Query 030040
Match_columns 184
No_of_seqs 118 out of 801
Neff 8.1
Searched_HMMs 13730
Date Mon Mar 25 12:00:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030040.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030040hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mmca_ g.3.1.2 (A:) Antimicro 29.9 6.2 0.00045 18.5 0.3 10 92-101 13-22 (30)
2 d1g47a1 g.39.1.3 (A:1-35) Pinc 13.1 25 0.0018 17.4 0.4 11 149-159 20-30 (35)
3 d1j5ja_ g.3.7.2 (A:) Bekm-1 {L 10.7 56 0.004 15.8 1.3 9 121-129 15-23 (36)
4 d2co7b1 b.1.11.1 (B:8-135) Per 10.3 38 0.0027 21.6 0.7 16 142-157 4-19 (128)
5 d1tg6a1 c.14.1.1 (A:1-193) Clp 9.5 35 0.0025 23.5 0.3 17 150-166 26-42 (193)
6 d1dw0a_ a.3.1.1 (A:) SHP, an o 8.2 73 0.0053 20.0 1.5 14 116-129 82-95 (112)
7 d1v7fa_ g.3.6.2 (A:) Phrixotox 8.0 41 0.003 15.5 0.1 7 89-96 5-11 (29)
8 d2r8ba1 c.69.1.14 (A:44-246) U 7.9 75 0.0055 20.6 1.6 19 148-166 142-160 (203)
9 d1d2fa_ c.67.1.3 (A:) Modulato 7.1 1.2E+02 0.0085 21.8 2.5 23 137-160 47-69 (361)
10 d1wsta1 c.67.1.1 (A:13-415) Mu 6.9 1.4E+02 0.01 21.8 2.9 24 136-160 82-105 (403)
No 1
>d1mmca_ g.3.1.2 (A:) Antimicrobial peptide 2, AC-AMP2 {Tassel (Amaranthus caudatus) [TaxId: 3567]}
Probab=29.92 E-value=6.2 Score=18.51 Aligned_cols=10 Identities=10% Similarity=0.587 Sum_probs=7.9
Q ss_pred cccccccccc
Q 030040 92 QVCTEVAFFQ 101 (184)
Q Consensus 92 QtCtE~g~fq 101 (184)
+.|++|||.-
T Consensus 13 mccsqfgycg 22 (30)
T d1mmca_ 13 MCCSQFGYCG 22 (30)
T ss_dssp CEECTTSCEE
T ss_pred chhhhcCccc
Confidence 5899999853
No 2
>d1g47a1 g.39.1.3 (A:1-35) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.10 E-value=25 Score=17.35 Aligned_cols=11 Identities=45% Similarity=0.567 Sum_probs=8.8
Q ss_pred CCeEEEECCCC
Q 030040 149 GSKIVFTNGSQ 159 (184)
Q Consensus 149 ~sniiftnG~~ 159 (184)
..+|+-+||++
T Consensus 20 ~EkiVNSnGEl 30 (35)
T d1g47a1 20 AEKIVNSNGEL 30 (35)
T ss_dssp TTTCEEETTEE
T ss_pred hHHhhcCCCcc
Confidence 47888889876
No 3
>d1j5ja_ g.3.7.2 (A:) Bekm-1 {Lesser asian scorpion (Buthus eupeus) [TaxId: 34648]}
Probab=10.72 E-value=56 Score=15.81 Aligned_cols=9 Identities=44% Similarity=1.091 Sum_probs=7.5
Q ss_pred HHhHHhcCC
Q 030040 121 DLCKNVFGE 129 (184)
Q Consensus 121 ~~C~~~Fg~ 129 (184)
..|+..||+
T Consensus 15 pvck~~fgk 23 (36)
T d1j5ja_ 15 PVCKSRFGK 23 (36)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHcCC
Confidence 679999994
No 4
>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]}
Probab=10.31 E-value=38 Score=21.56 Aligned_cols=16 Identities=13% Similarity=0.495 Sum_probs=11.4
Q ss_pred cCCCCCCCCeEEEECC
Q 030040 142 YGGTKIAGSKIVFTNG 157 (184)
Q Consensus 142 yGG~~~~~sniiftnG 157 (184)
|.|..++.|||||..+
T Consensus 4 ~~gv~l~~TRvi~~~~ 19 (128)
T d2co7b1 4 LFSVKLGATRVIYHAG 19 (128)
T ss_dssp EEECEESCSEEEEETT
T ss_pred EEEEEECCeEEEEcCC
Confidence 4567778888888554
No 5
>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}
Probab=9.55 E-value=35 Score=23.46 Aligned_cols=17 Identities=24% Similarity=0.184 Sum_probs=15.1
Q ss_pred CeEEEECCCCCCcccCc
Q 030040 150 SKIVFTNGSQDPWRHAS 166 (184)
Q Consensus 150 sniiftnG~~DPW~~~g 166 (184)
+||||.+|.+|++.+--
T Consensus 26 ~Riifl~g~I~~~~~~~ 42 (193)
T d1tg6a1 26 ERIVCVMGPIDDSVASL 42 (193)
T ss_dssp TTEEEEESSBCHHHHHH
T ss_pred cCEEEECCEEchHHHHH
Confidence 89999999999997744
No 6
>d1dw0a_ a.3.1.1 (A:) SHP, an oxygen binding cytochrome c {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=8.22 E-value=73 Score=19.99 Aligned_cols=14 Identities=21% Similarity=0.517 Sum_probs=12.4
Q ss_pred hhhHHHHhHHhcCC
Q 030040 116 TRYHLDLCKNVFGE 129 (184)
Q Consensus 116 ~~~~~~~C~~~Fg~ 129 (184)
.++|.+.|.++||-
T Consensus 82 EKWF~RNC~dVlgR 95 (112)
T d1dw0a_ 82 EKWLGRNCNSVIGR 95 (112)
T ss_dssp HHHHHHHHHHHHSS
T ss_pred HHHHHhhchhhhcc
Confidence 57899999999994
No 7
>d1v7fa_ g.3.6.2 (A:) Phrixotoxin 1 (PaTX1) {Chilean copper tarantula (Phrixotrichus auratus) [TaxId: 269635]}
Probab=7.98 E-value=41 Score=15.48 Aligned_cols=7 Identities=29% Similarity=1.355 Sum_probs=3.7
Q ss_pred eecccccc
Q 030040 89 WWFQVCTE 96 (184)
Q Consensus 89 W~~QtCtE 96 (184)
|+| ||.+
T Consensus 5 wmw-tcds 11 (29)
T d1v7fa_ 5 WMW-TCDS 11 (29)
T ss_dssp TTC-BCCT
T ss_pred hee-eccc
Confidence 666 4543
No 8
>d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=7.93 E-value=75 Score=20.61 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=15.4
Q ss_pred CCCeEEEECCCCCCcccCc
Q 030040 148 AGSKIVFTNGSQDPWRHAS 166 (184)
Q Consensus 148 ~~sniiftnG~~DPW~~~g 166 (184)
....++++||+.||+-+..
T Consensus 142 ~~~~~~i~hG~~D~~vp~~ 160 (203)
T d2r8ba1 142 PTRRVLITAGERDPICPVQ 160 (203)
T ss_dssp TTCEEEEEEETTCTTSCHH
T ss_pred ccchhhccccCCCCcccHH
Confidence 4568999999999997643
No 9
>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}
Probab=7.06 E-value=1.2e+02 Score=21.84 Aligned_cols=23 Identities=13% Similarity=-0.031 Sum_probs=16.4
Q ss_pred HHHHhcCCCCCCCCeEEEECCCCC
Q 030040 137 STNIYYGGTKIAGSKIVFTNGSQD 160 (184)
Q Consensus 137 ~~n~~yGG~~~~~sniiftnG~~D 160 (184)
+.+.+|| .++..++|+.++|...
T Consensus 47 ~~~~~~g-~~~~~~~i~it~G~~~ 69 (361)
T d1d2fa_ 47 WFSTQHY-TAIDSQTVVYGPSVIY 69 (361)
T ss_dssp HHHHHSC-CCCCGGGEEEESCHHH
T ss_pred HHHHHhC-CCCCcceEEEeCCHHH
Confidence 4555665 6777889999999743
No 10
>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}
Probab=6.91 E-value=1.4e+02 Score=21.76 Aligned_cols=24 Identities=21% Similarity=0.247 Sum_probs=17.4
Q ss_pred HHHHHhcCCCCCCCCeEEEECCCCC
Q 030040 136 DSTNIYYGGTKIAGSKIVFTNGSQD 160 (184)
Q Consensus 136 ~~~n~~yGG~~~~~sniiftnG~~D 160 (184)
++.+.++| ..+..++|++++|...
T Consensus 82 ~~l~~~~g-~~~~~~~I~it~G~~~ 105 (403)
T d1wsta1 82 RWMEKRYD-IPMSKVEIMTVAGSQQ 105 (403)
T ss_dssp HHHHHHHC-CCCTTCEEEEESSHHH
T ss_pred HHHHHHhC-CCCChHHeeecccchH
Confidence 45555555 6778899999999643
Done!