BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030041
         (184 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From
           Mycobacterium Avium 104
 pdb|3R9S|B Chain B, Structure Of A Carnitinyl-Coa Dehydratase From
           Mycobacterium Avium 104
 pdb|3R9S|C Chain C, Structure Of A Carnitinyl-Coa Dehydratase From
           Mycobacterium Avium 104
          Length = 267

 Score = 29.6 bits (65), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 60  LFLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFII 97
           +F +A Q+   +A R    G+PLS   +R W +I  ++
Sbjct: 150 VFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVV 187


>pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis
           Atcc Baa-968 K-10
 pdb|3R9T|B Chain B, Structure Of Echa1_1 From Mycobacterium Paratuberculosis
           Atcc Baa-968 K-10
 pdb|3R9T|C Chain C, Structure Of Echa1_1 From Mycobacterium Paratuberculosis
           Atcc Baa-968 K-10
          Length = 267

 Score = 29.6 bits (65), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 60  LFLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFII 97
           +F +A Q+   +A R    G+PLS   +R W +I  ++
Sbjct: 150 VFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVV 187


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.139    0.441 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,788,637
Number of Sequences: 62578
Number of extensions: 157414
Number of successful extensions: 353
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 340
Number of HSP's gapped (non-prelim): 14
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)