Query 030041
Match_columns 184
No_of_seqs 105 out of 220
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 12:02:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030041.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/030041hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2p7tc1 f.14.1.1 (C:86-119) Po 40.9 18 0.0013 19.2 3.5 22 6-27 6-27 (34)
2 d1eysh2 f.23.10.1 (H:7-43) Pho 16.1 71 0.0051 17.4 3.0 17 154-170 18-34 (37)
3 d2pila_ d.24.1.1 (A:) Pilin Gc 10.9 72 0.0052 20.4 2.5 17 6-22 6-22 (158)
4 d1fasa_ g.7.1.1 (A:) Fasciculi 5.9 1.1E+02 0.0082 18.3 1.4 8 133-140 41-48 (61)
5 d1ntxa_ g.7.1.1 (A:) alpha-Tox 5.5 83 0.0061 18.9 0.6 8 133-140 41-48 (60)
6 d1v7pb_ d.169.1.1 (B:) Snake c 3.9 1.3E+02 0.0092 18.8 0.6 11 41-51 117-127 (127)
7 d1x63a1 g.39.1.3 (A:8-44) Four 3.5 1.8E+02 0.013 15.5 1.0 15 72-86 8-22 (37)
8 d1ebda1 c.3.1.5 (A:7-154,A:272 3.5 1.6E+02 0.012 19.6 1.0 19 129-147 175-193 (223)
9 d2j8cm1 f.26.1.1 (M:1-303) M ( 3.5 3.4E+02 0.024 21.0 3.0 14 43-56 92-105 (303)
10 d1ojta1 c.3.1.5 (A:117-275,A:4 3.4 1.7E+02 0.012 20.1 1.0 18 129-146 183-200 (229)
No 1
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=40.91 E-value=18 Score=19.21 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 030041 6 LIATVFVFDLIAFGLAVAAEQR 27 (184)
Q Consensus 6 v~~vv~~lgliAfiLg~~AE~~ 27 (184)
+.+++.+-|+.+|.|-++|-.+
T Consensus 6 vavvvmvagits~glv~aa~at 27 (34)
T d2p7tc1 6 VAVVVMVAGITSFGLVTAALAT 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeccchhhhHHHHHHH
Confidence 5678888999999999888654
No 2
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=16.06 E-value=71 Score=17.38 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=13.4
Q ss_pred HHHHHHHHHhhcccCCC
Q 030041 154 VSEFYYICYSKARESFQ 170 (184)
Q Consensus 154 ~~i~~Yv~~~~a~~~~~ 170 (184)
.++.+|+-..+.||+++
T Consensus 18 agLi~YL~rE~~REGyP 34 (37)
T d1eysh2 18 FGLIIYLRREDKREGYP 34 (37)
T ss_dssp HHHHHHHHHHTTSSSCS
T ss_pred HHHHHHHHhcccccCCC
Confidence 68889987777887765
No 3
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=10.92 E-value=72 Score=20.38 Aligned_cols=17 Identities=12% Similarity=0.159 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q 030041 6 LIATVFVFDLIAFGLAV 22 (184)
Q Consensus 6 v~~vv~~lgliAfiLg~ 22 (184)
+.+++.++|++|.+.--
T Consensus 6 LlVViaIIgILaaia~P 22 (158)
T d2pila_ 6 LMIVIAIVGILAAVALP 22 (158)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677788888877643
No 4
>d1fasa_ g.7.1.1 (A:) Fasciculin {Green mamba (Dendroaspis angusticeps) [TaxId: 8618]}
Probab=5.86 E-value=1.1e+02 Score=18.32 Aligned_cols=8 Identities=13% Similarity=0.256 Sum_probs=6.2
Q ss_pred ccccccce
Q 030041 133 CQTVRKGV 140 (184)
Q Consensus 133 C~~~k~Gv 140 (184)
|+.+|+|+
T Consensus 41 CP~vkp~i 48 (61)
T d1fasa_ 41 CPPGDDYL 48 (61)
T ss_dssp CCCCCSSE
T ss_pred CCCCCCCc
Confidence 78888775
No 5
>d1ntxa_ g.7.1.1 (A:) alpha-Toxin {Black mamba (Dendroaspis polylepis polylepis) [TaxId: 8620]}
Probab=5.51 E-value=83 Score=18.89 Aligned_cols=8 Identities=50% Similarity=1.120 Sum_probs=6.4
Q ss_pred ccccccce
Q 030041 133 CQTVRKGV 140 (184)
Q Consensus 133 C~~~k~Gv 140 (184)
|+.+|+|+
T Consensus 41 CP~vkpgi 48 (60)
T d1ntxa_ 41 CPKVKPGV 48 (60)
T ss_dssp CCCCCTTS
T ss_pred CCCCCCCc
Confidence 78888876
No 6
>d1v7pb_ d.169.1.1 (B:) Snake coagglutinin beta chain {Snake (Echis multisquamatus), Ems16 [TaxId: 93050]}
Probab=3.85 E-value=1.3e+02 Score=18.83 Aligned_cols=11 Identities=18% Similarity=0.277 Sum_probs=7.6
Q ss_pred cceeecCCCch
Q 030041 41 YNYCIYDSDIS 51 (184)
Q Consensus 41 ~~~C~Yp~~~A 51 (184)
...|+++.|||
T Consensus 117 ~fiCe~~~~Pa 127 (127)
T d1v7pb_ 117 SFVCKFLTDPA 127 (127)
T ss_dssp EEEEEEECCCC
T ss_pred EEEEEEcCCCC
Confidence 45677777775
No 7
>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.53 E-value=1.8e+02 Score=15.53 Aligned_cols=15 Identities=27% Similarity=0.645 Sum_probs=11.0
Q ss_pred HhccccccCCCCCCC
Q 030041 72 ASRCFCCGKPLSPGG 86 (184)
Q Consensus 72 ~~~C~cc~~~~~~s~ 86 (184)
+++|-.|.++..|+.
T Consensus 8 a~~C~~C~k~I~~G~ 22 (37)
T d1x63a1 8 SPKCKGCFKAIVAGD 22 (37)
T ss_dssp SCBCSSSCCBCCSSS
T ss_pred CcccccCCCccCCCC
Confidence 467888888876663
No 8
>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=3.51 E-value=1.6e+02 Score=19.64 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=15.4
Q ss_pred CCCcccccccceehhhHHH
Q 030041 129 NPPSCQTVRKGVFAAGAAF 147 (184)
Q Consensus 129 ~~~~C~~~k~GvFa~aa~l 147 (184)
-|..+.|-.+|||++|=+-
T Consensus 175 vd~~~~T~~~gvyA~GDv~ 193 (223)
T d1ebda1 175 VDQQCRTSVPNIFAIGDIV 193 (223)
T ss_dssp CCTTCBCSSTTEEECGGGS
T ss_pred ECCCCCCCCCCEEEEeccC
Confidence 3567999999999998653
No 9
>d2j8cm1 f.26.1.1 (M:1-303) M (medium) subunit {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.47 E-value=3.4e+02 Score=21.01 Aligned_cols=14 Identities=7% Similarity=0.247 Sum_probs=10.5
Q ss_pred eeecCCCchhhhHH
Q 030041 43 YCIYDSDISTGMGV 56 (184)
Q Consensus 43 ~C~Yp~~~A~~lGv 56 (184)
.-..|.++..+|++
T Consensus 92 lsl~PP~~~yGL~~ 105 (303)
T d2j8cm1 92 FSLEPPAPEYGLSF 105 (303)
T ss_dssp CCBCCCCGGGTTCS
T ss_pred eEeCCCchhcCCCc
Confidence 45678888888875
No 10
>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}
Probab=3.44 E-value=1.7e+02 Score=20.12 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=14.3
Q ss_pred CCCcccccccceehhhHH
Q 030041 129 NPPSCQTVRKGVFAAGAA 146 (184)
Q Consensus 129 ~~~~C~~~k~GvFa~aa~ 146 (184)
-|..+.|-.+|||++|=+
T Consensus 183 vd~~~~TsvpgVyAaGDv 200 (229)
T d1ojta1 183 VDKQMRTNVPHIYAIGDI 200 (229)
T ss_dssp CCTTSBCSSTTEEECGGG
T ss_pred cCCCccCCCCCEEEEEec
Confidence 356789999999999843
Done!