW~~~g 166 (184)
+.+-....| .......++++.|.+||-|.+=
T Consensus 62 ~~~~~~~~~-~~~~~~~~V~~~GtFD~~H~GH 92 (236)
T 3hl4_A 62 VTMEEACRG-TPCERPVRVYADGIFDLFHSGH 92 (236)
T ss_dssp CCHHHHHHC-CCTTSCEEEEEEECCTTCCHHH
T ss_pred ccHHHHhcC-CCCCCCeEEEEeccCCCCCHHH
Confidence 333344434 3234567899999999999864
No 8
>1dw0_A Cytochrome C; asparagine ligation, oxygen binding, disulfide bridge, oxygen storage/transport complex; HET: HEM; 1.82A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1dw1_A* 1dw2_A* 1dw3_A*
Probab=8.09 E-value=1.6e+02 Score=19.95 Aligned_cols=14 Identities=21% Similarity=0.517 Sum_probs=12.6
Q ss_pred hhhHHHHhHHhcCC
Q 030040 116 TRYHLDLCKNVFGE 129 (184)
Q Consensus 116 ~~~~~~~C~~~Fg~ 129 (184)
.++|.+.|++++|-
T Consensus 82 ekwf~rnc~~v~gr 95 (112)
T 1dw0_A 82 EKWLGRNCNSVIGR 95 (112)
T ss_dssp HHHHHHHHHHHHSS
T ss_pred HHHHHhhhhHHHcc
Confidence 68899999999994
No 9
>1mmc_A AC-AMP2, antimicrobial peptide 2; antifungal antimicrobial, chitin-binding; NMR {Amaranthus caudatus} SCOP: g.3.1.2 PDB: 1zuv_A 1zwu_A* 1znt_A*
Probab=6.78 E-value=1.2e+02 Score=15.49 Aligned_cols=12 Identities=8% Similarity=0.456 Sum_probs=8.8
Q ss_pred cccccccccccC
Q 030040 92 QVCTEVAFFQVA 103 (184)
Q Consensus 92 QtCtE~g~fqt~ 103 (184)
+.|+++||--++
T Consensus 13 ~CCS~~G~CGtt 24 (30)
T 1mmc_A 13 MCCSQFGYCGKG 24 (30)
T ss_dssp CEECTTSCEESS
T ss_pred CCCCCCCcccCc
Confidence 478889886554
No 10
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=6.27 E-value=2.9e+02 Score=22.99 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=17.1
Q ss_pred HHHHhcCCCCCCCCeEEEECCCC
Q 030040 137 STNIYYGGTKIAGSKIVFTNGSQ 159 (184)
Q Consensus 137 ~~n~~yGG~~~~~sniiftnG~~ 159 (184)
+...++||.....++|++++|..
T Consensus 141 ~~~~~~gG~~~~~~~i~~t~G~~ 163 (498)
T 3ihj_A 141 YITRRDGGVPADPDNIYLTTGAS 163 (498)
T ss_dssp HHHHHTTTCCCCGGGEEEESSHH
T ss_pred HHHHhcCCCCCCcccEEEcCCHH
Confidence 44555667777788999999963
Done!