BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030042
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo
Complexed With Fad
Length = 407
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 6/149 (4%)
Query: 25 KRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG 84
K+ G++ V E ++ GAAIS PN + LG+ + + P+ R++ + +G
Sbjct: 43 KQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRSG 102
Query: 85 A--TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPV 142
TQ + GS P + R +L + + D ++ F ++ ++ + + V
Sbjct: 103 ENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGKRV----TRCEEDADGV 158
Query: 143 FIHLVDGTIVKTKFLIGCDGIHSTVAWWL 171
+ DG+ LI DG HS + W+
Sbjct: 159 TVWFTDGSSASGDLLIAADGSHSALRPWV 187
>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad
pdb|3RP7|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad And Uric Acid
Length = 407
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 61/149 (40%), Gaps = 6/149 (4%)
Query: 25 KRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG 84
K+ G++ V E ++ GAAIS PN LG + P+ R + + +G
Sbjct: 43 KQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCXAHLGXGDIXETFGGPLRRXAYRDFRSG 102
Query: 85 --ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPV 142
TQ + GS P + R +L + D ++ F ++ ++ + + V
Sbjct: 103 ENXTQFSLAPLIERTGSRPCPVSRAELQREXLDYWGRDSVQFGKRV----TRCEEDADGV 158
Query: 143 FIHLVDGTIVKTKFLIGCDGIHSTVAWWL 171
+ DG+ LI DG HS + W+
Sbjct: 159 TVWFTDGSSASGDLLIAADGSHSALRPWV 187
>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase
Phzs From Pseudomonas Aeruginosa. Northeast Structural
Genomics Consortium Target Par240
Length = 410
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 14/144 (9%)
Query: 33 VLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGATQETSLT 92
+LE S +R G I+ P A AL LG+ LA+ P + + + +GAT +
Sbjct: 33 LLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQ-SGATVWSEPR 91
Query: 93 GKFGDGSGPRF-IHRKKL----LQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV 147
G + P++ IHR +L L + + L + + I+ + DG V I
Sbjct: 92 GVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEER--DGR--VLIGAR 147
Query: 148 DG----TIVKTKFLIGCDGIHSTV 167
DG + L+G DGIHS V
Sbjct: 148 DGHGKPQALGADVLVGADGIHSAV 171
>pdb|2RGJ|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase Phzs
Length = 402
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 14/144 (9%)
Query: 33 VLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGATQETSLT 92
+LE S +R G I+ P A AL LG+ LA+ P + + + +GAT +
Sbjct: 33 LLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQ-SGATVWSEPR 91
Query: 93 GKFGDGSGPRF-IHRKKL----LQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV 147
G + P++ IHR +L L + + L + + I+ + DG V I
Sbjct: 92 GVEAGNAYPQYSIHRGELQXILLAAVRERLGQQAVRTGLGVERIEER--DGR--VLIGAR 147
Query: 148 DG----TIVKTKFLIGCDGIHSTV 167
DG + L+G DGIHS V
Sbjct: 148 DGHGKPQALGADVLVGADGIHSAV 171
>pdb|3S4C|A Chain A, Lactose Phosphorylase In Complex With Sulfate
pdb|3S4D|A Chain A, Lactose Phosphorylase In A Ternary Complex With Cellobiose
And Sulfate
Length = 822
Score = 27.3 bits (59), Expect = 5.6, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 69 IYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFI 104
I P V +VT + GAT E ++T DGS R +
Sbjct: 761 IGPDVPSFTVTRVARGATYEITVTNSGTDGSRGRLV 796
>pdb|3RRS|A Chain A, Crystal Structure Analysis Of Cellobiose Phosphorylase
From Cellulomonas Uda
pdb|3RRS|B Chain B, Crystal Structure Analysis Of Cellobiose Phosphorylase
From Cellulomonas Uda
pdb|3RSY|A Chain A, Cellobiose Phosphorylase From Cellulomonas Uda In Complex
With Sulfate And Glycerol
pdb|3RSY|B Chain B, Cellobiose Phosphorylase From Cellulomonas Uda In Complex
With Sulfate And Glycerol
pdb|3S4A|A Chain A, Cellobiose Phosphorylase From Cellulomonas Uda In Complex
With Cellobiose
pdb|3S4A|B Chain B, Cellobiose Phosphorylase From Cellulomonas Uda In Complex
With Cellobiose
pdb|3S4B|A Chain A, Cellobiose Phosphorylase From Cellulomonas Uda In Complex
With Glucose
pdb|3S4B|B Chain B, Cellobiose Phosphorylase From Cellulomonas Uda In Complex
With Glucose
Length = 822
Score = 27.3 bits (59), Expect = 5.6, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 69 IYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFI 104
I P V +VT + GAT E ++T DGS R +
Sbjct: 761 IGPDVPSFTVTRVARGATYEITVTNSGTDGSRGRLV 796
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,271,820
Number of Sequences: 62578
Number of extensions: 210857
Number of successful extensions: 400
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 393
Number of HSP's gapped (non-prelim): 10
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)