BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030041
         (184 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q75D68|SEC17_ASHGO Vesicular-fusion protein SEC17 OS=Ashbya gossypii (strain ATCC
           10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEC17
           PE=3 SV=1
          Length = 291

 Score = 34.3 bits (77), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 24/119 (20%)

Query: 68  LIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHT---KYRT 124
           L + A+  +   K LS  G              F+  AE  + AG+   A +T    Y+ 
Sbjct: 39  LYVEAANLYRLSKELSAAGD------------TFWKAAECQVEAGNEDEAGNTFVEAYKC 86

Query: 125 IWGENPP-SCQTV--------RKGVFAAGAAFVFFTAIVSEFYYICYSKARESFQPYGG 174
             G NP  +C+ +        RKG F  GA F F  A V E     Y +ARE+++  G 
Sbjct: 87  YKGANPERACEALERAIAIFTRKGQFRRGAYFKFELAEVQETDLQDYGRARENYELAGD 145


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.329    0.140    0.445 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,889,816
Number of Sequences: 539616
Number of extensions: 2349509
Number of successful extensions: 6712
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6712
Number of HSP's gapped (non-prelim): 5
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.6 bits)