Query 030041
Match_columns 184
No_of_seqs 105 out of 220
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 07:36:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030041.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030041hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06749 DUF1218: Protein of u 100.0 4.2E-30 9.1E-35 190.5 9.0 95 57-154 1-97 (97)
2 cd07912 Tweety_N N-terminal do 89.4 1.7 3.7E-05 40.1 7.8 28 55-82 43-70 (418)
3 PF07344 Amastin: Amastin surf 86.9 5.6 0.00012 31.4 8.4 89 4-109 66-155 (155)
4 PF04906 Tweety: Tweety; Inte 80.2 3 6.5E-05 38.2 4.8 31 54-84 22-52 (406)
5 PF05478 Prominin: Prominin; 79.2 8.2 0.00018 38.3 7.8 75 43-117 406-492 (806)
6 PF09788 Tmemb_55A: Transmembr 79.0 5.6 0.00012 34.5 5.8 65 72-154 177-243 (256)
7 PF05360 YiaAB: yiaA/B two hel 78.0 3.2 6.9E-05 27.3 3.2 42 95-151 2-43 (53)
8 KOG4433 Tweety transmembrane/c 69.2 7 0.00015 36.9 4.3 49 54-102 46-98 (526)
9 PF05478 Prominin: Prominin; 58.9 41 0.00089 33.5 7.7 25 87-111 139-163 (806)
10 PTZ00201 amastin surface glyco 54.0 1.1E+02 0.0025 25.3 8.5 92 51-162 77-170 (192)
11 PF11169 DUF2956: Protein of u 50.0 13 0.00029 27.9 2.1 21 87-107 82-102 (103)
12 PTZ00201 amastin surface glyco 47.9 42 0.00091 27.9 5.0 96 5-118 79-179 (192)
13 PF14798 Ca_hom_mod: Calcium h 45.2 48 0.001 28.6 5.1 63 47-120 13-75 (251)
14 PF13903 Claudin_2: PMP-22/EMP 42.5 1.5E+02 0.0032 22.4 10.2 26 91-116 104-129 (172)
15 PF10267 Tmemb_cc2: Predicted 38.5 45 0.00097 30.7 4.1 46 52-97 338-383 (395)
16 KOG1292 Xanthine/uracil transp 36.8 54 0.0012 31.2 4.4 70 88-168 206-299 (510)
17 COG4682 Predicted membrane pro 35.2 1.2E+02 0.0027 23.6 5.4 29 90-119 8-36 (128)
18 PF07172 GRP: Glycine rich pro 32.2 83 0.0018 23.1 3.9 14 1-14 1-14 (95)
19 PF07344 Amastin: Amastin surf 31.1 2.6E+02 0.0056 21.9 9.7 92 43-157 54-150 (155)
20 PF07062 Clc-like: Clc-like; 30.8 2.4E+02 0.0051 23.8 6.9 56 56-116 105-163 (211)
21 PF10724 DUF2516: Protein of u 30.7 1.4E+02 0.0031 22.2 5.0 16 6-21 15-30 (100)
22 PF03032 Brevenin: Brevenin/es 29.6 38 0.00082 21.8 1.5 21 7-30 7-27 (46)
23 PRK11383 hypothetical protein; 29.4 1.3E+02 0.0028 24.0 4.8 45 92-151 73-117 (145)
24 PRK11383 hypothetical protein; 28.7 1.5E+02 0.0033 23.6 5.1 25 92-117 10-34 (145)
25 KOG4684 Uncharacterized conser 28.4 86 0.0019 26.9 3.9 45 68-112 185-231 (275)
26 PF04103 CD20: CD20-like famil 26.3 11 0.00024 28.4 -1.7 89 8-121 4-93 (150)
27 PF13903 Claudin_2: PMP-22/EMP 26.1 2.6E+02 0.0056 20.9 6.1 25 45-69 146-170 (172)
28 PLN02392 probable steroid redu 26.1 41 0.00089 29.2 1.6 44 99-142 149-192 (260)
29 PF00822 PMP22_Claudin: PMP-22 25.5 2E+02 0.0043 21.8 5.3 56 53-121 75-130 (166)
30 PF13828 DUF4190: Domain of un 24.0 2.3E+02 0.0051 19.0 5.1 21 86-106 40-60 (62)
31 KOG4016 Synaptic vesicle prote 21.3 5.3E+02 0.011 22.1 11.8 34 39-72 54-88 (233)
32 PF01102 Glycophorin_A: Glycop 20.8 93 0.002 24.0 2.5 24 3-26 68-91 (122)
33 KOG4112 Signal peptidase subun 20.2 1.3E+02 0.0029 22.4 3.1 22 8-29 30-51 (101)
No 1
>PF06749 DUF1218: Protein of unknown function (DUF1218); InterPro: IPR009606 This family contains hypothetical plant proteins of unknown function. Family members contain a number of conserved cysteine residues.
Probab=99.96 E-value=4.2e-30 Score=190.47 Aligned_cols=95 Identities=49% Similarity=0.874 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCCCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCCCCccc
Q 030041 57 GAFLFLLASQVLIMLASRCFCCGKPLSP--GGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHTKYRTIWGENPPSCQ 134 (184)
Q Consensus 57 ~A~~~Ll~aqi~~~~~~~C~cc~~~~~~--s~~r~~a~~~~v~SWi~f~iA~~~ll~Ga~~n~~~~~~~~~~~~~~~~C~ 134 (184)
+|+++|+++|+++|+++||.||+|+.+| +++|+++++||++||++|++||++|++|+++|++|+|++.+. +++|+
T Consensus 1 ~A~~~L~~aqvi~~~~~gC~cc~~~~~~~~~~~r~~a~~~~v~SWi~f~ia~~~ll~ga~~n~~~~~~~~~~---~~~C~ 77 (97)
T PF06749_consen 1 AAAVFLLAAQVIANVAGGCLCCGKRVSPKSSRNRTLAVVFFVLSWIVFIIAEALLLAGASMNARHTKGNGWF---NPSCY 77 (97)
T ss_pred CHHHHHHHHHHHHHHHhcceEeCCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhcccccccccccc---CCccc
Confidence 4899999999999999999988888666 479999999999999999999999999999999999998773 88999
Q ss_pred ccccceehhhHHHHHHHHHH
Q 030041 135 TVRKGVFAAGAAFVFFTAIV 154 (184)
Q Consensus 135 ~~k~GvFa~aa~l~l~t~~~ 154 (184)
++|+|+|++||+|+|+|+++
T Consensus 78 ~~k~GvF~~~a~l~l~t~~f 97 (97)
T PF06749_consen 78 TVKKGVFAGGAVLSLVTALF 97 (97)
T ss_pred ccCCceeeHhHHHHHHHHhC
Confidence 99999999999999999864
No 2
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=89.36 E-value=1.7 Score=40.08 Aligned_cols=28 Identities=14% Similarity=0.250 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCC
Q 030041 55 GVGAFLFLLASQVLIMLASRCFCCGKPL 82 (184)
Q Consensus 55 Gv~A~~~Ll~aqi~~~~~~~C~cc~~~~ 82 (184)
|..|++.+++.-+...+...|.||||+.
T Consensus 43 a~iaavwlil~ll~ll~~~~~~CCcr~~ 70 (418)
T cd07912 43 ASIPAACLILSLLFLLVYLITRCCDRKP 70 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 4555555655556666555566665553
No 3
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=86.92 E-value=5.6 Score=31.40 Aligned_cols=89 Identities=19% Similarity=0.187 Sum_probs=59.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhcccceeeecCCCCcceeecCCCchhhhHHHHHHHHHHHHHHHHHHhccccccCCCC
Q 030041 4 KLLIATVFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFLFLLASQVLIMLASRCFCCGKPLS 83 (184)
Q Consensus 4 ~~v~~vv~~lgliAfiLg~~AE~~r~~~~~~~~~~~~~~~C~Yp~~~A~~lGv~A~~~Ll~aqi~~~~~~~C~cc~~~~~ 83 (184)
-...++..+++..++++|+..=...+. .+-+...|.+.+++++++.=++....=.=..|. +.+
T Consensus 66 ~afaIisi~~~~~a~v~g~~~l~~~~~----------------~r~v~l~L~~~~~~~~~v~wa~~v~~Y~~~~C~-~~~ 128 (155)
T PF07344_consen 66 QAFAIISIFVYGAAFVLGVLLLCCCSC----------------LRWVCLVLNIVGIVTLLVVWALMVVVYYGGFCG-ALK 128 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc-Ccc
Confidence 346778889999999999886655322 123456788888888877766554433333343 333
Q ss_pred CCC-ChHHHHHHHHHHHHHHHHHHHHH
Q 030041 84 PGG-SRAWAVILFIICWVFFFIAEVCL 109 (184)
Q Consensus 84 ~s~-~r~~a~~~~v~SWi~f~iA~~~l 109 (184)
+.. +-..+-.+++.+|...+++.+.|
T Consensus 129 ~~~~~yg~GF~L~v~aw~l~~i~ii~L 155 (155)
T PF07344_consen 129 SRGYKYGAGFALFVAAWCLDIINIIFL 155 (155)
T ss_pred CCCcccCccHHHHHHHHHHHHHHHHhC
Confidence 332 44458899999999999987754
No 4
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=80.24 E-value=3 Score=38.17 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccccCCCCC
Q 030041 54 MGVGAFLFLLASQVLIMLASRCFCCGKPLSP 84 (184)
Q Consensus 54 lGv~A~~~Ll~aqi~~~~~~~C~cc~~~~~~ 84 (184)
+|..+++.|.+.-+...+-.-|.||+|+.++
T Consensus 22 la~v~~~~l~l~Ll~ll~yl~~~CC~r~~~~ 52 (406)
T PF04906_consen 22 LASVAAACLALSLLFLLIYLICRCCCRRPRE 52 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Confidence 4556666777777766666667777666433
No 5
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=79.15 E-value=8.2 Score=38.28 Aligned_cols=75 Identities=23% Similarity=0.390 Sum_probs=41.7
Q ss_pred eeecCCCchh-hhHHHHHHHHHHHHHHHHHHhccccccCCCCCC--------CCh---HHHHHHHHHHHHHHHHHHHHHH
Q 030041 43 YCIYDSDIST-GMGVGAFLFLLASQVLIMLASRCFCCGKPLSPG--------GSR---AWAVILFIICWVFFFIAEVCLL 110 (184)
Q Consensus 43 ~C~Yp~~~A~-~lGv~A~~~Ll~aqi~~~~~~~C~cc~~~~~~s--------~~r---~~a~~~~v~SWi~f~iA~~~ll 110 (184)
+-+|.++.-. +++++..++|.+.=.+.-...||++-.++..|+ +.+ .-..+.|++||+..+++.+.|+
T Consensus 406 ~~~y~~yR~~~~lil~~~llLIv~~~~lGLl~G~~G~~~~~~p~~r~c~~~tGg~~Lm~gv~~~Flf~~~l~l~~~~~Fl 485 (806)
T PF05478_consen 406 YEKYDSYRWIVGLILCCVLLLIVLCLLLGLLCGCCGYRRRADPTDRGCSSNTGGNFLMAGVGLSFLFSWFLMLLVLFYFL 485 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455444444 445555555555333333344443322222222 111 1234568899999999999999
Q ss_pred HHhhhcc
Q 030041 111 AGSVRNA 117 (184)
Q Consensus 111 ~Ga~~n~ 117 (184)
.|.....
T Consensus 486 ~G~~~~~ 492 (806)
T PF05478_consen 486 VGGNTYT 492 (806)
T ss_pred HHhhhhe
Confidence 9998753
No 6
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=79.05 E-value=5.6 Score=34.49 Aligned_cols=65 Identities=26% Similarity=0.408 Sum_probs=41.4
Q ss_pred HhccccccCCCCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCCCCcccccccceehhhHHHHH
Q 030041 72 ASRCFCCGKPLSPG--GSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHTKYRTIWGENPPSCQTVRKGVFAAGAAFVF 149 (184)
Q Consensus 72 ~~~C~cc~~~~~~s--~~r~~a~~~~v~SWi~f~iA~~~ll~Ga~~n~~~~~~~~~~~~~~~~C~~~k~GvFa~aa~l~l 149 (184)
..+|+.|.|-.+-| -.|..+++||+++-+.+++|..+. +|+...+.+ +.|++..-..+.|
T Consensus 177 lARCPHCrKvSSVG~~faRkR~i~f~llgllfliiaiglt-vGT~~~A~~-----------------~~giY~~wv~~~l 238 (256)
T PF09788_consen 177 LARCPHCRKVSSVGPRFARKRAIIFFLLGLLFLIIAIGLT-VGTWTYAKT-----------------YGGIYVSWVGLFL 238 (256)
T ss_pred cccCCCCceeccccchHhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHhh-----------------cCcEeHHHHHHHH
Confidence 36899987665444 257779999999988776665554 555544321 3466666666655
Q ss_pred HHHHH
Q 030041 150 FTAIV 154 (184)
Q Consensus 150 ~t~~~ 154 (184)
+++++
T Consensus 239 ~a~~~ 243 (256)
T PF09788_consen 239 IALIC 243 (256)
T ss_pred HHHHH
Confidence 54433
No 7
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=77.97 E-value=3.2 Score=27.32 Aligned_cols=42 Identities=33% Similarity=0.482 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccccccCCCCCcccccccceehhhHHHHHHH
Q 030041 95 FIICWVFFFIAEVCLLAGSVRNAYHTKYRTIWGENPPSCQTVRKGVFAAGAAFVFFT 151 (184)
Q Consensus 95 ~v~SWi~f~iA~~~ll~Ga~~n~~~~~~~~~~~~~~~~C~~~k~GvFa~aa~l~l~t 151 (184)
...+|+.|+++..++..|.- |.+.. .--||.+..+-.+++.+
T Consensus 2 ~~~~~~~f~i~~~~~~iGl~-~~~~~--------------l~~KGy~~~~~l~~l~s 43 (53)
T PF05360_consen 2 VGQSWISFGISIVLMLIGLW-NAPLD--------------LSEKGYYAMGLLFLLFS 43 (53)
T ss_pred hhHHHHHHHHHHHHHHHHHH-hCCCC--------------HHHHHHHHHHHHHHHHH
Confidence 46799999999999999986 65543 22577787777766654
No 8
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=69.23 E-value=7 Score=36.87 Aligned_cols=49 Identities=20% Similarity=0.297 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccccCCCCCC----CChHHHHHHHHHHHHHH
Q 030041 54 MGVGAFLFLLASQVLIMLASRCFCCGKPLSPG----GSRAWAVILFIICWVFF 102 (184)
Q Consensus 54 lGv~A~~~Ll~aqi~~~~~~~C~cc~~~~~~s----~~r~~a~~~~v~SWi~f 102 (184)
+|..++.+|.+.-+...+.--|.||+|+..++ +-|-+...++|++-+++
T Consensus 46 la~l~aa~l~l~Ll~ll~yli~~cC~Rr~~~~~~~~~~~c~s~~l~I~tl~cc 98 (526)
T KOG4433|consen 46 LAALAAACLGLSLLFLLFYLICRCCCRRETTGRKRRRVRCLSWSLIIATLMCC 98 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCcceeeehHHHHHHHHH
Confidence 36677778888888777777788888876333 23333444444444443
No 9
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=58.89 E-value=41 Score=33.45 Aligned_cols=25 Identities=12% Similarity=0.376 Sum_probs=15.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Q 030041 87 SRAWAVILFIICWVFFFIAEVCLLA 111 (184)
Q Consensus 87 ~r~~a~~~~v~SWi~f~iA~~~ll~ 111 (184)
++.+++.+++++.+..+-.+..|++
T Consensus 139 R~~l~~~L~~~~~~il~g~i~aF~~ 163 (806)
T PF05478_consen 139 RGCLGILLLLLTLIILFGVICAFVA 163 (806)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777776665555555554
No 10
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=54.04 E-value=1.1e+02 Score=25.31 Aligned_cols=92 Identities=21% Similarity=0.236 Sum_probs=52.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCCC
Q 030041 51 STGMGVGAFLFLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHTKYRTIWGENP 130 (184)
Q Consensus 51 A~~lGv~A~~~Ll~aqi~~~~~~~C~cc~~~~~~s~~r~~a~~~~v~SWi~f~iA~~~ll~Ga~~n~~~~~~~~~~~~~~ 130 (184)
|-++.+.|.++..+|-+++-....|+. ..|++..++-+++ ++-.+..|+.+.-.++++ ..
T Consensus 77 aqAfaIISI~v~~aA~vlg~~~l~cc~--------~lr~vcl~Lnivg-----~vt~~VvWa~mv~~Y~~~-------~~ 136 (192)
T PTZ00201 77 AQALAVISILVYGAAFVLGLVLLYGCT--------IHRWVCLALNIVG-----AVTLGVVWAAMVVTYYKD-------DG 136 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccc--------hHHHHHHHHHHHH-----HHHHheeeeeEEEEEEcC-------CC
Confidence 446678888888888777666554432 2455444443333 333445566665555432 23
Q ss_pred Cccccccc-c-eehhhHHHHHHHHHHHHHHHHHH
Q 030041 131 PSCQTVRK-G-VFAAGAAFVFFTAIVSEFYYICY 162 (184)
Q Consensus 131 ~~C~~~k~-G-vFa~aa~l~l~t~~~~i~~Yv~~ 162 (184)
+.|+..|+ + -|+.|=.|-+++-.+.+.--+.+
T Consensus 137 ~~C~~~~~~~~~yGaGF~Llv~AW~L~iinii~l 170 (192)
T PTZ00201 137 PLCPRVRDMGYRFGTGFALLVVAWILDILNIIFL 170 (192)
T ss_pred ccccccccCCCCccCcHHHHHHHHHHHHHHHHHH
Confidence 47887777 4 46666666666666665554444
No 11
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=49.97 E-value=13 Score=27.95 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=15.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHH
Q 030041 87 SRAWAVILFIICWVFFFIAEV 107 (184)
Q Consensus 87 ~r~~a~~~~v~SWi~f~iA~~ 107 (184)
...+.-+++++||+-|++-+.
T Consensus 82 ~~~LPW~LL~lSW~gF~~Y~~ 102 (103)
T PF11169_consen 82 SSWLPWGLLVLSWIGFIAYIF 102 (103)
T ss_pred ccchhHHHHHHHHHHHHHHHH
Confidence 344455699999999977543
No 12
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=47.95 E-value=42 Score=27.87 Aligned_cols=96 Identities=14% Similarity=0.123 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccceeeecCCCCcceeecCCCchhhhHHHHHHHHHHHHHHHHHHhcc----ccccC
Q 030041 5 LLIATVFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFLFLLASQVLIMLASRC----FCCGK 80 (184)
Q Consensus 5 ~v~~vv~~lgliAfiLg~~AE~~r~~~~~~~~~~~~~~~C~Yp~~~A~~lGv~A~~~Ll~aqi~~~~~~~C----~cc~~ 80 (184)
...++.++++.+|++||+.-=-..+-- +=-...|.+.+++.+.+.=+. ++.+-. ..|.+
T Consensus 79 AfaIISI~v~~aA~vlg~~~l~cc~~l----------------r~vcl~Lnivg~vt~~VvWa~-mv~~Y~~~~~~~C~~ 141 (192)
T PTZ00201 79 ALAVISILVYGAAFVLGLVLLYGCTIH----------------RWVCLALNIVGAVTLGVVWAA-MVVTYYKDDGPLCPR 141 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchH----------------HHHHHHHHHHHHHHHheeeee-EEEEEEcCCCccccc
Confidence 356778888999999998554422211 111223344444433332221 111100 01221
Q ss_pred CCCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 030041 81 PLSP-GGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAY 118 (184)
Q Consensus 81 ~~~~-s~~r~~a~~~~v~SWi~f~iA~~~ll~Ga~~n~~ 118 (184)
.+. +-+-.-+-.+++.+|...+|..+.++..--.+..
T Consensus 142 -~~~~~~~yGaGF~Llv~AW~L~iinii~lllp~~~~~~ 179 (192)
T PTZ00201 142 -VRDMGYRFGTGFALLVVAWILDILNIIFLLLPCTVPAS 179 (192)
T ss_pred -cccCCCCccCcHHHHHHHHHHHHHHHHHHHhccccCCc
Confidence 122 3334457889999999999999999987644433
No 13
>PF14798 Ca_hom_mod: Calcium homeostasis modulator
Probab=45.17 E-value=48 Score=28.58 Aligned_cols=63 Identities=24% Similarity=0.329 Sum_probs=48.4
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHhccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 030041 47 DSDISTGMGVGAFLFLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHT 120 (184)
Q Consensus 47 p~~~A~~lGv~A~~~Ll~aqi~~~~~~~C~cc~~~~~~s~~r~~a~~~~v~SWi~f~iA~~~ll~Ga~~n~~~~ 120 (184)
.++.+++.|+.+++-+.--|+.-++.=.|||- |+.|-.-+.+|+ ++-|.++|+.|-..|++-.
T Consensus 13 ~~~~~~~ngi~~llt~g~e~lfs~~~F~CPC~-----~~~N~~YGl~fL------lvPAl~LfllG~~ln~~~W 75 (251)
T PF14798_consen 13 SHSESLGNGICALLTAGGEQLFSSFVFSCPCS-----PGWNFLYGLVFL------LVPALVLFLLGYLLNRRTW 75 (251)
T ss_pred hcchhHHHHHHHHHHHHHHhhhheeeeecCCC-----CcccchhHhHHH------HHHHHHHHHHHHHHhcccc
Confidence 35677889999999999999999999999974 334544444433 5689999999999998643
No 14
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=42.51 E-value=1.5e+02 Score=22.37 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 030041 91 AVILFIICWVFFFIAEVCLLAGSVRN 116 (184)
Q Consensus 91 a~~~~v~SWi~f~iA~~~ll~Ga~~n 116 (184)
+.+++++|.++.+++.+.+..--..|
T Consensus 104 ~~~~~~~ag~~~l~~l~~~~~~~~~~ 129 (172)
T PF13903_consen 104 AGILFILAGLCILIALIVFVVSVNYE 129 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788899998888888777666554
No 15
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=38.55 E-value=45 Score=30.74 Aligned_cols=46 Identities=24% Similarity=0.300 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhccccccCCCCCCCChHHHHHHHHH
Q 030041 52 TGMGVGAFLFLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFII 97 (184)
Q Consensus 52 ~~lGv~A~~~Ll~aqi~~~~~~~C~cc~~~~~~s~~r~~a~~~~v~ 97 (184)
..|+-.-=++|.+.+++...++-++.|-.|.-.++.|++.++++++
T Consensus 338 ~~l~k~inllL~l~~vlLv~vSt~~~~~~Pl~~tR~r~~~t~~~v~ 383 (395)
T PF10267_consen 338 ALLGKLINLLLTLLTVLLVFVSTVANCPLPLTRTRLRTLTTLLLVG 383 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHhhccHHHHHHHHHHH
Confidence 4455454566677788777777777888887666677766655443
No 16
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=36.83 E-value=54 Score=31.16 Aligned_cols=70 Identities=26% Similarity=0.429 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCCCCcccccccceeh-------------------hhHHH-
Q 030041 88 RAWAVILFIICWVFFFIAEVCLLAGSVRNAYHTKYRTIWGENPPSCQTVRKGVFA-------------------AGAAF- 147 (184)
Q Consensus 88 r~~a~~~~v~SWi~f~iA~~~ll~Ga~~n~~~~~~~~~~~~~~~~C~~~k~GvFa-------------------~aa~l- 147 (184)
|---++...+.|+. ++++-+.|+-.++.++. ..+|++.|.+++. ++.++
T Consensus 206 ~f~vll~i~ivW~~---~~iLT~tgay~~~~~~t--------~~~~RTD~~~vi~~apWi~vPyP~QwG~P~f~~~~~f~ 274 (510)
T KOG1292|consen 206 RFPVLLAIAIVWLY---CFILTITGAYPYKPTTT--------QSSCRTDRNGVISSAPWIRVPYPFQWGPPTFSAGLVFA 274 (510)
T ss_pred hccHHHHHHHHHHH---HHHHHhccccCCCcccc--------CCcccccHhhhhccCCceeecCCCccCCCcccHHHHHH
Confidence 33345556677865 57788888877765443 2356666655443 33333
Q ss_pred ----HHHHHHHHHHHHHHHhhcccC
Q 030041 148 ----VFFTAIVSEFYYICYSKARES 168 (184)
Q Consensus 148 ----~l~t~~~~i~~Yv~~~~a~~~ 168 (184)
++++++-++..|....|--+.
T Consensus 275 m~aa~~va~iES~G~y~a~ar~~~a 299 (510)
T KOG1292|consen 275 MMAASLVAMIESTGDYIACARLSSA 299 (510)
T ss_pred HHHHHHHHHHHhcchHHHHHHHhcC
Confidence 456677788888877665443
No 17
>COG4682 Predicted membrane protein [Function unknown]
Probab=35.18 E-value=1.2e+02 Score=23.57 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 030041 90 WAVILFIICWVFFFIAEVCLLAGSVRNAYH 119 (184)
Q Consensus 90 ~a~~~~v~SWi~f~iA~~~ll~Ga~~n~~~ 119 (184)
.+..+-++||..++++++.++.|- +|+.+
T Consensus 8 ~s~af~~va~~~lv~G~vvyLiGL-Wna~~ 36 (128)
T COG4682 8 VSKAFTIVAWLALVVGAVVYLVGL-WNACM 36 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh-cccch
Confidence 355677899999999999999995 56543
No 18
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=32.16 E-value=83 Score=23.09 Aligned_cols=14 Identities=29% Similarity=0.368 Sum_probs=8.5
Q ss_pred CcchhhHHHHHHHH
Q 030041 1 MASKLLIATVFVFD 14 (184)
Q Consensus 1 ~~s~~v~~vv~~lg 14 (184)
|+|..++++.++|-
T Consensus 1 MaSK~~llL~l~LA 14 (95)
T PF07172_consen 1 MASKAFLLLGLLLA 14 (95)
T ss_pred CchhHHHHHHHHHH
Confidence 88877555544443
No 19
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=31.09 E-value=2.6e+02 Score=21.85 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=51.8
Q ss_pred eeecCCC---chhhhHHHHHHHHHHHHHHHHHHhccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 030041 43 YCIYDSD---ISTGMGVGAFLFLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYH 119 (184)
Q Consensus 43 ~C~Yp~~---~A~~lGv~A~~~Ll~aqi~~~~~~~C~cc~~~~~~s~~r~~a~~~~v~SWi~f~iA~~~ll~Ga~~n~~~ 119 (184)
.|...++ .+-++.+.+.++..++-+++-..-.|+ +..|++..++.++++++..+ .|+.+.+-++
T Consensus 54 ~C~~~~~~f~aa~afaIisi~~~~~a~v~g~~~l~~~--------~~~r~v~l~L~~~~~~~~~v-----~wa~~v~~Y~ 120 (155)
T PF07344_consen 54 NCPQRRSRFRAAQAFAIISIFVYGAAFVLGVLLLCCC--------SCLRWVCLVLNIVGIVTLLV-----VWALMVVVYY 120 (155)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHc
Confidence 5654433 244667888888888877776655442 13567677777777766544 4444445443
Q ss_pred cccccccCCCCCcccccccc--eehhhHHHHHHHHHHHHH
Q 030041 120 TKYRTIWGENPPSCQTVRKG--VFAAGAAFVFFTAIVSEF 157 (184)
Q Consensus 120 ~~~~~~~~~~~~~C~~~k~G--vFa~aa~l~l~t~~~~i~ 157 (184)
++.|...++. -|+.|=.|.+++=++.+.
T Consensus 121 ----------~~~C~~~~~~~~~yg~GF~L~v~aw~l~~i 150 (155)
T PF07344_consen 121 ----------GGFCGALKSRGYKYGAGFALFVAAWCLDII 150 (155)
T ss_pred ----------cCCCcCccCCCcccCccHHHHHHHHHHHHH
Confidence 2257655443 355554455444444433
No 20
>PF07062 Clc-like: Clc-like; InterPro: IPR010761 Clc proteins are a nine-member gene family of chloride channels that have diverse roles in the plasma membrane and in intracellular organelles, especially membrane excitability and the maintenance of osmotic balance [, ]. This family contains a number of Clc-like proteins that are approximately 250 residues long and their homologues. ; GO: 0016021 integral to membrane
Probab=30.80 E-value=2.4e+02 Score=23.76 Aligned_cols=56 Identities=13% Similarity=0.193 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHhc---cccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 030041 56 VGAFLFLLASQVLIMLASR---CFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRN 116 (184)
Q Consensus 56 v~A~~~Ll~aqi~~~~~~~---C~cc~~~~~~s~~r~~a~~~~v~SWi~f~iA~~~ll~Ga~~n 116 (184)
.+.+++++.+++.+..+.. |.+|.++ ....-.++.++++++..+|.+.+..-+-+-
T Consensus 105 ~AvLil~~~s~lf~~lsi~~~iCa~c~~~-----~ai~~~v~~~ia~l~S~~g~~iF~~~a~~~ 163 (211)
T PF07062_consen 105 KAVLILISFSMLFALLSICFGICAPCHPS-----FAIFYTVLVFIAALLSLIGLGIFFFNAHMV 163 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888888888887766553 4334322 225566777888888889988888766553
No 21
>PF10724 DUF2516: Protein of unknown function (DUF2516); InterPro: IPR019662 This entry represents a conserved protein in Actinobacteria. The function is not known.
Probab=30.68 E-value=1.4e+02 Score=22.17 Aligned_cols=16 Identities=25% Similarity=0.162 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHH
Q 030041 6 LIATVFVFDLIAFGLA 21 (184)
Q Consensus 6 v~~vv~~lgliAfiLg 21 (184)
+.+++.++++.+++.+
T Consensus 15 l~~~~~~~~v~Alv~a 30 (100)
T PF10724_consen 15 LSLVALVLAVWALVDA 30 (100)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455566666666654
No 22
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=29.56 E-value=38 Score=21.79 Aligned_cols=21 Identities=24% Similarity=0.532 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Q 030041 7 IATVFVFDLIAFGLAVAAEQRRST 30 (184)
Q Consensus 7 ~~vv~~lgliAfiLg~~AE~~r~~ 30 (184)
..++++||+||+-+| |..|..
T Consensus 7 llLlfflG~ISlSlC---eeEr~a 27 (46)
T PF03032_consen 7 LLLLFFLGTISLSLC---EEERDA 27 (46)
T ss_pred HHHHHHHHHcccchH---HHhccc
Confidence 356789999999999 777764
No 23
>PRK11383 hypothetical protein; Provisional
Probab=29.38 E-value=1.3e+02 Score=24.04 Aligned_cols=45 Identities=24% Similarity=0.437 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCCCCcccccccceehhhHHHHHHH
Q 030041 92 VILFIICWVFFFIAEVCLLAGSVRNAYHTKYRTIWGENPPSCQTVRKGVFAAGAAFVFFT 151 (184)
Q Consensus 92 ~~~~v~SWi~f~iA~~~ll~Ga~~n~~~~~~~~~~~~~~~~C~~~k~GvFa~aa~l~l~t 151 (184)
-++.-+||...+++..+|+.|- +|+.-. .--+|++..+=+++|+.
T Consensus 73 ~~f~~~cw~a~l~~i~LL~iGL-wNA~l~--------------lsEKGfY~~af~lsLFg 117 (145)
T PRK11383 73 SIYYMTCLTVFIISVALLMVGL-WNATLL--------------LSEKGFYGLAFFLSLFG 117 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hcCCcc--------------hhhhhHHHHHHHHHHHH
Confidence 4778899999999999999997 476422 22577787766666553
No 24
>PRK11383 hypothetical protein; Provisional
Probab=28.67 E-value=1.5e+02 Score=23.59 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 030041 92 VILFIICWVFFFIAEVCLLAGSVRNA 117 (184)
Q Consensus 92 ~~~~v~SWi~f~iA~~~ll~Ga~~n~ 117 (184)
-.|..+||+.++++...++.|-= |+
T Consensus 10 ~af~~~sw~al~~g~~~y~iGLw-nA 34 (145)
T PRK11383 10 PAFSIVSWIALVGGIVTYLLGLW-NA 34 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hc
Confidence 35678999999999999999864 54
No 25
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=28.37 E-value=86 Score=26.95 Aligned_cols=45 Identities=27% Similarity=0.406 Sum_probs=30.3
Q ss_pred HHHHHhccccccCCCCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHH
Q 030041 68 LIMLASRCFCCGKPLSPGG--SRAWAVILFIICWVFFFIAEVCLLAG 112 (184)
Q Consensus 68 ~~~~~~~C~cc~~~~~~s~--~r~~a~~~~v~SWi~f~iA~~~ll~G 112 (184)
+-|+..+|+.|.|-.+-|+ .|.-++.||++.-...+.|.++-+.-
T Consensus 185 ~tnaLArCPHCrKvSsvGsrfar~Ra~~ffilal~~avta~~lt~gT 231 (275)
T KOG4684|consen 185 LTNALARCPHCRKVSSVGSRFARRRALLFFILALTVAVTAVILTMGT 231 (275)
T ss_pred HHHHHhcCCcccchhhhhhHHhhhhhHHHHHHHHHHHHHHHHHHhhh
Confidence 4467789999977654442 24447888888887777776665543
No 26
>PF04103 CD20: CD20-like family; InterPro: IPR007237 This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulphide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm []. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts []. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton []. ; GO: 0016021 integral to membrane; PDB: 2OSL_Q 3BKY_P 3PP4_P.
Probab=26.26 E-value=11 Score=28.38 Aligned_cols=89 Identities=12% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccceeeecCCCCcceeecCCCchhhhHHHHHHHHHHHHHHHHHHhccccccCCCCCCC-
Q 030041 8 ATVFVFDLIAFGLAVAAEQRRSTATIQTDSEKNYNYCIYDSDISTGMGVGAFLFLLASQVLIMLASRCFCCGKPLSPGG- 86 (184)
Q Consensus 8 ~vv~~lgliAfiLg~~AE~~r~~~~~~~~~~~~~~~C~Yp~~~A~~lGv~A~~~Ll~aqi~~~~~~~C~cc~~~~~~s~- 86 (184)
++=+++|+++..||+.+...+... ..-.+.++-+.++..++=+++..+ .++|++
T Consensus 4 ~~qI~lGi~~i~lGi~~~~~~~~~-----------------~~~~~~piW~G~~fiisG~l~i~s--------~k~~~~~ 58 (150)
T PF04103_consen 4 VIQILLGILSIVLGIIALSLSSSV-----------------LVYIGYPIWGGIFFIISGILGIAS--------EKKPTKC 58 (150)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH-----------------HHHhcccHHHHHHHHhhHHHHHHH--------hcCCccc
Confidence 445688999999998888766530 111122333333333333333222 222322
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 030041 87 SRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHTK 121 (184)
Q Consensus 87 ~r~~a~~~~v~SWi~f~iA~~~ll~Ga~~n~~~~~ 121 (184)
.-....++.++|=+..+.+..+...+...+.++..
T Consensus 59 lv~~~l~lsi~s~~~a~~~i~l~~~~l~~~~~~~~ 93 (150)
T PF04103_consen 59 LVIASLVLSIVSALLALAGIILSSISLAQQHYYYC 93 (150)
T ss_dssp -----------------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 22345556677777777777777777776655443
No 27
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=26.06 E-value=2.6e+02 Score=20.93 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=18.8
Q ss_pred ecCCCchhhhHHHHHHHHHHHHHHH
Q 030041 45 IYDSDISTGMGVGAFLFLLASQVLI 69 (184)
Q Consensus 45 ~Yp~~~A~~lGv~A~~~Ll~aqi~~ 69 (184)
.+.=+-++.++.+|+++++++-++.
T Consensus 146 ~~~~gwSf~la~~a~~~~l~a~~l~ 170 (172)
T PF13903_consen 146 SYSYGWSFWLAWVAFILLLLAGILF 170 (172)
T ss_pred eEEECHHHHHHHHHHHHHHHHHHHH
Confidence 3344678888999999998887654
No 28
>PLN02392 probable steroid reductase DET2
Probab=26.05 E-value=41 Score=29.21 Aligned_cols=44 Identities=23% Similarity=0.270 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccccCCCCCcccccccceeh
Q 030041 99 WVFFFIAEVCLLAGSVRNAYHTKYRTIWGENPPSCQTVRKGVFA 142 (184)
Q Consensus 99 Wi~f~iA~~~ll~Ga~~n~~~~~~~~~~~~~~~~C~~~k~GvFa 142 (184)
|..+.++.+++++|...|-.+.....+..+++..-.+.+.|+|.
T Consensus 149 ~~~~~iG~~lF~~g~~~N~~sh~~L~~LRk~g~~Y~iP~GGlF~ 192 (260)
T PLN02392 149 WWRFFGGLVVFLWGMRINVWSDRVLVGLKREGGGYKVPRGGWFE 192 (260)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCeeECCCCCCcC
Confidence 55688999999999999965544333222223345567777774
No 29
>PF00822 PMP22_Claudin: PMP-22/EMP/MP20/Claudin family; InterPro: IPR004031 Several vertebrate small integral membrane glycoproteins are evolutionary related [, , ], including eye lens specific membrane protein 20 (MP20 or MP19); epithelial membrane protein-1 (EMP-1), which is also known as tumor-associated membrane protein (TMP) or as squamous cell-specific protein Cl-20; epithelial membrane protein-2 (EMP-2), which is also known as XMP; epithelial membrane protein-3 (EMP-3), also known as YMP; and peripheral myelin protein 22 (PMP-22), which is expressed in many tissues but mainly by Schwann cells as a component of myelin of the peripheral nervous system (PNS). PMP-22 probably plays a role both in myelinization and in cell proliferation. Mutations affecting PMP-22 are associated with hereditary motor and sensory neuropathies such as Charcot-Marie-Tooth disease type 1A (CMT-1A) in human or the trembler phenotype in mice. The proteins of this family are about 160 to 173 amino acid residues in size, and contain four transmembrane segments. PMP-22, EMP-1, -2 and -3 are highly similar, while MP20 is more distantly related. This family also includes the claudins, which are components of tight junctions.; GO: 0016020 membrane
Probab=25.53 E-value=2e+02 Score=21.78 Aligned_cols=56 Identities=14% Similarity=0.267 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccccccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 030041 53 GMGVGAFLFLLASQVLIMLASRCFCCGKPLSPGGSRAWAVILFIICWVFFFIAEVCLLAGSVRNAYHTK 121 (184)
Q Consensus 53 ~lGv~A~~~Ll~aqi~~~~~~~C~cc~~~~~~s~~r~~a~~~~v~SWi~f~iA~~~ll~Ga~~n~~~~~ 121 (184)
++-+.+.++..++-++......|..+.+. .+. +-+.+++|.++.+++.+.-..+..
T Consensus 75 ~l~i~s~il~~l~~~l~~~g~~~~~~~~~-----~~~--------ag~l~~~agl~~l~~~~~y~~~~~ 130 (166)
T PF00822_consen 75 ALMILSIILGFLGLILALFGLCCTKRGPR-----PKV--------AGILFILAGLCLLIAVSWYTAVIV 130 (166)
T ss_pred HHhHHHHHHHHHHHHHHHhcccccccCCC-----CCc--------ceeeeHHHhhhhheeEEEEeccCc
Confidence 34466666666665554443333221111 111 455677888888888887665544
No 30
>PF13828 DUF4190: Domain of unknown function (DUF4190)
Probab=24.04 E-value=2.3e+02 Score=19.04 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=16.8
Q ss_pred CChHHHHHHHHHHHHHHHHHH
Q 030041 86 GSRAWAVILFIICWVFFFIAE 106 (184)
Q Consensus 86 ~~r~~a~~~~v~SWi~f~iA~ 106 (184)
+.|..|+.=.+++|+..+++.
T Consensus 40 ~G~g~A~aGivlG~i~~~~~v 60 (62)
T PF13828_consen 40 RGRGMAIAGIVLGYIGIVLAV 60 (62)
T ss_pred CChHHHHHHHHHHHHHHHHHH
Confidence 567888888999998877654
No 31
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.26 E-value=5.3e+02 Score=22.09 Aligned_cols=34 Identities=15% Similarity=0.429 Sum_probs=21.6
Q ss_pred CCcceeecCCCchh-hhHHHHHHHHHHHHHHHHHH
Q 030041 39 KNYNYCIYDSDIST-GMGVGAFLFLLASQVLIMLA 72 (184)
Q Consensus 39 ~~~~~C~Yp~~~A~-~lGv~A~~~Ll~aqi~~~~~ 72 (184)
.....|.|.+|+.. .+|++.-++..++-+.-.+.
T Consensus 54 ~~~~~Ciynrn~~ACsyg~avG~~Afla~~~flvl 88 (233)
T KOG4016|consen 54 SGEEFCIYNRNSNACSYGVAVGVLAFLACLAFLVL 88 (233)
T ss_pred CCceEEEECCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 45678999988754 56666655555555544443
No 32
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.79 E-value=93 Score=23.99 Aligned_cols=24 Identities=8% Similarity=-0.085 Sum_probs=13.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhh
Q 030041 3 SKLLIATVFVFDLIAFGLAVAAEQ 26 (184)
Q Consensus 3 s~~v~~vv~~lgliAfiLg~~AE~ 26 (184)
.++++++.++.|+|.++.=+.-..
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR~ 91 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666665554444333
No 33
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.18 E-value=1.3e+02 Score=22.42 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 030041 8 ATVFVFDLIAFGLAVAAEQRRS 29 (184)
Q Consensus 8 ~vv~~lgliAfiLg~~AE~~r~ 29 (184)
++..+.|++.|++|+..|.=+-
T Consensus 30 ~ilti~aiVg~i~Gf~~Qqls~ 51 (101)
T KOG4112|consen 30 LILTIGAIVGFIYGFAQQQLSV 51 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999987554
Done!