Query 030041
Match_columns 184
No_of_seqs 105 out of 220
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 12:02:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030041.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030041hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nr1_A NR1 M2, M2; receptor, s 6.6 2.6E+02 0.009 15.2 1.6 16 103-118 9-24 (27)
2 1ifp_A PF3 inovirus, major coa 6.6 3.8E+02 0.013 15.7 2.5 18 142-159 22-39 (44)
3 2ks1_B Epidermal growth factor 6.2 5E+02 0.017 15.4 3.0 14 146-159 21-34 (44)
4 2jp3_A FXYD domain-containing 6.1 3.8E+02 0.013 17.7 2.5 17 65-81 31-47 (67)
5 2l2t_A Receptor tyrosine-prote 5.9 5.2E+02 0.018 15.5 2.9 15 145-159 19-33 (44)
6 2z73_A Rhodopsin; visual pigme 5.8 1.1E+03 0.038 19.0 6.3 39 68-106 127-167 (448)
7 1tzs_X 23-MER peptide from PEL 5.6 2.2E+02 0.0076 15.3 0.9 12 56-67 8-19 (26)
8 2lk9_A Bone marrow stromal ant 5.4 3.6E+02 0.012 15.5 1.8 19 4-22 11-29 (35)
9 3vw7_A Proteinase-activated re 5.3 1.2E+03 0.041 18.8 7.6 45 68-112 112-158 (484)
10 3qrx_B Melittin; calcium-bindi 5.3 2.3E+02 0.0077 15.2 0.8 6 95-100 15-20 (26)
No 1
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=6.58 E-value=2.6e+02 Score=15.22 Aligned_cols=16 Identities=13% Similarity=0.092 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhhhccc
Q 030041 103 FIAEVCLLAGSVRNAY 118 (184)
Q Consensus 103 ~iA~~~ll~Ga~~n~~ 118 (184)
.++...|.||...|+.
T Consensus 9 l~aa~wF~WGvllnsg 24 (27)
T 2nr1_A 9 LSSAMWFSWGVLLNSG 24 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhhHHHhhHhheecc
Confidence 3567778888887753
No 2
>1ifp_A PF3 inovirus, major coat protein assembly; virus coat protein, helical virus; 3.10A {Pseudomonas phage PF3} SCOP: h.1.4.1
Probab=6.56 E-value=3.8e+02 Score=15.74 Aligned_cols=18 Identities=17% Similarity=0.288 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 030041 142 AAGAAFVFFTAIVSEFYY 159 (184)
Q Consensus 142 a~aa~l~l~t~~~~i~~Y 159 (184)
.+|++..|.++++++-|.
T Consensus 22 iggaiivlaavvlgirwi 39 (44)
T 1ifp_A 22 IGGAIIVLAAVVLGIRWI 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ecchhHHHHHHHHHhHHh
Confidence 357788888888888764
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=6.18 E-value=5e+02 Score=15.45 Aligned_cols=14 Identities=0% Similarity=0.128 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 030041 146 AFVFFTAIVSEFYY 159 (184)
Q Consensus 146 ~l~l~t~~~~i~~Y 159 (184)
++.++..++.+++|
T Consensus 21 v~~~~ii~~~~~~~ 34 (44)
T 2ks1_B 21 LLLLLVVALGIGLF 34 (44)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 4
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=6.10 E-value=3.8e+02 Score=17.67 Aligned_cols=17 Identities=18% Similarity=0.559 Sum_probs=9.7
Q ss_pred HHHHHHHHhccccccCC
Q 030041 65 SQVLIMLASRCFCCGKP 81 (184)
Q Consensus 65 aqi~~~~~~~C~cc~~~ 81 (184)
.-+++....+|-|+.+.
T Consensus 31 ~GI~iilS~kcrCk~~q 47 (67)
T 2jp3_A 31 AGIALALSGKCKCRRNH 47 (67)
T ss_dssp HHHHHHHTTHHHHHHTC
T ss_pred HHHHHHHcCcccccCCC
Confidence 33444556678776543
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=5.90 E-value=5.2e+02 Score=15.45 Aligned_cols=15 Identities=13% Similarity=0.230 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 030041 145 AAFVFFTAIVSEFYY 159 (184)
Q Consensus 145 a~l~l~t~~~~i~~Y 159 (184)
+++.++..++.+++|
T Consensus 19 Gv~~v~ii~~~~~~~ 33 (44)
T 2l2t_A 19 GLFILVIVGLTFAVY 33 (44)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 6
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=5.81 E-value=1.1e+03 Score=19.00 Aligned_cols=39 Identities=21% Similarity=0.440 Sum_probs=23.6
Q ss_pred HHHHHhccccccCCCCCC--CChHHHHHHHHHHHHHHHHHH
Q 030041 68 LIMLASRCFCCGKPLSPG--GSRAWAVILFIICWVFFFIAE 106 (184)
Q Consensus 68 ~~~~~~~C~cc~~~~~~s--~~r~~a~~~~v~SWi~f~iA~ 106 (184)
++...-+|..-.++.+.. .++..+....++.|+..++-.
T Consensus 127 ~~isidRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~~~ 167 (448)
T 2z73_A 127 AMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWA 167 (448)
T ss_dssp HHHHHHHHHHTTSCTTTCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccccceechhHHHHHHHHHHHHHHHHH
Confidence 445556666666765432 344456777888898765533
No 7
>1tzs_X 23-MER peptide from PELB-IGG kappa light chain fusion protein; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=5.59 E-value=2.2e+02 Score=15.29 Aligned_cols=12 Identities=50% Similarity=0.451 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHH
Q 030041 56 VGAFLFLLASQV 67 (184)
Q Consensus 56 v~A~~~Ll~aqi 67 (184)
++|-++|+++|-
T Consensus 8 iAaGLLLa~sqp 19 (26)
T 1tzs_X 8 AAAGLLLLAAQP 19 (26)
T ss_pred HHHHHHHHhcCh
Confidence 566777777774
No 8
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=5.45 E-value=3.6e+02 Score=15.49 Aligned_cols=19 Identities=5% Similarity=0.235 Sum_probs=9.4
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 030041 4 KLLIATVFVFDLIAFGLAV 22 (184)
Q Consensus 4 ~~v~~vv~~lgliAfiLg~ 22 (184)
+++..++..||+.=-++.+
T Consensus 11 vl~LLviV~LgV~LI~f~~ 29 (35)
T 2lk9_A 11 ILVLLIIVILGVPLIIFTI 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcchheEEee
Confidence 4455555556655444443
No 9
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=5.31 E-value=1.2e+03 Score=18.81 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=26.2
Q ss_pred HHHHHhccccccCCCCCC--CChHHHHHHHHHHHHHHHHHHHHHHHH
Q 030041 68 LIMLASRCFCCGKPLSPG--GSRAWAVILFIICWVFFFIAEVCLLAG 112 (184)
Q Consensus 68 ~~~~~~~C~cc~~~~~~s--~~r~~a~~~~v~SWi~f~iA~~~ll~G 112 (184)
+++..-+|..-++|.+.. .++..+....++.|+..++..+..+.+
T Consensus 112 ~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~ 158 (484)
T 3vw7_A 112 TVISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAIAGVVPLLLK 158 (484)
T ss_dssp HHHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHheEEEcccccccccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555666666775432 344456777788999876655544443
No 10
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=5.29 E-value=2.3e+02 Score=15.18 Aligned_cols=6 Identities=33% Similarity=1.215 Sum_probs=4.0
Q ss_pred HHHHHH
Q 030041 95 FIICWV 100 (184)
Q Consensus 95 ~v~SWi 100 (184)
-++|||
T Consensus 15 ~liSWi 20 (26)
T 3qrx_B 15 ALISWI 20 (26)
T ss_pred HHHHHH
Confidence 367776
Done!