Query 030042
Match_columns 184
No_of_seqs 123 out of 1051
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 07:37:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030042.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030042hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07190 hypothetical protein; 99.9 2.5E-26 5.4E-31 175.0 18.5 174 1-178 1-178 (487)
2 PRK06617 2-octaprenyl-6-methox 99.9 5.9E-26 1.3E-30 168.6 18.8 162 6-175 2-170 (374)
3 PRK08013 oxidoreductase; Provi 99.9 7.7E-26 1.7E-30 169.3 19.0 167 3-176 1-179 (400)
4 PRK06753 hypothetical protein; 99.9 7.5E-26 1.6E-30 168.1 18.8 168 7-182 2-170 (373)
5 PRK06184 hypothetical protein; 99.9 8.5E-26 1.8E-30 173.5 18.8 170 4-178 2-181 (502)
6 COG0654 UbiH 2-polyprenyl-6-me 99.9 1.5E-25 3.3E-30 167.0 19.5 163 5-172 2-169 (387)
7 PRK06183 mhpA 3-(3-hydroxyphen 99.9 1.2E-25 2.5E-30 173.9 19.3 170 3-176 8-185 (538)
8 PRK08163 salicylate hydroxylas 99.9 1.9E-25 4.1E-30 167.2 19.3 175 1-181 1-182 (396)
9 PRK07588 hypothetical protein; 99.9 1.6E-25 3.5E-30 167.3 18.9 162 6-171 1-164 (391)
10 PRK06475 salicylate hydroxylas 99.9 2.1E-25 4.5E-30 167.1 18.5 174 6-183 3-185 (400)
11 PRK07045 putative monooxygenas 99.9 3.6E-25 7.8E-30 165.3 19.4 169 1-174 1-175 (388)
12 PRK05868 hypothetical protein; 99.9 6.2E-25 1.3E-29 162.8 20.3 163 6-172 2-167 (372)
13 PRK06847 hypothetical protein; 99.9 2.8E-25 6E-30 165.2 18.2 177 1-182 1-182 (375)
14 PRK08773 2-octaprenyl-3-methyl 99.9 4E-25 8.7E-30 165.2 19.0 172 1-177 1-181 (392)
15 PRK07494 2-octaprenyl-6-methox 99.9 3.5E-25 7.5E-30 165.4 18.0 170 1-175 3-177 (388)
16 PRK06185 hypothetical protein; 99.9 2.9E-25 6.3E-30 166.7 17.6 174 3-179 4-183 (407)
17 PRK07333 2-octaprenyl-6-methox 99.9 6E-25 1.3E-29 164.9 19.0 167 5-175 1-177 (403)
18 TIGR01989 COQ6 Ubiquinone bios 99.9 1.2E-24 2.5E-29 164.6 18.7 170 6-178 1-196 (437)
19 PRK05714 2-octaprenyl-3-methyl 99.9 8.8E-25 1.9E-29 164.0 17.9 166 5-176 2-179 (405)
20 PRK08244 hypothetical protein; 99.9 1E-24 2.3E-29 167.2 18.5 164 5-176 2-170 (493)
21 PRK08294 phenol 2-monooxygenas 99.9 2E-24 4.4E-29 168.9 20.1 173 4-177 31-222 (634)
22 PF01494 FAD_binding_3: FAD bi 99.9 1.6E-25 3.5E-30 165.1 13.2 167 5-176 1-183 (356)
23 PRK07364 2-octaprenyl-6-methox 99.9 1.9E-24 4E-29 162.8 18.9 167 4-176 17-192 (415)
24 PRK07236 hypothetical protein; 99.9 1.7E-24 3.7E-29 161.5 18.4 167 3-182 4-172 (386)
25 PRK08849 2-octaprenyl-3-methyl 99.9 3E-24 6.5E-29 160.0 18.7 167 4-176 2-178 (384)
26 PRK08850 2-octaprenyl-6-methox 99.9 1.9E-24 4.2E-29 162.1 17.7 167 4-176 3-179 (405)
27 PRK06834 hypothetical protein; 99.9 2.5E-24 5.5E-29 164.2 18.3 165 5-179 3-170 (488)
28 PRK07538 hypothetical protein; 99.9 6.2E-24 1.4E-28 159.7 20.0 171 7-181 2-183 (413)
29 PRK06126 hypothetical protein; 99.9 4.4E-24 9.5E-29 165.6 19.0 172 1-176 3-199 (545)
30 PRK09126 hypothetical protein; 99.9 2.7E-24 5.8E-29 160.8 17.2 167 3-175 1-177 (392)
31 TIGR01988 Ubi-OHases Ubiquinon 99.9 5E-24 1.1E-28 159.0 18.3 164 7-176 1-174 (385)
32 TIGR01984 UbiH 2-polyprenyl-6- 99.9 5.8E-24 1.3E-28 158.5 18.4 164 7-176 1-173 (382)
33 PRK08020 ubiF 2-octaprenyl-3-m 99.9 1E-23 2.2E-28 157.6 18.5 168 1-175 1-179 (391)
34 TIGR03219 salicylate_mono sali 99.9 1.9E-23 4E-28 157.2 19.2 171 7-183 2-183 (414)
35 PRK05732 2-octaprenyl-6-methox 99.9 1.6E-23 3.5E-28 156.7 18.6 169 3-176 1-180 (395)
36 PRK08132 FAD-dependent oxidore 99.9 2.7E-23 5.9E-28 161.1 19.3 168 4-176 22-196 (547)
37 KOG2614 Kynurenine 3-monooxyge 99.9 6.9E-24 1.5E-28 152.7 14.8 173 5-184 2-182 (420)
38 PRK08243 4-hydroxybenzoate 3-m 99.9 3.8E-23 8.3E-28 154.5 17.6 164 5-174 2-172 (392)
39 PRK07608 ubiquinone biosynthes 99.9 6.9E-23 1.5E-27 153.0 18.7 165 4-176 4-178 (388)
40 TIGR02360 pbenz_hydroxyl 4-hyd 99.9 4E-22 8.6E-27 148.8 18.8 164 5-174 2-172 (390)
41 PRK10157 putative oxidoreducta 99.9 1.8E-22 3.8E-27 152.2 16.6 168 1-179 1-178 (428)
42 PRK06996 hypothetical protein; 99.9 8.8E-22 1.9E-26 147.5 18.5 167 1-175 7-185 (398)
43 PLN02927 antheraxanthin epoxid 99.9 1.8E-21 3.9E-26 151.2 19.4 176 4-183 80-267 (668)
44 PTZ00367 squalene epoxidase; P 99.9 1E-21 2.3E-26 151.3 17.4 167 4-177 32-231 (567)
45 PLN02985 squalene monooxygenas 99.9 9.5E-22 2.1E-26 150.6 16.6 168 4-176 42-219 (514)
46 PRK10015 oxidoreductase; Provi 99.9 9.9E-22 2.1E-26 148.0 16.5 168 1-175 1-174 (429)
47 PLN00093 geranylgeranyl diphos 99.9 5.3E-21 1.1E-25 144.5 17.6 163 1-174 35-208 (450)
48 PRK11445 putative oxidoreducta 99.9 5.9E-21 1.3E-25 140.7 15.6 156 5-174 1-166 (351)
49 COG0644 FixC Dehydrogenases (f 99.9 8.5E-21 1.9E-25 141.9 16.2 157 4-174 2-161 (396)
50 TIGR02032 GG-red-SF geranylger 99.9 1.7E-20 3.7E-25 135.2 16.4 155 6-175 1-158 (295)
51 TIGR02023 BchP-ChlP geranylger 99.9 5.9E-20 1.3E-24 137.2 16.4 154 6-175 1-165 (388)
52 TIGR02028 ChlP geranylgeranyl 99.8 3.1E-19 6.7E-24 133.6 17.7 158 6-174 1-169 (398)
53 COG2081 Predicted flavoprotein 99.8 1E-19 2.2E-24 131.2 12.5 163 3-175 1-188 (408)
54 COG0579 Predicted dehydrogenas 99.8 1.5E-18 3.3E-23 128.3 12.7 170 3-175 1-222 (429)
55 PRK04176 ribulose-1,5-biphosph 99.8 2.6E-18 5.7E-23 121.0 11.4 136 4-171 24-179 (257)
56 TIGR00292 thiazole biosynthesi 99.8 1.6E-17 3.6E-22 116.6 14.0 136 4-170 20-175 (254)
57 PLN02463 lycopene beta cyclase 99.8 5E-17 1.1E-21 122.6 14.5 144 5-169 28-173 (447)
58 KOG1298 Squalene monooxygenase 99.7 6.2E-17 1.3E-21 116.0 11.7 167 4-173 44-216 (509)
59 PF03486 HI0933_like: HI0933-l 99.7 3.5E-18 7.5E-23 127.2 5.2 139 6-165 1-166 (409)
60 PRK11259 solA N-methyltryptoph 99.7 6.6E-17 1.4E-21 120.5 11.8 158 4-166 2-205 (376)
61 TIGR01377 soxA_mon sarcosine o 99.7 9.1E-17 2E-21 119.9 12.0 169 6-179 1-215 (380)
62 PRK11728 hydroxyglutarate oxid 99.7 3.4E-16 7.4E-21 117.3 14.3 165 5-174 2-214 (393)
63 PLN02697 lycopene epsilon cycl 99.7 7.6E-16 1.6E-20 118.1 16.2 141 4-166 107-249 (529)
64 PF01266 DAO: FAD dependent ox 99.7 2.9E-17 6.2E-22 121.3 8.3 167 7-178 1-217 (358)
65 PF05834 Lycopene_cycl: Lycope 99.7 5.4E-16 1.2E-20 115.3 14.2 139 7-166 1-143 (374)
66 PRK08255 salicylyl-CoA 5-hydro 99.7 7.2E-17 1.6E-21 129.3 10.0 140 7-171 2-147 (765)
67 KOG2820 FAD-dependent oxidored 99.7 3.9E-16 8.5E-21 110.2 12.3 175 4-179 6-228 (399)
68 PRK11101 glpA sn-glycerol-3-ph 99.7 1.6E-16 3.4E-21 123.2 11.4 174 2-179 3-226 (546)
69 PF13738 Pyr_redox_3: Pyridine 99.7 1.7E-17 3.7E-22 113.6 4.8 136 9-166 1-139 (203)
70 COG1635 THI4 Ribulose 1,5-bisp 99.7 7.9E-16 1.7E-20 102.7 12.1 132 5-167 30-180 (262)
71 PF04820 Trp_halogenase: Trypt 99.7 1.9E-16 4.1E-21 120.0 9.9 160 7-170 1-216 (454)
72 PTZ00383 malate:quinone oxidor 99.7 4.7E-16 1E-20 118.6 12.0 68 102-173 206-282 (497)
73 TIGR01790 carotene-cycl lycope 99.7 2.1E-15 4.5E-20 112.9 14.9 142 7-168 1-144 (388)
74 PRK05257 malate:quinone oxidor 99.7 2.1E-15 4.6E-20 115.3 14.8 72 100-174 176-256 (494)
75 PF01946 Thi4: Thi4 family; PD 99.7 8.4E-16 1.8E-20 102.9 10.6 132 4-166 16-166 (230)
76 PRK12266 glpD glycerol-3-phosp 99.7 1.2E-15 2.7E-20 117.4 12.4 169 1-173 1-226 (508)
77 TIGR01373 soxB sarcosine oxida 99.7 1.6E-15 3.5E-20 114.2 11.9 75 102-179 178-255 (407)
78 PLN02172 flavin-containing mon 99.6 2.2E-15 4.8E-20 114.4 10.8 152 5-165 10-173 (461)
79 PRK12409 D-amino acid dehydrog 99.6 7.4E-15 1.6E-19 110.7 13.6 71 103-177 193-271 (410)
80 COG2072 TrkA Predicted flavopr 99.6 8.5E-15 1.9E-19 110.7 13.7 136 3-166 6-145 (443)
81 PRK01747 mnmC bifunctional tRN 99.6 4.5E-15 9.7E-20 117.8 12.4 157 6-166 261-464 (662)
82 PRK05192 tRNA uridine 5-carbox 99.6 5.1E-15 1.1E-19 114.1 11.9 147 3-165 2-157 (618)
83 PRK13369 glycerol-3-phosphate 99.6 9.4E-15 2E-19 112.6 13.3 167 4-174 5-226 (502)
84 PRK13339 malate:quinone oxidor 99.6 7.2E-15 1.6E-19 111.9 12.1 72 100-174 177-257 (497)
85 TIGR01320 mal_quin_oxido malat 99.6 1.1E-14 2.5E-19 111.2 13.1 72 100-174 171-250 (483)
86 KOG3855 Monooxygenase involved 99.6 4.4E-14 9.6E-19 102.3 14.8 172 4-179 35-231 (481)
87 KOG1399 Flavin-containing mono 99.6 7E-15 1.5E-19 110.2 10.6 136 4-165 5-153 (448)
88 TIGR03329 Phn_aa_oxid putative 99.6 8.8E-15 1.9E-19 111.7 11.1 67 100-172 176-245 (460)
89 PF00743 FMO-like: Flavin-bind 99.6 6.9E-15 1.5E-19 113.2 8.8 142 6-166 2-151 (531)
90 PF12831 FAD_oxidored: FAD dep 99.6 5.6E-16 1.2E-20 117.0 2.7 150 7-174 1-158 (428)
91 COG0578 GlpA Glycerol-3-phosph 99.6 7E-14 1.5E-18 106.0 12.7 169 2-174 9-235 (532)
92 TIGR01789 lycopene_cycl lycope 99.6 9.9E-14 2.1E-18 103.0 13.1 135 7-165 1-138 (370)
93 PRK00711 D-amino acid dehydrog 99.6 4.9E-14 1.1E-18 106.5 10.6 73 103-179 197-272 (416)
94 COG0492 TrxB Thioredoxin reduc 99.5 1.6E-13 3.4E-18 98.7 12.4 113 3-166 1-116 (305)
95 PLN02464 glycerol-3-phosphate 99.5 1.2E-13 2.6E-18 108.7 12.5 70 102-172 227-304 (627)
96 TIGR03364 HpnW_proposed FAD de 99.5 8E-14 1.7E-18 103.6 11.0 152 6-166 1-198 (365)
97 TIGR01292 TRX_reduct thioredox 99.5 2.2E-13 4.7E-18 98.6 12.4 110 6-165 1-112 (300)
98 PRK06481 fumarate reductase fl 99.5 3.4E-13 7.3E-18 104.0 13.6 39 4-42 60-98 (506)
99 COG0665 DadA Glycine/D-amino a 99.5 1.2E-13 2.6E-18 103.3 10.0 68 100-172 149-220 (387)
100 PF01134 GIDA: Glucose inhibit 99.5 1E-13 2.2E-18 101.8 8.4 140 7-163 1-150 (392)
101 PF06039 Mqo: Malate:quinone o 99.5 4.5E-13 9.8E-18 99.1 11.5 70 103-175 177-255 (488)
102 PRK08274 tricarballylate dehyd 99.5 4.1E-13 9E-18 102.8 11.6 36 4-39 3-38 (466)
103 PRK15317 alkyl hydroperoxide r 99.5 8.3E-13 1.8E-17 102.2 12.8 110 5-165 211-322 (517)
104 TIGR00275 flavoprotein, HI0933 99.5 1.8E-13 3.9E-18 102.7 8.8 156 9-174 1-180 (400)
105 PLN02661 Putative thiazole syn 99.5 7.4E-13 1.6E-17 96.1 11.5 129 4-165 91-244 (357)
106 KOG2415 Electron transfer flav 99.5 1.5E-12 3.3E-17 94.9 12.9 167 4-180 75-275 (621)
107 KOG2853 Possible oxidoreductas 99.5 1.7E-12 3.6E-17 92.5 12.3 168 5-174 86-330 (509)
108 PRK06452 sdhA succinate dehydr 99.5 1.9E-12 4.1E-17 101.1 13.9 41 1-41 1-41 (566)
109 TIGR03143 AhpF_homolog putativ 99.5 1.5E-12 3.3E-17 101.4 13.2 113 1-166 1-115 (555)
110 PRK06069 sdhA succinate dehydr 99.5 1.6E-12 3.4E-17 101.9 13.1 42 1-42 1-45 (577)
111 PRK05945 sdhA succinate dehydr 99.5 1.1E-12 2.4E-17 102.6 12.2 39 3-41 1-41 (575)
112 PRK06175 L-aspartate oxidase; 99.5 1.9E-12 4.1E-17 98.1 12.9 40 1-42 1-40 (433)
113 PRK05249 soluble pyridine nucl 99.5 1.5E-12 3.3E-17 99.6 12.5 44 1-44 1-44 (461)
114 PRK07573 sdhA succinate dehydr 99.5 2E-12 4.3E-17 102.1 13.3 37 4-40 34-70 (640)
115 TIGR01813 flavo_cyto_c flavocy 99.5 1E-12 2.2E-17 99.9 11.3 36 7-42 1-37 (439)
116 PRK07121 hypothetical protein; 99.4 4.7E-12 1E-16 97.6 14.4 40 4-43 19-58 (492)
117 TIGR03140 AhpF alkyl hydropero 99.4 2.2E-12 4.8E-17 99.8 12.7 111 4-165 211-323 (515)
118 PRK07804 L-aspartate oxidase; 99.4 5.2E-12 1.1E-16 98.2 13.6 38 4-41 15-52 (541)
119 TIGR01812 sdhA_frdA_Gneg succi 99.4 3.6E-12 7.9E-17 99.8 12.5 34 7-40 1-34 (566)
120 PF00890 FAD_binding_2: FAD bi 99.4 2E-12 4.3E-17 97.8 10.6 36 7-42 1-36 (417)
121 COG3380 Predicted NAD/FAD-depe 99.4 2E-12 4.3E-17 89.3 9.0 140 6-164 2-159 (331)
122 PRK07803 sdhA succinate dehydr 99.4 5.9E-12 1.3E-16 99.3 12.9 38 3-40 6-43 (626)
123 PF13454 NAD_binding_9: FAD-NA 99.4 7.2E-12 1.6E-16 82.2 11.0 41 119-163 114-155 (156)
124 PRK09231 fumarate reductase fl 99.4 7.3E-12 1.6E-16 98.1 12.6 38 4-41 3-42 (582)
125 PRK12834 putative FAD-binding 99.4 6E-12 1.3E-16 98.1 12.0 37 1-38 1-37 (549)
126 PRK06416 dihydrolipoamide dehy 99.4 6.7E-12 1.5E-16 96.1 12.0 39 4-43 3-41 (462)
127 PRK08205 sdhA succinate dehydr 99.4 1.2E-11 2.5E-16 97.1 13.5 40 1-41 1-40 (583)
128 TIGR00551 nadB L-aspartate oxi 99.4 9.7E-12 2.1E-16 95.7 12.7 152 5-167 2-191 (488)
129 PRK08071 L-aspartate oxidase; 99.4 1.2E-11 2.7E-16 95.5 13.2 152 4-166 2-191 (510)
130 PRK07057 sdhA succinate dehydr 99.4 2.4E-11 5.3E-16 95.3 15.0 37 3-39 10-46 (591)
131 PRK08626 fumarate reductase fl 99.4 4.3E-12 9.3E-17 100.4 10.8 41 1-41 1-41 (657)
132 PRK06263 sdhA succinate dehydr 99.4 1.1E-11 2.4E-16 96.6 12.7 35 4-39 6-40 (543)
133 TIGR00136 gidA glucose-inhibit 99.4 5.8E-12 1.3E-16 97.3 10.9 145 6-165 1-154 (617)
134 PRK08401 L-aspartate oxidase; 99.4 1.1E-11 2.5E-16 94.8 12.5 34 6-39 2-35 (466)
135 PTZ00139 Succinate dehydrogena 99.4 9.1E-12 2E-16 98.1 12.1 38 4-41 28-65 (617)
136 PRK07843 3-ketosteroid-delta-1 99.4 3.6E-11 7.9E-16 93.8 14.8 42 1-42 3-44 (557)
137 TIGR01176 fum_red_Fp fumarate 99.4 1.7E-11 3.7E-16 95.9 12.9 155 4-167 2-197 (580)
138 PRK09078 sdhA succinate dehydr 99.4 1.6E-11 3.4E-16 96.5 12.6 37 4-40 11-47 (598)
139 PRK06467 dihydrolipoamide dehy 99.4 2E-12 4.4E-17 99.0 7.5 43 1-44 1-43 (471)
140 PRK08010 pyridine nucleotide-d 99.4 4.3E-12 9.3E-17 96.6 9.0 36 4-39 2-37 (441)
141 PRK14694 putative mercuric red 99.4 1.5E-12 3.2E-17 99.8 6.5 42 1-43 2-43 (468)
142 PRK06854 adenylylsulfate reduc 99.4 3.8E-12 8.2E-17 100.1 8.8 36 5-40 11-48 (608)
143 TIGR02730 carot_isom carotene 99.3 2E-11 4.2E-16 94.3 12.1 63 107-172 229-293 (493)
144 PLN02815 L-aspartate oxidase 99.3 1.6E-11 3.4E-16 96.1 11.7 38 4-42 28-65 (594)
145 PRK08641 sdhA succinate dehydr 99.3 4.1E-11 8.9E-16 94.0 13.6 38 4-41 2-39 (589)
146 PRK08958 sdhA succinate dehydr 99.3 4.5E-11 9.9E-16 93.7 13.8 157 4-167 6-208 (588)
147 PRK10262 thioredoxin reductase 99.3 4.1E-11 8.9E-16 87.7 12.7 112 3-165 4-117 (321)
148 PRK08275 putative oxidoreducta 99.3 2E-11 4.4E-16 95.3 11.6 37 4-40 8-46 (554)
149 PRK06370 mercuric reductase; V 99.3 1.7E-11 3.6E-16 93.9 10.9 37 1-37 1-37 (463)
150 PRK06115 dihydrolipoamide dehy 99.3 4.7E-12 1E-16 96.9 7.6 41 4-44 2-42 (466)
151 TIGR01424 gluta_reduc_2 glutat 99.3 4.5E-12 9.7E-17 96.6 7.4 38 5-43 2-39 (446)
152 PLN00128 Succinate dehydrogena 99.3 2.6E-11 5.5E-16 95.7 11.7 37 5-41 50-86 (635)
153 PRK05976 dihydrolipoamide dehy 99.3 9.9E-12 2.2E-16 95.4 9.0 42 1-44 1-42 (472)
154 PRK12845 3-ketosteroid-delta-1 99.3 6.8E-11 1.5E-15 92.2 13.5 39 4-43 15-53 (564)
155 TIGR00562 proto_IX_ox protopor 99.3 1E-10 2.2E-15 89.7 13.6 61 6-66 3-82 (462)
156 PRK06134 putative FAD-binding 99.3 6.8E-11 1.5E-15 92.8 12.6 39 4-42 11-49 (581)
157 PRK09897 hypothetical protein; 99.3 2.8E-11 6.1E-16 93.3 10.1 146 6-164 2-165 (534)
158 PTZ00306 NADH-dependent fumara 99.3 8.9E-11 1.9E-15 98.3 13.7 40 4-43 408-447 (1167)
159 PRK07395 L-aspartate oxidase; 99.3 4.7E-11 1E-15 93.0 11.3 38 4-42 8-45 (553)
160 PLN02507 glutathione reductase 99.3 1.9E-11 4.1E-16 94.2 8.2 32 5-36 25-56 (499)
161 PRK06116 glutathione reductase 99.3 1.5E-11 3.2E-16 93.9 7.5 41 1-43 1-41 (450)
162 TIGR01421 gluta_reduc_1 glutat 99.3 1.3E-11 2.9E-16 94.0 7.2 39 4-43 1-39 (450)
163 PLN02568 polyamine oxidase 99.3 3.1E-10 6.6E-15 88.1 14.6 53 107-163 242-294 (539)
164 PRK12839 hypothetical protein; 99.3 3.3E-10 7.3E-15 88.6 14.9 39 4-42 7-45 (572)
165 PRK07251 pyridine nucleotide-d 99.3 3.2E-11 7E-16 91.8 8.9 37 3-39 1-37 (438)
166 PRK07512 L-aspartate oxidase; 99.3 6.4E-11 1.4E-15 91.6 10.6 34 4-39 8-41 (513)
167 COG1232 HemY Protoporphyrinoge 99.3 3.9E-10 8.5E-15 84.7 14.4 61 7-67 2-79 (444)
168 PRK06327 dihydrolipoamide dehy 99.3 2.7E-11 5.8E-16 93.1 8.4 35 1-36 1-35 (475)
169 PRK12844 3-ketosteroid-delta-1 99.2 2.6E-10 5.6E-15 89.1 13.5 40 4-43 5-44 (557)
170 TIGR01350 lipoamide_DH dihydro 99.2 2.2E-11 4.8E-16 93.3 7.4 39 5-44 1-39 (461)
171 PRK09077 L-aspartate oxidase; 99.2 1.6E-10 3.4E-15 90.0 12.1 38 4-42 7-44 (536)
172 PRK12842 putative succinate de 99.2 4E-10 8.8E-15 88.4 14.5 40 4-43 8-47 (574)
173 TIGR02734 crtI_fam phytoene de 99.2 1.3E-10 2.9E-15 89.9 11.7 63 107-172 219-283 (502)
174 PRK13748 putative mercuric red 99.2 1.4E-10 3.1E-15 90.9 11.9 39 4-43 97-135 (561)
175 KOG2844 Dimethylglycine dehydr 99.2 6.1E-11 1.3E-15 91.1 9.3 81 99-183 179-262 (856)
176 PRK12835 3-ketosteroid-delta-1 99.2 2.3E-10 5E-15 89.8 12.5 39 4-42 10-48 (584)
177 PRK12837 3-ketosteroid-delta-1 99.2 9.9E-11 2.1E-15 90.7 10.1 38 4-42 6-43 (513)
178 TIGR01811 sdhA_Bsu succinate d 99.2 2E-10 4.3E-15 90.4 11.8 33 8-40 1-33 (603)
179 PRK06292 dihydrolipoamide dehy 99.2 2.6E-10 5.7E-15 87.4 11.8 40 3-43 1-40 (460)
180 PRK11883 protoporphyrinogen ox 99.2 1.6E-09 3.6E-14 82.8 15.9 37 7-43 2-40 (451)
181 COG1249 Lpd Pyruvate/2-oxoglut 99.2 2.6E-11 5.6E-16 91.6 5.9 45 4-48 3-47 (454)
182 PRK12416 protoporphyrinogen ox 99.2 5.8E-10 1.3E-14 85.5 13.3 58 109-171 228-285 (463)
183 TIGR02485 CobZ_N-term precorri 99.2 1.8E-10 4E-15 87.5 10.4 62 107-169 123-187 (432)
184 COG1231 Monoamine oxidase [Ami 99.2 1.2E-09 2.7E-14 80.8 13.7 41 3-43 5-45 (450)
185 PLN02268 probable polyamine ox 99.2 7.9E-10 1.7E-14 84.2 12.5 38 6-43 1-38 (435)
186 PRK12843 putative FAD-binding 99.2 1.5E-09 3.3E-14 85.2 14.2 40 4-43 15-54 (578)
187 PF07992 Pyr_redox_2: Pyridine 99.2 3.7E-11 8.1E-16 82.0 4.6 32 7-38 1-32 (201)
188 COG1053 SdhA Succinate dehydro 99.2 2.4E-10 5.3E-15 88.6 9.5 41 1-41 2-42 (562)
189 PRK13800 putative oxidoreducta 99.2 9.3E-10 2E-14 90.3 13.3 36 4-39 12-47 (897)
190 PRK07233 hypothetical protein; 99.2 3.9E-10 8.5E-15 85.7 10.3 38 7-44 1-38 (434)
191 PRK07818 dihydrolipoamide dehy 99.2 1.9E-10 4.1E-15 88.2 8.5 39 4-43 3-41 (466)
192 KOG2665 Predicted FAD-dependen 99.1 8.7E-10 1.9E-14 78.1 10.8 171 4-174 47-267 (453)
193 PRK09754 phenylpropionate diox 99.1 9.7E-10 2.1E-14 82.7 12.0 109 4-165 2-112 (396)
194 PF13450 NAD_binding_8: NAD(P) 99.1 1.1E-10 2.4E-15 65.3 5.2 36 10-45 1-36 (68)
195 PF13434 K_oxygenase: L-lysine 99.1 5.1E-10 1.1E-14 82.2 10.1 154 5-171 2-165 (341)
196 PRK14727 putative mercuric red 99.1 1E-09 2.2E-14 84.5 12.1 41 4-44 15-55 (479)
197 PLN02676 polyamine oxidase 99.1 3.3E-09 7.1E-14 81.7 14.5 55 106-164 223-285 (487)
198 PTZ00058 glutathione reductase 99.1 1.1E-09 2.4E-14 85.3 11.9 39 4-43 47-85 (561)
199 KOG2404 Fumarate reductase, fl 99.1 6.7E-10 1.5E-14 78.9 9.5 39 6-44 10-48 (477)
200 PRK12779 putative bifunctional 99.1 2.8E-10 6.1E-15 93.2 8.7 39 5-43 306-344 (944)
201 PLN02546 glutathione reductase 99.1 2E-10 4.3E-15 89.4 7.2 33 4-36 78-110 (558)
202 TIGR01372 soxA sarcosine oxida 99.1 1.1E-09 2.4E-14 90.7 11.7 38 5-42 163-200 (985)
203 PF00070 Pyr_redox: Pyridine n 99.1 1.5E-09 3.2E-14 63.0 8.9 80 7-149 1-80 (80)
204 COG4529 Uncharacterized protei 99.1 4.1E-10 8.8E-15 84.0 7.4 149 5-168 1-167 (474)
205 PRK09564 coenzyme A disulfide 99.1 6.9E-10 1.5E-14 84.7 8.7 34 7-40 2-37 (444)
206 KOG0042 Glycerol-3-phosphate d 99.1 2.8E-10 6.2E-15 85.6 6.2 45 3-47 65-110 (680)
207 TIGR02053 MerA mercuric reduct 99.1 4.3E-10 9.3E-15 86.3 6.7 37 6-43 1-37 (463)
208 PRK13977 myosin-cross-reactive 99.0 2E-08 4.3E-13 77.6 14.8 40 5-44 22-65 (576)
209 PTZ00052 thioredoxin reductase 99.0 9.5E-10 2.1E-14 85.0 7.7 33 5-37 5-37 (499)
210 COG1233 Phytoene dehydrogenase 99.0 4.4E-10 9.4E-15 86.5 5.7 54 107-163 224-279 (487)
211 COG3634 AhpF Alkyl hydroperoxi 99.0 8.1E-10 1.8E-14 79.2 6.2 110 5-163 211-323 (520)
212 PRK04965 NADH:flavorubredoxin 99.0 8E-09 1.7E-13 77.3 11.8 107 6-174 142-250 (377)
213 TIGR02061 aprA adenosine phosp 99.0 5.3E-10 1.1E-14 87.8 5.7 34 7-40 1-38 (614)
214 PRK12831 putative oxidoreducta 99.0 7.3E-10 1.6E-14 84.8 6.3 38 5-42 140-177 (464)
215 PRK09853 putative selenate red 99.0 2.5E-09 5.4E-14 87.4 9.3 38 5-42 539-576 (1019)
216 PRK07845 flavoprotein disulfid 99.0 6.4E-09 1.4E-13 79.9 11.0 33 6-38 2-34 (466)
217 PRK13512 coenzyme A disulfide 99.0 7.9E-09 1.7E-13 78.8 11.4 111 7-166 3-118 (438)
218 PRK04965 NADH:flavorubredoxin 99.0 3.7E-09 8E-14 79.1 9.4 104 6-166 3-112 (377)
219 COG2509 Uncharacterized FAD-de 99.0 4.9E-09 1.1E-13 77.6 9.5 58 106-166 172-231 (486)
220 PRK05335 tRNA (uracil-5-)-meth 99.0 5.3E-09 1.2E-13 78.1 9.8 111 6-131 3-125 (436)
221 PTZ00153 lipoamide dehydrogena 99.0 1.1E-08 2.3E-13 81.1 12.0 41 4-44 115-156 (659)
222 PRK09754 phenylpropionate diox 99.0 1.6E-08 3.4E-13 76.2 11.9 105 6-173 145-251 (396)
223 TIGR03315 Se_ygfK putative sel 99.0 3.5E-09 7.6E-14 86.8 8.8 38 5-42 537-574 (1012)
224 PRK14989 nitrite reductase sub 99.0 2.6E-09 5.6E-14 86.9 8.1 108 5-166 3-114 (847)
225 COG0445 GidA Flavin-dependent 99.0 5.2E-10 1.1E-14 84.4 3.7 141 4-164 3-157 (621)
226 PRK06912 acoL dihydrolipoamide 99.0 3.5E-09 7.5E-14 81.2 8.2 32 7-38 2-33 (458)
227 KOG1335 Dihydrolipoamide dehyd 98.9 3.8E-09 8.3E-14 76.7 7.5 41 4-44 38-78 (506)
228 TIGR03378 glycerol3P_GlpB glyc 98.9 2.4E-08 5.1E-13 74.7 12.0 67 109-178 265-338 (419)
229 TIGR01438 TGR thioredoxin and 98.9 6.5E-09 1.4E-13 80.1 9.1 33 5-37 2-34 (484)
230 TIGR02374 nitri_red_nirB nitri 98.9 3.9E-09 8.5E-14 85.6 8.2 106 8-166 1-109 (785)
231 PTZ00318 NADH dehydrogenase-li 98.9 1.7E-08 3.7E-13 76.7 11.0 36 4-39 9-44 (424)
232 TIGR03197 MnmC_Cterm tRNA U-34 98.9 9.2E-09 2E-13 77.1 9.4 62 101-166 129-191 (381)
233 TIGR00137 gid_trmFO tRNA:m(5)U 98.9 2.3E-08 4.9E-13 75.1 11.3 35 6-40 1-35 (433)
234 TIGR01423 trypano_reduc trypan 98.9 2.8E-09 6E-14 82.0 6.5 34 4-37 2-36 (486)
235 TIGR03169 Nterm_to_SelD pyridi 98.9 3.9E-09 8.5E-14 78.6 6.9 101 7-166 1-108 (364)
236 PRK12778 putative bifunctional 98.9 3.8E-09 8.2E-14 85.5 6.8 37 5-41 431-467 (752)
237 KOG0404 Thioredoxin reductase 98.9 1.8E-08 3.8E-13 68.3 8.8 116 5-166 8-125 (322)
238 COG0029 NadB Aspartate oxidase 98.9 2.1E-08 4.6E-13 75.1 9.9 148 7-167 9-198 (518)
239 PRK07208 hypothetical protein; 98.9 3.2E-09 6.9E-14 81.9 5.8 40 4-43 3-42 (479)
240 PRK07846 mycothione reductase; 98.9 1.2E-08 2.7E-13 78.0 8.6 36 5-43 1-36 (451)
241 KOG0029 Amine oxidase [Seconda 98.9 3.3E-09 7.3E-14 81.3 5.4 41 3-43 13-53 (501)
242 TIGR01350 lipoamide_DH dihydro 98.9 5E-08 1.1E-12 74.9 11.8 99 6-167 171-271 (461)
243 PRK05249 soluble pyridine nucl 98.9 5.1E-08 1.1E-12 74.9 11.8 98 6-166 176-273 (461)
244 TIGR03452 mycothione_red mycot 98.9 5E-08 1.1E-12 74.7 11.4 37 4-43 1-37 (452)
245 PRK12775 putative trifunctiona 98.9 5.9E-09 1.3E-13 86.3 6.7 37 5-41 430-466 (1006)
246 PRK06416 dihydrolipoamide dehy 98.8 6.6E-08 1.4E-12 74.3 11.5 98 6-166 173-273 (462)
247 PRK11749 dihydropyrimidine deh 98.8 7.2E-09 1.6E-13 79.4 6.2 37 5-41 140-176 (457)
248 PRK07846 mycothione reductase; 98.8 7.5E-08 1.6E-12 73.7 11.7 97 6-166 167-263 (451)
249 COG1249 Lpd Pyruvate/2-oxoglut 98.8 9E-08 1.9E-12 72.7 11.7 98 6-166 174-273 (454)
250 COG3486 IucD Lysine/ornithine 98.8 1.1E-08 2.4E-13 74.9 6.2 152 1-168 1-160 (436)
251 PRK06116 glutathione reductase 98.8 1.1E-07 2.5E-12 72.8 11.4 99 6-166 168-266 (450)
252 PLN02576 protoporphyrinogen ox 98.8 1.2E-08 2.6E-13 79.0 5.9 40 4-43 11-51 (496)
253 TIGR02374 nitri_red_nirB nitri 98.8 1.4E-07 3.1E-12 76.7 11.5 106 6-173 141-248 (785)
254 PRK07251 pyridine nucleotide-d 98.8 2E-07 4.3E-12 71.2 11.7 97 6-166 158-254 (438)
255 PRK12770 putative glutamate sy 98.8 3.6E-08 7.9E-13 73.1 7.4 37 5-41 18-54 (352)
256 TIGR01424 gluta_reduc_2 glutat 98.8 1.9E-07 4.2E-12 71.4 11.5 98 6-166 167-264 (446)
257 TIGR03452 mycothione_red mycot 98.8 2.3E-07 4.9E-12 71.1 11.8 97 6-166 170-266 (452)
258 COG1252 Ndh NADH dehydrogenase 98.7 9.9E-08 2.1E-12 71.0 9.3 106 4-166 2-112 (405)
259 TIGR03385 CoA_CoA_reduc CoA-di 98.7 1.5E-07 3.3E-12 71.6 10.7 96 6-165 138-233 (427)
260 COG2907 Predicted NAD/FAD-bind 98.7 9.7E-08 2.1E-12 68.8 8.9 39 5-44 8-46 (447)
261 TIGR02731 phytoene_desat phyto 98.7 2.8E-08 6E-13 76.2 6.7 59 7-65 1-75 (453)
262 KOG2311 NAD/FAD-utilizing prot 98.7 3.1E-08 6.7E-13 74.0 6.6 144 4-164 27-185 (679)
263 PLN02507 glutathione reductase 98.7 2.2E-07 4.8E-12 72.0 11.5 98 6-166 204-301 (499)
264 TIGR02733 desat_CrtD C-3',4' d 98.7 1.8E-08 3.9E-13 78.0 5.6 38 6-43 2-39 (492)
265 PRK05976 dihydrolipoamide dehy 98.7 3E-07 6.4E-12 70.9 11.9 101 6-167 181-283 (472)
266 TIGR01421 gluta_reduc_1 glutat 98.7 2.7E-07 5.8E-12 70.7 11.5 99 6-166 167-266 (450)
267 KOG0685 Flavin-containing amin 98.7 1.8E-07 3.8E-12 69.9 10.0 38 5-42 21-59 (498)
268 PRK07818 dihydrolipoamide dehy 98.7 3E-07 6.5E-12 70.8 11.8 98 6-166 173-274 (466)
269 PRK07845 flavoprotein disulfid 98.7 2.6E-07 5.6E-12 71.1 11.4 98 6-166 178-275 (466)
270 TIGR02053 MerA mercuric reduct 98.7 3.1E-07 6.6E-12 70.7 11.8 98 6-166 167-267 (463)
271 TIGR00031 UDP-GALP_mutase UDP- 98.7 2.2E-08 4.7E-13 74.4 5.2 37 6-42 2-38 (377)
272 KOG2852 Possible oxidoreductas 98.7 1.3E-07 2.7E-12 66.5 8.4 155 6-166 11-209 (380)
273 PRK06912 acoL dihydrolipoamide 98.7 3.9E-07 8.5E-12 70.0 11.8 99 6-167 171-270 (458)
274 COG3573 Predicted oxidoreducta 98.7 7.2E-07 1.6E-11 64.3 12.1 39 1-39 1-39 (552)
275 PTZ00363 rab-GDP dissociation 98.7 1.9E-08 4.2E-13 76.3 4.4 44 4-47 3-46 (443)
276 PRK06370 mercuric reductase; V 98.7 4.7E-07 1E-11 69.7 11.9 98 6-166 172-272 (463)
277 PRK14989 nitrite reductase sub 98.7 3.4E-07 7.3E-12 74.9 11.2 109 6-174 146-256 (847)
278 PRK06327 dihydrolipoamide dehy 98.7 5.2E-07 1.1E-11 69.6 11.7 98 6-166 184-285 (475)
279 TIGR03377 glycerol3P_GlpA glyc 98.7 2.4E-07 5.1E-12 72.2 9.7 75 102-179 123-205 (516)
280 PRK06115 dihydrolipoamide dehy 98.7 6.2E-07 1.3E-11 69.0 11.7 98 6-166 175-277 (466)
281 TIGR02732 zeta_caro_desat caro 98.6 7E-08 1.5E-12 74.3 6.4 60 7-66 1-76 (474)
282 COG3349 Uncharacterized conser 98.6 4.6E-08 1E-12 73.8 5.1 40 7-46 2-41 (485)
283 PRK14727 putative mercuric red 98.6 5.8E-07 1.3E-11 69.4 11.3 96 6-166 189-284 (479)
284 PRK14694 putative mercuric red 98.6 5.3E-07 1.2E-11 69.5 11.1 96 6-166 179-274 (468)
285 PTZ00052 thioredoxin reductase 98.6 5.4E-07 1.2E-11 69.9 11.0 97 6-166 183-279 (499)
286 PRK08010 pyridine nucleotide-d 98.6 6.7E-07 1.5E-11 68.4 11.3 97 6-166 159-255 (441)
287 PRK09564 coenzyme A disulfide 98.6 5.6E-07 1.2E-11 68.9 10.5 105 6-173 150-256 (444)
288 PRK12771 putative glutamate sy 98.6 1.2E-07 2.6E-12 74.6 6.8 36 6-41 138-173 (564)
289 COG0562 Glf UDP-galactopyranos 98.6 6.9E-08 1.5E-12 68.7 4.9 39 5-43 1-39 (374)
290 TIGR01423 trypano_reduc trypan 98.6 8.6E-07 1.9E-11 68.5 11.3 99 6-166 188-289 (486)
291 PRK13512 coenzyme A disulfide 98.6 7.2E-07 1.6E-11 68.2 10.8 93 6-165 149-241 (438)
292 PF00732 GMC_oxred_N: GMC oxid 98.6 5.3E-08 1.2E-12 70.5 4.3 34 6-39 1-35 (296)
293 COG0446 HcaD Uncharacterized N 98.6 7.7E-07 1.7E-11 67.2 10.5 99 6-165 137-237 (415)
294 PRK02106 choline dehydrogenase 98.6 7E-08 1.5E-12 75.8 4.9 38 1-38 1-39 (560)
295 PLN02612 phytoene desaturase 98.6 1.9E-07 4.1E-12 73.4 7.0 61 5-65 93-169 (567)
296 PRK06467 dihydrolipoamide dehy 98.6 1.8E-06 3.9E-11 66.6 12.2 97 6-167 175-276 (471)
297 PRK13748 putative mercuric red 98.6 1E-06 2.2E-11 69.4 11.0 96 6-166 271-366 (561)
298 PLN02487 zeta-carotene desatur 98.6 2E-07 4.3E-12 72.9 6.6 61 6-66 76-152 (569)
299 KOG3851 Sulfide:quinone oxidor 98.5 3.6E-08 7.8E-13 70.2 2.1 36 4-39 38-75 (446)
300 TIGR01438 TGR thioredoxin and 98.5 1.5E-06 3.3E-11 67.2 11.1 97 6-166 181-280 (484)
301 PTZ00058 glutathione reductase 98.5 2E-06 4.4E-11 67.4 11.6 99 6-166 238-337 (561)
302 COG1148 HdrA Heterodisulfide r 98.5 1.9E-07 4E-12 70.1 4.8 38 5-42 124-161 (622)
303 TIGR01316 gltA glutamate synth 98.5 2.6E-07 5.7E-12 70.7 5.7 38 5-42 133-170 (449)
304 COG3075 GlpB Anaerobic glycero 98.5 2.6E-07 5.7E-12 66.1 4.6 34 5-38 2-35 (421)
305 PLN02852 ferredoxin-NADP+ redu 98.5 3E-07 6.5E-12 70.6 5.2 39 5-43 26-66 (491)
306 PTZ00318 NADH dehydrogenase-li 98.5 2.5E-06 5.4E-11 65.0 10.1 100 7-173 175-289 (424)
307 PRK12769 putative oxidoreducta 98.4 2.9E-07 6.2E-12 73.7 5.1 38 5-42 327-364 (654)
308 PRK05329 anaerobic glycerol-3- 98.4 3.2E-07 7E-12 69.3 4.9 34 5-38 2-35 (422)
309 COG1252 Ndh NADH dehydrogenase 98.4 8.3E-07 1.8E-11 66.2 6.9 51 110-170 216-268 (405)
310 PRK06292 dihydrolipoamide dehy 98.4 7.2E-06 1.6E-10 63.2 12.1 97 6-166 170-269 (460)
311 PRK10262 thioredoxin reductase 98.4 8.1E-06 1.8E-10 59.9 11.8 96 6-165 147-248 (321)
312 PLN02546 glutathione reductase 98.4 4.8E-06 1E-10 65.4 10.9 99 6-166 253-351 (558)
313 TIGR03140 AhpF alkyl hydropero 98.4 5.9E-06 1.3E-10 64.5 11.0 93 6-165 353-450 (515)
314 PLN02529 lysine-specific histo 98.4 5.9E-07 1.3E-11 72.0 5.5 39 4-42 159-197 (738)
315 PRK12810 gltD glutamate syntha 98.4 7.1E-07 1.5E-11 68.8 5.7 38 5-42 143-180 (471)
316 PLN02328 lysine-specific histo 98.4 6.3E-07 1.4E-11 72.3 5.6 38 5-42 238-275 (808)
317 TIGR02462 pyranose_ox pyranose 98.4 6.5E-07 1.4E-11 69.6 5.1 38 6-43 1-38 (544)
318 KOG4716 Thioredoxin reductase 98.4 6.5E-06 1.4E-10 59.5 9.6 33 4-36 18-50 (503)
319 KOG4254 Phytoene desaturase [C 98.3 4.2E-06 9E-11 62.5 8.6 62 107-171 264-327 (561)
320 KOG0405 Pyridine nucleotide-di 98.3 1.7E-06 3.7E-11 62.5 6.2 40 4-43 19-58 (478)
321 TIGR01292 TRX_reduct thioredox 98.3 1.5E-05 3.3E-10 57.7 11.3 92 6-165 142-238 (300)
322 KOG1336 Monodehydroascorbate/f 98.3 4.1E-06 8.9E-11 62.8 8.3 39 119-163 141-179 (478)
323 PTZ00188 adrenodoxin reductase 98.3 1.1E-06 2.4E-11 67.1 5.4 40 5-44 39-79 (506)
324 KOG3923 D-aspartate oxidase [A 98.3 1E-06 2.2E-11 62.2 4.7 40 4-43 2-48 (342)
325 KOG1336 Monodehydroascorbate/f 98.3 9.5E-06 2.1E-10 60.9 9.9 101 6-166 214-314 (478)
326 PF06100 Strep_67kDa_ant: Stre 98.3 1E-05 2.2E-10 61.5 10.0 38 5-42 2-43 (500)
327 PTZ00153 lipoamide dehydrogena 98.3 1.3E-05 2.9E-10 63.9 11.2 34 6-39 313-346 (659)
328 PRK12814 putative NADPH-depend 98.3 1.3E-06 2.8E-11 69.9 5.5 38 5-42 193-230 (652)
329 PRK06567 putative bifunctional 98.3 7.9E-07 1.7E-11 72.7 4.3 32 6-37 384-415 (1028)
330 TIGR01318 gltD_gamma_fam gluta 98.3 1.4E-06 3E-11 67.1 5.2 38 5-42 141-178 (467)
331 TIGR03862 flavo_PP4765 unchara 98.3 7.7E-06 1.7E-10 60.9 8.9 67 103-175 82-162 (376)
332 KOG1276 Protoporphyrinogen oxi 98.3 1.3E-06 2.9E-11 64.6 4.8 64 5-68 11-95 (491)
333 PRK15317 alkyl hydroperoxide r 98.3 2.3E-05 5.1E-10 61.2 11.5 93 6-165 352-449 (517)
334 PRK12809 putative oxidoreducta 98.2 1.9E-06 4E-11 68.9 5.2 38 5-42 310-347 (639)
335 COG2303 BetA Choline dehydroge 98.2 2E-06 4.3E-11 67.3 4.5 35 4-38 6-40 (542)
336 KOG2960 Protein involved in th 98.2 6.1E-06 1.3E-10 55.8 5.7 39 5-43 76-116 (328)
337 PLN03000 amine oxidase 98.2 3.9E-06 8.4E-11 68.2 5.5 38 5-42 184-221 (881)
338 TIGR01316 gltA glutamate synth 98.1 4.5E-05 9.8E-10 58.6 10.9 33 6-38 273-305 (449)
339 COG0493 GltD NADPH-dependent g 98.1 2.4E-06 5.3E-11 65.1 3.9 37 6-42 124-160 (457)
340 TIGR01317 GOGAT_sm_gam glutama 98.1 4.1E-06 8.9E-11 64.8 5.0 36 6-41 144-179 (485)
341 TIGR01810 betA choline dehydro 98.1 3E-06 6.5E-11 66.4 4.0 32 7-38 1-33 (532)
342 PRK12770 putative glutamate sy 98.1 6.4E-05 1.4E-09 56.0 10.5 32 6-37 173-205 (352)
343 PLN02976 amine oxidase 98.1 6.2E-06 1.3E-10 69.9 5.5 38 5-42 693-730 (1713)
344 PLN02785 Protein HOTHEAD 98.1 5.1E-06 1.1E-10 65.6 4.8 35 4-39 54-88 (587)
345 PF13434 K_oxygenase: L-lysine 98.1 3.2E-05 7E-10 57.2 8.8 133 5-164 190-340 (341)
346 TIGR03169 Nterm_to_SelD pyridi 98.1 6.3E-05 1.4E-09 56.2 10.1 48 108-165 196-243 (364)
347 PRK11749 dihydropyrimidine deh 98.0 9.2E-05 2E-09 57.1 10.3 33 6-38 274-307 (457)
348 PRK13984 putative oxidoreducta 98.0 1.1E-05 2.3E-10 64.3 5.3 38 5-42 283-320 (604)
349 TIGR02352 thiamin_ThiO glycine 98.0 2.7E-05 5.8E-10 57.4 6.3 62 101-166 131-194 (337)
350 PRK12831 putative oxidoreducta 97.9 0.00022 4.9E-09 55.1 10.9 33 6-38 282-314 (464)
351 KOG1335 Dihydrolipoamide dehyd 97.9 0.00011 2.4E-09 54.2 8.2 99 6-166 212-315 (506)
352 TIGR03143 AhpF_homolog putativ 97.9 0.00032 6.9E-09 55.5 11.5 33 6-38 144-176 (555)
353 KOG0399 Glutamate synthase [Am 97.9 1.7E-05 3.6E-10 65.6 4.2 37 6-42 1786-1822(2142)
354 KOG1800 Ferredoxin/adrenodoxin 97.8 3E-05 6.6E-10 56.9 4.4 39 5-43 20-60 (468)
355 TIGR01372 soxA sarcosine oxida 97.8 0.00052 1.1E-08 57.8 12.1 99 6-173 318-421 (985)
356 PF00996 GDI: GDP dissociation 97.8 3.4E-05 7.3E-10 58.6 4.7 48 1-49 1-48 (438)
357 COG1206 Gid NAD(FAD)-utilizing 97.8 3.2E-05 6.9E-10 55.8 3.7 37 4-40 2-38 (439)
358 PRK05675 sdhA succinate dehydr 97.7 0.00049 1.1E-08 54.6 10.5 59 107-167 126-191 (570)
359 COG1251 NirB NAD(P)H-nitrite r 97.7 0.00045 9.9E-09 55.0 9.4 44 119-168 73-116 (793)
360 PRK12778 putative bifunctional 97.7 0.00062 1.3E-08 55.8 10.6 33 6-38 571-604 (752)
361 KOG1238 Glucose dehydrogenase/ 97.7 5.5E-05 1.2E-09 59.1 4.1 37 4-40 56-93 (623)
362 COG1251 NirB NAD(P)H-nitrite r 97.6 0.0005 1.1E-08 54.7 8.9 107 7-175 147-255 (793)
363 KOG2755 Oxidoreductase [Genera 97.6 6E-05 1.3E-09 52.7 3.3 32 8-39 2-35 (334)
364 PRK12810 gltD glutamate syntha 97.6 0.0015 3.2E-08 50.8 11.2 32 6-37 282-314 (471)
365 KOG1346 Programmed cell death 97.6 0.00023 5.1E-09 53.1 6.3 63 108-174 394-460 (659)
366 KOG1346 Programmed cell death 97.6 0.00022 4.8E-09 53.3 5.8 125 5-166 178-312 (659)
367 PRK07819 3-hydroxybutyryl-CoA 97.5 0.00015 3.2E-09 52.4 4.6 39 1-39 1-39 (286)
368 PRK12779 putative bifunctional 97.5 0.0021 4.6E-08 53.8 11.3 33 6-38 448-480 (944)
369 PRK12814 putative NADPH-depend 97.5 0.0018 3.8E-08 52.3 10.5 33 6-38 324-357 (652)
370 PRK12769 putative oxidoreducta 97.5 0.0023 4.9E-08 51.8 10.8 33 6-38 469-502 (654)
371 PRK09853 putative selenate red 97.4 0.0028 6.2E-08 53.1 11.2 33 6-38 669-703 (1019)
372 PRK06249 2-dehydropantoate 2-r 97.4 0.0003 6.5E-09 51.6 5.2 38 1-38 1-38 (313)
373 KOG2495 NADH-dehydrogenase (ub 97.4 0.00087 1.9E-08 50.2 7.4 53 107-165 273-329 (491)
374 PF02737 3HCDH_N: 3-hydroxyacy 97.4 0.0002 4.3E-09 48.1 3.8 33 7-39 1-33 (180)
375 PF01210 NAD_Gly3P_dh_N: NAD-d 97.4 0.00019 4.1E-09 47.1 3.6 32 7-38 1-32 (157)
376 TIGR01318 gltD_gamma_fam gluta 97.4 0.0028 6.2E-08 49.1 10.4 33 6-38 283-316 (467)
377 PLN02172 flavin-containing mon 97.4 0.0011 2.4E-08 51.2 7.6 33 6-38 205-237 (461)
378 PF00743 FMO-like: Flavin-bind 97.4 0.00093 2E-08 52.4 7.2 34 5-38 183-216 (531)
379 COG0446 HcaD Uncharacterized N 97.3 0.0019 4.1E-08 48.9 8.5 41 119-166 67-107 (415)
380 KOG2495 NADH-dehydrogenase (ub 97.3 0.0034 7.4E-08 47.2 9.2 36 4-39 54-89 (491)
381 PF02558 ApbA: Ketopantoate re 97.3 0.00049 1.1E-08 44.7 4.5 31 8-38 1-31 (151)
382 PRK14106 murD UDP-N-acetylmura 97.3 0.00047 1E-08 53.1 5.0 38 1-38 1-38 (450)
383 COG0569 TrkA K+ transport syst 97.2 0.00066 1.4E-08 47.3 4.4 33 7-39 2-34 (225)
384 PF00899 ThiF: ThiF family; I 97.2 0.00062 1.3E-08 43.5 3.9 34 5-38 2-36 (135)
385 PRK01438 murD UDP-N-acetylmura 97.2 0.00063 1.4E-08 52.9 4.6 33 6-38 17-49 (480)
386 PRK06129 3-hydroxyacyl-CoA deh 97.2 0.00062 1.4E-08 49.8 4.2 33 7-39 4-36 (308)
387 PRK05808 3-hydroxybutyryl-CoA 97.1 0.0009 2E-08 48.3 4.7 37 1-39 1-37 (282)
388 PRK08293 3-hydroxybutyryl-CoA 97.1 0.00093 2E-08 48.4 4.6 33 6-38 4-36 (287)
389 PRK07530 3-hydroxybutyryl-CoA 97.1 0.00091 2E-08 48.6 4.6 34 5-38 4-37 (292)
390 PRK02705 murD UDP-N-acetylmura 97.1 0.00072 1.6E-08 52.2 4.2 34 7-40 2-35 (459)
391 PRK05708 2-dehydropantoate 2-r 97.1 0.0011 2.4E-08 48.5 4.9 32 7-38 4-35 (305)
392 TIGR03315 Se_ygfK putative sel 97.1 0.01 2.2E-07 50.0 10.8 33 6-38 667-701 (1012)
393 PF01593 Amino_oxidase: Flavin 97.0 0.0011 2.4E-08 50.3 4.7 44 119-166 223-266 (450)
394 TIGR02354 thiF_fam2 thiamine b 97.0 0.0012 2.7E-08 45.1 4.4 34 4-37 20-54 (200)
395 PF03721 UDPG_MGDP_dh_N: UDP-g 97.0 0.00071 1.5E-08 45.7 3.1 33 7-39 2-34 (185)
396 PTZ00082 L-lactate dehydrogena 97.0 0.0018 4E-08 47.6 5.3 39 1-39 1-41 (321)
397 PRK05329 anaerobic glycerol-3- 97.0 0.0043 9.3E-08 47.4 7.2 44 119-165 273-318 (422)
398 COG0492 TrxB Thioredoxin reduc 97.0 0.035 7.7E-07 40.6 11.6 95 5-166 143-239 (305)
399 PRK06035 3-hydroxyacyl-CoA deh 96.9 0.0015 3.3E-08 47.4 4.5 34 6-39 4-37 (291)
400 PRK12775 putative trifunctiona 96.9 0.016 3.5E-07 49.2 10.8 32 6-37 572-604 (1006)
401 PRK09260 3-hydroxybutyryl-CoA 96.9 0.0015 3.2E-08 47.4 4.3 33 7-39 3-35 (288)
402 PRK07066 3-hydroxybutyryl-CoA 96.9 0.0017 3.7E-08 47.6 4.6 34 6-39 8-41 (321)
403 PRK06130 3-hydroxybutyryl-CoA 96.9 0.0019 4.1E-08 47.3 4.8 37 1-38 1-37 (311)
404 PRK15116 sulfur acceptor prote 96.9 0.002 4.4E-08 45.9 4.6 35 4-38 29-64 (268)
405 PRK11064 wecC UDP-N-acetyl-D-m 96.9 0.0017 3.7E-08 49.5 4.3 37 1-39 1-37 (415)
406 PF13241 NAD_binding_7: Putati 96.9 0.0014 3E-08 39.8 3.2 34 4-37 6-39 (103)
407 PRK13984 putative oxidoreducta 96.8 0.017 3.7E-07 46.4 10.0 23 6-28 419-441 (604)
408 PRK07531 bifunctional 3-hydrox 96.8 0.0022 4.8E-08 50.0 4.8 38 1-39 1-38 (495)
409 KOG4405 GDP dissociation inhib 96.8 0.002 4.3E-08 48.2 4.1 47 4-50 7-53 (547)
410 PLN02545 3-hydroxybutyryl-CoA 96.8 0.0025 5.4E-08 46.3 4.6 34 6-39 5-38 (295)
411 TIGR01470 cysG_Nterm siroheme 96.8 0.0026 5.7E-08 43.7 4.4 34 5-38 9-42 (205)
412 PF01488 Shikimate_DH: Shikima 96.8 0.0045 9.8E-08 39.6 5.1 35 4-38 11-46 (135)
413 PRK14618 NAD(P)H-dependent gly 96.8 0.0027 5.8E-08 46.9 4.6 37 1-38 1-37 (328)
414 PRK06522 2-dehydropantoate 2-r 96.8 0.0025 5.3E-08 46.5 4.4 32 7-38 2-33 (304)
415 PF02254 TrkA_N: TrkA-N domain 96.7 0.0029 6.2E-08 39.1 4.1 32 8-39 1-32 (116)
416 PRK08229 2-dehydropantoate 2-r 96.7 0.003 6.4E-08 46.9 4.8 31 7-37 4-34 (341)
417 PRK06719 precorrin-2 dehydroge 96.7 0.0029 6.2E-08 41.6 4.1 32 5-36 13-44 (157)
418 COG5044 MRS6 RAB proteins gera 96.7 0.0038 8.1E-08 46.1 4.9 44 5-48 6-49 (434)
419 PRK12921 2-dehydropantoate 2-r 96.7 0.0029 6.2E-08 46.2 4.5 30 7-36 2-31 (305)
420 PRK06718 precorrin-2 dehydroge 96.7 0.0031 6.7E-08 43.2 4.2 34 4-37 9-42 (202)
421 TIGR02355 moeB molybdopterin s 96.7 0.0034 7.3E-08 44.2 4.5 35 5-39 24-59 (240)
422 PRK08644 thiamine biosynthesis 96.7 0.0037 8E-08 43.2 4.6 35 4-38 27-62 (212)
423 PRK12475 thiamine/molybdopteri 96.7 0.0032 7E-08 46.6 4.5 35 4-38 23-58 (338)
424 TIGR02356 adenyl_thiF thiazole 96.7 0.0038 8.3E-08 42.8 4.5 35 4-38 20-55 (202)
425 PRK05690 molybdopterin biosynt 96.6 0.004 8.7E-08 44.0 4.5 34 5-38 32-66 (245)
426 PRK04308 murD UDP-N-acetylmura 96.6 0.0048 1E-07 47.6 5.3 39 1-39 1-39 (445)
427 cd01487 E1_ThiF_like E1_ThiF_l 96.6 0.0047 1E-07 41.3 4.5 32 7-38 1-33 (174)
428 PRK07688 thiamine/molybdopteri 96.6 0.0045 9.8E-08 45.9 4.7 35 4-38 23-58 (339)
429 PRK08328 hypothetical protein; 96.6 0.0045 9.8E-08 43.4 4.4 35 5-39 27-62 (231)
430 cd00757 ThiF_MoeB_HesA_family 96.5 0.0045 9.8E-08 43.3 4.4 34 5-38 21-55 (228)
431 PRK12809 putative oxidoreducta 96.5 0.039 8.5E-07 44.7 10.2 33 6-38 452-485 (639)
432 PRK08268 3-hydroxy-acyl-CoA de 96.5 0.0048 1E-07 48.3 4.7 35 5-39 7-41 (507)
433 cd01483 E1_enzyme_family Super 96.5 0.0056 1.2E-07 39.5 4.3 33 7-39 1-34 (143)
434 TIGR00518 alaDH alanine dehydr 96.5 0.0047 1E-07 46.4 4.3 34 5-38 167-200 (370)
435 PRK02472 murD UDP-N-acetylmura 96.5 0.0054 1.2E-07 47.3 4.7 38 1-38 1-38 (447)
436 PF13478 XdhC_C: XdhC Rossmann 96.5 0.0041 8.9E-08 39.8 3.4 32 8-39 1-32 (136)
437 PRK04148 hypothetical protein; 96.4 0.0037 8E-08 39.7 3.1 33 6-39 18-50 (134)
438 PF03446 NAD_binding_2: NAD bi 96.4 0.0055 1.2E-07 40.5 4.0 33 6-38 2-34 (163)
439 PRK14620 NAD(P)H-dependent gly 96.4 0.0057 1.2E-07 45.2 4.4 32 7-38 2-33 (326)
440 COG3486 IucD Lysine/ornithine 96.4 0.02 4.3E-07 43.0 7.1 44 119-165 292-340 (436)
441 cd00755 YgdL_like Family of ac 96.4 0.0062 1.3E-07 42.6 4.3 34 5-38 11-45 (231)
442 cd00401 AdoHcyase S-adenosyl-L 96.4 0.0057 1.2E-07 46.5 4.4 34 6-39 203-236 (413)
443 cd01485 E1-1_like Ubiquitin ac 96.4 0.0069 1.5E-07 41.4 4.5 35 5-39 19-54 (198)
444 KOG1439 RAB proteins geranylge 96.4 0.0019 4.1E-08 48.0 1.7 45 4-48 3-47 (440)
445 PF01262 AlaDh_PNT_C: Alanine 96.4 0.0064 1.4E-07 40.4 4.1 34 5-38 20-53 (168)
446 PRK09424 pntA NAD(P) transhydr 96.3 0.0054 1.2E-07 47.8 4.1 34 5-38 165-198 (509)
447 cd01492 Aos1_SUMO Ubiquitin ac 96.3 0.0079 1.7E-07 41.1 4.5 35 4-38 20-55 (197)
448 cd05292 LDH_2 A subgroup of L- 96.3 0.0074 1.6E-07 44.2 4.6 32 7-38 2-35 (308)
449 PF00056 Ldh_1_N: lactate/mala 96.3 0.01 2.2E-07 38.3 4.7 32 7-38 2-36 (141)
450 PRK00094 gpsA NAD(P)H-dependen 96.3 0.0069 1.5E-07 44.6 4.4 32 7-38 3-34 (325)
451 PRK07502 cyclohexadienyl dehyd 96.3 0.007 1.5E-07 44.3 4.3 38 1-38 1-41 (307)
452 PRK08223 hypothetical protein; 96.3 0.0084 1.8E-07 43.2 4.6 35 4-38 26-61 (287)
453 TIGR01763 MalateDH_bact malate 96.3 0.0095 2.1E-07 43.6 4.9 32 7-38 3-35 (305)
454 PRK14619 NAD(P)H-dependent gly 96.2 0.01 2.2E-07 43.5 4.9 35 5-39 4-38 (308)
455 TIGR03026 NDP-sugDHase nucleot 96.2 0.0065 1.4E-07 46.4 4.0 33 7-39 2-34 (411)
456 PRK00066 ldh L-lactate dehydro 96.2 0.012 2.7E-07 43.2 5.2 35 4-38 5-41 (315)
457 COG1748 LYS9 Saccharopine dehy 96.2 0.0096 2.1E-07 44.7 4.5 33 6-38 2-35 (389)
458 TIGR02279 PaaC-3OHAcCoADH 3-hy 96.2 0.0079 1.7E-07 47.1 4.2 34 6-39 6-39 (503)
459 cd01075 NAD_bind_Leu_Phe_Val_D 96.1 0.013 2.9E-07 40.1 4.7 33 5-37 28-60 (200)
460 PLN02240 UDP-glucose 4-epimera 96.1 0.012 2.6E-07 43.7 4.9 37 1-37 1-38 (352)
461 COG1004 Ugd Predicted UDP-gluc 96.1 0.009 1.9E-07 44.6 4.0 33 7-39 2-34 (414)
462 PRK05597 molybdopterin biosynt 96.1 0.011 2.4E-07 44.1 4.6 35 4-38 27-62 (355)
463 PRK12771 putative glutamate sy 96.1 0.13 2.8E-06 41.2 10.7 33 6-38 268-301 (564)
464 PLN02602 lactate dehydrogenase 96.0 0.015 3.2E-07 43.4 5.0 33 6-38 38-72 (350)
465 PRK07417 arogenate dehydrogena 96.0 0.009 2E-07 43.1 3.7 32 7-38 2-33 (279)
466 PRK12549 shikimate 5-dehydroge 96.0 0.011 2.4E-07 42.8 4.2 33 6-38 128-161 (284)
467 PRK06153 hypothetical protein; 96.0 0.0088 1.9E-07 44.8 3.6 34 5-38 176-210 (393)
468 PRK05600 thiamine biosynthesis 96.0 0.014 3E-07 43.9 4.7 35 4-38 40-75 (370)
469 PRK05653 fabG 3-ketoacyl-(acyl 96.0 0.016 3.5E-07 40.5 4.8 39 1-39 1-40 (246)
470 cd05311 NAD_bind_2_malic_enz N 96.0 0.016 3.5E-07 40.5 4.6 34 5-38 25-61 (226)
471 PRK07231 fabG 3-ketoacyl-(acyl 96.0 0.015 3.3E-07 40.9 4.7 38 1-38 1-39 (251)
472 cd01484 E1-2_like Ubiquitin ac 96.0 0.015 3.3E-07 40.7 4.5 33 7-39 1-34 (234)
473 PRK06223 malate dehydrogenase; 96.0 0.016 3.4E-07 42.4 4.8 34 6-39 3-37 (307)
474 TIGR03736 PRTRC_ThiF PRTRC sys 95.9 0.014 3.1E-07 41.1 4.3 35 4-38 10-55 (244)
475 COG1179 Dinucleotide-utilizing 95.9 0.012 2.7E-07 40.9 3.9 34 5-38 30-64 (263)
476 TIGR02964 xanthine_xdhC xanthi 95.9 0.018 4E-07 40.7 4.6 35 5-39 100-134 (246)
477 cd01080 NAD_bind_m-THF_DH_Cycl 95.9 0.021 4.6E-07 37.9 4.6 34 4-37 43-77 (168)
478 PRK10669 putative cation:proto 95.8 0.014 3E-07 46.4 4.3 34 6-39 418-451 (558)
479 COG1250 FadB 3-hydroxyacyl-CoA 95.8 0.016 3.5E-07 42.2 4.3 34 5-38 3-36 (307)
480 PRK08306 dipicolinate synthase 95.8 0.016 3.4E-07 42.2 4.2 34 5-38 152-185 (296)
481 COG1063 Tdh Threonine dehydrog 95.8 0.014 3E-07 43.6 4.0 32 7-38 171-203 (350)
482 PRK11730 fadB multifunctional 95.8 0.013 2.8E-07 48.0 4.1 34 6-39 314-347 (715)
483 PRK08217 fabG 3-ketoacyl-(acyl 95.8 0.023 5E-07 40.0 5.0 38 1-38 1-39 (253)
484 PRK04690 murD UDP-N-acetylmura 95.8 0.015 3.3E-07 45.2 4.2 33 6-38 9-41 (468)
485 TIGR00936 ahcY adenosylhomocys 95.8 0.017 3.8E-07 43.8 4.4 35 5-39 195-229 (406)
486 PRK08762 molybdopterin biosynt 95.8 0.018 3.9E-07 43.5 4.4 35 4-38 134-169 (376)
487 TIGR02437 FadB fatty oxidation 95.7 0.014 3.1E-07 47.7 4.1 34 6-39 314-347 (714)
488 PRK07878 molybdopterin biosynt 95.7 0.018 3.8E-07 43.8 4.4 35 4-38 41-76 (392)
489 PLN02612 phytoene desaturase 95.7 0.052 1.1E-06 43.3 7.2 54 108-163 309-364 (567)
490 cd05291 HicDH_like L-2-hydroxy 95.7 0.019 4.2E-07 42.0 4.5 33 7-39 2-36 (306)
491 PRK08264 short chain dehydroge 95.7 0.026 5.7E-07 39.4 5.0 39 1-39 2-42 (238)
492 cd01339 LDH-like_MDH L-lactate 95.7 0.016 3.5E-07 42.3 4.1 32 8-39 1-33 (300)
493 PTZ00142 6-phosphogluconate de 95.7 0.013 2.8E-07 45.4 3.7 34 6-39 2-35 (470)
494 TIGR02853 spore_dpaA dipicolin 95.7 0.021 4.6E-07 41.4 4.5 34 5-38 151-184 (287)
495 PRK09496 trkA potassium transp 95.7 0.017 3.7E-07 44.6 4.3 32 7-38 2-33 (453)
496 COG1893 ApbA Ketopantoate redu 95.7 0.017 3.7E-07 42.3 4.1 32 7-38 2-33 (307)
497 PRK07326 short chain dehydroge 95.7 0.022 4.7E-07 39.8 4.5 36 3-38 4-40 (237)
498 PRK07411 hypothetical protein; 95.7 0.018 3.8E-07 43.7 4.3 34 5-38 38-72 (390)
499 TIGR00561 pntA NAD(P) transhyd 95.7 0.016 3.5E-07 45.2 4.1 34 5-38 164-197 (511)
500 PRK02006 murD UDP-N-acetylmura 95.7 0.018 4E-07 45.1 4.5 34 5-38 7-40 (498)
No 1
>PRK07190 hypothetical protein; Provisional
Probab=99.95 E-value=2.5e-26 Score=174.98 Aligned_cols=174 Identities=22% Similarity=0.292 Sum_probs=132.5
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEe
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTN 80 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
|+...+||+||||||+|+++|+.|+++|++|+||||.+.+...+++..+.+.+.+.++.+|+++.+.....+......+.
T Consensus 1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~ 80 (487)
T PRK07190 1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWA 80 (487)
T ss_pred CCCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEec
Confidence 88788999999999999999999999999999999998887788999999999999999999999877665555443333
Q ss_pred cCCCceeeee-cCCCC-CCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeE
Q 030042 81 LGTGATQETS-LTGKF-GDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKF 156 (184)
Q Consensus 81 ~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~ 156 (184)
.......... +.... ...+....+....+.+.|.+.+. +++++++++|++++.++ ++ +.+.+.+|++++|++
T Consensus 81 ~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~---~~-v~v~~~~g~~v~a~~ 156 (487)
T PRK07190 81 NGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQ---AG-CLTTLSNGERIQSRY 156 (487)
T ss_pred CCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC---Ce-eEEEECCCcEEEeCE
Confidence 1111000000 11110 11123345566677777776653 89999999999998876 44 666677788999999
Q ss_pred EEecCCcchHHHhhhCCCCCcc
Q 030042 157 LIGCDGIHSTVAWWLGLSEPLN 178 (184)
Q Consensus 157 vI~a~G~~s~~~~~~~~~~~~~ 178 (184)
||+|+|.+|.+|+.+|++.+..
T Consensus 157 vVgADG~~S~vR~~lgi~f~g~ 178 (487)
T PRK07190 157 VIGADGSRSFVRNHFNVPFEII 178 (487)
T ss_pred EEECCCCCHHHHHHcCCCcccc
Confidence 9999999999999999887643
No 2
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.95 E-value=5.9e-26 Score=168.59 Aligned_cols=162 Identities=19% Similarity=0.238 Sum_probs=129.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC----CCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEec
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL----RGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNL 81 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
+||+||||||+|+++|+.|++.|++|+|+|+.+.. ...+++..+.+.+.+.|+.+|+|+.+.....+...+.+++.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN 81 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence 79999999999999999999999999999987432 23478999999999999999999998877777777777664
Q ss_pred CCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEE
Q 030042 82 GTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLI 158 (184)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI 158 (184)
.......+... ......+.+.+..|.+.|.+.+. +++++++++++++...+ +. +.+.+.++ +++||+||
T Consensus 82 ~g~~~~~~~~~---~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~---~~-v~v~~~~~-~~~adlvI 153 (374)
T PRK06617 82 KASEILDLRND---ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHN---DY-SIIKFDDK-QIKCNLLI 153 (374)
T ss_pred CCceEEEecCC---CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcC---Ce-EEEEEcCC-EEeeCEEE
Confidence 43322222221 11123468899999999998774 47889999999998765 44 77777776 89999999
Q ss_pred ecCCcchHHHhhhCCCC
Q 030042 159 GCDGIHSTVAWWLGLSE 175 (184)
Q Consensus 159 ~a~G~~s~~~~~~~~~~ 175 (184)
+|||.+|.+|+.++.+.
T Consensus 154 gADG~~S~vR~~l~~~~ 170 (374)
T PRK06617 154 ICDGANSKVRSHYFANE 170 (374)
T ss_pred EeCCCCchhHHhcCCCc
Confidence 99999999999987665
No 3
>PRK08013 oxidoreductase; Provisional
Probab=99.95 E-value=7.7e-26 Score=169.33 Aligned_cols=167 Identities=20% Similarity=0.219 Sum_probs=130.0
Q ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC------ccceeeecccHHHHHHHcCChHHHHhc-CCCccc
Q 030042 3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG------TGAAISFAPNAWLALDALGVSHKLASI-YPPVNR 75 (184)
Q Consensus 3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 75 (184)
|.++||+||||||+|+++|+.|++.|++|+|+|+.+.+.. ..++..+.+.+.+.|+++|+++.+... ..+...
T Consensus 1 m~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~ 80 (400)
T PRK08013 1 MQSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHG 80 (400)
T ss_pred CCcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccE
Confidence 3469999999999999999999999999999999876432 125667889999999999999998764 456677
Q ss_pred eEEEecCCCceeeeecCCCCCCCC--CCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEecCc
Q 030042 76 ISVTNLGTGATQETSLTGKFGDGS--GPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGT 150 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~ 150 (184)
+.++..... ....+.... .+. ..+.+.+..+.+.|.+.+. +++++++++|++++.++ +. +.+.+.+|+
T Consensus 81 ~~~~~~~~~--~~~~~~~~~-~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~---~~-v~v~~~~g~ 153 (400)
T PRK08013 81 MEVWDKDSF--GRIAFDDQS-MGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGE---NE-AFLTLKDGS 153 (400)
T ss_pred EEEEeCCCC--ceEEEcccc-cCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC---Ce-EEEEEcCCC
Confidence 776654321 122222111 122 2357889999999988763 68999999999998765 44 778888899
Q ss_pred EEEeeEEEecCCcchHHHhhhCCCCC
Q 030042 151 IVKTKFLIGCDGIHSTVAWWLGLSEP 176 (184)
Q Consensus 151 ~~~a~~vI~a~G~~s~~~~~~~~~~~ 176 (184)
+++||+||+|||.+|.+|+.++++.+
T Consensus 154 ~i~a~lvVgADG~~S~vR~~~~~~~~ 179 (400)
T PRK08013 154 MLTARLVVGADGANSWLRNKADIPLT 179 (400)
T ss_pred EEEeeEEEEeCCCCcHHHHHcCCCcc
Confidence 99999999999999999999988754
No 4
>PRK06753 hypothetical protein; Provisional
Probab=99.95 E-value=7.5e-26 Score=168.14 Aligned_cols=168 Identities=24% Similarity=0.344 Sum_probs=137.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCce
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGAT 86 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (184)
||+||||||+|+++|+.|++.|++|+|+|+.+.+...++++.+.+.+.+.++.+|+++.+.....+...+.+++......
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 89999999999999999999999999999999887788999999999999999999999888777777777776543322
Q ss_pred eeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH
Q 030042 87 QETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST 166 (184)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~ 166 (184)
....+. .+.....++|..|.+.|.+.+++.+++++++|++++..+ +. +.+.+.+|+++.+|+||+|+|.+|.
T Consensus 82 ~~~~~~----~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~---~~-v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 82 NKVKLK----SNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENET---DK-VTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred eecccc----cCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecC---Cc-EEEEECCCCEEecCEEEECCCcchH
Confidence 222221 223345789999999999998777899999999998664 44 7888889989999999999999999
Q ss_pred HHhhhCCCC-Cccccee
Q 030042 167 VAWWLGLSE-PLNVNIG 182 (184)
Q Consensus 167 ~~~~~~~~~-~~~~~~~ 182 (184)
+|+.++... +.+.++.
T Consensus 154 vR~~~~~~~~~~~~g~~ 170 (373)
T PRK06753 154 VRQSVNADSKVRYQGYT 170 (373)
T ss_pred HHHHhCCCCCceEcceE
Confidence 999886543 4444443
No 5
>PRK06184 hypothetical protein; Provisional
Probab=99.95 E-value=8.5e-26 Score=173.47 Aligned_cols=170 Identities=21% Similarity=0.300 Sum_probs=130.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT 83 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
.++||+||||||+|+++|+.|+++|++|+|+||.+.+...+++..+.+++++.++.+|+++++.+...+......+....
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 81 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDG 81 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCc
Confidence 46899999999999999999999999999999998887778999999999999999999999988776666555544322
Q ss_pred CceeeeecCCC-----CCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEE---ecCcEEE
Q 030042 84 GATQETSLTGK-----FGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHL---VDGTIVK 153 (184)
Q Consensus 84 ~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~---~~g~~~~ 153 (184)
......+... ....+....+.+..+.+.|.+.+. ++++++++++++++.++ +. +.+.+ .++++++
T Consensus 82 -~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~---~~-v~v~~~~~~~~~~i~ 156 (502)
T PRK06184 82 -SVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDA---DG-VTARVAGPAGEETVR 156 (502)
T ss_pred -eEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcC---Cc-EEEEEEeCCCeEEEE
Confidence 1111211110 011123346677778777777764 78999999999998775 33 55555 4557899
Q ss_pred eeEEEecCCcchHHHhhhCCCCCcc
Q 030042 154 TKFLIGCDGIHSTVAWWLGLSEPLN 178 (184)
Q Consensus 154 a~~vI~a~G~~s~~~~~~~~~~~~~ 178 (184)
||+||+|+|.+|.+|+.++++.+..
T Consensus 157 a~~vVgADG~~S~vR~~lgi~~~g~ 181 (502)
T PRK06184 157 ARYLVGADGGRSFVRKALGIGFPGE 181 (502)
T ss_pred eCEEEECCCCchHHHHhCCCCcccC
Confidence 9999999999999999998776543
No 6
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.95 E-value=1.5e-25 Score=167.01 Aligned_cols=163 Identities=32% Similarity=0.451 Sum_probs=132.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecc-CCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKS-DGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT 83 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
.+||+||||||+|+++|+.|++.|++|+|+|+. ......+++..+.+.+++.|+++|+++.+.....+......++...
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 579999999999999999999999999999998 4556677999999999999999999888877666555555555433
Q ss_pred CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEe-cCcEEEeeEEEe
Q 030042 84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLV-DGTIVKTKFLIG 159 (184)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~-~g~~~~a~~vI~ 159 (184)
.....++...... +.....+.+..+.+.|.+.+. +++++++++|+.++.++ +. +.+... +|++++||+||+
T Consensus 82 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~---~~-v~v~l~~dG~~~~a~llVg 156 (387)
T COG0654 82 RRLLIFDAAELGR-GALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDG---DG-VTVTLSFDGETLDADLLVG 156 (387)
T ss_pred ceeEEecccccCC-CcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC---Cc-eEEEEcCCCcEEecCEEEE
Confidence 3223333333222 445678999999999999884 48999999999999886 33 556666 999999999999
Q ss_pred cCCcchHHHhhhC
Q 030042 160 CDGIHSTVAWWLG 172 (184)
Q Consensus 160 a~G~~s~~~~~~~ 172 (184)
|||.+|.+|+.++
T Consensus 157 ADG~~S~vR~~~~ 169 (387)
T COG0654 157 ADGANSAVRRAAG 169 (387)
T ss_pred CCCCchHHHHhcC
Confidence 9999999999999
No 7
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.94 E-value=1.2e-25 Score=173.89 Aligned_cols=170 Identities=27% Similarity=0.392 Sum_probs=132.7
Q ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042 3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG 82 (184)
Q Consensus 3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
+.++||+||||||+|+++|+.|+++|++|+|+||.+.+...+++..+.+++++.++.+|+++++.....+...+.+.+..
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 87 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAK 87 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCC
Confidence 34789999999999999999999999999999999888888899999999999999999999998877766666666533
Q ss_pred CCceeeeecCCCCCCCC-CCeeeeHHHHHHHHHhhC---CCCeeeeCceEEEEeccCCCCCcceEEEEe--cC--cEEEe
Q 030042 83 TGATQETSLTGKFGDGS-GPRFIHRKKLLQTLADEL---PNGTIHFSSKIAAIDSQTHDGSSPVFIHLV--DG--TIVKT 154 (184)
Q Consensus 83 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~--~g--~~~~a 154 (184)
......+........++ ....+++..+.+.|.+.+ ++++++++++|++++.++ ++ +.+.+. +| ++++|
T Consensus 88 g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~---~~-v~v~~~~~~G~~~~i~a 163 (538)
T PRK06183 88 GRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDD---DG-VTVTLTDADGQRETVRA 163 (538)
T ss_pred CCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcC---Ce-EEEEEEcCCCCEEEEEE
Confidence 32223333211111222 334567777888877765 378999999999999876 44 666654 56 47999
Q ss_pred eEEEecCCcchHHHhhhCCCCC
Q 030042 155 KFLIGCDGIHSTVAWWLGLSEP 176 (184)
Q Consensus 155 ~~vI~a~G~~s~~~~~~~~~~~ 176 (184)
|+||+|||.+|.+|+.+++..+
T Consensus 164 d~vVgADG~~S~vR~~lg~~~~ 185 (538)
T PRK06183 164 RYVVGCDGANSFVRRTLGVPFE 185 (538)
T ss_pred EEEEecCCCchhHHHHcCCeee
Confidence 9999999999999999987654
No 8
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.94 E-value=1.9e-25 Score=167.21 Aligned_cols=175 Identities=29% Similarity=0.378 Sum_probs=137.8
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEe
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTN 80 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
|+ +..||+|||||++|+++|..|++.|++|+|+||.+.+...++++.+.+.+.+.++.+|+++.+.........+.+..
T Consensus 1 ~~-~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~ 79 (396)
T PRK08163 1 MT-KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMD 79 (396)
T ss_pred CC-CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEe
Confidence 66 46899999999999999999999999999999998888888999999999999999999999887776667776665
Q ss_pred cCCCce-eeeecCCC--CCCCCCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEe
Q 030042 81 LGTGAT-QETSLTGK--FGDGSGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKT 154 (184)
Q Consensus 81 ~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a 154 (184)
...+.. ....+... ...+.....+++.++.+.|.+.+. +++++++++++++...+ +. +.+.+.+|+++.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~---~~-v~v~~~~g~~~~a 155 (396)
T PRK08163 80 AVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDG---DG-VTVFDQQGNRWTG 155 (396)
T ss_pred CCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCC---Cc-eEEEEcCCCEEec
Confidence 433322 23322211 112233457899999999988774 48899999999998764 44 7788888888999
Q ss_pred eEEEecCCcchHHHhhh-CCCCCcccce
Q 030042 155 KFLIGCDGIHSTVAWWL-GLSEPLNVNI 181 (184)
Q Consensus 155 ~~vI~a~G~~s~~~~~~-~~~~~~~~~~ 181 (184)
|+||+|+|.+|.+|+.+ +. .+.+.++
T Consensus 156 d~vV~AdG~~S~~r~~~~g~-~~~~~g~ 182 (396)
T PRK08163 156 DALIGCDGVKSVVRQSLVGD-APRVTGH 182 (396)
T ss_pred CEEEECCCcChHHHhhccCC-CCCcccc
Confidence 99999999999998876 43 3444443
No 9
>PRK07588 hypothetical protein; Provisional
Probab=99.94 E-value=1.6e-25 Score=167.26 Aligned_cols=162 Identities=24% Similarity=0.337 Sum_probs=132.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.||+|||||++|+++|+.|+++|++|+|+|+.+.....++++.+.+.+.+.++++|+++.+.....+...+.++......
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~ 80 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRR 80 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCE
Confidence 38999999999999999999999999999999877667788889999999999999999998887777777777644332
Q ss_pred eeeeecCCCC-CCCCCCeeeeHHHHHHHHHhhCC-CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCc
Q 030042 86 TQETSLTGKF-GDGSGPRFIHRKKLLQTLADELP-NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGI 163 (184)
Q Consensus 86 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~-~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~ 163 (184)
...+.+.... ..+.....+.+..|.+.|.+..+ +++++++++|++++..+ +. +.|.+++|+++++|+||+|+|.
T Consensus 81 ~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~---~~-v~v~~~~g~~~~~d~vIgADG~ 156 (391)
T PRK07588 81 KADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHR---DG-VRVTFERGTPRDFDLVIGADGL 156 (391)
T ss_pred EEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECC---Ce-EEEEECCCCEEEeCEEEECCCC
Confidence 2333322211 12224457889999999888766 58999999999998765 44 7888899988999999999999
Q ss_pred chHHHhhh
Q 030042 164 HSTVAWWL 171 (184)
Q Consensus 164 ~s~~~~~~ 171 (184)
+|.+|+.+
T Consensus 157 ~S~vR~~~ 164 (391)
T PRK07588 157 HSHVRRLV 164 (391)
T ss_pred Cccchhhc
Confidence 99999865
No 10
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.94 E-value=2.1e-25 Score=167.06 Aligned_cols=174 Identities=24% Similarity=0.290 Sum_probs=132.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
-+|+|||||++|+++|+.|+++|++|+|+|+.+.+...++++.+.+.+.+.|+.+|+++++.........+.+.......
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 58999999999999999999999999999999887788899999999999999999999998766555544443321111
Q ss_pred e-eeeecCCC--CCCCCCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEE---ecCcEEEeeE
Q 030042 86 T-QETSLTGK--FGDGSGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHL---VDGTIVKTKF 156 (184)
Q Consensus 86 ~-~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~---~~g~~~~a~~ 156 (184)
. ........ ..++.....+++.+|.+.|.+.+. +++++++++|++++..+ +. +.+.+ .+++++++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~---~~-v~v~~~~~~~~~~~~adl 158 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTG---NS-ITATIIRTNSVETVSAAY 158 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCC---Cc-eEEEEEeCCCCcEEecCE
Confidence 1 11111111 111223446789999999998763 68899999999998764 33 55554 3346799999
Q ss_pred EEecCCcchHHHhhhCCCCCcccceec
Q 030042 157 LIGCDGIHSTVAWWLGLSEPLNVNIGC 183 (184)
Q Consensus 157 vI~a~G~~s~~~~~~~~~~~~~~~~~~ 183 (184)
||+|||.+|.+|+.++.+.+.|+++.+
T Consensus 159 vIgADG~~S~vR~~~~~~~~~~~g~~~ 185 (400)
T PRK06475 159 LIACDGVWSMLRAKAGFSKARFSGHIA 185 (400)
T ss_pred EEECCCccHhHHhhcCCCCCCcCCceE
Confidence 999999999999998777777877654
No 11
>PRK07045 putative monooxygenase; Reviewed
Probab=99.94 E-value=3.6e-25 Score=165.27 Aligned_cols=169 Identities=24% Similarity=0.271 Sum_probs=128.5
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCC-ccceEEE
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPP-VNRISVT 79 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 79 (184)
|.+.++||+||||||+|+++|+.|++.|++|+|+|+.+.+...+++..+.+.+.+.|+.+|+++.+...... ...+...
T Consensus 1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 80 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLY 80 (388)
T ss_pred CCCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEe
Confidence 666679999999999999999999999999999999988766566677999999999999999998765432 3334333
Q ss_pred ecCCCce-eeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEee
Q 030042 80 NLGTGAT-QETSLTGKFGDGSGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTK 155 (184)
Q Consensus 80 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~ 155 (184)
. .++. ....+......+ ....+.+..+.+.|.+.+. ++++++++++++++..++ +.. +.|.+.+|+++.+|
T Consensus 81 ~--~g~~~~~~~~~~~~~~g-~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~-~~v~~~~g~~~~~~ 155 (388)
T PRK07045 81 H--DKELIASLDYRSASALG-YFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDAD-GTV-TSVTLSDGERVAPT 155 (388)
T ss_pred c--CCcEEEEecCCccccCC-ceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCC-CcE-EEEEeCCCCEEECC
Confidence 2 2222 333333221122 2345678889888888762 789999999999998752 222 56788888899999
Q ss_pred EEEecCCcchHHHhh-hCCC
Q 030042 156 FLIGCDGIHSTVAWW-LGLS 174 (184)
Q Consensus 156 ~vI~a~G~~s~~~~~-~~~~ 174 (184)
+||+|+|.+|.+|+. ++.+
T Consensus 156 ~vIgADG~~S~vR~~~~~~~ 175 (388)
T PRK07045 156 VLVGADGARSMIRDDVLRMP 175 (388)
T ss_pred EEEECCCCChHHHHHhhCCC
Confidence 999999999999995 4544
No 12
>PRK05868 hypothetical protein; Validated
Probab=99.94 E-value=6.2e-25 Score=162.85 Aligned_cols=163 Identities=23% Similarity=0.260 Sum_probs=129.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.||+|||||++|+++|+.|++.|++|+|+|+.+.+...+.+..+.+.+.+.++++|+++.+.+...+...+.+.+.....
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 38999999999999999999999999999999888777888999999999999999999998777777777776544322
Q ss_pred eeeeecCC-C-CCCCCCCeeeeHHHHHHHHHhhCC-CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCC
Q 030042 86 TQETSLTG-K-FGDGSGPRFIHRKKLLQTLADELP-NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDG 162 (184)
Q Consensus 86 ~~~~~~~~-~-~~~~~~~~~~~~~~l~~~l~~~~~-~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G 162 (184)
........ . ...+.....+.|.+|.+.|.+..+ +++++++++|++++.++ +. +.+.+.+|+++++|+||+|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~---~~-v~v~~~dg~~~~adlvIgADG 157 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDG---DS-VRVTFERAAAREFDLVIGADG 157 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecC---Ce-EEEEECCCCeEEeCEEEECCC
Confidence 21111100 0 011112346778899988877654 89999999999998654 44 888899998999999999999
Q ss_pred cchHHHhhhC
Q 030042 163 IHSTVAWWLG 172 (184)
Q Consensus 163 ~~s~~~~~~~ 172 (184)
.+|.+|+.+.
T Consensus 158 ~~S~vR~~~~ 167 (372)
T PRK05868 158 LHSNVRRLVF 167 (372)
T ss_pred CCchHHHHhc
Confidence 9999999874
No 13
>PRK06847 hypothetical protein; Provisional
Probab=99.94 E-value=2.8e-25 Score=165.22 Aligned_cols=177 Identities=28% Similarity=0.361 Sum_probs=136.9
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEe
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTN 80 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
|+ +..||+|||||++|+++|+.|++.|++|+|+|+.+.+...+.+..+.+.+.+.++.+|+++.+.+...+...+.++.
T Consensus 1 m~-~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~ 79 (375)
T PRK06847 1 MA-AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFD 79 (375)
T ss_pred CC-CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEEC
Confidence 66 46799999999999999999999999999999998877778899999999999999999999888777777776665
Q ss_pred cCCCceeeeecCCCC-CCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEE
Q 030042 81 LGTGATQETSLTGKF-GDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFL 157 (184)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~v 157 (184)
............... ...+....+.+.++.+.|.+.+. +++++++++|++++..+ +. +.+.+.+|+++.+|+|
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~---~~-~~v~~~~g~~~~ad~v 155 (375)
T PRK06847 80 PDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDD---DG-VTVTFSDGTTGRYDLV 155 (375)
T ss_pred CCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcC---CE-EEEEEcCCCEEEcCEE
Confidence 433221222111110 01123346778888888888774 78999999999998765 44 7788888989999999
Q ss_pred EecCCcchHHHhhh-CCC-CCccccee
Q 030042 158 IGCDGIHSTVAWWL-GLS-EPLNVNIG 182 (184)
Q Consensus 158 I~a~G~~s~~~~~~-~~~-~~~~~~~~ 182 (184)
|+|+|.+|.+++.+ +.. .|.|.+..
T Consensus 156 I~AdG~~s~~r~~l~~~~~~~~~~g~~ 182 (375)
T PRK06847 156 VGADGLYSKVRSLVFPDEPEPEYTGQG 182 (375)
T ss_pred EECcCCCcchhhHhcCCCCCceeccce
Confidence 99999999998876 543 45665543
No 14
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.94 E-value=4e-25 Score=165.21 Aligned_cols=172 Identities=25% Similarity=0.319 Sum_probs=130.2
Q ss_pred CCC-ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC-----ccceeeecccHHHHHHHcCChHHHHhc-CCCc
Q 030042 1 MAM-VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG-----TGAAISFAPNAWLALDALGVSHKLASI-YPPV 73 (184)
Q Consensus 1 m~~-~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 73 (184)
|++ ..+||+||||||+|+++|+.|+++|++|+|+|+.+.+.. ..+...+.+.+.+.++.+|+++.+.+. ..+.
T Consensus 1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~ 80 (392)
T PRK08773 1 MSRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPY 80 (392)
T ss_pred CCCCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcc
Confidence 554 468999999999999999999999999999999875421 235567889999999999999998763 4556
Q ss_pred cceEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcE
Q 030042 74 NRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTI 151 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~ 151 (184)
..+.++.........+...... .....+.+++..+.+.|.+.+. +++++++++|++++..+ +. +.+.+.+|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~---~~-v~v~~~~g~~ 155 (392)
T PRK08773 81 RRMRVWDAGGGGELGFDADTLG-REQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDA---DR-VRLRLDDGRR 155 (392)
T ss_pred cEEEEEeCCCCceEEechhccC-CCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecC---Ce-EEEEECCCCE
Confidence 6666555332222222211110 1112357788899888888764 78999999999998765 44 7788888889
Q ss_pred EEeeEEEecCCcchHHHhhhCCCCCc
Q 030042 152 VKTKFLIGCDGIHSTVAWWLGLSEPL 177 (184)
Q Consensus 152 ~~a~~vI~a~G~~s~~~~~~~~~~~~ 177 (184)
+.+|+||+|+|.+|.+++.++++.+.
T Consensus 156 ~~a~~vV~AdG~~S~vr~~~g~~~~~ 181 (392)
T PRK08773 156 LEAALAIAADGAASTLRELAGLPVSR 181 (392)
T ss_pred EEeCEEEEecCCCchHHHhhcCCceE
Confidence 99999999999999999998877643
No 15
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.94 E-value=3.5e-25 Score=165.39 Aligned_cols=170 Identities=21% Similarity=0.289 Sum_probs=131.2
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEe
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTN 80 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
|.|+.+||+|||||++|+++|+.|++.|++|+|+|+.+.+. .+++..+.+.+.+.++.+|+++.+.....+...+.++.
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~-~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~ 81 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYA-DLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVD 81 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCC-CcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEe
Confidence 77788999999999999999999999999999999987653 35667788889999999999999988777788887776
Q ss_pred cCCCce--eeeecCCCCC-CCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEee
Q 030042 81 LGTGAT--QETSLTGKFG-DGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTK 155 (184)
Q Consensus 81 ~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~ 155 (184)
...... ....+..... ..+..+.+.+..+.+.|.+.+. +...+++++|++++..+ +. +.+.+.+|++++||
T Consensus 82 ~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~---~~-~~v~~~~g~~~~a~ 157 (388)
T PRK07494 82 ATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPRE---DE-VTVTLADGTTLSAR 157 (388)
T ss_pred CCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcC---Ce-EEEEECCCCEEEEe
Confidence 443211 1122221111 1112356888889888888764 22338899999998765 44 77888888899999
Q ss_pred EEEecCCcchHHHhhhCCCC
Q 030042 156 FLIGCDGIHSTVAWWLGLSE 175 (184)
Q Consensus 156 ~vI~a~G~~s~~~~~~~~~~ 175 (184)
+||+|+|.+|.+++.++++.
T Consensus 158 ~vI~AdG~~S~vr~~~g~~~ 177 (388)
T PRK07494 158 LVVGADGRNSPVREAAGIGV 177 (388)
T ss_pred EEEEecCCCchhHHhcCCCc
Confidence 99999999999999988764
No 16
>PRK06185 hypothetical protein; Provisional
Probab=99.94 E-value=2.9e-25 Score=166.75 Aligned_cols=174 Identities=22% Similarity=0.262 Sum_probs=128.8
Q ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhc-CCCccceEEEec
Q 030042 3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASI-YPPVNRISVTNL 81 (184)
Q Consensus 3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
.+++||+|||||++|+++|+.|++.|++|+|+|+.+......++..+.+.+.+.++.+|+++.+.+. ..+...+.++..
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~ 83 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIG 83 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEEC
Confidence 3579999999999999999999999999999999876555567888999999999999999988763 345556655532
Q ss_pred CCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhC---CCCeeeeCceEEEEeccCCCCCc-ceEEEEecCc-EEEeeE
Q 030042 82 GTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADEL---PNGTIHFSSKIAAIDSQTHDGSS-PVFIHLVDGT-IVKTKF 156 (184)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~~~~~~~~~~~-~~~v~~~~g~-~~~a~~ 156 (184)
........+.......+....+.+..+.+.|.+.+ ++++++++++++++...++ .. .+.+...+|+ +++||+
T Consensus 84 -~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~--~v~~v~~~~~~g~~~i~a~~ 160 (407)
T PRK06185 84 -GRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGG--RVTGVRARTPDGPGEIRADL 160 (407)
T ss_pred -CeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCC--EEEEEEEEcCCCcEEEEeCE
Confidence 22122233332221222345677888888887765 3789999999999987652 22 0234445664 799999
Q ss_pred EEecCCcchHHHhhhCCCCCccc
Q 030042 157 LIGCDGIHSTVAWWLGLSEPLNV 179 (184)
Q Consensus 157 vI~a~G~~s~~~~~~~~~~~~~~ 179 (184)
||+|+|.+|.+|+.++++.+.++
T Consensus 161 vI~AdG~~S~vr~~~gi~~~~~~ 183 (407)
T PRK06185 161 VVGADGRHSRVRALAGLEVREFG 183 (407)
T ss_pred EEECCCCchHHHHHcCCCccccC
Confidence 99999999999999988765433
No 17
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.94 E-value=6e-25 Score=164.87 Aligned_cols=167 Identities=23% Similarity=0.370 Sum_probs=133.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCC--CCeEEEeccCCCC--CccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEe
Q 030042 5 EKDVVIIGAGIAGLATALALKRLG--VEPLVLEKSDGLR--GTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTN 80 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g--~~v~vie~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
++||+||||||+|+++|+.|+++| ++|+|+|+.+... ..+++..+.+.+.+.++.+|+++.+.....+...+.+++
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 80 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD 80 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence 379999999999999999999995 9999999987543 347899999999999999999999988877777777766
Q ss_pred cCCCce---eeeecCCCCCCCC-CCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEe
Q 030042 81 LGTGAT---QETSLTGKFGDGS-GPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKT 154 (184)
Q Consensus 81 ~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a 154 (184)
...... ....+......+. ....+++..+.+.|.+.+. +++++++++|++++..+ +. +.+.+.+|.++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~---~~-v~v~~~~g~~~~a 156 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRD---EG-VTVTLSDGSVLEA 156 (403)
T ss_pred CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC---CE-EEEEECCCCEEEe
Confidence 433222 1223322111222 3357899999999988775 78999999999998765 44 7788888889999
Q ss_pred eEEEecCCcchHHHhhhCCCC
Q 030042 155 KFLIGCDGIHSTVAWWLGLSE 175 (184)
Q Consensus 155 ~~vI~a~G~~s~~~~~~~~~~ 175 (184)
|+||+|+|.+|.+++.++++.
T Consensus 157 d~vI~AdG~~S~vr~~~g~~~ 177 (403)
T PRK07333 157 RLLVAADGARSKLRELAGIKT 177 (403)
T ss_pred CEEEEcCCCChHHHHHcCCCc
Confidence 999999999999999988765
No 18
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.94 E-value=1.2e-24 Score=164.56 Aligned_cols=170 Identities=25% Similarity=0.304 Sum_probs=128.2
Q ss_pred ccEEEECCCHHHHHHHHHHHh----CCCCeEEEeccCCCC------------CccceeeecccHHHHHHHcCChHHHHhc
Q 030042 6 KDVVIIGAGIAGLATALALKR----LGVEPLVLEKSDGLR------------GTGAAISFAPNAWLALDALGVSHKLASI 69 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~----~g~~v~vie~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (184)
|||+||||||+|+++|+.|++ +|++|+|||+.+.+. ..+++..+.+.+++.|+.+|+++.+.+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 699999999999999999998 899999999954322 1357899999999999999999999765
Q ss_pred -CCCccceEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC-----CCeeeeCceEEEEecc----CCCCC
Q 030042 70 -YPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP-----NGTIHFSSKIAAIDSQ----THDGS 139 (184)
Q Consensus 70 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~i~~~~~v~~~~~~----~~~~~ 139 (184)
..+...+.++..... ....|.......+..+.+.+..+.+.|.+.+. +++++++++|++++.. +++++
T Consensus 81 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~ 158 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSL--ALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSN 158 (437)
T ss_pred cCCceeeEEEecCCCC--ceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCC
Confidence 356666666543321 22333322111123456788888887777653 3789999999999753 11124
Q ss_pred cceEEEEecCcEEEeeEEEecCCcchHHHhhhCCCCCcc
Q 030042 140 SPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGLSEPLN 178 (184)
Q Consensus 140 ~~~~v~~~~g~~~~a~~vI~a~G~~s~~~~~~~~~~~~~ 178 (184)
. +.|.+.+|++++||+||+|||.+|.+|+.++++.+.+
T Consensus 159 ~-v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~ 196 (437)
T TIGR01989 159 W-VHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGW 196 (437)
T ss_pred c-eEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccce
Confidence 4 8888899999999999999999999999998876543
No 19
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.93 E-value=8.8e-25 Score=164.01 Aligned_cols=166 Identities=19% Similarity=0.276 Sum_probs=127.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC--------CCccceeeecccHHHHHHHcCChHHHHhc-CCCccc
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL--------RGTGAAISFAPNAWLALDALGVSHKLASI-YPPVNR 75 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 75 (184)
.+||+||||||+|+++|+.|+++|++|+|+|+.+.. ....++..+.+.+.+.|+.+|+++.+.+. ..+...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE 81 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence 489999999999999999999999999999998631 11235677899999999999999998753 456666
Q ss_pred eEEEecCCCceeeeecCCCCCCCC-CCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEE
Q 030042 76 ISVTNLGTGATQETSLTGKFGDGS-GPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIV 152 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~ 152 (184)
+.++..... ....|........ ..+.+.+..+.+.|.+.+. ++++++++++++++..+ +. +.|.+.+|+++
T Consensus 82 ~~~~~~~~~--~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~---~~-v~v~~~~g~~~ 155 (405)
T PRK05714 82 MQVWDGSGT--GQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSG---DD-WLLTLADGRQL 155 (405)
T ss_pred EEEEcCCCC--ceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcC---Ce-EEEEECCCCEE
Confidence 666654332 2223332111111 2346778888888877664 78999999999998765 44 77888888889
Q ss_pred EeeEEEecCCcchHHHhhhCCCCC
Q 030042 153 KTKFLIGCDGIHSTVAWWLGLSEP 176 (184)
Q Consensus 153 ~a~~vI~a~G~~s~~~~~~~~~~~ 176 (184)
+||+||+|+|.+|.+|+.++.+.+
T Consensus 156 ~a~~vVgAdG~~S~vR~~lg~~~~ 179 (405)
T PRK05714 156 RAPLVVAADGANSAVRRLAGCATR 179 (405)
T ss_pred EeCEEEEecCCCchhHHhcCCCcc
Confidence 999999999999999999887654
No 20
>PRK08244 hypothetical protein; Provisional
Probab=99.93 E-value=1e-24 Score=167.18 Aligned_cols=164 Identities=21% Similarity=0.285 Sum_probs=126.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG 84 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
++||+||||||+|+++|+.|+++|++|+|+||.+.+...+++..+.+.+++.++++|+++.+.....+.....+.....
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~- 80 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDT- 80 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccc-
Confidence 4899999999999999999999999999999998887788999999999999999999999988766555544432211
Q ss_pred ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEE--ecC-cEEEeeEEEe
Q 030042 85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHL--VDG-TIVKTKFLIG 159 (184)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~--~~g-~~~~a~~vI~ 159 (184)
...+.......+....+.+..+.+.|.+.+. ++++++++++++++..+ +. +.+.. .+| ++++||+||+
T Consensus 81 ---~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~---~~-v~v~~~~~~g~~~i~a~~vVg 153 (493)
T PRK08244 81 ---RLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDG---DG-VEVVVRGPDGLRTLTSSYVVG 153 (493)
T ss_pred ---cCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcC---Ce-EEEEEEeCCccEEEEeCEEEE
Confidence 1122211111123345777788888877664 78999999999998765 33 44444 345 4799999999
Q ss_pred cCCcchHHHhhhCCCCC
Q 030042 160 CDGIHSTVAWWLGLSEP 176 (184)
Q Consensus 160 a~G~~s~~~~~~~~~~~ 176 (184)
|+|.+|.+|+.++++.+
T Consensus 154 ADG~~S~vR~~lgi~~~ 170 (493)
T PRK08244 154 ADGAGSIVRKQAGIAFP 170 (493)
T ss_pred CCCCChHHHHhcCCCcc
Confidence 99999999999987654
No 21
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.93 E-value=2e-24 Score=168.87 Aligned_cols=173 Identities=18% Similarity=0.255 Sum_probs=130.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRL-GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG 82 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
.++||+||||||+||++|+.|++. |++|+|||+.+.+...+++.++.+.+++.|+.+|+++.+.....+...+.++...
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~ 110 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD 110 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence 468999999999999999999995 9999999999888778899999999999999999999998877777777776543
Q ss_pred CCceeee----ecCCC--CCCCCCCeeeeHHHHHHHHHhhCC--C--CeeeeCceEEEEeccCCCCCcceEEEEe-----
Q 030042 83 TGATQET----SLTGK--FGDGSGPRFIHRKKLLQTLADELP--N--GTIHFSSKIAAIDSQTHDGSSPVFIHLV----- 147 (184)
Q Consensus 83 ~~~~~~~----~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~--~--~~i~~~~~v~~~~~~~~~~~~~~~v~~~----- 147 (184)
....... .+... .........+++..+.+.|.+.+. + +.+.+++++++++.+++.... +++...
T Consensus 111 ~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~-V~v~l~~~~~~ 189 (634)
T PRK08294 111 PADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYP-VTVTLRRTDGE 189 (634)
T ss_pred CccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCC-EEEEEEECCCC
Confidence 2111000 01110 011123356777788888887763 3 477899999999876431233 556553
Q ss_pred -cC--cEEEeeEEEecCCcchHHHhhhCCCCCc
Q 030042 148 -DG--TIVKTKFLIGCDGIHSTVAWWLGLSEPL 177 (184)
Q Consensus 148 -~g--~~~~a~~vI~a~G~~s~~~~~~~~~~~~ 177 (184)
+| ++++||+||+|||++|.+|+.+|++.+.
T Consensus 190 ~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G 222 (634)
T PRK08294 190 HEGEEETVRAKYVVGCDGARSRVRKAIGRELRG 222 (634)
T ss_pred CCCceEEEEeCEEEECCCCchHHHHhcCCCccC
Confidence 35 5899999999999999999999887654
No 22
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.93 E-value=1.6e-25 Score=165.05 Aligned_cols=167 Identities=30% Similarity=0.472 Sum_probs=123.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCcc--ceEEEec-
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVN--RISVTNL- 81 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~- 81 (184)
++||+||||||+|+++|+.|+++|++|+|||+.+.+...+++..+.+.+.+.|+.+|+++.+.....+.. ....+..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~ 80 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGI 80 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEET
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeeccc
Confidence 4799999999999999999999999999999999888888999999999999999999999888764333 2222222
Q ss_pred CCCc-e-----eeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEe---cC-
Q 030042 82 GTGA-T-----QETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLV---DG- 149 (184)
Q Consensus 82 ~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~g- 149 (184)
.... . ....+. ....++....+.+.++.+.|.+.++ +++++++++++++..++ +. +.+.+. +|
T Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~---~~-~~~~~~~~~~g~ 155 (356)
T PF01494_consen 81 SDSRIWVENPQIREDME-IDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDD---DG-VTVVVRDGEDGE 155 (356)
T ss_dssp TTSEEEEEEEEEEEECH-STSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEET---TE-EEEEEEETCTCE
T ss_pred CCccceeeecccceeee-ccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccc---cc-cccccccccCCc
Confidence 0110 0 111111 1123346678899999999999875 79999999999998876 33 333332 34
Q ss_pred -cEEEeeEEEecCCcchHHHhhhCCCCC
Q 030042 150 -TIVKTKFLIGCDGIHSTVAWWLGLSEP 176 (184)
Q Consensus 150 -~~~~a~~vI~a~G~~s~~~~~~~~~~~ 176 (184)
++++||+||+|+|.+|.+|+.++...+
T Consensus 156 ~~~i~adlvVgADG~~S~vR~~l~~~~~ 183 (356)
T PF01494_consen 156 EETIEADLVVGADGAHSKVRKQLGIDRP 183 (356)
T ss_dssp EEEEEESEEEE-SGTT-HHHHHTTGGEE
T ss_pred eeEEEEeeeecccCcccchhhhcccccc
Confidence 379999999999999999999986643
No 23
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.93 E-value=1.9e-24 Score=162.77 Aligned_cols=167 Identities=20% Similarity=0.258 Sum_probs=124.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC--ccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEec
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG--TGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNL 81 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
..+||+||||||+|+++|+.|++.|++|+|+|+.+.+.. .+++..+.+.+.+.|+.+|+++++.....+...+.++..
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 96 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA 96 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence 368999999999999999999999999999999887543 467889999999999999999999887777776666543
Q ss_pred CCCceeeeecCCCCCCCC-CCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEec--C-cEEEe
Q 030042 82 GTGATQETSLTGKFGDGS-GPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLVD--G-TIVKT 154 (184)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~--g-~~~~a 154 (184)
.......+..... ... ..+...+..+.+.|.+.+. ++++++++++++++..+ +. +.|.+.+ + .+++|
T Consensus 97 ~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~---~~-~~v~~~~~~~~~~i~a 170 (415)
T PRK07364 97 DYPGVVKFQPTDL--GTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQ---DA-ATVTLEIEGKQQTLQS 170 (415)
T ss_pred CCCceeeeccccC--CCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC---Ce-eEEEEccCCcceEEee
Confidence 3211122221111 111 1233444567777777653 68999999999998765 33 5566543 2 46999
Q ss_pred eEEEecCCcchHHHhhhCCCCC
Q 030042 155 KFLIGCDGIHSTVAWWLGLSEP 176 (184)
Q Consensus 155 ~~vI~a~G~~s~~~~~~~~~~~ 176 (184)
|+||+|||.+|.+|+.++....
T Consensus 171 dlvIgADG~~S~vR~~~~~~~~ 192 (415)
T PRK07364 171 KLVVAADGARSPIRQAAGIKTK 192 (415)
T ss_pred eEEEEeCCCCchhHHHhCCCce
Confidence 9999999999999999887643
No 24
>PRK07236 hypothetical protein; Provisional
Probab=99.93 E-value=1.7e-24 Score=161.49 Aligned_cols=167 Identities=25% Similarity=0.317 Sum_probs=125.6
Q ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC-CCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEec
Q 030042 3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL-RGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNL 81 (184)
Q Consensus 3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
|+..||+|||||++|+++|+.|++.|++|+|+||.+.. ...+.++.+.+.+.+.|+.+|+++.. ....+.....+...
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~-~~~~~~~~~~~~~~ 82 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPA-DIGVPSRERIYLDR 82 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccc-ccccCccceEEEeC
Confidence 56789999999999999999999999999999998754 34567888999999999999998665 33344444444442
Q ss_pred CCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecC
Q 030042 82 GTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCD 161 (184)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~ 161 (184)
.......... ......+..+.+.|.+.+++..++++++|++++..+ +. +.+.+.+|+++++|+||+|+
T Consensus 83 ~g~~~~~~~~--------~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~---~~-v~v~~~~g~~~~ad~vIgAD 150 (386)
T PRK07236 83 DGRVVQRRPM--------PQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDG---DR-VTARFADGRRETADLLVGAD 150 (386)
T ss_pred CCCEeeccCC--------CccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecC---Ce-EEEEECCCCEEEeCEEEECC
Confidence 2211111111 111235677888888887778899999999998765 44 78888999999999999999
Q ss_pred CcchHHHhhh-CCCCCccccee
Q 030042 162 GIHSTVAWWL-GLSEPLNVNIG 182 (184)
Q Consensus 162 G~~s~~~~~~-~~~~~~~~~~~ 182 (184)
|.+|.+|+.+ +...+.|.+..
T Consensus 151 G~~S~vR~~l~~~~~~~~~g~~ 172 (386)
T PRK07236 151 GGRSTVRAQLLPDVRPTYAGYV 172 (386)
T ss_pred CCCchHHHHhCCCCCCCcCCeE
Confidence 9999999977 33346666543
No 25
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.93 E-value=3e-24 Score=160.04 Aligned_cols=167 Identities=19% Similarity=0.258 Sum_probs=121.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC--CC----ccceeeecccHHHHHHHcCChHHHHhc-CCCccce
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL--RG----TGAAISFAPNAWLALDALGVSHKLASI-YPPVNRI 76 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 76 (184)
.++||+||||||+|+++|+.|++.|++|+|+|+.+.. .. ..+...+.+.+++.|+.+|+++.+... ..+...+
T Consensus 2 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~ 81 (384)
T PRK08849 2 NKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRL 81 (384)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceE
Confidence 4589999999999999999999999999999987522 11 124568999999999999999988653 3455555
Q ss_pred EEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhC---CCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEE
Q 030042 77 SVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADEL---PNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVK 153 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~ 153 (184)
..+..... ...+...... .....+.+.+..+...|.+.+ +++++++++++++++.++ +. +.+.+.+|.+++
T Consensus 82 ~~~~~~~~-~~~~~~~~~~-~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~---~~-~~v~~~~g~~~~ 155 (384)
T PRK08849 82 ETWEHPEC-RTRFHSDELN-LDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSA---EG-NRVTLESGAEIE 155 (384)
T ss_pred EEEeCCCc-eEEecccccC-CCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcC---Ce-EEEEECCCCEEE
Confidence 54442211 1222111110 111124455566777776654 378999999999998865 44 778888999999
Q ss_pred eeEEEecCCcchHHHhhhCCCCC
Q 030042 154 TKFLIGCDGIHSTVAWWLGLSEP 176 (184)
Q Consensus 154 a~~vI~a~G~~s~~~~~~~~~~~ 176 (184)
+|+||+|||.+|.+|+.+++...
T Consensus 156 ~~lvIgADG~~S~vR~~~gi~~~ 178 (384)
T PRK08849 156 AKWVIGADGANSQVRQLAGIGIT 178 (384)
T ss_pred eeEEEEecCCCchhHHhcCCCce
Confidence 99999999999999999887643
No 26
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.93 E-value=1.9e-24 Score=162.13 Aligned_cols=167 Identities=19% Similarity=0.249 Sum_probs=127.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEecc-CCCC----CccceeeecccHHHHHHHcCChHHHHhc-CCCccceE
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKS-DGLR----GTGAAISFAPNAWLALDALGVSHKLASI-YPPVNRIS 77 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 77 (184)
..+||+||||||+|+++|+.|++.|++|+|+|+. +... ...++..+.+.+.+.|+.+|+++.+.+. ..+...+.
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~ 82 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAME 82 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEE
Confidence 4689999999999999999999999999999996 2221 2357788999999999999999999764 56667777
Q ss_pred EEecCCCceeeeecCCCCCCCC-CCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEE
Q 030042 78 VTNLGTGATQETSLTGKFGDGS-GPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVK 153 (184)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~ 153 (184)
++.... .....+.......+ ..+.+.+..+.+.|.+.+. +++++++++|++++.++ +. +.|.+.+|++++
T Consensus 83 ~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~---~~-~~v~~~~g~~~~ 156 (405)
T PRK08850 83 VWEQDS--FARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGE---SE-AWLTLDNGQALT 156 (405)
T ss_pred EEeCCC--CceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeC---Ce-EEEEECCCCEEE
Confidence 765432 12222222111111 2345667777777777653 68999999999998765 44 778888999999
Q ss_pred eeEEEecCCcchHHHhhhCCCCC
Q 030042 154 TKFLIGCDGIHSTVAWWLGLSEP 176 (184)
Q Consensus 154 a~~vI~a~G~~s~~~~~~~~~~~ 176 (184)
||+||+|+|.+|.+|+.++++.+
T Consensus 157 a~lvIgADG~~S~vR~~~~~~~~ 179 (405)
T PRK08850 157 AKLVVGADGANSWLRRQMDIPLT 179 (405)
T ss_pred eCEEEEeCCCCChhHHHcCCCee
Confidence 99999999999999999987754
No 27
>PRK06834 hypothetical protein; Provisional
Probab=99.93 E-value=2.5e-24 Score=164.20 Aligned_cols=165 Identities=20% Similarity=0.239 Sum_probs=124.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC-CccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR-GTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT 83 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
.+||+||||||+|+++|+.|+++|++|+|+|+.+.+. ...++..+.+.+.+.++.+|+++.+.+.........+.
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~---- 78 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFA---- 78 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceee----
Confidence 5899999999999999999999999999999987654 34577889999999999999999987654333211110
Q ss_pred CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecC
Q 030042 84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCD 161 (184)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~ 161 (184)
...+.+.......+....+....+.+.|.+.+. ++++++++++++++.++ +. +.+.+.+|++++||+||+|+
T Consensus 79 --~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~---~~-v~v~~~~g~~i~a~~vVgAD 152 (488)
T PRK06834 79 --ATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDD---TG-VDVELSDGRTLRAQYLVGCD 152 (488)
T ss_pred --eEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC---Ce-EEEEECCCCEEEeCEEEEec
Confidence 011111111111122334566777777777664 78999999999999875 44 77777788889999999999
Q ss_pred CcchHHHhhhCCCCCccc
Q 030042 162 GIHSTVAWWLGLSEPLNV 179 (184)
Q Consensus 162 G~~s~~~~~~~~~~~~~~ 179 (184)
|.+|.+|+.++++.+.++
T Consensus 153 G~~S~vR~~lgi~~~g~~ 170 (488)
T PRK06834 153 GGRSLVRKAAGIDFPGWD 170 (488)
T ss_pred CCCCCcHhhcCCCCCCCC
Confidence 999999999998876543
No 28
>PRK07538 hypothetical protein; Provisional
Probab=99.93 E-value=6.2e-24 Score=159.73 Aligned_cols=171 Identities=27% Similarity=0.342 Sum_probs=127.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCce
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGAT 86 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (184)
||+||||||+|+++|+.|++.|++|+|+|+.+.+...+.+..+.+.+.+.|+++|+++.+.....+...+.+........
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI 81 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence 89999999999999999999999999999998877788999999999999999999999887777666776665433221
Q ss_pred eeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC---C-CeeeeCceEEEEeccCCCCCcceEEEEecC-----cEEEeeEE
Q 030042 87 QETSLTGKFGDGSGPRFIHRKKLLQTLADELP---N-GTIHFSSKIAAIDSQTHDGSSPVFIHLVDG-----TIVKTKFL 157 (184)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~-~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g-----~~~~a~~v 157 (184)
.................++|..|.+.|.+.+. + ..++++++|++++..+ ++ +.+.+.++ ++++||+|
T Consensus 82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~---~~-~~~~~~~~~~g~~~~~~adlv 157 (413)
T PRK07538 82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDA---DV-TVVFLGDRAGGDLVSVRGDVL 157 (413)
T ss_pred eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecC---Cc-eEEEEeccCCCccceEEeeEE
Confidence 11111111011113346899999998887752 3 4699999999998765 33 44444332 48999999
Q ss_pred EecCCcchHHHhhhCCC--CCcccce
Q 030042 158 IGCDGIHSTVAWWLGLS--EPLNVNI 181 (184)
Q Consensus 158 I~a~G~~s~~~~~~~~~--~~~~~~~ 181 (184)
|+|+|.+|.+|+.+... .+.|.+.
T Consensus 158 IgADG~~S~vR~~l~~~~~~~~~~g~ 183 (413)
T PRK07538 158 IGADGIHSAVRAQLYPDEGPPRWNGV 183 (413)
T ss_pred EECCCCCHHHhhhhcCCCCCCcccce
Confidence 99999999999988533 3555543
No 29
>PRK06126 hypothetical protein; Provisional
Probab=99.93 E-value=4.4e-24 Score=165.55 Aligned_cols=172 Identities=26% Similarity=0.392 Sum_probs=125.9
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCcc---ceE
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVN---RIS 77 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 77 (184)
|++..+||+||||||+|+++|+.|+++|++|+|+|+.+.+...+++..+.+.+++.|+.+|+++++.+...+.. ...
T Consensus 3 ~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~ 82 (545)
T PRK06126 3 ENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIA 82 (545)
T ss_pred CCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCce
Confidence 44567899999999999999999999999999999998777778899999999999999999999987664431 111
Q ss_pred EEe-cCCCceeeeecCCCC-----------C-CCC-CCeeeeHHHHHHHHHhhC---CCCeeeeCceEEEEeccCCCCCc
Q 030042 78 VTN-LGTGATQETSLTGKF-----------G-DGS-GPRFIHRKKLLQTLADEL---PNGTIHFSSKIAAIDSQTHDGSS 140 (184)
Q Consensus 78 ~~~-~~~~~~~~~~~~~~~-----------~-~~~-~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~~~~~~~~~~~ 140 (184)
+.. ........+.+.... . ..+ ....+.+..+.+.|.+.+ ++++++++++|++++.++ +.
T Consensus 83 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~---~~ 159 (545)
T PRK06126 83 YFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDA---DG 159 (545)
T ss_pred EEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECC---Ce
Confidence 111 112112222221110 0 011 234567777888888765 378999999999998775 33
Q ss_pred ceEEEE---ecCc--EEEeeEEEecCCcchHHHhhhCCCCC
Q 030042 141 PVFIHL---VDGT--IVKTKFLIGCDGIHSTVAWWLGLSEP 176 (184)
Q Consensus 141 ~~~v~~---~~g~--~~~a~~vI~a~G~~s~~~~~~~~~~~ 176 (184)
+.+.+ .+|+ ++.+|+||+|+|++|.+|+.+++...
T Consensus 160 -v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~ 199 (545)
T PRK06126 160 -VTATVEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYE 199 (545)
T ss_pred -EEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccc
Confidence 44443 3353 78999999999999999999987643
No 30
>PRK09126 hypothetical protein; Provisional
Probab=99.93 E-value=2.7e-24 Score=160.81 Aligned_cols=167 Identities=18% Similarity=0.281 Sum_probs=124.8
Q ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC-----CccceeeecccHHHHHHHcCChHHHHhcC-CCccce
Q 030042 3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR-----GTGAAISFAPNAWLALDALGVSHKLASIY-PPVNRI 76 (184)
Q Consensus 3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 76 (184)
|+++||+||||||+|+++|+.|+++|++|+|+||.+.+. ..+++..+.+.+.+.|+.+|+++.+.... .+....
T Consensus 1 ~~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~ 80 (392)
T PRK09126 1 MMHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDA 80 (392)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceE
Confidence 457999999999999999999999999999999987642 34667778899999999999998886553 344445
Q ss_pred EEEecCCCceeeeecCCCC-CCCCCCeeeeHHHHHHHHHhhC---CCCeeeeCceEEEEeccCCCCCcceEEEEecCcEE
Q 030042 77 SVTNLGTGATQETSLTGKF-GDGSGPRFIHRKKLLQTLADEL---PNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIV 152 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~ 152 (184)
.+.+.... ..+.+.... ......+.+.+..+.+.|.+.+ .+++++++++|++++..+ +. +.|.+++|+++
T Consensus 81 ~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~---~~-~~v~~~~g~~~ 154 (392)
T PRK09126 81 KVLNGRSP--FALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDD---DG-AQVTLANGRRL 154 (392)
T ss_pred EEEcCCCC--ceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcC---Ce-EEEEEcCCCEE
Confidence 54432221 222222111 0111234567777877777665 279999999999998765 44 77888888899
Q ss_pred EeeEEEecCCcchHHHhhhCCCC
Q 030042 153 KTKFLIGCDGIHSTVAWWLGLSE 175 (184)
Q Consensus 153 ~a~~vI~a~G~~s~~~~~~~~~~ 175 (184)
.||+||+|+|.+|.+++.++++.
T Consensus 155 ~a~~vI~AdG~~S~vr~~~g~~~ 177 (392)
T PRK09126 155 TARLLVAADSRFSATRRQLGIGA 177 (392)
T ss_pred EeCEEEEeCCCCchhhHhcCCCc
Confidence 99999999999999999987654
No 31
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.93 E-value=5e-24 Score=158.99 Aligned_cols=164 Identities=24% Similarity=0.367 Sum_probs=129.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC-----ccceeeecccHHHHHHHcCChHHHHh-cCCCccceEEEe
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG-----TGAAISFAPNAWLALDALGVSHKLAS-IYPPVNRISVTN 80 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 80 (184)
||+||||||+|+++|+.|+++|++|+|+||.+.++. .+++..+.+.+.+.++++|+++++.. ...+...+.++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 799999999999999999999999999999987543 25788999999999999999999887 666677776665
Q ss_pred cCCCceeeeecCCCCCCCC-CCeeeeHHHHHHHHHhhCC--C-CeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeE
Q 030042 81 LGTGATQETSLTGKFGDGS-GPRFIHRKKLLQTLADELP--N-GTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKF 156 (184)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~-~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~ 156 (184)
....... .+.......+ ..+.+++..+.+.|.+.+. + ++++++++|++++..+ +. +.+.+.+|+++.+|+
T Consensus 81 ~~~~~~~--~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~---~~-~~v~~~~g~~~~~~~ 154 (385)
T TIGR01988 81 GGSFGAL--HFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHS---DH-VELTLDDGQQLRARL 154 (385)
T ss_pred CCCCceE--EechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecC---Ce-eEEEECCCCEEEeeE
Confidence 4332211 2221111111 3457889999999988774 3 8999999999998765 44 778888998899999
Q ss_pred EEecCCcchHHHhhhCCCCC
Q 030042 157 LIGCDGIHSTVAWWLGLSEP 176 (184)
Q Consensus 157 vI~a~G~~s~~~~~~~~~~~ 176 (184)
||+|+|.+|.+++.++.+.+
T Consensus 155 vi~adG~~S~vr~~l~~~~~ 174 (385)
T TIGR01988 155 LVGADGANSKVRQLAGIPTT 174 (385)
T ss_pred EEEeCCCCCHHHHHcCCCcc
Confidence 99999999999999886543
No 32
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.93 E-value=5.8e-24 Score=158.53 Aligned_cols=164 Identities=26% Similarity=0.340 Sum_probs=126.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CCeEEEeccCCCCCc----cceeeecccHHHHHHHcCChHHHHhcCCCccceEEEec
Q 030042 7 DVVIIGAGIAGLATALALKRLG-VEPLVLEKSDGLRGT----GAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNL 81 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g-~~v~vie~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
||+||||||+|+++|+.|+++| ++|+|+|+.+.+... +++..+.+.+.+.++.+|+++.+.....+...+.+...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 999999998765432 46788999999999999999998777666666555432
Q ss_pred CCCceeeeecCCCCCCCC-CCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEE
Q 030042 82 GTGATQETSLTGKFGDGS-GPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFL 157 (184)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~v 157 (184)
.......+.... ...+ ..+.+++..+.+.|.+.+. +++++++++|++++..+ +. +.+.+.+|.++.||+|
T Consensus 81 ~~~~~~~~~~~~--~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~---~~-~~v~~~~g~~~~ad~v 154 (382)
T TIGR01984 81 GHFGATHLRASE--FGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQ---DY-VRVTLDNGQQLRAKLL 154 (382)
T ss_pred CCCceEEechhh--cCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC---Ce-EEEEECCCCEEEeeEE
Confidence 211111111111 1111 2356889999999988763 78999999999998765 44 7788888888999999
Q ss_pred EecCCcchHHHhhhCCCCC
Q 030042 158 IGCDGIHSTVAWWLGLSEP 176 (184)
Q Consensus 158 I~a~G~~s~~~~~~~~~~~ 176 (184)
|+|+|.+|.+++.++++.+
T Consensus 155 V~AdG~~S~vr~~l~~~~~ 173 (382)
T TIGR01984 155 IAADGANSKVRELLSIPTE 173 (382)
T ss_pred EEecCCChHHHHHcCCCCc
Confidence 9999999999999987653
No 33
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.92 E-value=1e-23 Score=157.60 Aligned_cols=168 Identities=23% Similarity=0.301 Sum_probs=125.8
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC------ccceeeecccHHHHHHHcCChHHHHhc-CCCc
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG------TGAAISFAPNAWLALDALGVSHKLASI-YPPV 73 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 73 (184)
|..+.+||+||||||+|+++|+.|++.|++|+|+|+.+.... ..+...+.+.+.+.++.+|+|+.+... ..+.
T Consensus 1 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~ 80 (391)
T PRK08020 1 MTNQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPY 80 (391)
T ss_pred CCcccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCccc
Confidence 666789999999999999999999999999999999764221 225567889999999999999888653 3344
Q ss_pred cceEEEecCCCceeeeecCCCCCCCC-CCeeeeHHHHHHHHHhhC---CCCeeeeCceEEEEeccCCCCCcceEEEEecC
Q 030042 74 NRISVTNLGTGATQETSLTGKFGDGS-GPRFIHRKKLLQTLADEL---PNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG 149 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g 149 (184)
..+..+.+..... .+.......+ ..+.+++..+.+.|.+.+ ++++++++++++++...+ +. +.|.+.+|
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~---~~-~~v~~~~g 153 (391)
T PRK08020 81 RRLETWEWETAHV---VFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDD---DG-WELTLADG 153 (391)
T ss_pred ceEEEEeCCCCeE---EecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcC---Ce-EEEEECCC
Confidence 4444443333211 1211111111 234688888888887765 378999999999998765 44 77888888
Q ss_pred cEEEeeEEEecCCcchHHHhhhCCCC
Q 030042 150 TIVKTKFLIGCDGIHSTVAWWLGLSE 175 (184)
Q Consensus 150 ~~~~a~~vI~a~G~~s~~~~~~~~~~ 175 (184)
++++||+||+|+|.+|.+|+.++++.
T Consensus 154 ~~~~a~~vI~AdG~~S~vR~~~~~~~ 179 (391)
T PRK08020 154 EEIQAKLVIGADGANSQVRQMAGIGV 179 (391)
T ss_pred CEEEeCEEEEeCCCCchhHHHcCCCc
Confidence 89999999999999999999987654
No 34
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.92 E-value=1.9e-23 Score=157.25 Aligned_cols=171 Identities=28% Similarity=0.396 Sum_probs=126.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCC----ccceEEEec
Q 030042 7 DVVIIGAGIAGLATALALKRLG-VEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPP----VNRISVTNL 81 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g-~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 81 (184)
+|+|||||++||++|+.|+++| ++|+|+||.+.....|.++.+.+.+...++.+|+.+.+...... .....+.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6999999999999999999998 69999999988888899999999999999999998877654321 122222211
Q ss_pred CCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecC
Q 030042 82 GTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCD 161 (184)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~ 161 (184)
............ ..+.....++|..|.+.|.+.++...++++++|+++...+ ++ +.+.+.+|.++++|+||+|+
T Consensus 82 ~~~~~~~~~~~~--~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~---~~-~~v~~~~g~~~~ad~vVgAD 155 (414)
T TIGR03219 82 NGSDASYLGATI--APGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQA---EE-VQVLFTDGTEYRCDLLIGAD 155 (414)
T ss_pred ecCccceeeeec--cccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecC---Cc-EEEEEcCCCEEEeeEEEECC
Confidence 111111111000 0111223578999999999998777789999999998765 45 88888899899999999999
Q ss_pred CcchHHHhhhC------CCCCcccceec
Q 030042 162 GIHSTVAWWLG------LSEPLNVNIGC 183 (184)
Q Consensus 162 G~~s~~~~~~~------~~~~~~~~~~~ 183 (184)
|.+|.+|+.+- ...|.|+++.+
T Consensus 156 G~~S~vR~~l~~~~~~~~~~p~~~g~~~ 183 (414)
T TIGR03219 156 GIKSALRDYVLQGQGQAPVRPRFSGTCA 183 (414)
T ss_pred CccHHHHHHhcCccCCCCCCccccCcEE
Confidence 99999998762 12356665543
No 35
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.92 E-value=1.6e-23 Score=156.74 Aligned_cols=169 Identities=28% Similarity=0.365 Sum_probs=125.0
Q ss_pred CccccEEEECCCHHHHHHHHHHHhC---CCCeEEEeccCCC-----CCccceeeecccHHHHHHHcCChHHHHhcCCCcc
Q 030042 3 MVEKDVVIIGAGIAGLATALALKRL---GVEPLVLEKSDGL-----RGTGAAISFAPNAWLALDALGVSHKLASIYPPVN 74 (184)
Q Consensus 3 ~~~~dv~IiGgG~~Gl~~A~~l~~~---g~~v~vie~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (184)
|+++||+||||||+|+++|+.|+++ |++|+|+|+.... +..+++..+.+.+.+.++.+|+++.+.+...+..
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~ 80 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPIT 80 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCcc
Confidence 4679999999999999999999998 9999999995322 2335788899999999999999999988776666
Q ss_pred ceEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhC---CCCeeeeCceEEEEeccCCCCCcceEEEEecCcE
Q 030042 75 RISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADEL---PNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTI 151 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~ 151 (184)
.+.+.+........+...... .......+.+..+.+.|.+.+ .+++++++++|+++...+ +. +.|.+.+|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~---~~-~~v~~~~g~~ 155 (395)
T PRK05732 81 HIHVSDRGHAGFVRLDAEDYG-VPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQ---GS-VRVTLDDGET 155 (395)
T ss_pred EEEEecCCCCceEEeehhhcC-CCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcC---Ce-EEEEECCCCE
Confidence 555433211111111111110 001124577777777777654 368999999999998764 44 7788888888
Q ss_pred EEeeEEEecCCcchHHHhhhCCCCC
Q 030042 152 VKTKFLIGCDGIHSTVAWWLGLSEP 176 (184)
Q Consensus 152 ~~a~~vI~a~G~~s~~~~~~~~~~~ 176 (184)
+.+|+||+|+|.+|.+++.+++..+
T Consensus 156 ~~a~~vI~AdG~~S~vr~~~~~~~~ 180 (395)
T PRK05732 156 LTGRLLVAADGSHSALREALGIDWQ 180 (395)
T ss_pred EEeCEEEEecCCChhhHHhhCCCcc
Confidence 9999999999999999998887644
No 36
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.92 E-value=2.7e-23 Score=161.14 Aligned_cols=168 Identities=23% Similarity=0.317 Sum_probs=125.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT 83 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
.++||+||||||+|+++|+.|+++|++|+|+|+.+.+...+++..+.+.+++.++.+|+++++.+...+..........
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~- 100 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRD- 100 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCC-
Confidence 4679999999999999999999999999999999888778899999999999999999999988776554433333322
Q ss_pred CceeeeecCCCC-CCCCCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEE--ecCc-EEEeeE
Q 030042 84 GATQETSLTGKF-GDGSGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHL--VDGT-IVKTKF 156 (184)
Q Consensus 84 ~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~--~~g~-~~~a~~ 156 (184)
.....+.+.... ...+....+.+..+.+.|.+.+. ++++++++++++++.++ +. +.+.. .++. ++++|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~---~~-v~v~~~~~~g~~~i~ad~ 176 (547)
T PRK08132 101 EEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHD---DG-VTLTVETPDGPYTLEADW 176 (547)
T ss_pred CeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcC---CE-EEEEEECCCCcEEEEeCE
Confidence 222222222111 11112334667777777777653 68999999999998775 33 44443 4454 799999
Q ss_pred EEecCCcchHHHhhhCCCCC
Q 030042 157 LIGCDGIHSTVAWWLGLSEP 176 (184)
Q Consensus 157 vI~a~G~~s~~~~~~~~~~~ 176 (184)
||+|+|.+|.+|+.++++.+
T Consensus 177 vVgADG~~S~vR~~lg~~~~ 196 (547)
T PRK08132 177 VIACDGARSPLREMLGLEFE 196 (547)
T ss_pred EEECCCCCcHHHHHcCCCCC
Confidence 99999999999999987654
No 37
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.92 E-value=6.9e-24 Score=152.71 Aligned_cols=173 Identities=36% Similarity=0.550 Sum_probs=130.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG 84 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
+-+|+|||||++|+++|+.|.|.|++|+|+|+...+.+.|+++.+.-.+++.|+..++.+.+.+.+.+...........+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~~ng~~aLkai~~~e~i~~~gip~~~~v~~~~~sg 81 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLALNGWRALKAIGLKEQIREQGIPLGGRVLIHGDSG 81 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcceeehhhHHHHHHHcccHHHHHHhcCcccceeeeecCCC
Confidence 45899999999999999999999999999999888888899999988899999999999999999988887765554454
Q ss_pred ce-eeeecCCCCCCCCCCeee-eHHHHHHHHHhhCCC--CeeeeCce----EEEEeccCCCCCcceEEEEecCcEEEeeE
Q 030042 85 AT-QETSLTGKFGDGSGPRFI-HRKKLLQTLADELPN--GTIHFSSK----IAAIDSQTHDGSSPVFIHLVDGTIVKTKF 156 (184)
Q Consensus 85 ~~-~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~--~~i~~~~~----v~~~~~~~~~~~~~~~v~~~~g~~~~a~~ 156 (184)
+. ..+.+... +.....+ .+..+...|.+..+- +++.+++. ...++.. +.. ..+++.+|.++++|+
T Consensus 82 ~~~~~~~~~~~---~~~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~---~~~-~~v~l~~g~~~~~dl 154 (420)
T KOG2614|consen 82 KEVSRILYGEP---DEYILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETL---GKK-LVVHLSDGTTVKGDL 154 (420)
T ss_pred CeeEecccCCc---hHHHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeec---ccc-cceecCCCcEEEeeE
Confidence 43 55544432 1112233 344455555555553 44443332 2222222 123 678889999999999
Q ss_pred EEecCCcchHHHhhhCCCCCcccceecC
Q 030042 157 LIGCDGIHSTVAWWLGLSEPLNVNIGCI 184 (184)
Q Consensus 157 vI~a~G~~s~~~~~~~~~~~~~~~~~~~ 184 (184)
+|+|||++|.+|++++...|.|.++.|+
T Consensus 155 ligCDGa~S~Vr~~l~~~~p~~~~~~ay 182 (420)
T KOG2614|consen 155 LIGCDGAYSKVRKWLGFKEPRYDGSQAY 182 (420)
T ss_pred EEEcCchHHHHHHHhcccCCcceeEEEE
Confidence 9999999999999999888999988874
No 38
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.92 E-value=3.8e-23 Score=154.50 Aligned_cols=164 Identities=23% Similarity=0.302 Sum_probs=122.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC--CCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL--RGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG 82 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
++||+||||||+|+++|+.|++.|++|+|+|+.+.. ....++..+.+.+.+.++++|+++.+.....+...+.+...
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~- 80 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFD- 80 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEEC-
Confidence 579999999999999999999999999999998753 23345566899999999999999999887777777776652
Q ss_pred CCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEE-ecCc--EEEeeEE
Q 030042 83 TGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHL-VDGT--IVKTKFL 157 (184)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~-~~g~--~~~a~~v 157 (184)
+.....++.... .+.....+.+..+.+.|.+.+. ++++++++++++++..+ ++. ..|.. .+|+ +++||+|
T Consensus 81 -g~~~~~~~~~~~-~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~--~~~-~~V~~~~~G~~~~i~ad~v 155 (392)
T PRK08243 81 -GRRHRIDLTELT-GGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFD--SDR-PYVTYEKDGEEHRLDCDFI 155 (392)
T ss_pred -CEEEEecccccc-CCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecC--CCc-eEEEEEcCCeEEEEEeCEE
Confidence 223334443221 1223344556677777765543 78999999999998622 133 44554 4563 7899999
Q ss_pred EecCCcchHHHhhhCCC
Q 030042 158 IGCDGIHSTVAWWLGLS 174 (184)
Q Consensus 158 I~a~G~~s~~~~~~~~~ 174 (184)
|+|||.+|.+|+.++..
T Consensus 156 VgADG~~S~vR~~~~~~ 172 (392)
T PRK08243 156 AGCDGFHGVSRASIPAG 172 (392)
T ss_pred EECCCCCCchhhhcCcc
Confidence 99999999999988654
No 39
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.91 E-value=6.9e-23 Score=153.03 Aligned_cols=165 Identities=21% Similarity=0.325 Sum_probs=124.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC-----ccceeeecccHHHHHHHcCChHHHHhc-CCCccceE
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG-----TGAAISFAPNAWLALDALGVSHKLASI-YPPVNRIS 77 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 77 (184)
+++||+||||||+|+++|+.|++.|++|+|+|+.+.+.. ..+...+.+.+.+.++.+|+++++... ..+...+.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 83 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMR 83 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEE
Confidence 368999999999999999999999999999999877543 235578899999999999999887543 33445555
Q ss_pred EEecCCCceeeeecCCCCCCCC-CCeeeeHHHHHHHHHhhCC--C-CeeeeCceEEEEeccCCCCCcceEEEEecCcEEE
Q 030042 78 VTNLGTGATQETSLTGKFGDGS-GPRFIHRKKLLQTLADELP--N-GTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVK 153 (184)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~-~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~ 153 (184)
+...... .+.+.......+ ..+.+++..+.+.|.+.+. + ++++ +++++++...+ +. +.+.+.+|.++.
T Consensus 84 ~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~---~~-~~v~~~~g~~~~ 155 (388)
T PRK07608 84 VFGDAHA---RLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDP---DA-ATLTLADGQVLR 155 (388)
T ss_pred EEECCCc---eeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecC---Ce-EEEEECCCCEEE
Confidence 5443221 222221111112 2356788899999888764 4 7777 99999998665 44 778888888899
Q ss_pred eeEEEecCCcchHHHhhhCCCCC
Q 030042 154 TKFLIGCDGIHSTVAWWLGLSEP 176 (184)
Q Consensus 154 a~~vI~a~G~~s~~~~~~~~~~~ 176 (184)
||+||+|+|.+|.+++.++...+
T Consensus 156 a~~vI~adG~~S~vr~~~~~~~~ 178 (388)
T PRK07608 156 ADLVVGADGAHSWVRSQAGIKAE 178 (388)
T ss_pred eeEEEEeCCCCchHHHhcCCCcc
Confidence 99999999999999999987654
No 40
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.90 E-value=4e-22 Score=148.83 Aligned_cols=164 Identities=18% Similarity=0.252 Sum_probs=117.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC--CccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR--GTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG 82 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
.+||+||||||+|+++|+.|++.|++|+|+|+.+... ...++..+.+.+.+.|+++|+++++.....+...+.+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~- 80 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFD- 80 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeC-
Confidence 4799999999999999999999999999999987532 2234455888899999999999999887777776766542
Q ss_pred CCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEe-cCc--EEEeeEE
Q 030042 83 TGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLV-DGT--IVKTKFL 157 (184)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~-~g~--~~~a~~v 157 (184)
.......+.... .+.....+.+..+...|.+.+. ++.++++++++.+...++ +. ..|... +|+ +++||+|
T Consensus 81 -~~~~~~~~~~~~-~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~--~~-~~V~~~~~g~~~~i~adlv 155 (390)
T TIGR02360 81 -GQRFRIDLKALT-GGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAG--DR-PYVTFERDGERHRLDCDFI 155 (390)
T ss_pred -CEEEEEeccccC-CCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCC--Cc-cEEEEEECCeEEEEEeCEE
Confidence 223334443221 1112223345566666766553 678899998888765331 33 445554 664 6899999
Q ss_pred EecCCcchHHHhhhCCC
Q 030042 158 IGCDGIHSTVAWWLGLS 174 (184)
Q Consensus 158 I~a~G~~s~~~~~~~~~ 174 (184)
|+|||.+|.+|+.++..
T Consensus 156 IGADG~~S~VR~~l~~~ 172 (390)
T TIGR02360 156 AGCDGFHGVSRASIPAE 172 (390)
T ss_pred EECCCCchhhHHhcCcc
Confidence 99999999999987543
No 41
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.90 E-value=1.8e-22 Score=152.15 Aligned_cols=168 Identities=18% Similarity=0.248 Sum_probs=107.8
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc-ceeeecccHHHHHHHcCChHHHHhc-----CCCcc
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG-AAISFAPNAWLALDALGVSHKLASI-----YPPVN 74 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 74 (184)
|++++|||+||||||+|+++|+.|++.|++|+|+||.+.++... .+-.+..... +.+ ++.+... .....
T Consensus 1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~---e~l--~~~~~~~~~~~~~~~~~ 75 (428)
T PRK10157 1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSL---EHI--IPGFADSAPVERLITHE 75 (428)
T ss_pred CCcccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhH---HHH--hhhhhhcCcccceeeee
Confidence 77778999999999999999999999999999999987765432 1212222222 221 1211111 01111
Q ss_pred ceEEEecCCCceeeeecCCCC--CCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCc
Q 030042 75 RISVTNLGTGATQETSLTGKF--GDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGT 150 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~ 150 (184)
.+.+..... .....+.... ......+.+.|.++.++|.+.+. |++++.+++|+++...+ .. +.+...++.
T Consensus 76 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~---g~-v~~v~~~g~ 149 (428)
T PRK10157 76 KLAFMTEKS--AMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRD---GK-VVGVEADGD 149 (428)
T ss_pred eEEEEcCCC--ceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeC---CE-EEEEEcCCc
Confidence 122221111 1122222111 11123467889999999998874 89999999999988654 22 333344666
Q ss_pred EEEeeEEEecCCcchHHHhhhCCCCCccc
Q 030042 151 IVKTKFLIGCDGIHSTVAWWLGLSEPLNV 179 (184)
Q Consensus 151 ~~~a~~vI~a~G~~s~~~~~~~~~~~~~~ 179 (184)
++.|++||+|+|.+|.+++.+++..+..+
T Consensus 150 ~i~A~~VI~A~G~~s~l~~~lgl~~~~~~ 178 (428)
T PRK10157 150 VIEAKTVILADGVNSILAEKLGMAKRVKP 178 (428)
T ss_pred EEECCEEEEEeCCCHHHHHHcCCCCCCCC
Confidence 89999999999999999998887654333
No 42
>PRK06996 hypothetical protein; Provisional
Probab=99.90 E-value=8.8e-22 Score=147.46 Aligned_cols=167 Identities=19% Similarity=0.166 Sum_probs=121.4
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCC----CCeEEEeccCCC--CCccceeeecccHHHHHHHcCChHHHHhcCCCcc
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLG----VEPLVLEKSDGL--RGTGAAISFAPNAWLALDALGVSHKLASIYPPVN 74 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g----~~v~vie~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (184)
|..+.+||+||||||+|+++|+.|+++| ++|+|+|+.+.. ....++..+.+.+.++|+.+|+|+. ...+..
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~---~~~~~~ 83 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPA---DATPIE 83 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchh---cCCccc
Confidence 4446789999999999999999999987 469999997643 2345889999999999999999986 334445
Q ss_pred ceEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecC---
Q 030042 75 RISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG--- 149 (184)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g--- 149 (184)
.+.++.........+...... ..+..+.+++..+.+.|.+.+. ++++++++++++++..+ ++ +++...++
T Consensus 84 ~~~~~~~~~~g~~~~~~~~~~-~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~---~~-v~v~~~~~~g~ 158 (398)
T PRK06996 84 HIHVSQRGHFGRTLIDRDDHD-VPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDA---DG-VTLALGTPQGA 158 (398)
T ss_pred EEEEecCCCCceEEecccccC-CCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecC---Ce-EEEEECCCCcc
Confidence 555543221111222222111 1113457888999999988875 78899999999997765 44 77777654
Q ss_pred cEEEeeEEEecCCc-chHHHhhhCCCC
Q 030042 150 TIVKTKFLIGCDGI-HSTVAWWLGLSE 175 (184)
Q Consensus 150 ~~~~a~~vI~a~G~-~s~~~~~~~~~~ 175 (184)
++++||+||+|||. +|.+++.++...
T Consensus 159 ~~i~a~lvIgADG~~~s~~r~~~~~~~ 185 (398)
T PRK06996 159 RTLRARIAVQAEGGLFHDQKADAGDSA 185 (398)
T ss_pred eEEeeeEEEECCCCCchHHHHHcCCCc
Confidence 58999999999996 567778776654
No 43
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.89 E-value=1.8e-21 Score=151.17 Aligned_cols=176 Identities=30% Similarity=0.381 Sum_probs=125.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC-CCc---cceeeecccHHHHHHHcCC--hHHHHhcCCCc-cce
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL-RGT---GAAISFAPNAWLALDALGV--SHKLASIYPPV-NRI 76 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~-~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~ 76 (184)
+.++|+|||||++|+++|+.|+++|++|+|+||.+.. ... ++++.+.+.+++.|+.+|+ .+++.+..... ..+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i 159 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRI 159 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccccee
Confidence 3589999999999999999999999999999997632 222 2568899999999999985 35555443322 122
Q ss_pred E-EEecCCCce-eeeec-CCCCCCCC-CCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEE
Q 030042 77 S-VTNLGTGAT-QETSL-TGKFGDGS-GPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIV 152 (184)
Q Consensus 77 ~-~~~~~~~~~-~~~~~-~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~ 152 (184)
. +.....+.. ..+.. ......+. ....+.|..|.+.|.+......++++++|++++..+ +. +++.+.+|+++
T Consensus 160 ~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~~~i~~g~~V~~I~~~~---d~-VtV~~~dG~ti 235 (668)
T PLN02927 160 NGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGEDVIRNESNVVDFEDSG---DK-VTVVLENGQRY 235 (668)
T ss_pred eeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCCCEEEcCCEEEEEEEeC---CE-EEEEECCCCEE
Confidence 1 111112211 11111 10011222 345789999999998887544478899999998765 44 78888999889
Q ss_pred EeeEEEecCCcchHHHhhh-CCCCCcccceec
Q 030042 153 KTKFLIGCDGIHSTVAWWL-GLSEPLNVNIGC 183 (184)
Q Consensus 153 ~a~~vI~a~G~~s~~~~~~-~~~~~~~~~~~~ 183 (184)
.+|+||+|+|.+|.+|+.+ +...+.|+++.|
T Consensus 236 ~aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~ 267 (668)
T PLN02927 236 EGDLLVGADGIWSKVRNNLFGRSEATYSGYTC 267 (668)
T ss_pred EcCEEEECCCCCcHHHHHhcCCCCCcccceEE
Confidence 9999999999999998866 666678887765
No 44
>PTZ00367 squalene epoxidase; Provisional
Probab=99.89 E-value=1e-21 Score=151.32 Aligned_cols=167 Identities=20% Similarity=0.205 Sum_probs=119.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC-CCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG-LRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG 82 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
..+||+|||||++|+++|+.|++.|++|+|+|+... ......+..+.+.+.+.|+++|+++.+.....+..++.+++.+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l~~i~~~~~~~~v~~~~ 111 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECAEGIGMPCFGYVVFDHK 111 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhHhhcCcceeeeEEEECC
Confidence 468999999999999999999999999999999762 2223456678999999999999999988877777777776643
Q ss_pred CCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhC-----CCCeeeeCceEEEEeccCCC----CCcceEEEEec-----
Q 030042 83 TGATQETSLTGKFGDGSGPRFIHRKKLLQTLADEL-----PNGTIHFSSKIAAIDSQTHD----GSSPVFIHLVD----- 148 (184)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-----~~~~i~~~~~v~~~~~~~~~----~~~~~~v~~~~----- 148 (184)
. .....++. .+.....+++..+.+.|.+.+ ++++++ +.+|+++...+.. ..+ +++...+
T Consensus 112 G-~~~~i~~~----~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~-~~~v~~l~~~~~~~~~~v~g-V~~~~~~~~~~~ 184 (567)
T PTZ00367 112 G-KQVKLPYG----AGASGVSFHFGDFVQNLRSHVFHNCQDNVTML-EGTVNSLLEEGPGFSERAYG-VEYTEAEKYDVP 184 (567)
T ss_pred C-CEEEecCC----CCCceeEeEHHHHHHHHHHHHHhhcCCCcEEE-EeEEEEeccccCccCCeeEE-EEEecCCccccc
Confidence 2 22223332 112233556777777777655 377775 4578887654321 112 4444433
Q ss_pred ------------------CcEEEeeEEEecCCcchHHHhhhCCCCCc
Q 030042 149 ------------------GTIVKTKFLIGCDGIHSTVAWWLGLSEPL 177 (184)
Q Consensus 149 ------------------g~~~~a~~vI~a~G~~s~~~~~~~~~~~~ 177 (184)
+++++||+||+|||.+|.+|+.++...+.
T Consensus 185 ~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~ 231 (567)
T PTZ00367 185 ENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPA 231 (567)
T ss_pred ccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCC
Confidence 56899999999999999999999765443
No 45
>PLN02985 squalene monooxygenase
Probab=99.89 E-value=9.5e-22 Score=150.64 Aligned_cols=168 Identities=21% Similarity=0.251 Sum_probs=120.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhc-CCCccceEEEecC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASI-YPPVNRISVTNLG 82 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
..+||+|||||++|+++|+.|++.|++|+|+||.......+.+..+.+.+.+.++++|+++.+... ..+...+..+.
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~-- 119 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYK-- 119 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEE--
Confidence 468999999999999999999999999999999865555567888999999999999999988764 33455555543
Q ss_pred CCceeeeecCCCC---CCCCCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCc-ceEEEEecCc--EEE
Q 030042 83 TGATQETSLTGKF---GDGSGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSS-PVFIHLVDGT--IVK 153 (184)
Q Consensus 83 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~-~~~v~~~~g~--~~~ 153 (184)
+++....++.... ........+++.++.+.|.+.+. +++++.+ +++++...+ +.. .+++.+.+|+ ++.
T Consensus 120 ~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~--~~v~gV~~~~~dG~~~~~~ 196 (514)
T PLN02985 120 DGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEK--GVIKGVTYKNSAGEETTAL 196 (514)
T ss_pred CCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcC--CEEEEEEEEcCCCCEEEEE
Confidence 2222233333211 11123357788899999888763 6777755 677776544 222 1344445664 466
Q ss_pred eeEEEecCCcchHHHhhhCCCCC
Q 030042 154 TKFLIGCDGIHSTVAWWLGLSEP 176 (184)
Q Consensus 154 a~~vI~a~G~~s~~~~~~~~~~~ 176 (184)
||+||+|||.+|.+|+.++.+.+
T Consensus 197 AdLVVgADG~~S~vR~~l~~~~~ 219 (514)
T PLN02985 197 APLTVVCDGCYSNLRRSLNDNNA 219 (514)
T ss_pred CCEEEECCCCchHHHHHhccCCC
Confidence 99999999999999999876543
No 46
>PRK10015 oxidoreductase; Provisional
Probab=99.89 E-value=9.9e-22 Score=148.01 Aligned_cols=168 Identities=18% Similarity=0.231 Sum_probs=105.9
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc-ceeeecccHHHHHHHcCChHH-HHhcCCCccceEE
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG-AAISFAPNAWLALDALGVSHK-LASIYPPVNRISV 78 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 78 (184)
|++.+|||+||||||+|+++|+.|++.|++|+||||.+.++... ++..+.....+.+.. ++... ..+.......+.+
T Consensus 1 m~~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~-~~~~~~~i~~~~~~~~~~~ 79 (429)
T PRK10015 1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIP-GFAASAPVERKVTREKISF 79 (429)
T ss_pred CCccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcc-cccccCCccccccceeEEE
Confidence 78778999999999999999999999999999999988765432 222222222222200 11100 0011111122222
Q ss_pred EecCCCceeeeecCCCCC--CCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEe
Q 030042 79 TNLGTGATQETSLTGKFG--DGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKT 154 (184)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a 154 (184)
..... ....++..... .....+.+.|..+.++|.+.+. +++++.+++|+++...+ .. +.....++.++.|
T Consensus 80 ~~~~~--~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~---~~-v~~v~~~~~~i~A 153 (429)
T PRK10015 80 LTEES--AVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREG---NK-VTGVQAGDDILEA 153 (429)
T ss_pred EeCCC--ceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeC---CE-EEEEEeCCeEEEC
Confidence 22111 12222221111 1113567889999999988774 89999999999988654 22 3322234457999
Q ss_pred eEEEecCCcchHHHhhhCCCC
Q 030042 155 KFLIGCDGIHSTVAWWLGLSE 175 (184)
Q Consensus 155 ~~vI~a~G~~s~~~~~~~~~~ 175 (184)
+.||+|+|.+|.+++.+++..
T Consensus 154 ~~VI~AdG~~s~v~~~lg~~~ 174 (429)
T PRK10015 154 NVVILADGVNSMLGRSLGMVP 174 (429)
T ss_pred CEEEEccCcchhhhcccCCCc
Confidence 999999999999998887743
No 47
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.88 E-value=5.3e-21 Score=144.49 Aligned_cols=163 Identities=17% Similarity=0.240 Sum_probs=108.7
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEe
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTN 80 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
|+.+++||+||||||+|+++|+.|++.|++|+|+|+... ....++..++ ...++++++++.+... ....+.+..
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~-~~k~cgg~i~---~~~l~~lgl~~~~~~~--~i~~~~~~~ 108 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD-NAKPCGGAIP---LCMVGEFDLPLDIIDR--KVTKMKMIS 108 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC-CCCCcccccc---HhHHhhhcCcHHHHHH--HhhhheEec
Confidence 455679999999999999999999999999999999753 2233444443 3566777877665442 233344443
Q ss_pred cCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEec-------C--
Q 030042 81 LGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVD-------G-- 149 (184)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~-------g-- 149 (184)
+.. ....+...........+++|..+.++|.+.+. |++++.+ +++++...++.++. +.|.+.+ |
T Consensus 109 p~~---~~v~~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~-~~v~~~~~~~~~~~g~~ 183 (450)
T PLN00093 109 PSN---VAVDIGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGP-YVIHYTSYDSGSGAGTP 183 (450)
T ss_pred CCc---eEEEecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCc-EEEEEEeccccccCCCc
Confidence 222 12222211111223346899999999998774 7888765 57777643211123 5554422 3
Q ss_pred cEEEeeEEEecCCcchHHHhhhCCC
Q 030042 150 TIVKTKFLIGCDGIHSTVAWWLGLS 174 (184)
Q Consensus 150 ~~~~a~~vI~a~G~~s~~~~~~~~~ 174 (184)
.+++||+||+|||.+|.+++.++.+
T Consensus 184 ~~v~a~~VIgADG~~S~vrr~lg~~ 208 (450)
T PLN00093 184 KTLEVDAVIGADGANSRVAKDIDAG 208 (450)
T ss_pred cEEEeCEEEEcCCcchHHHHHhCCC
Confidence 4799999999999999999998865
No 48
>PRK11445 putative oxidoreductase; Provisional
Probab=99.87 E-value=5.9e-21 Score=140.73 Aligned_cols=156 Identities=22% Similarity=0.232 Sum_probs=110.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC----CccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEe
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR----GTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTN 80 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
++||+||||||+|+++|+.|++. ++|+|+|+.+... ...++..+++.+.+.++.+|++........+ ....
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~-~~~~--- 75 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANP-QIFA--- 75 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeecc-ccce---
Confidence 37999999999999999999999 9999999987543 2336778999999999999886321110000 0000
Q ss_pred cCCCceeeeecCC-C-CCCCCCCeeeeHHHHHHHHHhhCC-CCeeeeCceEEEEeccCCCCCcceEEEE-ecCc--EEEe
Q 030042 81 LGTGATQETSLTG-K-FGDGSGPRFIHRKKLLQTLADELP-NGTIHFSSKIAAIDSQTHDGSSPVFIHL-VDGT--IVKT 154 (184)
Q Consensus 81 ~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~l~~~~~-~~~i~~~~~v~~~~~~~~~~~~~~~v~~-~~g~--~~~a 154 (184)
.....+.. . ...+.....++|.++.+.|.+..+ ++++++++++++++..+ ++ +.+.+ .+|+ +++|
T Consensus 76 -----~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~---~~-~~v~~~~~g~~~~i~a 146 (351)
T PRK11445 76 -----VKTIDLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWRED---DG-YHVIFRADGWEQHITA 146 (351)
T ss_pred -----eeEecccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcC---CE-EEEEEecCCcEEEEEe
Confidence 01111111 0 011223346899999999988654 89999999999998765 44 66664 4564 6899
Q ss_pred eEEEecCCcchHHHhhhCCC
Q 030042 155 KFLIGCDGIHSTVAWWLGLS 174 (184)
Q Consensus 155 ~~vI~a~G~~s~~~~~~~~~ 174 (184)
|+||+|||.+|.+|+.++..
T Consensus 147 ~~vV~AdG~~S~vr~~l~~~ 166 (351)
T PRK11445 147 RYLVGADGANSMVRRHLYPD 166 (351)
T ss_pred CEEEECCCCCcHHhHHhcCC
Confidence 99999999999999887643
No 49
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.87 E-value=8.5e-21 Score=141.90 Aligned_cols=157 Identities=25% Similarity=0.272 Sum_probs=110.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccce-eeecccHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAA-ISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG 82 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
++|||+|||+||+|+++|+.|++.|.+|+|+||...++....+ ..+.+..++.+....... .........++..
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~----i~~~v~~~~~~~~- 76 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEE----IERKVTGARIYFP- 76 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchh----hheeeeeeEEEec-
Confidence 5799999999999999999999999999999999988776554 555555444432221101 1111222222222
Q ss_pred CCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEec
Q 030042 83 TGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGC 160 (184)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a 160 (184)
.....+.... ...+.++|..+.++|.+.+. |++++.++++.++..++ ++.+.....++.+++||+||+|
T Consensus 77 -~~~~~~~~~~-----~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~---~~~~~~~~~~~~e~~a~~vI~A 147 (396)
T COG0644 77 -GEKVAIEVPV-----GEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIRED---DGVVVGVRAGDDEVRAKVVIDA 147 (396)
T ss_pred -CCceEEecCC-----CceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeC---CcEEEEEEcCCEEEEcCEEEEC
Confidence 1111111111 24678999999999998885 89999999999999887 3313333344468999999999
Q ss_pred CCcchHHHhhhCCC
Q 030042 161 DGIHSTVAWWLGLS 174 (184)
Q Consensus 161 ~G~~s~~~~~~~~~ 174 (184)
+|.+|.+++.++..
T Consensus 148 dG~~s~l~~~lg~~ 161 (396)
T COG0644 148 DGVNSALARKLGLK 161 (396)
T ss_pred CCcchHHHHHhCCC
Confidence 99999999999877
No 50
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.87 E-value=1.7e-20 Score=135.23 Aligned_cols=155 Identities=25% Similarity=0.305 Sum_probs=109.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
|||+|||||++|+++|+.|++.|++|+|+|+...+...+++..+.+.+++.+...+.. . ........+... .+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~----~~~~~~~~~~~~-~~~ 74 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLEL-I----VNLVRGARFFSP-NGD 74 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchh-h----hhheeeEEEEcC-CCc
Confidence 6999999999999999999999999999999987766667777777777766544321 1 111122222221 111
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEec-CcEEEeeEEEecCC
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVD-GTIVKTKFLIGCDG 162 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~-g~~~~a~~vI~a~G 162 (184)
...... .......+++.++.+.|.+.+. +++++++++++++...+ +. +.+...+ +.++++|+||+|+|
T Consensus 75 ~~~~~~-----~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~---~~-~~~~~~~~~~~~~a~~vv~a~G 145 (295)
T TIGR02032 75 SVEIPI-----ETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHD---DR-VVVIVRGGEGTVTAKIVIGADG 145 (295)
T ss_pred EEEecc-----CCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeC---CE-EEEEEcCccEEEEeCEEEECCC
Confidence 111111 1224567899999999988875 79999999999998765 33 4454443 45899999999999
Q ss_pred cchHHHhhhCCCC
Q 030042 163 IHSTVAWWLGLSE 175 (184)
Q Consensus 163 ~~s~~~~~~~~~~ 175 (184)
.+|.+++.+++..
T Consensus 146 ~~s~~~~~~~~~~ 158 (295)
T TIGR02032 146 SRSIVAKKLGLRK 158 (295)
T ss_pred cchHHHHhcCCCC
Confidence 9999998887653
No 51
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.85 E-value=5.9e-20 Score=137.21 Aligned_cols=154 Identities=20% Similarity=0.355 Sum_probs=106.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecc-CCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKS-DGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG 84 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
|||+||||||+|+++|+.|++.|++|+|+|+. +.+. .++..+++ ..++.+++.+++... .+....+..+...
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~--~cg~~i~~---~~l~~l~i~~~~~~~--~~~~~~~~~~~~~ 73 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIK--PCGGAIPP---CLIEEFDIPDSLIDR--RVTQMRMISPSRV 73 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcC--cCcCCcCH---hhhhhcCCchHHHhh--hcceeEEEcCCCc
Confidence 69999999999999999999999999999997 3332 24444443 456777777665543 3445555443321
Q ss_pred ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEec------C--cEEEe
Q 030042 85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVD------G--TIVKT 154 (184)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~------g--~~~~a 154 (184)
........ .......+++..+.++|.+.+. |++++.. +|+++...+ +. +.+.+.+ + .++.|
T Consensus 74 -~~~~~~~~---~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~---~~-~~v~~~~~~~~~~~~~~~i~a 144 (388)
T TIGR02023 74 -PIKVTIPS---EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDR---DG-VTLTYRTPKKGAGGEKGSVEA 144 (388)
T ss_pred -eeeeccCC---CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcC---Ce-EEEEEEeccccCCCcceEEEe
Confidence 11111110 1112236899999999988764 7888654 688987765 33 5565542 2 47999
Q ss_pred eEEEecCCcchHHHhhhCCCC
Q 030042 155 KFLIGCDGIHSTVAWWLGLSE 175 (184)
Q Consensus 155 ~~vI~a~G~~s~~~~~~~~~~ 175 (184)
|+||+|+|.+|.+++.++++.
T Consensus 145 ~~VI~AdG~~S~v~r~lg~~~ 165 (388)
T TIGR02023 145 DVVIGADGANSPVAKELGLPK 165 (388)
T ss_pred CEEEECCCCCcHHHHHcCCCC
Confidence 999999999999999988763
No 52
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.84 E-value=3.1e-19 Score=133.55 Aligned_cols=158 Identities=16% Similarity=0.253 Sum_probs=103.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
+||+||||||+|+++|+.|++.|++|+|+|+..... ..++..++ ...++++++++.+... ....+.+..+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~-~~cg~~i~---~~~l~~~g~~~~~~~~--~i~~~~~~~p~~-- 72 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA-KPCGGAIP---LCMVDEFALPRDIIDR--RVTKMKMISPSN-- 72 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC-CCcccccc---HhhHhhccCchhHHHh--hhceeEEecCCc--
Confidence 599999999999999999999999999999975432 22344443 3556777777655442 233344333222
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEE--ec-----C--cEEEe
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHL--VD-----G--TIVKT 154 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~--~~-----g--~~~~a 154 (184)
....+............++|..+.++|.+.+. |++++.+ +++++....+.++. +.|.. .+ | .+++|
T Consensus 73 -~~~~~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~-~~~~i~~~~~~~~~-~~v~~~~~~~~~~~g~~~~i~a 149 (398)
T TIGR02028 73 -IAVDIGRTLKEHEYIGMLRREVLDSFLRRRAADAGATLING-LVTKLSLPADADDP-YTLHYISSDSGGPSGTRCTLEV 149 (398)
T ss_pred -eEEEeccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcc-eEEEEEeccCCCce-EEEEEeeccccccCCCccEEEe
Confidence 22222211111112346899999999998875 8888777 47777542211233 44442 22 3 47999
Q ss_pred eEEEecCCcchHHHhhhCCC
Q 030042 155 KFLIGCDGIHSTVAWWLGLS 174 (184)
Q Consensus 155 ~~vI~a~G~~s~~~~~~~~~ 174 (184)
++||+|||.+|.+++.++.+
T Consensus 150 ~~VIgADG~~S~v~~~~g~~ 169 (398)
T TIGR02028 150 DAVIGADGANSRVAKEIDAG 169 (398)
T ss_pred CEEEECCCcchHHHHHhCCC
Confidence 99999999999999998865
No 53
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.83 E-value=1e-19 Score=131.19 Aligned_cols=163 Identities=24% Similarity=0.242 Sum_probs=105.6
Q ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc------cc-eeeecccHHHHHHHcCC-hHHHH---hcCC
Q 030042 3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT------GA-AISFAPNAWLALDALGV-SHKLA---SIYP 71 (184)
Q Consensus 3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~------~~-~~~~~~~~~~~~~~~~~-~~~~~---~~~~ 71 (184)
|+.+||+||||||+|+++|..++++|.+|+|||+.+.++.. |+ ...-.....+++....- -..+. ..+.
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft 80 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFT 80 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCC
Confidence 46799999999999999999999999999999999887542 11 22222223344443320 01221 2222
Q ss_pred CccceEEEecCCCceeeeecCCCCCCCC-CCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEec
Q 030042 72 PVNRISVTNLGTGATQETSLTGKFGDGS-GPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVD 148 (184)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~ 148 (184)
+.+.+.+.....- .+.... .|. .......+.+.+.|..+++ +++++.+++|.+++..+ .. ..+.+++
T Consensus 81 ~~d~i~~~e~~Gi---~~~e~~---~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~---~~-f~l~t~~ 150 (408)
T COG2081 81 PEDFIDWVEGLGI---ALKEED---LGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD---SG-FRLDTSS 150 (408)
T ss_pred HHHHHHHHHhcCC---eeEEcc---CceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC---ce-EEEEcCC
Confidence 2222222111111 111111 111 1222445778888888875 89999999999999986 45 8999999
Q ss_pred CcEEEeeEEEecCCcch-----------HHHhhhCCCC
Q 030042 149 GTIVKTKFLIGCDGIHS-----------TVAWWLGLSE 175 (184)
Q Consensus 149 g~~~~a~~vI~a~G~~s-----------~~~~~~~~~~ 175 (184)
|++++||.+|+|+|+.| ++++.+|...
T Consensus 151 g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~I 188 (408)
T COG2081 151 GETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGHTI 188 (408)
T ss_pred CCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCCcc
Confidence 98999999999999544 3567777653
No 54
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.80 E-value=1.5e-18 Score=128.31 Aligned_cols=170 Identities=25% Similarity=0.392 Sum_probs=104.3
Q ss_pred CccccEEEECCCHHHHHHHHHHHhCC--CCeEEEeccCCCCCcc---------ceeeecccHHH-HHHHcC------ChH
Q 030042 3 MVEKDVVIIGAGIAGLATALALKRLG--VEPLVLEKSDGLRGTG---------AAISFAPNAWL-ALDALG------VSH 64 (184)
Q Consensus 3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g--~~v~vie~~~~~~~~~---------~~~~~~~~~~~-~~~~~~------~~~ 64 (184)
|.++||+|||||+.|+++|++|+++. ++|+|+||.+.++... .+..+.+.... -+...| +..
T Consensus 1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~k 80 (429)
T COG0579 1 MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICK 80 (429)
T ss_pred CCceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHH
Confidence 35799999999999999999999998 8999999987653211 12223332110 011000 000
Q ss_pred HHHhcCCCccceEEEecC-------------------------CCceeeee--cC--CC-CCCCCCCeeeeHHHHHHHHH
Q 030042 65 KLASIYPPVNRISVTNLG-------------------------TGATQETS--LT--GK-FGDGSGPRFIHRKKLLQTLA 114 (184)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~--~~--~~-~~~~~~~~~~~~~~l~~~l~ 114 (184)
++.-.+.....+.+.+.. ..+...+. .. .. ..+-+....++..++...+.
T Consensus 81 q~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~ 160 (429)
T COG0579 81 QLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALA 160 (429)
T ss_pred HhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHH
Confidence 000000011111111111 11111111 00 00 01223455778888888888
Q ss_pred hhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcE-EEeeEEEecCCcch-HHHhhhCCCC
Q 030042 115 DELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTI-VKTKFLIGCDGIHS-TVAWWLGLSE 175 (184)
Q Consensus 115 ~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~-~~a~~vI~a~G~~s-~~~~~~~~~~ 175 (184)
+.+. |+++++|++|+++++.++ .. +.+.+.+|++ ++|++||+|.|..+ +++++++++.
T Consensus 161 e~a~~~g~~i~ln~eV~~i~~~~d--g~-~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~ 222 (429)
T COG0579 161 EEAQANGVELRLNTEVTGIEKQSD--GV-FVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPE 222 (429)
T ss_pred HHHHHcCCEEEecCeeeEEEEeCC--ce-EEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCc
Confidence 8774 899999999999999872 24 7788888865 99999999999988 6899998775
No 55
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.78 E-value=2.6e-18 Score=120.99 Aligned_cols=136 Identities=21% Similarity=0.271 Sum_probs=90.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc--ceeee-----cccHHHHHHHcCChHHHHhcCCCccce
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG--AAISF-----APNAWLALDALGVSHKLASIYPPVNRI 76 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (184)
.++||+||||||+|+++|+.|++.|++|+|+|+...+++.- .+..+ .+...++++++++ ++.
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv---------~~~-- 92 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGI---------RYK-- 92 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCC---------Cce--
Confidence 46899999999999999999999999999999988765421 11111 1112222222221 110
Q ss_pred EEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEe-------
Q 030042 77 SVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLV------- 147 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~------- 147 (184)
.. ....+.+++..+...|.+.+. +++++++++|+++...++ +.. ..+...
T Consensus 93 ---~~----------------~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~-g~V-~Gvv~~~~~v~~~ 151 (257)
T PRK04176 93 ---EV----------------EDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILRED-PRV-AGVVINWTPVEMA 151 (257)
T ss_pred ---ee----------------cCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCC-CcE-EEEEEcccccccc
Confidence 00 011235677888888887764 899999999999987542 122 222221
Q ss_pred ----cCcEEEeeEEEecCCcchHHHhhh
Q 030042 148 ----DGTIVKTKFLIGCDGIHSTVAWWL 171 (184)
Q Consensus 148 ----~g~~~~a~~vI~a~G~~s~~~~~~ 171 (184)
+..+++|++||+|||+++.+.+.+
T Consensus 152 g~~~~~~~i~Ak~VI~ATG~~a~v~~~l 179 (257)
T PRK04176 152 GLHVDPLTIEAKAVVDATGHDAEVVSVL 179 (257)
T ss_pred CCCCCcEEEEcCEEEEEeCCCcHHHHHH
Confidence 224799999999999999876655
No 56
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.77 E-value=1.6e-17 Score=116.63 Aligned_cols=136 Identities=22% Similarity=0.341 Sum_probs=88.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccce--eee-----cccHHHHHHHcCChHHHHhcCCCccce
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAA--ISF-----APNAWLALDALGVSHKLASIYPPVNRI 76 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (184)
.++||+||||||+|+++|+.|++.|.+|+|+||...+++...+ ..+ .....++++++++.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~------------- 86 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIR------------- 86 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCC-------------
Confidence 4689999999999999999999999999999999876533211 111 11112222222110
Q ss_pred EEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEe-------
Q 030042 77 SVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLV------- 147 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~------- 147 (184)
+. ..+......++.++.+.|.+.+. +++++++++|.++...++.... ..|.+.
T Consensus 87 --------------~~---~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V-~GVv~~~~~v~~~ 148 (254)
T TIGR00292 87 --------------YE---DEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGV-AGVVINWSAIELA 148 (254)
T ss_pred --------------ee---eccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCce-EEEEeCCcccccc
Confidence 00 01112234567788888877664 8999999999999876521012 333332
Q ss_pred ----cCcEEEeeEEEecCCcchHHHhh
Q 030042 148 ----DGTIVKTKFLIGCDGIHSTVAWW 170 (184)
Q Consensus 148 ----~g~~~~a~~vI~a~G~~s~~~~~ 170 (184)
+..++.|++||.|||+.+.+.+.
T Consensus 149 g~~~d~~~i~Ak~VVdATG~~a~v~~~ 175 (254)
T TIGR00292 149 GLHVDPLTQRSRVVVDATGHDAEIVAV 175 (254)
T ss_pred CCCCCCEEEEcCEEEEeecCCchHHHH
Confidence 12478999999999988765443
No 57
>PLN02463 lycopene beta cyclase
Probab=99.75 E-value=5e-17 Score=122.63 Aligned_cols=144 Identities=18% Similarity=0.191 Sum_probs=97.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG 84 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
.+||+||||||+|+++|+.|++.|++|.|+|+.+.... .+....+ ...++.+++.+.+.... ....+......
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~-p~~~g~w---~~~l~~lgl~~~l~~~w---~~~~v~~~~~~ 100 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIW-PNNYGVW---VDEFEALGLLDCLDTTW---PGAVVYIDDGK 100 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchh-ccccchH---HHHHHHCCcHHHHHhhC---CCcEEEEeCCC
Confidence 58999999999999999999999999999999653211 1111111 23456666665553321 11111111110
Q ss_pred ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCC
Q 030042 85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDG 162 (184)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G 162 (184)
. ......+..+++.++.+.|.+.+. +++++ ..+|++++..+ +. +.|.+++|+++.|++||+|+|
T Consensus 101 -~--------~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~---~~-~~V~~~dG~~i~A~lVI~AdG 166 (447)
T PLN02463 101 -K--------KDLDRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEE---SK-SLVVCDDGVKIQASLVLDATG 166 (447)
T ss_pred -C--------ccccCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcC---Ce-EEEEECCCCEEEcCEEEECcC
Confidence 0 011123456889999999988775 67775 57899988765 44 778888998999999999999
Q ss_pred cchHHHh
Q 030042 163 IHSTVAW 169 (184)
Q Consensus 163 ~~s~~~~ 169 (184)
.+|.+.+
T Consensus 167 ~~s~l~~ 173 (447)
T PLN02463 167 FSRCLVQ 173 (447)
T ss_pred CCcCccC
Confidence 9987643
No 58
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.73 E-value=6.2e-17 Score=116.05 Aligned_cols=167 Identities=22% Similarity=0.206 Sum_probs=117.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT 83 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
..+||+|||+|++|.++|+.|++.|.+|.||||+-.....--|..+.|.....|.++|+.+-++....+.-.-..... +
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk-~ 122 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFK-D 122 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEe-C
Confidence 357999999999999999999999999999999876555555667788889999999999888776554332222222 3
Q ss_pred CceeeeecCCCCCCC-CCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEecCc--EEEeeEE
Q 030042 84 GATQETSLTGKFGDG-SGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGT--IVKTKFL 157 (184)
Q Consensus 84 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~--~~~a~~v 157 (184)
++....+|+.....+ +.....+..++.+.|++.+. ++++..+ +|.++...++...+ ++.+++.|+ +..|-.-
T Consensus 123 gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLlee~gvvkG-V~yk~k~gee~~~~ApLT 200 (509)
T KOG1298|consen 123 GKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLEEEGVVKG-VTYKNKEGEEVEAFAPLT 200 (509)
T ss_pred CceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeee-eHHHHHhccCeEEe-EEEecCCCceEEEecceE
Confidence 334445554332222 23456667789999988873 7766655 56666655521223 555555554 5668889
Q ss_pred EecCCcchHHHhhhCC
Q 030042 158 IGCDGIHSTVAWWLGL 173 (184)
Q Consensus 158 I~a~G~~s~~~~~~~~ 173 (184)
|+|||..|.+|+.+.-
T Consensus 201 vVCDGcfSnlRrsL~~ 216 (509)
T KOG1298|consen 201 VVCDGCFSNLRRSLCD 216 (509)
T ss_pred EEecchhHHHHHHhcC
Confidence 9999999999998854
No 59
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.73 E-value=3.5e-18 Score=127.23 Aligned_cols=139 Identities=22% Similarity=0.274 Sum_probs=75.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc------cceeeec----------------ccHHHHHHHcCC-
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT------GAAISFA----------------PNAWLALDALGV- 62 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~------~~~~~~~----------------~~~~~~~~~~~~- 62 (184)
|||+|||||++|+++|+.|++.|.+|+|+||++..+.. |+..... .-....++.+..
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 79999999999999999999999999999999877421 2211100 011222333321
Q ss_pred --hHHHHhcCCCccceEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCC
Q 030042 63 --SHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDG 138 (184)
Q Consensus 63 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~ 138 (184)
...+.+.+.+ .....++ ..++ .......+.+.|.+.+. +++++++++|.+++..+
T Consensus 81 d~~~ff~~~Gv~-----~~~~~~g--r~fP-----------~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~--- 139 (409)
T PF03486_consen 81 DLIAFFEELGVP-----TKIEEDG--RVFP-----------KSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE--- 139 (409)
T ss_dssp HHHHHHHHTT-------EEE-STT--EEEE-----------TT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET---
T ss_pred HHHHHHHhcCCe-----EEEcCCC--EECC-----------CCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC---
Confidence 1222222221 1110110 1111 12235677777777765 89999999999999876
Q ss_pred CcceEEEEecCcEEEeeEEEecCCcch
Q 030042 139 SSPVFIHLVDGTIVKTKFLIGCDGIHS 165 (184)
Q Consensus 139 ~~~~~v~~~~g~~~~a~~vI~a~G~~s 165 (184)
+..+.|+++++..+.||.||+|+|+.|
T Consensus 140 ~~~f~v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 140 DGVFGVKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp TEEEEEEETTTEEEEESEEEE----SS
T ss_pred CceeEeeccCcccccCCEEEEecCCCC
Confidence 323888887778999999999999754
No 60
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.73 E-value=6.6e-17 Score=120.46 Aligned_cols=158 Identities=19% Similarity=0.226 Sum_probs=91.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccce-----e---eec--ccHHH-HHHHcCChHHHHhcCC-
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAA-----I---SFA--PNAWL-ALDALGVSHKLASIYP- 71 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~-----~---~~~--~~~~~-~~~~~~~~~~~~~~~~- 71 (184)
+++||+|||||++|+++|++|+++|.+|+|+|+.......+.+ . .+. +...+ ..+....+.++.+...
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~ 81 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPHQQGSSHGDTRIIRHAYGEGPAYVPLVLRAQELWRELERESGE 81 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCCCCCcCcCCcceEEEeeccCCchhhHHHHHHHHHHHHHHHHhCC
Confidence 4689999999999999999999999999999997644211111 1 011 11111 1122223333322110
Q ss_pred C-c--cceEEEecCCCce--------------eee--------ecCCCC-------CCCCCCeeeeHHHHHHHHHhhCC-
Q 030042 72 P-V--NRISVTNLGTGAT--------------QET--------SLTGKF-------GDGSGPRFIHRKKLLQTLADELP- 118 (184)
Q Consensus 72 ~-~--~~~~~~~~~~~~~--------------~~~--------~~~~~~-------~~~~~~~~~~~~~l~~~l~~~~~- 118 (184)
. + .+.........+. .++ .++... ...+...++++.++...+.+.+.
T Consensus 82 ~~~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~P~l~~~~~~~a~~~~~~g~v~p~~~~~~~~~~~~~ 161 (376)
T PRK11259 82 PLFVRTGVLNLGPADSDFLANSIRSARQHGLPHEVLDAAEIRRRFPQFRLPDGYIALFEPDGGFLRPELAIKAHLRLARE 161 (376)
T ss_pred ccEEEECCEEEcCCCCHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCCcCCCCceEEEcCCCCEEcHHHHHHHHHHHHHH
Confidence 0 0 0111111000000 000 000000 01122346777888877766653
Q ss_pred -CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH
Q 030042 119 -NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST 166 (184)
Q Consensus 119 -~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~ 166 (184)
+++++.+++|++++..+ .. +.|.+++| ++.+|.||+|+|+++.
T Consensus 162 ~gv~i~~~~~v~~i~~~~---~~-~~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 162 AGAELLFNEPVTAIEADG---DG-VTVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred CCCEEECCCEEEEEEeeC---Ce-EEEEeCCC-EEEeeEEEEecCcchh
Confidence 89999999999998865 44 77888887 7999999999999864
No 61
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.72 E-value=9.1e-17 Score=119.88 Aligned_cols=169 Identities=20% Similarity=0.235 Sum_probs=99.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC--Cccc---eee---ecccH--HHHHHHcCChHHHHhcC-CC--
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR--GTGA---AIS---FAPNA--WLALDALGVSHKLASIY-PP-- 72 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~--~~~~---~~~---~~~~~--~~~~~~~~~~~~~~~~~-~~-- 72 (184)
|||+|||||++|+++|++|+++|.+|+|+|+..... +.+. +.. +.... .-..+...+|..+.+.. ..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~ 80 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPMMLECYQLWAQLEKEAGTKLH 80 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCCCCCCCCeeeeeccCchhHhHHHHHHHHHHHHHHHHhCCeeE
Confidence 699999999999999999999999999999975432 1111 110 11110 11112223344333211 00
Q ss_pred -ccceEEEecCCCc--------------eee--------eecCCCC-------CCCCCCeeeeHHHHHHHHHhhCC--CC
Q 030042 73 -VNRISVTNLGTGA--------------TQE--------TSLTGKF-------GDGSGPRFIHRKKLLQTLADELP--NG 120 (184)
Q Consensus 73 -~~~~~~~~~~~~~--------------~~~--------~~~~~~~-------~~~~~~~~~~~~~l~~~l~~~~~--~~ 120 (184)
..+.......+.. ..+ ..++... ...+...++++..+.+.|.+.+. ++
T Consensus 81 ~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~~~g~ 160 (380)
T TIGR01377 81 RQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELAEAHGA 160 (380)
T ss_pred eecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHHHHHHcCC
Confidence 0111111111000 000 0000000 01123357788888888877654 89
Q ss_pred eeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch-HHHhhhCCCCCccc
Q 030042 121 TIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS-TVAWWLGLSEPLNV 179 (184)
Q Consensus 121 ~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s-~~~~~~~~~~~~~~ 179 (184)
+++.+++|+++...+ .. +.|.+.++ ++.+|.||+|+|.++ .+++.+++..|..+
T Consensus 161 ~~~~~~~V~~i~~~~---~~-~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g~~~~~~~ 215 (380)
T TIGR01377 161 TVRDGTKVVEIEPTE---LL-VTVKTTKG-SYQANKLVVTAGAWTSKLLSPLGIEIPLQP 215 (380)
T ss_pred EEECCCeEEEEEecC---Ce-EEEEeCCC-EEEeCEEEEecCcchHHHhhhcccCCCceE
Confidence 999999999998764 44 66777766 799999999999875 67887777666443
No 62
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.72 E-value=3.4e-16 Score=117.27 Aligned_cols=165 Identities=23% Similarity=0.332 Sum_probs=99.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCC--Cccceee-------ecccH-HHHH--HHcCChHHHHh-c
Q 030042 5 EKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLR--GTGAAIS-------FAPNA-WLAL--DALGVSHKLAS-I 69 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~--~~~~~~~-------~~~~~-~~~~--~~~~~~~~~~~-~ 69 (184)
++||+|||||++|+++|++|+++ |.+|+|+|+...++ .++++.+ +.+.. ...+ +....+.++.+ .
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 81 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQH 81 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHHc
Confidence 48999999999999999999998 99999999986432 2222111 11111 1111 11222333321 1
Q ss_pred CCCcc--ceEEEecCCCc----------------eee-e-------ecCCC----CCCCCCCeeeeHHHHHHHHHhhCC-
Q 030042 70 YPPVN--RISVTNLGTGA----------------TQE-T-------SLTGK----FGDGSGPRFIHRKKLLQTLADELP- 118 (184)
Q Consensus 70 ~~~~~--~~~~~~~~~~~----------------~~~-~-------~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~- 118 (184)
...+. +..+......+ ... + .++.. ....+...++++..+.+.|.+.+.
T Consensus 82 ~~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~~~~~~ 161 (393)
T PRK11728 82 GIPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQA 161 (393)
T ss_pred CCCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHHHHHHh
Confidence 11111 11111111000 000 0 00000 011223457788899998887774
Q ss_pred -CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch-HHHhhhCCC
Q 030042 119 -NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS-TVAWWLGLS 174 (184)
Q Consensus 119 -~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s-~~~~~~~~~ 174 (184)
|++++++++|+++...+ .. +.|.+.++ ++.||.||+|+|.++ .+.+.++.+
T Consensus 162 ~Gv~i~~~~~V~~i~~~~---~~-~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~~ 214 (393)
T PRK11728 162 RGGEIRLGAEVTALDEHA---NG-VVVRTTQG-EYEARTLINCAGLMSDRLAKMAGLE 214 (393)
T ss_pred CCCEEEcCCEEEEEEecC---Ce-EEEEECCC-EEEeCEEEECCCcchHHHHHHhCCC
Confidence 88999999999998764 34 67788777 799999999999998 577777764
No 63
>PLN02697 lycopene epsilon cyclase
Probab=99.71 E-value=7.6e-16 Score=118.08 Aligned_cols=141 Identities=19% Similarity=0.191 Sum_probs=92.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT 83 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
..+||+||||||+|+++|..|++.|++|+++|+....... .+++. ..++.+++.+.+... +..........
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n---~GvW~---~~l~~lgl~~~i~~~---w~~~~v~~~~~ 177 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN---YGVWE---DEFKDLGLEDCIEHV---WRDTIVYLDDD 177 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCc---cccch---hHHHhcCcHHHHHhh---cCCcEEEecCC
Confidence 3589999999999999999999999999999985332211 22221 234555554433221 12222222111
Q ss_pred CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecC
Q 030042 84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCD 161 (184)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~ 161 (184)
... ..+..+..+++..+.+.|.+.+. ++++ ++++|+++...+ +....+.+.+|.++.|+.||+|+
T Consensus 178 -~~~--------~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~---~~~~vv~~~dG~~i~A~lVI~Ad 244 (529)
T PLN02697 178 -KPI--------MIGRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEAS---DGLRLVACEDGRVIPCRLATVAS 244 (529)
T ss_pred -cee--------eccCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcC---CcEEEEEEcCCcEEECCEEEECC
Confidence 110 01223346889999999988775 7777 678999988764 33133455677889999999999
Q ss_pred CcchH
Q 030042 162 GIHST 166 (184)
Q Consensus 162 G~~s~ 166 (184)
|.+|.
T Consensus 245 G~~S~ 249 (529)
T PLN02697 245 GAASG 249 (529)
T ss_pred CcChh
Confidence 99993
No 64
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.71 E-value=2.9e-17 Score=121.30 Aligned_cols=167 Identities=28% Similarity=0.307 Sum_probs=98.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC-ccc--eeeecc-------cHHHHH-HHcCChHHHHhcCC-Ccc
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG-TGA--AISFAP-------NAWLAL-DALGVSHKLASIYP-PVN 74 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~-~~~--~~~~~~-------~~~~~~-~~~~~~~~~~~~~~-~~~ 74 (184)
||+|||||++|+++|++|+++|.+|+|+|+.....+ ++. +..... ....+. +....+..+.+... +..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGIPVG 80 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTSSCE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeeccccccccccccccccccccccccccccchhhhhccchhhhhhhcCcccc
Confidence 899999999999999999999999999999843332 222 211111 001111 11222333322111 111
Q ss_pred ----ceEEEecCCCcee------------------------eeecCCCC------CCCCCCeeeeHHHHHHHHHhhCC--
Q 030042 75 ----RISVTNLGTGATQ------------------------ETSLTGKF------GDGSGPRFIHRKKLLQTLADELP-- 118 (184)
Q Consensus 75 ----~~~~~~~~~~~~~------------------------~~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~-- 118 (184)
............. ...++... ...+...++++..+.+.|.+.+.
T Consensus 81 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~~~~~ 160 (358)
T PF01266_consen 81 FRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAEAQRA 160 (358)
T ss_dssp EEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHHHHHT
T ss_pred cccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHHHHHh
Confidence 1111110000000 00010010 01124567889999999998874
Q ss_pred CCeeeeCceEEEEeccCCCCCcceE-EEEecCcEEEeeEEEecCCcchH-HHhhhCCCCCcc
Q 030042 119 NGTIHFSSKIAAIDSQTHDGSSPVF-IHLVDGTIVKTKFLIGCDGIHST-VAWWLGLSEPLN 178 (184)
Q Consensus 119 ~~~i~~~~~v~~~~~~~~~~~~~~~-v~~~~g~~~~a~~vI~a~G~~s~-~~~~~~~~~~~~ 178 (184)
|++++.+++|+++...+ .. +. |.+.+|+ +.||.||+|+|.++. +.+.++.+.|..
T Consensus 161 Gv~i~~~~~V~~i~~~~---~~-v~gv~~~~g~-i~ad~vV~a~G~~s~~l~~~~~~~~~~~ 217 (358)
T PF01266_consen 161 GVEIRTGTEVTSIDVDG---GR-VTGVRTSDGE-IRADRVVLAAGAWSPQLLPLLGLDLPLR 217 (358)
T ss_dssp T-EEEESEEEEEEEEET---TE-EEEEEETTEE-EEECEEEE--GGGHHHHHHTTTTSSTEE
T ss_pred hhhccccccccchhhcc---cc-cccccccccc-cccceeEecccccceeeeeccccccccc
Confidence 89999999999999886 44 66 9999997 999999999999885 566677655443
No 65
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.71 E-value=5.4e-16 Score=115.29 Aligned_cols=139 Identities=21% Similarity=0.285 Sum_probs=94.6
Q ss_pred cEEEECCCHHHHHHHHHH--HhCCCCeEEEeccCCCC-CccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042 7 DVVIIGAGIAGLATALAL--KRLGVEPLVLEKSDGLR-GTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT 83 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l--~~~g~~v~vie~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
||+|||||++|+++|+.| ++.|.+|+|||+.+... ...+.+.++...... .+.+. ...+....+.....
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~------~~~~v--~~~w~~~~v~~~~~ 72 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGP------LDSLV--SHRWSGWRVYFPDG 72 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccc------hHHHH--heecCceEEEeCCC
Confidence 899999999999999999 77899999999977652 111233332221111 11111 11122333333222
Q ss_pred CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC-CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCC
Q 030042 84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP-NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDG 162 (184)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G 162 (184)
... .....+..+++.++.+.+.+.+. +..++++++|++++..+ .. +.|.+.+|++++|++||+|+|
T Consensus 73 ~~~---------~~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~---~~-~~v~~~~g~~i~a~~VvDa~g 139 (374)
T PF05834_consen 73 SRI---------LIDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETG---DG-VLVVLADGRTIRARVVVDARG 139 (374)
T ss_pred ceE---------EcccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecC---ce-EEEEECCCCEEEeeEEEECCC
Confidence 110 01124568999999999999987 56788899999999886 44 788899999999999999999
Q ss_pred cchH
Q 030042 163 IHST 166 (184)
Q Consensus 163 ~~s~ 166 (184)
..+.
T Consensus 140 ~~~~ 143 (374)
T PF05834_consen 140 PSSP 143 (374)
T ss_pred cccc
Confidence 7654
No 66
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.70 E-value=7.2e-17 Score=129.35 Aligned_cols=140 Identities=24% Similarity=0.319 Sum_probs=101.9
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCCCccceeeecccHHHHHHHcC--ChHHHHhcCCCccceEEEecC
Q 030042 7 DVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALG--VSHKLASIYPPVNRISVTNLG 82 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 82 (184)
+|+||||||+|+++|+.|++. |++|+|+|+++.....|.+..+++.+.+.+...+ ....+......++.+.+..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHF-- 79 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEE--
Confidence 799999999999999999998 8999999999877777889999999888887765 2233333333333333332
Q ss_pred CCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEec
Q 030042 83 TGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGC 160 (184)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a 160 (184)
.+.. .. ..+..+..+.|.+|.+.|.+.+. +++++++++++++... ..++|+||+|
T Consensus 80 ~g~~--~~-----~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~~----------------~~~~D~VVgA 136 (765)
T PRK08255 80 KGRR--IR-----SGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQAL----------------AADADLVIAS 136 (765)
T ss_pred CCEE--EE-----ECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhhh----------------hcCCCEEEEc
Confidence 1111 10 12222345789999999998875 7899999988664321 1468999999
Q ss_pred CCcchHHHhhh
Q 030042 161 DGIHSTVAWWL 171 (184)
Q Consensus 161 ~G~~s~~~~~~ 171 (184)
||.+|.+|+.+
T Consensus 137 DG~~S~vR~~~ 147 (765)
T PRK08255 137 DGLNSRIRTRY 147 (765)
T ss_pred CCCCHHHHHHH
Confidence 99999998865
No 67
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.70 E-value=3.9e-16 Score=110.16 Aligned_cols=175 Identities=21% Similarity=0.236 Sum_probs=111.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHH----------HHcCChHHHH---hcC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLAL----------DALGVSHKLA---SIY 70 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~---~~~ 70 (184)
+..|++|||+|+.|+++|++|+++|.+++++|+.+.++..|.+++.+...+..+ +....|...+ ...
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~~ 85 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGVK 85 (399)
T ss_pred cceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhcee
Confidence 468999999999999999999999999999999998877776655433221111 1111222211 111
Q ss_pred CCccceEEEecCC-----------------------CceeeeecCCCC-----CCC---CCCeeeeHHHHHHHHHhhCC-
Q 030042 71 PPVNRISVTNLGT-----------------------GATQETSLTGKF-----GDG---SGPRFIHRKKLLQTLADELP- 118 (184)
Q Consensus 71 ~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~-----~~~---~~~~~~~~~~l~~~l~~~~~- 118 (184)
.......++.... .+...-+|+... ..| ....+++..+-++.+.+.+.
T Consensus 86 ~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~~ 165 (399)
T KOG2820|consen 86 LHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKARE 165 (399)
T ss_pred ecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHHHH
Confidence 1111111111111 000111222100 111 13457778888888888775
Q ss_pred -CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH--HHhhhCCCCCccc
Q 030042 119 -NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST--VAWWLGLSEPLNV 179 (184)
Q Consensus 119 -~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~--~~~~~~~~~~~~~ 179 (184)
|+.++.+.+|+.++..++++.. +.|+|.+|..+.||.+|+++|+|-. ++.-+++..|..+
T Consensus 166 ~G~i~~dg~~v~~~~~~~e~~~~-v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~~~~~~~Pv~~ 228 (399)
T KOG2820|consen 166 LGVIFRDGEKVKFIKFVDEEGNH-VSVQTTDGSIYHAKKIIFTVGAWINKLLPTSLAIGFPVAP 228 (399)
T ss_pred cCeEEecCcceeeEeeccCCCce-eEEEeccCCeeecceEEEEecHHHHhhcCcccccCCccce
Confidence 8899999999998876655666 9999999988999999999999853 3433566666654
No 68
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.70 E-value=1.6e-16 Score=123.22 Aligned_cols=174 Identities=15% Similarity=0.155 Sum_probs=98.2
Q ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC-CCccceeeecc--------c---HHHHHHHcCChHHHHhc
Q 030042 2 AMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL-RGTGAAISFAP--------N---AWLALDALGVSHKLASI 69 (184)
Q Consensus 2 ~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~-~~~~~~~~~~~--------~---~~~~~~~~~~~~~~~~~ 69 (184)
+..++||+|||||++|+++|+.|+++|.+|+|+|+.... +.++++..+-. . ....+++..++..+...
T Consensus 3 ~~~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~ 82 (546)
T PRK11101 3 DSQETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARH 82 (546)
T ss_pred CCccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchH
Confidence 334799999999999999999999999999999997543 23333222111 0 11111111111111110
Q ss_pred -CCCccceEEEecCCC---------------ceee-e-------ecCCC--C----CCCCCCeeeeHHHHHHHHHhhCC-
Q 030042 70 -YPPVNRISVTNLGTG---------------ATQE-T-------SLTGK--F----GDGSGPRFIHRKKLLQTLADELP- 118 (184)
Q Consensus 70 -~~~~~~~~~~~~~~~---------------~~~~-~-------~~~~~--~----~~~~~~~~~~~~~l~~~l~~~~~- 118 (184)
..+...+.+...... .... + .++.. . ...++ ..+++..+...+...+.
T Consensus 83 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~d-g~vdp~rl~~al~~~A~~ 161 (546)
T PRK11101 83 CVEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPD-GTVDPFRLTAANMLDAKE 161 (546)
T ss_pred hhcccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecC-cEECHHHHHHHHHHHHHh
Confidence 000111111110000 0000 0 00000 0 01122 46788888887766653
Q ss_pred -CCeeeeCceEEEEeccCCCCCcceEEEEe---cC--cEEEeeEEEecCCcch-HHHhhhCCCCCccc
Q 030042 119 -NGTIHFSSKIAAIDSQTHDGSSPVFIHLV---DG--TIVKTKFLIGCDGIHS-TVAWWLGLSEPLNV 179 (184)
Q Consensus 119 -~~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~g--~~~~a~~vI~a~G~~s-~~~~~~~~~~~~~~ 179 (184)
|++++++++|+++...+ +.. +.|.+. ++ .++.|+.||+|+|.|+ .+.++.+.+.|..+
T Consensus 162 ~Ga~i~~~t~V~~i~~~~--~~v-~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~~~~i~p 226 (546)
T PRK11101 162 HGAQILTYHEVTGLIREG--DTV-CGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADLRIRMFP 226 (546)
T ss_pred CCCEEEeccEEEEEEEcC--CeE-EEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCCCCceee
Confidence 89999999999998765 232 334432 23 3789999999999998 47777776666554
No 69
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.70 E-value=1.7e-17 Score=113.56 Aligned_cols=136 Identities=22% Similarity=0.240 Sum_probs=73.6
Q ss_pred EEECCCHHHHHHHHHHHhCCCC-eEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCcee
Q 030042 9 VIIGAGIAGLATALALKRLGVE-PLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGATQ 87 (184)
Q Consensus 9 ~IiGgG~~Gl~~A~~l~~~g~~-v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (184)
+||||||+|+++|..|.++|.+ ++|||+.+.+++.... .... ..+...........+.. . .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~----------~~~~---~~~~~~~~~~~~~~~~~---~--~ 62 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR----------YYSY---TRLHSPSFFSSDFGLPD---F--E 62 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC----------H-TT---TT-BSSSCCTGGSS--C---C--C
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE----------eCCC---CccccCccccccccCCc---c--c
Confidence 6999999999999999999998 9999999887665211 0000 00000000000000000 0 0
Q ss_pred eeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042 88 ETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS 165 (184)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s 165 (184)
.+.+.....+..........++.+++.+.++ +.+++++++|+++.+++ +. |.|.+++++++.|+.||+|+|..+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~---~~-w~v~~~~~~~~~a~~VVlAtG~~~ 138 (203)
T PF13738_consen 63 SFSFDDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDG---DG-WTVTTRDGRTIRADRVVLATGHYS 138 (203)
T ss_dssp HSCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEET---TT-EEEEETTS-EEEEEEEEE---SSC
T ss_pred ccccccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEec---cE-EEEEEEecceeeeeeEEEeeeccC
Confidence 0000000000001113556666666665553 67899999999999986 55 999999998899999999999755
Q ss_pred H
Q 030042 166 T 166 (184)
Q Consensus 166 ~ 166 (184)
.
T Consensus 139 ~ 139 (203)
T PF13738_consen 139 H 139 (203)
T ss_dssp S
T ss_pred C
Confidence 3
No 70
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.69 E-value=7.9e-16 Score=102.70 Aligned_cols=132 Identities=20% Similarity=0.298 Sum_probs=90.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccc--e-----eeecccHHHHHHHcCChHHHHhcCCCccceE
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGA--A-----ISFAPNAWLALDALGVSHKLASIYPPVNRIS 77 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (184)
+.||+|+|+||+||++||+|++.|.+|+|+||+..+++... + +.....+.+.|+++++.-+.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~----------- 98 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEE----------- 98 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCccee-----------
Confidence 46999999999999999999999999999999988865422 2 22344556666555332110
Q ss_pred EEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhC-C-CCeeeeCceEEEEeccCCC-CCcceEEE----Eec--
Q 030042 78 VTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADEL-P-NGTIHFSSKIAAIDSQTHD-GSSPVFIH----LVD-- 148 (184)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~-~~~i~~~~~v~~~~~~~~~-~~~~~~v~----~~~-- 148 (184)
.....+..+...+...|...+ . +.+|+..+.|.++...++. ..+ +.+. ...
T Consensus 99 -------------------~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaG-vVvNWt~V~~~~l 158 (262)
T COG1635 99 -------------------EEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAG-VVVNWTPVQMAGL 158 (262)
T ss_pred -------------------cCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEE-EEEecchhhhccc
Confidence 011244566677776666655 3 8999999999999877631 112 2221 111
Q ss_pred ---CcEEEeeEEEecCCcchHH
Q 030042 149 ---GTIVKTKFLIGCDGIHSTV 167 (184)
Q Consensus 149 ---g~~~~a~~vI~a~G~~s~~ 167 (184)
--+++|++||.|||+...+
T Consensus 159 hvDPl~i~a~~VvDaTGHda~v 180 (262)
T COG1635 159 HVDPLTIRAKAVVDATGHDAEV 180 (262)
T ss_pred ccCcceeeEEEEEeCCCCchHH
Confidence 2379999999999987654
No 71
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.69 E-value=1.9e-16 Score=120.05 Aligned_cols=160 Identities=24% Similarity=0.270 Sum_probs=102.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCC---CCeEEEeccCCCCCccceeeecccHHHHHHHcCChHH--HHhcC-CCccceEEEe
Q 030042 7 DVVIIGAGIAGLATALALKRLG---VEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHK--LASIY-PPVNRISVTN 80 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g---~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~ 80 (184)
||+|||||++|.++|..|++.+ ++|+|||+... ...+-|.+..|....+++.+|+.+. +.+.. ....+..+..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~-~~~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~ 79 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDI-PRIGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVN 79 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS----SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCC-CCCCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeee
Confidence 7999999999999999999988 89999998643 3456677788888889999998866 54443 3334555543
Q ss_pred cCCC-ceeeeecCC-------------------------------------------CCCC----CCCCeeeeHHHHHHH
Q 030042 81 LGTG-ATQETSLTG-------------------------------------------KFGD----GSGPRFIHRKKLLQT 112 (184)
Q Consensus 81 ~~~~-~~~~~~~~~-------------------------------------------~~~~----~~~~~~~~~~~l~~~ 112 (184)
+... .....+|.. .... ....++++|.++.+.
T Consensus 80 w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~~ 159 (454)
T PF04820_consen 80 WGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQF 159 (454)
T ss_dssp SSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHHH
T ss_pred cCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHHH
Confidence 3322 112222211 0001 114479999999999
Q ss_pred HHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchHHHhh
Q 030042 113 LADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWW 170 (184)
Q Consensus 113 l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~~~~~ 170 (184)
|.+.+. |++++.+ +|+++..+++ +.. ..|.+.+|++++||+||+|+|..+.+.+.
T Consensus 160 L~~~A~~~Gv~~~~g-~V~~v~~~~~-g~i-~~v~~~~g~~i~ad~~IDASG~~s~L~~~ 216 (454)
T PF04820_consen 160 LRRHAEERGVEVIEG-TVVDVELDED-GRI-TAVRLDDGRTIEADFFIDASGRRSLLARK 216 (454)
T ss_dssp HHHHHHHTT-EEEET--EEEEEE-TT-SEE-EEEEETTSEEEEESEEEE-SGGG-CCCCC
T ss_pred HHHHHhcCCCEEEeC-EEEEEEEcCC-CCE-EEEEECCCCEEEEeEEEECCCccchhhHh
Confidence 999885 8998877 5778877652 333 67888899999999999999998876543
No 72
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.69 E-value=4.7e-16 Score=118.59 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=54.2
Q ss_pred eeeeHHHHHHHHHhhCC------C--CeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch-HHHhhhC
Q 030042 102 RFIHRKKLLQTLADELP------N--GTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS-TVAWWLG 172 (184)
Q Consensus 102 ~~~~~~~l~~~l~~~~~------~--~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s-~~~~~~~ 172 (184)
..+++..+.+.|.+.+. | ++++++++|++++..+ +.. +.|.+.+| ++.|++||+|+|+|+ .+.+.+|
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~--~~~-~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~G 281 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN--DSL-YKIHTNRG-EIRARFVVVSACGYSLLFAQKMG 281 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC--CCe-EEEEECCC-EEEeCEEEECcChhHHHHHHHhC
Confidence 46788888877766542 3 6789999999999874 244 88888887 699999999999999 5788887
Q ss_pred C
Q 030042 173 L 173 (184)
Q Consensus 173 ~ 173 (184)
+
T Consensus 282 i 282 (497)
T PTZ00383 282 Y 282 (497)
T ss_pred C
Confidence 6
No 73
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.68 E-value=2.1e-15 Score=112.89 Aligned_cols=142 Identities=19% Similarity=0.251 Sum_probs=90.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCce
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGAT 86 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (184)
||+|||||++|+++|+.|++.|.+|+|+|+.+..+.. ..+.++... ++++++.+.+. ..+...........
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~-- 71 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN-HTYGVWDDD---LSDLGLADCVE---HVWPDVYEYRFPKQ-- 71 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC-ccccccHhh---hhhhchhhHHh---hcCCCceEEecCCc--
Confidence 8999999999999999999999999999998654321 222222221 22232211111 01111111110000
Q ss_pred eeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcc
Q 030042 87 QETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIH 164 (184)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~ 164 (184)
..........+++..+.+.+.+.+. +++++ +.+|+++...+ ++. +.|.+.+|++++|++||+|+|.+
T Consensus 72 -------~~~~~~~~~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~--~~~-~~v~~~~g~~~~a~~VI~A~G~~ 140 (388)
T TIGR01790 72 -------PRKLGTAYGSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADG--VAL-STVYCAGGQRIQARLVIDARGFG 140 (388)
T ss_pred -------chhcCCceeEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecC--Cce-eEEEeCCCCEEEeCEEEECCCCc
Confidence 0011123446889999999988775 66664 66888887763 244 77888888889999999999999
Q ss_pred hHHH
Q 030042 165 STVA 168 (184)
Q Consensus 165 s~~~ 168 (184)
|.++
T Consensus 141 s~~~ 144 (388)
T TIGR01790 141 PLVQ 144 (388)
T ss_pred hhcc
Confidence 8553
No 74
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.68 E-value=2.1e-15 Score=115.27 Aligned_cols=72 Identities=15% Similarity=0.150 Sum_probs=54.8
Q ss_pred CCeeeeHHHHHHHHHhhCC--C-CeeeeCceEEEEeccCCCCCcceEEEEe---cCc--EEEeeEEEecCCcch-HHHhh
Q 030042 100 GPRFIHRKKLLQTLADELP--N-GTIHFSSKIAAIDSQTHDGSSPVFIHLV---DGT--IVKTKFLIGCDGIHS-TVAWW 170 (184)
Q Consensus 100 ~~~~~~~~~l~~~l~~~~~--~-~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~g~--~~~a~~vI~a~G~~s-~~~~~ 170 (184)
....++...+.+.|.+.+. + ++++++++|++++..++ .. |.+.+. +|+ ++.|++||+|+|+++ .+++.
T Consensus 176 ~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~d--g~-~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~ 252 (494)
T PRK05257 176 IGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDD--GS-WTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQK 252 (494)
T ss_pred CceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCC--CC-EEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHH
Confidence 3457788888888887764 4 79999999999987652 22 555543 353 689999999999988 57888
Q ss_pred hCCC
Q 030042 171 LGLS 174 (184)
Q Consensus 171 ~~~~ 174 (184)
+|++
T Consensus 253 ~Gi~ 256 (494)
T PRK05257 253 SGIP 256 (494)
T ss_pred cCCC
Confidence 8776
No 75
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.68 E-value=8.4e-16 Score=102.90 Aligned_cols=132 Identities=26% Similarity=0.340 Sum_probs=82.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccc-------eeeecccHHHHHHHcCChHHHHhcCCCccce
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGA-------AISFAPNAWLALDALGVSHKLASIYPPVNRI 76 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (184)
.++||+|||+||+||++|+.|++.|++|+|||++..+++.-. .+........+|+++++.-+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~----------- 84 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYE----------- 84 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---E-----------
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeE-----------
Confidence 368999999999999999999999999999999988765321 23344556666666633111
Q ss_pred EEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhC--CCCeeeeCceEEEEeccCCCCCc-ceEEEE----ecC
Q 030042 77 SVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADEL--PNGTIHFSSKIAAIDSQTHDGSS-PVFIHL----VDG 149 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~i~~~~~v~~~~~~~~~~~~-~~~v~~----~~g 149 (184)
. .+...+..+..++...|..++ .|++++..+.|+++...++ .+. .+++.- ..|
T Consensus 85 ---~----------------~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~-~rV~GvViNWt~V~~~g 144 (230)
T PF01946_consen 85 ---E----------------YGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVRED-DRVAGVVINWTPVEMAG 144 (230)
T ss_dssp ---E-----------------SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECS-CEEEEEEEEEHHHHTT-
T ss_pred ---E----------------eCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcC-CeEEEEEEEehHHhHhh
Confidence 0 001234556677777666655 3899999999999887762 122 022221 112
Q ss_pred -----cEEEeeEEEecCCcchH
Q 030042 150 -----TIVKTKFLIGCDGIHST 166 (184)
Q Consensus 150 -----~~~~a~~vI~a~G~~s~ 166 (184)
-+++|++||.|||+.+.
T Consensus 145 lHvDPl~i~ak~ViDaTGHda~ 166 (230)
T PF01946_consen 145 LHVDPLTIRAKVVIDATGHDAE 166 (230)
T ss_dssp -T-B-EEEEESEEEE---SSSS
T ss_pred cCCCcceEEEeEEEeCCCCchH
Confidence 38999999999998763
No 76
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.67 E-value=1.2e-15 Score=117.41 Aligned_cols=169 Identities=18% Similarity=0.209 Sum_probs=92.2
Q ss_pred CCCc-cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC-CccceeeecccHHHHHHHcC-------------ChHH
Q 030042 1 MAMV-EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR-GTGAAISFAPNAWLALDALG-------------VSHK 65 (184)
Q Consensus 1 m~~~-~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~-~~~~~~~~~~~~~~~~~~~~-------------~~~~ 65 (184)
|+|. ++||+|||||++|+++|+.|+++|.+|+|+|+.+... .++++..+-.....+++... ++..
T Consensus 1 ~~~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~~ss~lihgG~ryl~~~~~~l~~e~l~er~~l~~~ 80 (508)
T PRK12266 1 MTMMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSSASTKLIHGGLRYLEHYEFRLVREALAEREVLLRM 80 (508)
T ss_pred CCCCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccccccchHHHhhhccHHHHHHHHHHHHHHHHh
Confidence 6664 6999999999999999999999999999999975433 23333333222222221110 0000
Q ss_pred HHhcCCCccc-----------------eEEEe---cCCC-ce-eeeec------CCC--CCCC---CCCeeeeHHHHHHH
Q 030042 66 LASIYPPVNR-----------------ISVTN---LGTG-AT-QETSL------TGK--FGDG---SGPRFIHRKKLLQT 112 (184)
Q Consensus 66 ~~~~~~~~~~-----------------~~~~~---~~~~-~~-~~~~~------~~~--~~~~---~~~~~~~~~~l~~~ 112 (184)
......+... +.+.+ .... .. ....+ ... ...+ +...++++..+...
T Consensus 81 ~p~~~~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~~~~l~~~~~~~~~~~~~~~~L~~~l~g~~~~~dg~vd~~rl~~~ 160 (508)
T PRK12266 81 APHIIWPMRFVLPHRPHLRPAWMIRAGLFLYDHLGKRKSLPGSRGLDLGRDPAGSPLKPEITRGFEYSDCWVDDARLVVL 160 (508)
T ss_pred CCCcccccceEEEecccccchHHHHHHHHHHHhhcCCCCCChhhhhchhhcccCCCcchhhcEEEEEcCcccCHHHHHHH
Confidence 0000000000 00000 0000 00 00000 000 0000 11124566777666
Q ss_pred HHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEec---C--cEEEeeEEEecCCcchH-HHh-hhCC
Q 030042 113 LADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVD---G--TIVKTKFLIGCDGIHST-VAW-WLGL 173 (184)
Q Consensus 113 l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~---g--~~~~a~~vI~a~G~~s~-~~~-~~~~ 173 (184)
+...+. |++++.+++|+++...+ .. +.+.+.+ | .++.|+.||+|+|.|+. +.+ .++.
T Consensus 161 l~~~A~~~Ga~i~~~~~V~~i~~~~---~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~ 226 (508)
T PRK12266 161 NARDAAERGAEILTRTRVVSARREN---GL-WHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDDGLGL 226 (508)
T ss_pred HHHHHHHcCCEEEcCcEEEEEEEeC---CE-EEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhhccCC
Confidence 655543 89999999999998764 33 6666553 4 37899999999999983 544 3354
No 77
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.66 E-value=1.6e-15 Score=114.16 Aligned_cols=75 Identities=15% Similarity=0.092 Sum_probs=54.3
Q ss_pred eeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch-HHHhhhCCCCCcc
Q 030042 102 RFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS-TVAWWLGLSEPLN 178 (184)
Q Consensus 102 ~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s-~~~~~~~~~~~~~ 178 (184)
..+++..+...|.+.+. |++++.+++|++++..++ +.. +.|.+.+| ++.++.||+|+|+++ .+++.+++..|.+
T Consensus 178 g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~-~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~~~~~ 254 (407)
T TIGR01373 178 GTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDG-GRV-IGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFRLPIE 254 (407)
T ss_pred CcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-CcE-EEEEeCCc-eEECCEEEECCChhhHHHHHHcCCCCCcC
Confidence 35566777776666653 899999999999976431 232 56788777 689999988888876 5777777766654
Q ss_pred c
Q 030042 179 V 179 (184)
Q Consensus 179 ~ 179 (184)
+
T Consensus 255 ~ 255 (407)
T TIGR01373 255 S 255 (407)
T ss_pred c
Confidence 3
No 78
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.64 E-value=2.2e-15 Score=114.36 Aligned_cols=152 Identities=17% Similarity=0.262 Sum_probs=86.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHh-cCCCccceEEEecCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLAS-IYPPVNRISVTNLGT 83 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 83 (184)
..+|+|||||++||++|.+|.++|++|+|+|+.+..++.. .+.+.... ...++.+.... ....+..+....+..
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W---~~~~~~~~--d~~~~~~~~~~~~s~~Y~~L~tn~p~~ 84 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLW---VYTPKSES--DPLSLDPTRSIVHSSVYESLRTNLPRE 84 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCccee---ecCCCcCC--CccccCCCCcccchhhhhhhhccCCHh
Confidence 5799999999999999999999999999999998876543 22211100 00000000000 000000000000000
Q ss_pred Cc-eeeeecCCCC--CCCCCCeeeeHHHHHHHHHhhCC--CCe--eeeCceEEEEeccCCCCCcceEEEEecC--c--EE
Q 030042 84 GA-TQETSLTGKF--GDGSGPRFIHRKKLLQTLADELP--NGT--IHFSSKIAAIDSQTHDGSSPVFIHLVDG--T--IV 152 (184)
Q Consensus 84 ~~-~~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~--~~~--i~~~~~v~~~~~~~~~~~~~~~v~~~~g--~--~~ 152 (184)
.. ...+++.... .......+....++.++|.+.+. ++. |+++++|+++.+.+ .. |.|.+.++ . +.
T Consensus 85 ~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~---~~-w~V~~~~~~~~~~~~ 160 (461)
T PLN02172 85 CMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD---GK-WRVQSKNSGGFSKDE 160 (461)
T ss_pred hccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC---Ce-EEEEEEcCCCceEEE
Confidence 00 0111111100 00001123456778888888774 554 89999999998865 44 88887643 2 45
Q ss_pred EeeEEEecCCcch
Q 030042 153 KTKFLIGCDGIHS 165 (184)
Q Consensus 153 ~a~~vI~a~G~~s 165 (184)
.+|.||+|+|..+
T Consensus 161 ~~d~VIvAtG~~~ 173 (461)
T PLN02172 161 IFDAVVVCNGHYT 173 (461)
T ss_pred EcCEEEEeccCCC
Confidence 7999999999764
No 79
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.64 E-value=7.4e-15 Score=110.71 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=50.9
Q ss_pred eeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecC-----cEEEeeEEEecCCcch-HHHhhhCCC
Q 030042 103 FIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG-----TIVKTKFLIGCDGIHS-TVAWWLGLS 174 (184)
Q Consensus 103 ~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g-----~~~~a~~vI~a~G~~s-~~~~~~~~~ 174 (184)
.++...+...|.+.+. |++++.+++|+++...+ .. +.+.+.++ .+++|+.||+|+|.++ .+.+.++..
T Consensus 193 ~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~---~~-~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~~~ 268 (410)
T PRK12409 193 TGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDG---GG-VVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLGDR 268 (410)
T ss_pred ccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC---CE-EEEEEEcCCCCccceEecCEEEECCCcChHHHHHHhCCC
Confidence 4566677777777664 89999999999998754 33 55554332 3789999999999997 466666654
Q ss_pred CCc
Q 030042 175 EPL 177 (184)
Q Consensus 175 ~~~ 177 (184)
.|.
T Consensus 269 ~~i 271 (410)
T PRK12409 269 VNV 271 (410)
T ss_pred Ccc
Confidence 443
No 80
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.64 E-value=8.5e-15 Score=110.73 Aligned_cols=136 Identities=23% Similarity=0.233 Sum_probs=85.7
Q ss_pred CccccEEEECCCHHHHHHHHHHHhCCCC-eEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEec
Q 030042 3 MVEKDVVIIGAGIAGLATALALKRLGVE-PLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNL 81 (184)
Q Consensus 3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~-v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
+.++||+|||||++|+++|+.|.++|.+ ++|+||+...++..+-. ....+.+..+
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~------------------------ry~~l~~~~p 61 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYN------------------------RYPGLRLDSP 61 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhc------------------------cCCceEECCc
Confidence 4578999999999999999999999998 99999998877663210 0111111100
Q ss_pred CCCceeeeecCCCC-CCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcE--EEeeEEE
Q 030042 82 GTGATQETSLTGKF-GDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTI--VKTKFLI 158 (184)
Q Consensus 82 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~--~~a~~vI 158 (184)
.. ...+++.... ...+......+..+..++.+.....++.+++.|..+..+++ ... |.|.++++.+ ++||+||
T Consensus 62 ~~--~~~~~~~p~~~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~-~~~-w~V~~~~~~~~~~~a~~vV 137 (443)
T COG2072 62 KW--LLGFPFLPFRWDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDED-TKR-WTVTTSDGGTGELTADFVV 137 (443)
T ss_pred hh--eeccCCCccCCcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCC-CCe-EEEEEcCCCeeeEecCEEE
Confidence 00 0111111110 00011111124455555555544567888888888877764 234 9999988865 5599999
Q ss_pred ecCCcchH
Q 030042 159 GCDGIHST 166 (184)
Q Consensus 159 ~a~G~~s~ 166 (184)
+|||..+.
T Consensus 138 ~ATG~~~~ 145 (443)
T COG2072 138 VATGHLSE 145 (443)
T ss_pred EeecCCCC
Confidence 99998663
No 81
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.63 E-value=4.5e-15 Score=117.80 Aligned_cols=157 Identities=20% Similarity=0.187 Sum_probs=94.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC--CCccceeee-----cc--c-HHHHH-----HHcCChHHHHhcC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL--RGTGAAISF-----AP--N-AWLAL-----DALGVSHKLASIY 70 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~--~~~~~~~~~-----~~--~-~~~~~-----~~~~~~~~~~~~~ 70 (184)
+||+|||||++|+++|++|+++|.+|+|+|++..+ +.++++.++ .. . ..++. ....++..+.+..
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~~gaSg~~~G~l~~~~~~~~~~~~~l~~~a~~~a~~~~~~l~~~~ 340 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFYDALPAAG 340 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCccccCCcCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 69999999999999999999999999999997533 333332211 00 0 01110 1122233332111
Q ss_pred C----CccceEEEecCCCce-------------------------eeeecCCC--CCCCCCCeeeeHHHHHHHHHhhCC-
Q 030042 71 P----PVNRISVTNLGTGAT-------------------------QETSLTGK--FGDGSGPRFIHRKKLLQTLADELP- 118 (184)
Q Consensus 71 ~----~~~~~~~~~~~~~~~-------------------------~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~- 118 (184)
. ...+........... ........ ....+...++++..+...|.+.+.
T Consensus 341 ~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~g~~~p~~G~v~p~~l~~aL~~~a~~ 420 (662)
T PRK01747 341 VAFDHDWCGVLQLAWDEKSAEKIAKMLALGLPAELARALDAEEAEELAGLPVPCGGIFYPQGGWLCPAELCRALLALAGQ 420 (662)
T ss_pred CCCCCCCCceEEeecCchHHHHHHHHHhccCchHhhhhCCHHHHHHHhCCCCCCCcEEeCCCCeeCHHHHHHHHHHhccc
Confidence 1 111111111111000 00000000 011123356788899999998876
Q ss_pred CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH
Q 030042 119 NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST 166 (184)
Q Consensus 119 ~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~ 166 (184)
+++++++++|+++...+ +. +.|.+.+|..+.|+.||+|+|.++.
T Consensus 421 Gv~i~~~~~V~~i~~~~---~~-~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 421 QLTIHFGHEVARLERED---DG-WQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred CcEEEeCCEeeEEEEeC---CE-EEEEECCCcEEECCEEEECCCCCcc
Confidence 68999999999998765 44 7788888877889999999999874
No 82
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.63 E-value=5.1e-15 Score=114.09 Aligned_cols=147 Identities=22% Similarity=0.258 Sum_probs=86.7
Q ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC-CCCCccceeeecc----cHHHHHHHcC-ChHHHHhcCCCccce
Q 030042 3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD-GLRGTGAAISFAP----NAWLALDALG-VSHKLASIYPPVNRI 76 (184)
Q Consensus 3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~-~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~ 76 (184)
+.+|||+|||||++|+.+|+.+++.|.+|+++|+.. ..+..++.-.+.- ...+.+..+| +.....+... . ..
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~g-i-q~ 79 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTG-I-QF 79 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhcc-C-ce
Confidence 457999999999999999999999999999999874 3332222111110 1111122222 1111111110 0 01
Q ss_pred EEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEE
Q 030042 77 SVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVK 153 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~ 153 (184)
....... +...+++ ...+++..+.+.+.+.+. ++++ ++++|+++...+ +.. ..|.+.+|..+.
T Consensus 80 r~ln~sk---------GpAV~s~-RaQiDr~ly~kaL~e~L~~~~nV~I-~q~~V~~Li~e~--grV-~GV~t~dG~~I~ 145 (618)
T PRK05192 80 RMLNTSK---------GPAVRAL-RAQADRKLYRAAMREILENQPNLDL-FQGEVEDLIVEN--GRV-VGVVTQDGLEFR 145 (618)
T ss_pred eecccCC---------CCceeCc-HHhcCHHHHHHHHHHHHHcCCCcEE-EEeEEEEEEecC--CEE-EEEEECCCCEEE
Confidence 1111100 0011111 125677777777766553 6776 467888887654 233 668888899999
Q ss_pred eeEEEecCCcch
Q 030042 154 TKFLIGCDGIHS 165 (184)
Q Consensus 154 a~~vI~a~G~~s 165 (184)
|+.||+|||.++
T Consensus 146 Ak~VIlATGTFL 157 (618)
T PRK05192 146 AKAVVLTTGTFL 157 (618)
T ss_pred CCEEEEeeCcch
Confidence 999999999765
No 83
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.63 E-value=9.4e-15 Score=112.56 Aligned_cols=167 Identities=16% Similarity=0.114 Sum_probs=93.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC-CccceeeecccHHHHHHHcCC--h-------HHHHhcC---
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR-GTGAAISFAPNAWLALDALGV--S-------HKLASIY--- 70 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~--- 70 (184)
.++||+|||||++|+++|+.|+++|.+|+|+|+.+... .++++..+-.....+++.... . ..+....
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~ap~l 84 (502)
T PRK13369 5 ETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAAAPHI 84 (502)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHhCCcc
Confidence 46999999999999999999999999999999986433 233333322222222221110 0 0000000
Q ss_pred CCccceEEEecC---------------------CCc-e-eeeecC------CC--CCCC---CCCeeeeHHHHHHHHHhh
Q 030042 71 PPVNRISVTNLG---------------------TGA-T-QETSLT------GK--FGDG---SGPRFIHRKKLLQTLADE 116 (184)
Q Consensus 71 ~~~~~~~~~~~~---------------------~~~-~-~~~~~~------~~--~~~~---~~~~~~~~~~l~~~l~~~ 116 (184)
.....+.+.... ... . ..+... .. ...+ +...++++..+...+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl~~~l~~~ 164 (502)
T PRK13369 85 IWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLVVLNALD 164 (502)
T ss_pred ccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEEEEcCeeecHHHHHHHHHHH
Confidence 000000000000 000 0 000000 00 0000 112356777787777666
Q ss_pred CC--CCeeeeCceEEEEeccCCCCCcceEEEEecC----cEEEeeEEEecCCcchH-HHh-hhCCC
Q 030042 117 LP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG----TIVKTKFLIGCDGIHST-VAW-WLGLS 174 (184)
Q Consensus 117 ~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g----~~~~a~~vI~a~G~~s~-~~~-~~~~~ 174 (184)
+. |++++.+++|+++...+ .. +.|.+.++ .++.|+.||+|+|.|+. +.+ ..+.+
T Consensus 165 a~~~Ga~i~~~~~V~~i~~~~---~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~ 226 (502)
T PRK13369 165 AAERGATILTRTRCVSARREG---GL-WRVETRDADGETRTVRARALVNAAGPWVTDVIHRVAGSN 226 (502)
T ss_pred HHHCCCEEecCcEEEEEEEcC---CE-EEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhccCCC
Confidence 53 89999999999998764 44 66666554 36899999999999984 655 44543
No 84
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.62 E-value=7.2e-15 Score=111.90 Aligned_cols=72 Identities=11% Similarity=0.144 Sum_probs=55.1
Q ss_pred CCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEE---EecCc--EEEeeEEEecCCcch-HHHhh
Q 030042 100 GPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIH---LVDGT--IVKTKFLIGCDGIHS-TVAWW 170 (184)
Q Consensus 100 ~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~---~~~g~--~~~a~~vI~a~G~~s-~~~~~ 170 (184)
....++...+.+.|.+.+. +++++++++|+++...++ .. |++. +.+++ +++||+||+|+|+++ .+.+.
T Consensus 177 ~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d--~~-w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~ 253 (497)
T PRK13339 177 EGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSD--GG-WEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQK 253 (497)
T ss_pred CceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCC--CC-EEEEEEecCCCceEEEEcCEEEECCCcchHHHHHH
Confidence 4457788888888877662 799999999999987631 33 6665 34452 689999999999998 58888
Q ss_pred hCCC
Q 030042 171 LGLS 174 (184)
Q Consensus 171 ~~~~ 174 (184)
+|++
T Consensus 254 ~Gi~ 257 (497)
T PRK13339 254 SGIP 257 (497)
T ss_pred cCCC
Confidence 8875
No 85
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.62 E-value=1.1e-14 Score=111.18 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=56.4
Q ss_pred CCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEE---ecC--cEEEeeEEEecCCcch-HHHhhh
Q 030042 100 GPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHL---VDG--TIVKTKFLIGCDGIHS-TVAWWL 171 (184)
Q Consensus 100 ~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~---~~g--~~~~a~~vI~a~G~~s-~~~~~~ 171 (184)
....+++..+.+.|.+.+. |++++++++|++++..++ .. |.+.+ .+| .+++|++||+|+|+++ .+++.+
T Consensus 171 ~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~--~~-v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~ 247 (483)
T TIGR01320 171 EGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSD--GS-WTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKS 247 (483)
T ss_pred CCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC--Ce-EEEEEeeccCCceEEEECCEEEECCCcchHHHHHHc
Confidence 4567899999999988875 899999999999987641 23 55543 334 3689999999999988 588888
Q ss_pred CCC
Q 030042 172 GLS 174 (184)
Q Consensus 172 ~~~ 174 (184)
|++
T Consensus 248 Gi~ 250 (483)
T TIGR01320 248 GIP 250 (483)
T ss_pred CCC
Confidence 876
No 86
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.62 E-value=4.4e-14 Score=102.35 Aligned_cols=172 Identities=24% Similarity=0.248 Sum_probs=120.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhC----CCCeEEEeccCCC--C-------CccceeeecccHHHHHHHcCChHHHHh-c
Q 030042 4 VEKDVVIIGAGIAGLATALALKRL----GVEPLVLEKSDGL--R-------GTGAAISFAPNAWLALDALGVSHKLAS-I 69 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~----g~~v~vie~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 69 (184)
+.|||+|+||||.|+++|..|... -++|+++|-...+ + -..+-..+++.+...++..+.|+.+.. +
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~R 114 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHDR 114 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhhc
Confidence 479999999999999999999753 4589999987432 1 122456678899999999999988764 5
Q ss_pred CCCccceEEEecCCCceeeeecCCCCCCC-CCCeeeeHHHHHHHHH-----hhCCCCeeeeCceEEEEecc-----CCCC
Q 030042 70 YPPVNRISVTNLGTGATQETSLTGKFGDG-SGPRFIHRKKLLQTLA-----DELPNGTIHFSSKIAAIDSQ-----THDG 138 (184)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~-----~~~~~~~i~~~~~v~~~~~~-----~~~~ 138 (184)
+.+.+++..++.-.. ..+.|.... .+ .-.+.+....+...|. ...+++++...+++.++... ++.+
T Consensus 115 ~~~~~~~~v~Ds~s~--a~I~~~~d~-~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~ 191 (481)
T KOG3855|consen 115 YQKFSRMLVWDSCSA--ALILFDHDN-VGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNG 191 (481)
T ss_pred cccccceeeecccch--hhhhhcccc-ccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCc
Confidence 666777777664332 233333221 11 1122333333333333 33348999999999888763 2224
Q ss_pred CcceEEEEecCcEEEeeEEEecCCcchHHHhhhCCCCCccc
Q 030042 139 SSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLGLSEPLNV 179 (184)
Q Consensus 139 ~~~~~v~~~~g~~~~a~~vI~a~G~~s~~~~~~~~~~~~~~ 179 (184)
.+ ..+.+.+|..+..|++|+|+|.+|.+|+..+++.+.+.
T Consensus 192 ~~-~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~n 231 (481)
T KOG3855|consen 192 MW-FHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWN 231 (481)
T ss_pred ce-EEEEeccCceeeeceeeccccccchhhhhcCCCccccc
Confidence 55 78888999999999999999999999999999887654
No 87
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.61 E-value=7e-15 Score=110.23 Aligned_cols=136 Identities=24% Similarity=0.306 Sum_probs=88.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHH----HHHHHcCChHHHHhcCCCccceEEE
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAW----LALDALGVSHKLASIYPPVNRISVT 79 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (184)
...+++|||+|++||++|..|.++|.+++++||.+..++... +.+... .+++++ ...
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~---y~~~~~~~~ss~Y~~l----------------~tn 65 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWK---YTENVEVVHSSVYKSL----------------RTN 65 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEe---ecCcccccccchhhhh----------------hcc
Confidence 357999999999999999999999999999999998876532 211111 111111 111
Q ss_pred ecCCC-ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC----CCeeeeCceEEEEeccCCCCCcceEEEEecC----c
Q 030042 80 NLGTG-ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP----NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG----T 150 (184)
Q Consensus 80 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g----~ 150 (184)
.+..- ....++|... ....+.+..++.++|.+.++ ..+|.++++|..+....+ .. |.|.+.+. +
T Consensus 66 ~pKe~~~~~dfpf~~~----~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~--gk-W~V~~~~~~~~~~ 138 (448)
T KOG1399|consen 66 LPKEMMGYSDFPFPER----DPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK--GK-WRVTTKDNGTQIE 138 (448)
T ss_pred CChhhhcCCCCCCccc----CcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC--Cc-eeEEEecCCccee
Confidence 10000 0022222222 12234556688888887775 357999999999988752 13 88887654 3
Q ss_pred EEEeeEEEecCCcch
Q 030042 151 IVKTKFLIGCDGIHS 165 (184)
Q Consensus 151 ~~~a~~vI~a~G~~s 165 (184)
...+|+|++|+|.+.
T Consensus 139 ~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 139 EEIFDAVVVCTGHYV 153 (448)
T ss_pred EEEeeEEEEcccCcC
Confidence 677999999999883
No 88
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.61 E-value=8.8e-15 Score=111.70 Aligned_cols=67 Identities=10% Similarity=0.038 Sum_probs=52.1
Q ss_pred CCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH-HHhhhC
Q 030042 100 GPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST-VAWWLG 172 (184)
Q Consensus 100 ~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~-~~~~~~ 172 (184)
....+++.++...|.+.+. |++|+.+++|++++.. +. +.|.+.+| ++.|+.||+|+|+++. +...++
T Consensus 176 ~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~----~~-~~v~t~~g-~v~A~~VV~Atga~s~~l~~~~~ 245 (460)
T TIGR03329 176 VAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEEG----QP-AVVRTPDG-QVTADKVVLALNAWMASHFPQFE 245 (460)
T ss_pred CCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEeeC----Cc-eEEEeCCc-EEECCEEEEcccccccccChhhc
Confidence 3357788999998887764 8999999999999753 33 67888777 6899999999999863 433344
No 89
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.59 E-value=6.9e-15 Score=113.16 Aligned_cols=142 Identities=20% Similarity=0.240 Sum_probs=83.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+|+|||||++||++|..|.+.|++++++|+.+..|+..+-..-... +. ...+..+....+
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~--------g~-------~~~y~sl~~n~s---- 62 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPED--------GR-------SSVYDSLHTNTS---- 62 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCC--------SE-------GGGSTT-B-SS-----
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCC--------Cc-------cccccceEEeeC----
Confidence 47999999999999999999999999999999998877321000000 00 000001110000
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--C--CeeeeCceEEEEeccCCCC-CcceEEEEec-C--cEEEeeEE
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--N--GTIHFSSKIAAIDSQTHDG-SSPVFIHLVD-G--TIVKTKFL 157 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~--~~i~~~~~v~~~~~~~~~~-~~~~~v~~~~-g--~~~~a~~v 157 (184)
.....|.+.........+.+..++.++|.+.++ + -.|+|||+|+++.+.++.. .+.|.|.+++ | ++-.+|.|
T Consensus 63 k~~~~fsdfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~V 142 (531)
T PF00743_consen 63 KEMMAFSDFPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAV 142 (531)
T ss_dssp GGGSCCTTS-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEE
T ss_pred chHhcCCCcCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeE
Confidence 011112221111112235678888888888775 3 4789999999999865311 1238888754 3 24568999
Q ss_pred EecCCcchH
Q 030042 158 IGCDGIHST 166 (184)
Q Consensus 158 I~a~G~~s~ 166 (184)
|+|+|.++.
T Consensus 143 vvatG~~~~ 151 (531)
T PF00743_consen 143 VVATGHFSK 151 (531)
T ss_dssp EEEE-SSSC
T ss_pred EEcCCCcCC
Confidence 999999874
No 90
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.58 E-value=5.6e-16 Score=117.02 Aligned_cols=150 Identities=19% Similarity=0.238 Sum_probs=38.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceee---ecc-cHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAIS---FAP-NAWLALDALGVSHKLASIYPPVNRISVTNLG 82 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
||+|||||++|+++|+.+++.|.+|+|+|+...+++...+.. +.. .... ...-++..++............
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~-~~~~gi~~e~~~~~~~~~~~~~---- 75 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDED-QVIGGIFREFLNRLRARGGYPQ---- 75 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHH-HHHHHHHHHHHHST------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhh-ccCCCHHHHHHHHHhhhccccc----
Confidence 899999999999999999999999999999998876543221 111 1111 1112234444333222111100
Q ss_pred CCceeeeecCCCCCCCC-CCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecC-cEEEeeEEE
Q 030042 83 TGATQETSLTGKFGDGS-GPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG-TIVKTKFLI 158 (184)
Q Consensus 83 ~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g-~~~~a~~vI 158 (184)
. .. .++ ....+++..+...|.+.+. |+++++++.|+++..+++...+ +.+.+.+| .++.||.+|
T Consensus 76 ~---~~--------~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~-V~~~~~~g~~~i~A~~~I 143 (428)
T PF12831_consen 76 E---DR--------YGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITG-VIVETKSGRKEIRAKVFI 143 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c---cc--------ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccc
Confidence 0 00 000 0012333344333333332 8999999999999987632222 44444444 589999999
Q ss_pred ecCCcchHHHhhhCCC
Q 030042 159 GCDGIHSTVAWWLGLS 174 (184)
Q Consensus 159 ~a~G~~s~~~~~~~~~ 174 (184)
+|||- ..+....|.+
T Consensus 144 DaTG~-g~l~~~aG~~ 158 (428)
T PF12831_consen 144 DATGD-GDLAALAGAP 158 (428)
T ss_dssp ----------------
T ss_pred ccccc-cccccccccc
Confidence 99994 4555555544
No 91
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.57 E-value=7e-14 Score=105.96 Aligned_cols=169 Identities=17% Similarity=0.196 Sum_probs=100.6
Q ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC-CCccceeeecccHHHHHHHcCCh------------HHHHh
Q 030042 2 AMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL-RGTGAAISFAPNAWLALDALGVS------------HKLAS 68 (184)
Q Consensus 2 ~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 68 (184)
.+.++|++|||||++|+-+|..++.+|++|+++|+++.- +.++++..+-.....+++...+. .....
T Consensus 9 ~~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~AP 88 (532)
T COG0578 9 RMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAP 88 (532)
T ss_pred cccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCc
Confidence 346899999999999999999999999999999998764 45566666555555554443211 11111
Q ss_pred cCCCccceEEEecC----------------------------------CCceeeeecCCCCCC-C--CCCeeeeHHHHHH
Q 030042 69 IYPPVNRISVTNLG----------------------------------TGATQETSLTGKFGD-G--SGPRFIHRKKLLQ 111 (184)
Q Consensus 69 ~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~-~--~~~~~~~~~~l~~ 111 (184)
.......+.+.... ........+...... + +.-.+++...|..
T Consensus 89 H~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~ 168 (532)
T COG0578 89 HLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVA 168 (532)
T ss_pred cccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHH
Confidence 11100000000000 000000000000001 1 1223555555554
Q ss_pred HHHhhC-C-CCeeeeCceEEEEeccCCCCCcceEEEEec---Cc--EEEeeEEEecCCcch-HHHhhhCCC
Q 030042 112 TLADEL-P-NGTIHFSSKIAAIDSQTHDGSSPVFIHLVD---GT--IVKTKFLIGCDGIHS-TVAWWLGLS 174 (184)
Q Consensus 112 ~l~~~~-~-~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~---g~--~~~a~~vI~a~G~~s-~~~~~~~~~ 174 (184)
.+...+ . |.+++..++|+++...+ .. +.|...| |+ .++|+.||+|+|.|+ .+++..+..
T Consensus 169 ~~a~~A~~~Ga~il~~~~v~~~~re~---~v-~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~ 235 (532)
T COG0578 169 ANARDAAEHGAEILTYTRVESLRREG---GV-WGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLE 235 (532)
T ss_pred HHHHHHHhcccchhhcceeeeeeecC---CE-EEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhccc
Confidence 444433 2 88999999999999887 33 6676654 32 688999999999999 577777544
No 92
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.57 E-value=9.9e-14 Score=102.98 Aligned_cols=135 Identities=21% Similarity=0.293 Sum_probs=83.5
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHh-cCCCccceEEEecCC
Q 030042 7 DVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLAS-IYPPVNRISVTNLGT 83 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 83 (184)
||+|||||++|+++|+.|++. |++|+|+|+.+..++. +.+.++.....- . ....+.. ....+....+....
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~-~tw~~~~~~~~~---~-~~~~~~~~v~~~W~~~~v~~~~- 74 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN-HTWSFFDSDLSD---A-QHAWLADLVQTDWPGYEVRFPK- 74 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc-ccceecccccch---h-hhhhhhhhheEeCCCCEEECcc-
Confidence 899999999999999999987 9999999997654322 122221111000 0 0000000 11112222222110
Q ss_pred CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCc
Q 030042 84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGI 163 (184)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~ 163 (184)
.....+..+..+++.++.+.+.+.+.. .++++++|+++.. ++ +.+ .+|+++.|++||+|+|.
T Consensus 75 ---------~~~~l~~~Y~~I~r~~f~~~l~~~l~~-~i~~~~~V~~v~~-----~~-v~l--~dg~~~~A~~VI~A~G~ 136 (370)
T TIGR01789 75 ---------YRRKLKTAYRSMTSTRFHEGLLQAFPE-GVILGRKAVGLDA-----DG-VDL--APGTRINARSVIDCRGF 136 (370)
T ss_pred ---------hhhhcCCCceEEEHHHHHHHHHHhhcc-cEEecCEEEEEeC-----CE-EEE--CCCCEEEeeEEEECCCC
Confidence 011122355689999999999887752 3777999998832 22 444 67889999999999998
Q ss_pred ch
Q 030042 164 HS 165 (184)
Q Consensus 164 ~s 165 (184)
+|
T Consensus 137 ~s 138 (370)
T TIGR01789 137 KP 138 (370)
T ss_pred CC
Confidence 76
No 93
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.55 E-value=4.9e-14 Score=106.46 Aligned_cols=73 Identities=15% Similarity=0.102 Sum_probs=53.4
Q ss_pred eeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH-HHhhhCCCCCccc
Q 030042 103 FIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST-VAWWLGLSEPLNV 179 (184)
Q Consensus 103 ~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~-~~~~~~~~~~~~~ 179 (184)
.+++..+...|.+.+. |++++.+++|++++..+ +..+.|.+.++ ++.||.||+|+|.++. +.+.++.+.|.++
T Consensus 197 ~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~---~~~~~v~t~~~-~~~a~~VV~a~G~~~~~l~~~~g~~~pi~p 272 (416)
T PRK00711 197 TGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG---GRITGVQTGGG-VITADAYVVALGSYSTALLKPLGVDIPVYP 272 (416)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC---CEEEEEEeCCc-EEeCCEEEECCCcchHHHHHHhCCCcccCC
Confidence 5567788888877664 89999999999998765 32145666655 7899999999999884 5555665555443
No 94
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.6e-13 Score=98.68 Aligned_cols=113 Identities=24% Similarity=0.328 Sum_probs=76.3
Q ss_pred CccccEEEECCCHHHHHHHHHHHhCCCC-eEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEec
Q 030042 3 MVEKDVVIIGAGIAGLATALALKRLGVE-PLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNL 81 (184)
Q Consensus 3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~-v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
|+.+||+||||||+||++|.++++.+++ ++|+|+. .+++.. ....
T Consensus 1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~-~~gg~~-----------------------------~~~~---- 46 (305)
T COG0492 1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGG-EPGGQL-----------------------------TKTT---- 46 (305)
T ss_pred CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecC-CcCCcc-----------------------------ccce----
Confidence 3579999999999999999999999998 6666654 322110 0000
Q ss_pred CCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEe
Q 030042 82 GTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIG 159 (184)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~ 159 (184)
..-.++ |. .......+|.+.+.+++. ++++.. ..|.+++..+ +. +.|.+.++. ++||.||+
T Consensus 47 -----~venyp-----g~-~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~---~~-F~v~t~~~~-~~ak~vIi 109 (305)
T COG0492 47 -----DVENYP-----GF-PGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEG---GP-FKVKTDKGT-YEAKAVII 109 (305)
T ss_pred -----eecCCC-----CC-ccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecC---ce-EEEEECCCe-EEEeEEEE
Confidence 000011 11 112344677777777774 666666 6777777664 33 999999997 99999999
Q ss_pred cCCcchH
Q 030042 160 CDGIHST 166 (184)
Q Consensus 160 a~G~~s~ 166 (184)
|+|....
T Consensus 110 AtG~~~~ 116 (305)
T COG0492 110 ATGAGAR 116 (305)
T ss_pred CcCCccc
Confidence 9998754
No 95
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.54 E-value=1.2e-13 Score=108.65 Aligned_cols=70 Identities=14% Similarity=0.144 Sum_probs=51.3
Q ss_pred eeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEE---ecCc--EEEeeEEEecCCcch-HHHhhhC
Q 030042 102 RFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHL---VDGT--IVKTKFLIGCDGIHS-TVAWWLG 172 (184)
Q Consensus 102 ~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~---~~g~--~~~a~~vI~a~G~~s-~~~~~~~ 172 (184)
.++++..+...|.+.+. |++++.+++|+++..+++++.. +.|.. .+++ ++.+|.||+|+|+|+ .++++++
T Consensus 227 g~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v-~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g 304 (627)
T PLN02464 227 GQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRI-VGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMAD 304 (627)
T ss_pred cEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcE-EEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhcc
Confidence 45688889888888775 8999999999999875310232 44443 2333 689999999999998 4777775
No 96
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.54 E-value=8e-14 Score=103.60 Aligned_cols=152 Identities=19% Similarity=0.208 Sum_probs=85.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC-CCccceeee--c-----ccHHHH-HHHcCChHHHHhcC-CCcc-
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL-RGTGAAISF--A-----PNAWLA-LDALGVSHKLASIY-PPVN- 74 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~-~~~~~~~~~--~-----~~~~~~-~~~~~~~~~~~~~~-~~~~- 74 (184)
+||+|||||++|+++|++|+++|.+|+|+|+.... +.++++.++ . .....+ .+....+.++.+.. ..+.
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~~gaS~~~~G~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 80 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQGASVRNFGQVWPTGQAPGPAWDRARRSREIWLELAAKAGIWVRE 80 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccCceEEecCCCCccHHHHHHHHHHHHHHHHHHcCCCEEe
Confidence 59999999999999999999999999999997642 222222111 0 101111 11112233322111 1110
Q ss_pred -ceEEEecCC----------------C-ceeee-------ecCCC---C----CCCCCCeeeeHHHHHHHHHhhC--C-C
Q 030042 75 -RISVTNLGT----------------G-ATQET-------SLTGK---F----GDGSGPRFIHRKKLLQTLADEL--P-N 119 (184)
Q Consensus 75 -~~~~~~~~~----------------~-~~~~~-------~~~~~---~----~~~~~~~~~~~~~l~~~l~~~~--~-~ 119 (184)
+........ . ....+ .++.. . ...+...++++..+...|.+.+ . |
T Consensus 81 ~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~g~v~p~~~~~~l~~~~~~~~G 160 (365)
T TIGR03364 81 NGSLHLARTEEELAVLEEFAATREPAEYRVELLTPAEVAAKFPALRLDGLRGGLHSPDELRVEPREAIPALAAYLAEQHG 160 (365)
T ss_pred CCEEEEeCCHHHHHHHHHHHHhhhhcCCCeEEECHHHHHHhCCCCCccCceEEEEcCCCeeECHHHHHHHHHHHHHhcCC
Confidence 010110000 0 00000 00100 0 0112335678888888887764 2 8
Q ss_pred CeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH
Q 030042 120 GTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST 166 (184)
Q Consensus 120 ~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~ 166 (184)
++++.+++|++++.. .|.+.+| .+.|+.||+|+|+++.
T Consensus 161 v~i~~~t~V~~i~~~--------~v~t~~g-~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 161 VEFHWNTAVTSVETG--------TVRTSRG-DVHADQVFVCPGADFE 198 (365)
T ss_pred CEEEeCCeEEEEecC--------eEEeCCC-cEEeCEEEECCCCChh
Confidence 999999999998632 3666776 4789999999999874
No 97
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.54 E-value=2.2e-13 Score=98.58 Aligned_cols=110 Identities=23% Similarity=0.352 Sum_probs=74.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
|||+|||||++|+++|..|++.|.+|+|||+.+ +++. +... ..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~---~~~~-------------~~-------------------- 43 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQ---LTTT-------------TE-------------------- 43 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcc---eeec-------------cc--------------------
Confidence 699999999999999999999999999999875 2211 0000 00
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCc
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGI 163 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~ 163 (184)
...++.. . ..+...++...+.+.+. ++++++ ++|+++...+ .. +.+.+.+++++.+|.||+|+|.
T Consensus 44 --~~~~~~~-----~-~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~---~~-~~v~~~~~~~~~~d~liiAtG~ 110 (300)
T TIGR01292 44 --VENYPGF-----P-EGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSD---RP-FKVKTGDGKEYTAKAVIIATGA 110 (300)
T ss_pred --ccccCCC-----C-CCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecC---Ce-eEEEeCCCCEEEeCEEEECCCC
Confidence 0000000 0 01122345555554442 788888 8999998765 44 7788888889999999999998
Q ss_pred ch
Q 030042 164 HS 165 (184)
Q Consensus 164 ~s 165 (184)
..
T Consensus 111 ~~ 112 (300)
T TIGR01292 111 SA 112 (300)
T ss_pred Cc
Confidence 64
No 98
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.53 E-value=3.4e-13 Score=104.03 Aligned_cols=39 Identities=41% Similarity=0.652 Sum_probs=35.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~ 42 (184)
.++||+|||+|.+|+++|+.+++.|.+|+||||.+..++
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG 98 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGG 98 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence 368999999999999999999999999999999887654
No 99
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.52 E-value=1.2e-13 Score=103.33 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=51.9
Q ss_pred CCeeeeHHHHHHHHHhhCC--C-CeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH-HHhhhC
Q 030042 100 GPRFIHRKKLLQTLADELP--N-GTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST-VAWWLG 172 (184)
Q Consensus 100 ~~~~~~~~~l~~~l~~~~~--~-~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~-~~~~~~ 172 (184)
....+++..+.+.+.+.+. | ..+..++.+..+.... .. +.|.+.+|. +.|+.||+|+|+++. +....+
T Consensus 149 ~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~---~~-~~v~t~~g~-i~a~~vv~a~G~~~~~l~~~~~ 220 (387)
T COG0665 149 TGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDG---RV-VGVETDGGT-IEADKVVLAAGAWAGELAATLG 220 (387)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecC---cE-EEEEeCCcc-EEeCEEEEcCchHHHHHHHhcC
Confidence 4457778888888888775 5 4566688888888751 23 889999986 999999999999975 555555
No 100
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.50 E-value=1e-13 Score=101.84 Aligned_cols=140 Identities=24% Similarity=0.311 Sum_probs=82.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEE-eccCCCCCccceeeecccHHHH----HHHcC-ChHHHHhcCCCccceEEEe
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVL-EKSDGLRGTGAAISFAPNAWLA----LDALG-VSHKLASIYPPVNRISVTN 80 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vi-e~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~ 80 (184)
||+|||||.+|+.+|+.+++.|.+|+++ ++.+..+..++.-++.....-. ++.+| ..-...+ ...+.+..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD----~~~i~~~~ 76 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAAD----ETGIHFRM 76 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHH----HHEEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHh----Hhhhhhhc
Confidence 8999999999999999999999999999 4444444444444433322211 22222 1111111 11121111
Q ss_pred cCCCceeeeecCCCCCCCC-CCeeeeHHHHHHHHHhhC---CCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeE
Q 030042 81 LGTGATQETSLTGKFGDGS-GPRFIHRKKLLQTLADEL---PNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKF 156 (184)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~ 156 (184)
.+.. ..+.+. ....+++..+.+++.+.+ ++++++ +.+|+++...+ +.. +.|.+.+|+.+.+|.
T Consensus 77 lN~s---------kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~--~~v-~GV~~~~g~~~~a~~ 143 (392)
T PF01134_consen 77 LNRS---------KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVEN--GKV-KGVVTKDGEEIEADA 143 (392)
T ss_dssp ESTT---------S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECT--TEE-EEEEETTSEEEEECE
T ss_pred cccc---------CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecC--CeE-EEEEeCCCCEEecCE
Confidence 1110 000111 223788888887776665 367775 67999998876 344 889999999999999
Q ss_pred EEecCCc
Q 030042 157 LIGCDGI 163 (184)
Q Consensus 157 vI~a~G~ 163 (184)
||+|||.
T Consensus 144 vVlaTGt 150 (392)
T PF01134_consen 144 VVLATGT 150 (392)
T ss_dssp EEE-TTT
T ss_pred EEEeccc
Confidence 9999998
No 101
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=99.50 E-value=4.5e-13 Score=99.14 Aligned_cols=70 Identities=19% Similarity=0.238 Sum_probs=52.5
Q ss_pred eeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEec---C--cEEEeeEEEecCCcch-HHHhhhCC
Q 030042 103 FIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLVD---G--TIVKTKFLIGCDGIHS-TVAWWLGL 173 (184)
Q Consensus 103 ~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~---g--~~~~a~~vI~a~G~~s-~~~~~~~~ 173 (184)
-++-..|.+.|.+.+. +++++++++|+++++.+ ++.|.|.+.| | .++.|++|+++.|+.+ .+.+.+|+
T Consensus 177 DVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~---dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi 253 (488)
T PF06039_consen 177 DVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNG---DGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGI 253 (488)
T ss_pred cccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECC---CCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCC
Confidence 3445566666666553 78999999999999987 3338777643 2 5899999999999988 57788887
Q ss_pred CC
Q 030042 174 SE 175 (184)
Q Consensus 174 ~~ 175 (184)
++
T Consensus 254 ~e 255 (488)
T PF06039_consen 254 PE 255 (488)
T ss_pred hh
Confidence 53
No 102
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.49 E-value=4.1e-13 Score=102.82 Aligned_cols=36 Identities=39% Similarity=0.540 Sum_probs=33.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
.++||+|||+|++|+++|+.+++.|.+|+|+||.+.
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~ 38 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR 38 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 478999999999999999999999999999999864
No 103
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.48 E-value=8.3e-13 Score=102.21 Aligned_cols=110 Identities=20% Similarity=0.298 Sum_probs=77.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG 84 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
.+|++||||||+|+++|.+|++.|.+|+|+++. .++... . . . .+.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~----~------------------~-~---~~~------- 255 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVL----D------------------T-M---GIE------- 255 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeee----c------------------c-C---ccc-------
Confidence 589999999999999999999999999999763 322200 0 0 0 000
Q ss_pred ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCC
Q 030042 85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDG 162 (184)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G 162 (184)
.+. + .......++.+.+.+.+. +++++++++|+++...+ +. +.+.+.+|..+.++.||+|+|
T Consensus 256 -----~~~-----~--~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~---~~-~~V~~~~g~~i~a~~vViAtG 319 (517)
T PRK15317 256 -----NFI-----S--VPETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAA---GL-IEVELANGAVLKAKTVILATG 319 (517)
T ss_pred -----ccC-----C--CCCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC---Ce-EEEEECCCCEEEcCEEEECCC
Confidence 000 0 001223456666665553 78999999999998864 33 788888888899999999999
Q ss_pred cch
Q 030042 163 IHS 165 (184)
Q Consensus 163 ~~s 165 (184)
...
T Consensus 320 ~~~ 322 (517)
T PRK15317 320 ARW 322 (517)
T ss_pred CCc
Confidence 864
No 104
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.48 E-value=1.8e-13 Score=102.69 Aligned_cols=156 Identities=22% Similarity=0.190 Sum_probs=84.9
Q ss_pred EEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc----c--ceeeeccc-HHHHHHHcCC-hHHHHh---cCCCccceE
Q 030042 9 VIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT----G--AAISFAPN-AWLALDALGV-SHKLAS---IYPPVNRIS 77 (184)
Q Consensus 9 ~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~----~--~~~~~~~~-~~~~~~~~~~-~~~~~~---~~~~~~~~~ 77 (184)
+|||||++|+++|+.|+++|.+|+|+||.+..+.. + +....... ...+...... ...+.. .....+.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 59999999999999999999999999998876532 1 11111110 1111111110 000100 000000000
Q ss_pred EEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEee
Q 030042 78 VTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTK 155 (184)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~ 155 (184)
+............ .+. . .........+.+.+.+.+. +++++.+++|+++...+ .. +.+.+ +++++.+|
T Consensus 81 ~~~~~Gv~~~~~~-~g~--~--~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~---~~-~~v~~-~~~~i~ad 150 (400)
T TIGR00275 81 FFESLGLELKVEE-DGR--V--FPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD---NG-FGVET-SGGEYEAD 150 (400)
T ss_pred HHHHcCCeeEEec-CCE--e--ECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC---Ce-EEEEE-CCcEEEcC
Confidence 0000000000000 000 0 0001123566666666553 89999999999997654 34 66766 45679999
Q ss_pred EEEecCCcch-----------HHHhhhCCC
Q 030042 156 FLIGCDGIHS-----------TVAWWLGLS 174 (184)
Q Consensus 156 ~vI~a~G~~s-----------~~~~~~~~~ 174 (184)
.||+|+|.+| .+.+.+|..
T Consensus 151 ~VIlAtG~~s~p~~gs~G~g~~la~~lG~~ 180 (400)
T TIGR00275 151 KVILATGGLSYPQLGSTGDGYEIAESLGHT 180 (400)
T ss_pred EEEECCCCcccCCCCCCcHHHHHHHHCCCC
Confidence 9999999865 466777765
No 105
>PLN02661 Putative thiazole synthesis
Probab=99.48 E-value=7.4e-13 Score=96.07 Aligned_cols=129 Identities=25% Similarity=0.314 Sum_probs=77.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCCeEEEeccCCCCCccc--eeeec-----ccHHHHHHHcCChHHHHhcCCCccc
Q 030042 4 VEKDVVIIGAGIAGLATALALKRL-GVEPLVLEKSDGLRGTGA--AISFA-----PNAWLALDALGVSHKLASIYPPVNR 75 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~-g~~v~vie~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (184)
.++||+|||||++|+++|+.|++. |.+|+|+|+...+++... +..+. ....++++++|+ +++.
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV---------~fd~ 161 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGV---------PYDE 161 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCC---------Cccc
Confidence 468999999999999999999976 899999999877654211 11111 112222333322 1100
Q ss_pred eEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhC---CCCeeeeCceEEEEeccCCCCCcceEEEE------
Q 030042 76 ISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADEL---PNGTIHFSSKIAAIDSQTHDGSSPVFIHL------ 146 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v~~~~~~~~~~~~~~~v~~------ 146 (184)
. + + .....+...+.+.|.+++ .+++++.++.++++..++ +.. ..+.+
T Consensus 162 ~------d--------------g-y~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~--grV-aGVVvnw~~v~ 217 (357)
T PLN02661 162 Q------E--------------N-YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--DRV-GGVVTNWALVA 217 (357)
T ss_pred C------C--------------C-eeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecC--CEE-EEEEeecchhh
Confidence 0 0 0 000112234444444433 279999999999998765 232 23321
Q ss_pred ec--C------cEEEeeEEEecCCcch
Q 030042 147 VD--G------TIVKTKFLIGCDGIHS 165 (184)
Q Consensus 147 ~~--g------~~~~a~~vI~a~G~~s 165 (184)
.+ + ..+.||.||+|||+..
T Consensus 218 ~~~~~~s~~dp~~I~AkaVVlATGh~g 244 (357)
T PLN02661 218 QNHDTQSCMDPNVMEAKVVVSSCGHDG 244 (357)
T ss_pred hccCCCCccceeEEECCEEEEcCCCCC
Confidence 11 1 2689999999999765
No 106
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.48 E-value=1.5e-12 Score=94.89 Aligned_cols=167 Identities=23% Similarity=0.231 Sum_probs=105.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhC------CCCeEEEeccCCCCCcc-ceeeecccHHHHHHHcCChHHHHhcCCCc---
Q 030042 4 VEKDVVIIGAGIAGLATALALKRL------GVEPLVLEKSDGLRGTG-AAISFAPNAWLALDALGVSHKLASIYPPV--- 73 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~------g~~v~vie~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 73 (184)
+.+||+||||||+||++|+.|.|. .++|.|+|+....++.. .+..+.|.++..| .+.+++...+.
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL-----~P~wke~~apl~t~ 149 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDEL-----LPDWKEDGAPLNTP 149 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhh-----CcchhhcCCccccc
Confidence 468999999999999999988763 46899999999887654 3444555555443 33333333322
Q ss_pred ---cceEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEec
Q 030042 74 ---NRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVD 148 (184)
Q Consensus 74 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~ 148 (184)
+.+.+......-.... +...... ..+.++-..+.+||-++++ |++|+-+..+..+..+++ +.. ..|-|+|
T Consensus 150 vT~d~~~fLt~~~~i~vPv-~~pm~Nh--GNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~ed-gsV-kGiaT~D 224 (621)
T KOG2415|consen 150 VTSDKFKFLTGKGRISVPV-PSPMDNH--GNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDED-GSV-KGIATND 224 (621)
T ss_pred ccccceeeeccCceeecCC-CcccccC--CcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCC-CcE-eeEeecc
Confidence 2333332222111110 1111112 3568889999999999987 899998888888877764 233 4455533
Q ss_pred ---------------CcEEEeeEEEecCCcchHHHh----hhCCCCCcccc
Q 030042 149 ---------------GTIVKTKFLIGCDGIHSTVAW----WLGLSEPLNVN 180 (184)
Q Consensus 149 ---------------g~~~~a~~vI~a~G~~s~~~~----~~~~~~~~~~~ 180 (184)
|-.++|+.-|.|.|.+..+.+ .++++....++
T Consensus 225 ~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~q 275 (621)
T KOG2415|consen 225 VGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQ 275 (621)
T ss_pred ccccCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcc
Confidence 336899999999998765433 33555434333
No 107
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=99.47 E-value=1.7e-12 Score=92.45 Aligned_cols=168 Identities=20% Similarity=0.247 Sum_probs=95.2
Q ss_pred cccEEEECCCHHHHHHHHHHHh----CCCCeEEEeccCCCCCccceee---------ecc------cHHHHHHH----cC
Q 030042 5 EKDVVIIGAGIAGLATALALKR----LGVEPLVLEKSDGLRGTGAAIS---------FAP------NAWLALDA----LG 61 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~----~g~~v~vie~~~~~~~~~~~~~---------~~~------~~~~~~~~----~~ 61 (184)
++||+|||||..|+++|++|.+ .|++|+|+|++......+.... +.. -+.++++. ++
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlpEnIqmSLF~a~Flr~a~ehl~ 165 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLPENIQMSLFTAEFLRNAREHLG 165 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccchhhhhhhHHHHHHHHHHHhhc
Confidence 5799999999999999999975 3799999999886543332211 111 11222211 22
Q ss_pred ChH--HHHhcCCCccceEEEecCCCc-----------------------e-eeeecCC-----CCCCCC-CCeeeeHHHH
Q 030042 62 VSH--KLASIYPPVNRISVTNLGTGA-----------------------T-QETSLTG-----KFGDGS-GPRFIHRKKL 109 (184)
Q Consensus 62 ~~~--~~~~~~~~~~~~~~~~~~~~~-----------------------~-~~~~~~~-----~~~~~~-~~~~~~~~~l 109 (184)
+.+ ++.-.+.+...+.+......+ . ..+++.. ....|. ...++++..|
T Consensus 166 ~~d~~~vdl~f~P~GyL~LA~ee~ae~m~s~~kvQ~e~GAk~eLls~d~Lt~rfPwlntegVaLa~lG~e~EGwfdpw~L 245 (509)
T KOG2853|consen 166 ILDSEQVDLNFFPTGYLRLASEEEAEMMRSNSKVQNELGAKVELLSPDELTKRFPWLNTEGVALASLGVEKEGWFDPWAL 245 (509)
T ss_pred cccCCCCCcccCCCceEEEcchhhHHHHHHhHHHHHhhcchhcccCHHHHhhhCCcccccceeeeecccccccccCHHHH
Confidence 211 111112222211111100000 0 1122211 113333 4458889999
Q ss_pred HHHHHhhCC--CCeeeeCceEEEEeccCC-----------------CCCcceEEEEecC--cEEEeeEEEecCCcch-HH
Q 030042 110 LQTLADELP--NGTIHFSSKIAAIDSQTH-----------------DGSSPVFIHLVDG--TIVKTKFLIGCDGIHS-TV 167 (184)
Q Consensus 110 ~~~l~~~~~--~~~i~~~~~v~~~~~~~~-----------------~~~~~~~v~~~~g--~~~~a~~vI~a~G~~s-~~ 167 (184)
+..+++++. |+.+.. -+|++++.... ...+ +.|+..++ +++++..+|+|.|+|| .+
T Consensus 246 Ls~~rrk~~~lGv~f~~-GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~-vvV~m~d~~~r~vk~al~V~aAGa~s~Qv 323 (509)
T KOG2853|consen 246 LSGIRRKAITLGVQFVK-GEVVGFEFESQRAVHAFTDDGTAKLRAQRISG-VVVRMNDALARPVKFALCVNAAGAWSGQV 323 (509)
T ss_pred HHHHHHHhhhhcceEec-ceEEEEEEecccceeeecccchhhhhhcccce-eEEecCchhcCceeEEEEEeccCccHHHH
Confidence 999999876 554443 36666665421 0122 55555554 6899999999999999 68
Q ss_pred HhhhCCC
Q 030042 168 AWWLGLS 174 (184)
Q Consensus 168 ~~~~~~~ 174 (184)
+++.++.
T Consensus 324 ArlAgIG 330 (509)
T KOG2853|consen 324 ARLAGIG 330 (509)
T ss_pred HHHhccC
Confidence 8888765
No 108
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.47 E-value=1.9e-12 Score=101.06 Aligned_cols=41 Identities=37% Similarity=0.532 Sum_probs=36.8
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR 41 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~ 41 (184)
|.+.++||+|||+|.+|+++|+.+++.|.+|+|+||.+..+
T Consensus 1 ~~~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~ 41 (566)
T PRK06452 1 MEKIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTR 41 (566)
T ss_pred CCcccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence 66678999999999999999999999999999999986543
No 109
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.47 E-value=1.5e-12 Score=101.43 Aligned_cols=113 Identities=21% Similarity=0.296 Sum_probs=74.1
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEe
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTN 80 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
|+ ..|||+||||||+|+++|..|++.|++|+|||+.. .++.- ...
T Consensus 1 m~-~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~---~~~------------------------------ 45 (555)
T TIGR03143 1 ME-EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQI---TIT------------------------------ 45 (555)
T ss_pred CC-CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceE---Eec------------------------------
Confidence 55 35999999999999999999999999999999853 32210 000
Q ss_pred cCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEE
Q 030042 81 LGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLI 158 (184)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI 158 (184)
. ....++. ........+.+.+.+.+. +++++ +++|+++...+ +. +.+.+.++ .+.++.||
T Consensus 46 --~---~i~~~pg-------~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~---~~-~~V~~~~g-~~~a~~lV 107 (555)
T TIGR03143 46 --S---EVVNYPG-------ILNTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFDG---DI-KTIKTARG-DYKTLAVL 107 (555)
T ss_pred --c---ccccCCC-------CcCCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEecC---CE-EEEEecCC-EEEEeEEE
Confidence 0 0000000 001223455565555443 67764 77888888654 33 66777666 58899999
Q ss_pred ecCCcchH
Q 030042 159 GCDGIHST 166 (184)
Q Consensus 159 ~a~G~~s~ 166 (184)
+|||++..
T Consensus 108 lATGa~p~ 115 (555)
T TIGR03143 108 IATGASPR 115 (555)
T ss_pred ECCCCccC
Confidence 99998653
No 110
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.47 E-value=1.6e-12 Score=101.88 Aligned_cols=42 Identities=36% Similarity=0.599 Sum_probs=37.2
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCC---CCeEEEeccCCCCC
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLG---VEPLVLEKSDGLRG 42 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g---~~v~vie~~~~~~~ 42 (184)
|...++||+|||||++|+++|+.+++.| .+|+|+||....++
T Consensus 1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred CCceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 6667899999999999999999999998 89999999876543
No 111
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.46 E-value=1.1e-12 Score=102.64 Aligned_cols=39 Identities=46% Similarity=0.787 Sum_probs=34.0
Q ss_pred CccccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCC
Q 030042 3 MVEKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLR 41 (184)
Q Consensus 3 ~~~~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~ 41 (184)
|.++||+|||||++|+++|+.+++. |.+|+|+||....+
T Consensus 1 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~g 41 (575)
T PRK05945 1 MLEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIR 41 (575)
T ss_pred CCcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCc
Confidence 3579999999999999999999987 47999999986544
No 112
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.46 E-value=1.9e-12 Score=98.11 Aligned_cols=40 Identities=35% Similarity=0.528 Sum_probs=34.6
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~ 42 (184)
|. .++||+|||+|.+|+++|+.++ .|.+|+|+||.+..++
T Consensus 1 m~-~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg 40 (433)
T PRK06175 1 MN-LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC 40 (433)
T ss_pred CC-ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC
Confidence 54 5799999999999999999985 7999999999876544
No 113
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.46 E-value=1.5e-12 Score=99.63 Aligned_cols=44 Identities=34% Similarity=0.536 Sum_probs=40.0
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG 44 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~ 44 (184)
|.|.+|||+||||||+|+.+|+.|++.|.+|+|+|+.+..++..
T Consensus 1 ~~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~ 44 (461)
T PRK05249 1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGC 44 (461)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccc
Confidence 78889999999999999999999999999999999977666553
No 114
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.46 E-value=2e-12 Score=102.08 Aligned_cols=37 Identities=32% Similarity=0.490 Sum_probs=33.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL 40 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~ 40 (184)
.++||+|||+|.+|+++|+.+++.|.+|+|+||...+
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~ 70 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP 70 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 3689999999999999999999999999999986554
No 115
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.46 E-value=1e-12 Score=99.93 Aligned_cols=36 Identities=44% Similarity=0.758 Sum_probs=33.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CCeEEEeccCCCCC
Q 030042 7 DVVIIGAGIAGLATALALKRLG-VEPLVLEKSDGLRG 42 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g-~~v~vie~~~~~~~ 42 (184)
||+|||+|++|+++|+.++++| .+|+|+||.+..++
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg 37 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGG 37 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCC
Confidence 8999999999999999999999 99999999877554
No 116
>PRK07121 hypothetical protein; Validated
Probab=99.45 E-value=4.7e-12 Score=97.61 Aligned_cols=40 Identities=40% Similarity=0.619 Sum_probs=35.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~ 43 (184)
.++||+|||+|.+|+++|+.++++|.+|+|+||....++.
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~ 58 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGA 58 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCc
Confidence 4689999999999999999999999999999998765543
No 117
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.45 E-value=2.2e-12 Score=99.77 Aligned_cols=111 Identities=20% Similarity=0.314 Sum_probs=75.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT 83 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
..+||+||||||+|+++|..|++.|.+|+|+|+. .++... . .. .+.
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~GG~~~----~-------------------~~---~~~------ 256 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVK----D-------------------TV---GIE------ 256 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCccc----c-------------------Cc---Ccc------
Confidence 3589999999999999999999999999999752 222200 0 00 000
Q ss_pred CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecC
Q 030042 84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCD 161 (184)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~ 161 (184)
.+... . .....++.+.+.+... +++++.+++|+++...+ .. +.+.+.+|+.+.+|.+|+|+
T Consensus 257 ------~~~~~-----~--~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~---~~-~~v~~~~g~~i~~d~lIlAt 319 (515)
T TIGR03140 257 ------NLISV-----P--YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETED---GL-IVVTLESGEVLKAKSVIVAT 319 (515)
T ss_pred ------ccccc-----C--CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecC---Ce-EEEEECCCCEEEeCEEEECC
Confidence 00000 0 0123445555544442 78999999999998654 33 77888888889999999999
Q ss_pred Ccch
Q 030042 162 GIHS 165 (184)
Q Consensus 162 G~~s 165 (184)
|+..
T Consensus 320 Ga~~ 323 (515)
T TIGR03140 320 GARW 323 (515)
T ss_pred CCCc
Confidence 9863
No 118
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.43 E-value=5.2e-12 Score=98.18 Aligned_cols=38 Identities=42% Similarity=0.592 Sum_probs=34.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR 41 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~ 41 (184)
.++||+|||+|.+|+++|+.+++.|.+|+|+||....+
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~ 52 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDD 52 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCC
Confidence 46899999999999999999999999999999987654
No 119
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.42 E-value=3.6e-12 Score=99.76 Aligned_cols=34 Identities=41% Similarity=0.640 Sum_probs=32.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL 40 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~ 40 (184)
||+|||+|++|+++|+.+++.|.+|+|+||....
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~ 34 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPT 34 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence 8999999999999999999999999999998654
No 120
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.42 E-value=2e-12 Score=97.83 Aligned_cols=36 Identities=47% Similarity=0.766 Sum_probs=31.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~ 42 (184)
||+|||+|++|+++|+.+++.|.+|+|+||.+..++
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg 36 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG 36 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence 899999999999999999999999999999887544
No 121
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.41 E-value=2e-12 Score=89.26 Aligned_cols=140 Identities=27% Similarity=0.272 Sum_probs=81.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccc------------eeeecccHHHHHHHcCChHHHHhcCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGA------------AISFAPNAWLALDALGVSHKLASIYPPV 73 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (184)
-+|+|||+|++|+++|+.|++.|++|+|+||+...++.-. +..+.+....+++-. +.+.+.+.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~V---e~~~~~gl-- 76 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAV---EALRDDGL-- 76 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHH---HHHHhCCc--
Confidence 3799999999999999999999999999999876654311 111222222222211 11111111
Q ss_pred cceEEEecCCCceeeeecCC--CCCCC---CCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEec
Q 030042 74 NRISVTNLGTGATQETSLTG--KFGDG---SGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVD 148 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~ 148 (184)
+..|... .+.+.+ ....+ +.........+.+.|.. ..+|+++++|+.+...+ +. |++.+++
T Consensus 77 --V~~W~~~-----~~~~~~~~~~~~~d~~pyvg~pgmsalak~LAt---dL~V~~~~rVt~v~~~~---~~-W~l~~~~ 142 (331)
T COG3380 77 --VDVWTPA-----VWTFTGDGSPPRGDEDPYVGEPGMSALAKFLAT---DLTVVLETRVTEVARTD---ND-WTLHTDD 142 (331)
T ss_pred --eeecccc-----ccccccCCCCCCCCCCccccCcchHHHHHHHhc---cchhhhhhhhhhheecC---Ce-eEEEecC
Confidence 1111000 001110 00011 11112234556665544 45799999999999875 45 9999977
Q ss_pred C-cEEEeeEEEecCCcc
Q 030042 149 G-TIVKTKFLIGCDGIH 164 (184)
Q Consensus 149 g-~~~~a~~vI~a~G~~ 164 (184)
| ....+|.||+|--+.
T Consensus 143 g~~~~~~d~vvla~PAP 159 (331)
T COG3380 143 GTRHTQFDDVVLAIPAP 159 (331)
T ss_pred CCcccccceEEEecCCC
Confidence 6 567899999987554
No 122
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.41 E-value=5.9e-12 Score=99.30 Aligned_cols=38 Identities=39% Similarity=0.368 Sum_probs=34.6
Q ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042 3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL 40 (184)
Q Consensus 3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~ 40 (184)
+.++||+|||+|.+|+++|+.+++.|.+|+|+||....
T Consensus 6 ~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~ 43 (626)
T PRK07803 6 RHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG 43 (626)
T ss_pred ceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 34689999999999999999999999999999998654
No 123
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=99.40 E-value=7.2e-12 Score=82.17 Aligned_cols=41 Identities=12% Similarity=0.226 Sum_probs=33.9
Q ss_pred CCeee-eCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCc
Q 030042 119 NGTIH-FSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGI 163 (184)
Q Consensus 119 ~~~i~-~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~ 163 (184)
++++. ...+|+++...+ ++ +.+.+.+|..+.+|.||+|+|.
T Consensus 114 ~i~v~~~~~~V~~i~~~~---~~-~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 114 GITVRHVRAEVVDIRRDD---DG-YRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CcEEEEEeeEEEEEEEcC---Cc-EEEEECCCCEEEeCEEEECCCC
Confidence 45543 467999999886 55 8899999999999999999996
No 124
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.40 E-value=7.3e-12 Score=98.06 Aligned_cols=38 Identities=34% Similarity=0.483 Sum_probs=33.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLR 41 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~ 41 (184)
.++||+|||+|.+|+++|+.+++. |.+|+|+||....+
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~ 42 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMR 42 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCC
Confidence 578999999999999999999987 47999999986544
No 125
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.40 E-value=6e-12 Score=98.13 Aligned_cols=37 Identities=41% Similarity=0.750 Sum_probs=34.9
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
|+ +++||+|||+|.+|+++|+.+++.|.+|+||||.+
T Consensus 1 ~~-~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 1 MA-MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CC-ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 56 57999999999999999999999999999999988
No 126
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.39 E-value=6.7e-12 Score=96.11 Aligned_cols=39 Identities=41% Similarity=0.687 Sum_probs=35.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~ 43 (184)
.+||++||||||+|+++|..|+++|.+|+|+|+.. .++.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~ 41 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGT 41 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccc
Confidence 47999999999999999999999999999999876 5544
No 127
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.39 E-value=1.2e-11 Score=97.07 Aligned_cols=40 Identities=38% Similarity=0.397 Sum_probs=33.9
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR 41 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~ 41 (184)
|...++||+|||+|++|+++|+.+++. .+|+|+||....+
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~ 40 (583)
T PRK08205 1 MQQHRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTR 40 (583)
T ss_pred CcceeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCC
Confidence 333578999999999999999999976 8999999976543
No 128
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.39 E-value=9.7e-12 Score=95.72 Aligned_cols=152 Identities=23% Similarity=0.219 Sum_probs=82.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccc----ee--eec--ccHHHHHH----Hc-C----------
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGA----AI--SFA--PNAWLALD----AL-G---------- 61 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~----~~--~~~--~~~~~~~~----~~-~---------- 61 (184)
++||+|||+|++|+++|+.+++.|. |+|+||.+..++.+. ++ .+. ......++ .. +
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 5799999999999999999999997 999999865433211 11 111 11111111 10 0
Q ss_pred ------ChHHHHhcCCCccceEEEecCCCceeeeecCCCCCCCCCCee---eeHHHHHHHHHhhC---CCCeeeeCceEE
Q 030042 62 ------VSHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRF---IHRKKLLQTLADEL---PNGTIHFSSKIA 129 (184)
Q Consensus 62 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~---~~~~i~~~~~v~ 129 (184)
..+++.+.+.++. ....+......+... ..+.... .....+.+.|.+.+ .+++++.++.++
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~-----~~~~g~~~~~~~gg~--~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~ 153 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFD-----RHEQGSYALTREGGH--SYRRILHAADATGREVITTLVKKALNHPNIRIIEGENAL 153 (488)
T ss_pred HHhHHHHHHHHHHcCCcce-----eCCCCCccccCCCCc--CCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEee
Confidence 1122222222221 101110000000000 0000000 12346666666654 378999999999
Q ss_pred EEeccCCCCCcceEEEEec-C--cEEEeeEEEecCCcchHH
Q 030042 130 AIDSQTHDGSSPVFIHLVD-G--TIVKTKFLIGCDGIHSTV 167 (184)
Q Consensus 130 ~~~~~~~~~~~~~~v~~~~-g--~~~~a~~vI~a~G~~s~~ 167 (184)
++..++ +.. ..+...+ + ..+.++.||+|||+++.+
T Consensus 154 ~l~~~~--g~v-~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 154 DLLIET--GRV-VGVWVWNRETVETCHADAVVLATGGAGKL 191 (488)
T ss_pred eeeccC--CEE-EEEEEEECCcEEEEEcCEEEECCCcccCC
Confidence 998654 232 3343332 2 368999999999998864
No 129
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.39 E-value=1.2e-11 Score=95.46 Aligned_cols=152 Identities=18% Similarity=0.167 Sum_probs=82.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccc----eee--ec--ccHHHHHHHc-----C---------
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGA----AIS--FA--PNAWLALDAL-----G--------- 61 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~----~~~--~~--~~~~~~~~~~-----~--------- 61 (184)
.++||+|||+|.+|+++|+.+++ |.+|+|+||.+..++.+. ++. .. ......++.. +
T Consensus 2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~ 80 (510)
T PRK08071 2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRY 80 (510)
T ss_pred CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHH
Confidence 47899999999999999999976 899999999876543321 111 11 1111111111 0
Q ss_pred -------ChHHHHhcCCCccceEEEecCCCceeeeecCCCCCCCCCCe----eeeHHHHHHHHHhhCC-CCeeeeCceEE
Q 030042 62 -------VSHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPR----FIHRKKLLQTLADELP-NGTIHFSSKIA 129 (184)
Q Consensus 62 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~l~~~~~-~~~i~~~~~v~ 129 (184)
..+++.+.+.+++.- .++......+... ..+... -.....+.+.|.+.+. +++++.++.++
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~-----~~g~~~~~~~gg~--~~~r~~~~~gd~~g~~i~~~L~~~~~~gV~i~~~~~v~ 153 (510)
T PRK08071 81 LVEEGPKEIQELIENGMPFDGD-----ETGPLHLGKEGAH--RKRRILHAGGDATGKNLLEHLLQELVPHVTVVEQEMVI 153 (510)
T ss_pred HHHHHHHHHHHHHHcCCccccC-----CCCceeeccCcCc--cCCeEEecCCCCcHHHHHHHHHHHHhcCCEEEECeEhh
Confidence 112222333332210 0110000000000 000000 0123456677766654 89999999999
Q ss_pred EEeccCCCCCcceEEEE--ecCc--EEEeeEEEecCCcchH
Q 030042 130 AIDSQTHDGSSPVFIHL--VDGT--IVKTKFLIGCDGIHST 166 (184)
Q Consensus 130 ~~~~~~~~~~~~~~v~~--~~g~--~~~a~~vI~a~G~~s~ 166 (184)
++...+ +.. ..+.. .+++ .+.||.||+|||+.+.
T Consensus 154 ~Li~~~--g~v-~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 154 DLIIEN--GRC-IGVLTKDSEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred heeecC--CEE-EEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence 987654 332 33433 2343 6889999999999764
No 130
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.39 E-value=2.4e-11 Score=95.33 Aligned_cols=37 Identities=41% Similarity=0.503 Sum_probs=33.8
Q ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
+.++||+|||+|.+|+++|+.+++.|.+|+|+||...
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~ 46 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFP 46 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 3568999999999999999999999999999999754
No 131
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.39 E-value=4.3e-12 Score=100.42 Aligned_cols=41 Identities=37% Similarity=0.631 Sum_probs=36.9
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR 41 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~ 41 (184)
|...++||+|||||.+|+++|+.+++.|.+|+|+||.+..+
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~ 41 (657)
T PRK08626 1 MKIIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR 41 (657)
T ss_pred CCceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 66678999999999999999999999999999999976543
No 132
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.38 E-value=1.1e-11 Score=96.58 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=32.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
.++||+|||+|.+|+++|+.+ +.|.+|+|+||.+.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~ 40 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF 40 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence 468999999999999999999 89999999999764
No 133
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.38 E-value=5.8e-12 Score=97.35 Aligned_cols=145 Identities=21% Similarity=0.224 Sum_probs=83.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC-Cccceeeecc---c-HHHHHHHcC-ChHHHHhcCCCccceEEE
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR-GTGAAISFAP---N-AWLALDALG-VSHKLASIYPPVNRISVT 79 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~-~~~~~~~~~~---~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 79 (184)
|||+|||+|++|+.+|..+++.|.+|+++|+..... ..++.....- . ..+.+..+| ......+.... .+...
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i--~~r~l 78 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGL--QFRVL 78 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhce--eheec
Confidence 699999999999999999999999999999874321 1111111100 0 011112221 11111110000 00111
Q ss_pred ecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeE
Q 030042 80 NLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKF 156 (184)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~ 156 (184)
.... +...+++. ..+++..+.+.+.+.+. ++.++ +.+|+++...++ +.. ..|.+.+|..+.|+.
T Consensus 79 n~sk---------gpAV~~~R-aQVDr~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~-g~V-~GV~t~~G~~I~Ad~ 145 (617)
T TIGR00136 79 NSSK---------GPAVRATR-AQIDKVLYRKAMRNALENQPNLSLF-QGEVEDLILEDN-DEI-KGVVTQDGLKFRAKA 145 (617)
T ss_pred ccCC---------CCcccccH-HhCCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEecC-CcE-EEEEECCCCEEECCE
Confidence 0000 00111211 36778888877766553 56665 457888765421 244 778888888999999
Q ss_pred EEecCCcch
Q 030042 157 LIGCDGIHS 165 (184)
Q Consensus 157 vI~a~G~~s 165 (184)
||+|+|.+.
T Consensus 146 VILATGtfL 154 (617)
T TIGR00136 146 VIITTGTFL 154 (617)
T ss_pred EEEccCccc
Confidence 999999985
No 134
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.38 E-value=1.1e-11 Score=94.77 Aligned_cols=34 Identities=29% Similarity=0.528 Sum_probs=32.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
+||+|||+|++|+++|+.+++.|.+|+|+||.+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6999999999999999999999999999999754
No 135
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.38 E-value=9.1e-12 Score=98.07 Aligned_cols=38 Identities=39% Similarity=0.482 Sum_probs=34.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR 41 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~ 41 (184)
.++||+|||||.+|+++|+.+++.|.+|+|+||....+
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~ 65 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTR 65 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCC
Confidence 36899999999999999999999999999999987543
No 136
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.37 E-value=3.6e-11 Score=93.84 Aligned_cols=42 Identities=38% Similarity=0.644 Sum_probs=37.5
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~ 42 (184)
|..+++||+|||+|++|+++|+.++++|.+|+||||.+..++
T Consensus 3 ~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG 44 (557)
T PRK07843 3 MTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG 44 (557)
T ss_pred CCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCc
Confidence 445689999999999999999999999999999999876654
No 137
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.37 E-value=1.7e-11 Score=95.92 Aligned_cols=155 Identities=17% Similarity=0.127 Sum_probs=84.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCCCccc----ee--eec--ccHHHHHHHc---C---------
Q 030042 4 VEKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGTGA----AI--SFA--PNAWLALDAL---G--------- 61 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~~~~~----~~--~~~--~~~~~~~~~~---~--------- 61 (184)
.++||+|||||++|+++|+.+++. |.+|+|+||....++.+. +. ... ......++.. +
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv 81 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVV 81 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHH
Confidence 468999999999999999999986 579999999876543221 11 010 1111111110 0
Q ss_pred ---------ChHHHHhcCCCccceEEEecCCCceeeeecCCCCCCCCCCee--eeHHHHHHHHHhhC---CCCeeeeCce
Q 030042 62 ---------VSHKLASIYPPVNRISVTNLGTGATQETSLTGKFGDGSGPRF--IHRKKLLQTLADEL---PNGTIHFSSK 127 (184)
Q Consensus 62 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~---~~~~i~~~~~ 127 (184)
..+++.+.+.++.. ..++......+.... ....... ..-..+...|.+.+ ++++++.++.
T Consensus 82 ~~l~~~s~~~i~~L~~~Gv~f~~-----~~~g~~~~~~~gg~~-~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~ 155 (580)
T TIGR01176 82 EYFVAEAPKEMVQLEHWGCPWSR-----KPDGRVNVRRFGGMK-KERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWF 155 (580)
T ss_pred HHHHHHhHHHHHHHHHcCCccEe-----cCCCceeeeccCCcc-CCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeE
Confidence 11222233332221 111111001111100 0000000 12345666666654 3689999999
Q ss_pred EEEEeccCCCCCcceEE---EEecC--cEEEeeEEEecCCcchHH
Q 030042 128 IAAIDSQTHDGSSPVFI---HLVDG--TIVKTKFLIGCDGIHSTV 167 (184)
Q Consensus 128 v~~~~~~~~~~~~~~~v---~~~~g--~~~~a~~vI~a~G~~s~~ 167 (184)
++++...+ +.. ..+ ...+| ..+.|+.||+|||+.+.+
T Consensus 156 v~~Li~~~--g~v-~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 156 VTDLLVDD--GRV-CGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred EEEEEeeC--CEE-EEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 99998754 232 322 33466 368899999999998864
No 138
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.36 E-value=1.6e-11 Score=96.51 Aligned_cols=37 Identities=32% Similarity=0.466 Sum_probs=33.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL 40 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~ 40 (184)
.++||+|||||.+|+++|+.+++.|.+|+|+||....
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~ 47 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPT 47 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 3589999999999999999999999999999997643
No 139
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.36 E-value=2e-12 Score=99.00 Aligned_cols=43 Identities=35% Similarity=0.613 Sum_probs=37.4
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG 44 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~ 44 (184)
|+ .+||++||||||+|+.+|..|++.|.+|+|+|+.+..++..
T Consensus 1 ~~-~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c 43 (471)
T PRK06467 1 ME-IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVC 43 (471)
T ss_pred CC-ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccc
Confidence 44 47999999999999999999999999999999976665543
No 140
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.36 E-value=4.3e-12 Score=96.63 Aligned_cols=36 Identities=33% Similarity=0.466 Sum_probs=33.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
++|||+|||||++|+.+|+.|+++|.+|+|||+.+.
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~ 37 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNA 37 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCC
Confidence 579999999999999999999999999999999753
No 141
>PRK14694 putative mercuric reductase; Provisional
Probab=99.36 E-value=1.5e-12 Score=99.78 Aligned_cols=42 Identities=26% Similarity=0.438 Sum_probs=36.5
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~ 43 (184)
|+..+|||+|||||++|+++|..|++.|.+|+|||+. ..++.
T Consensus 2 ~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGt 43 (468)
T PRK14694 2 MSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGT 43 (468)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccc
Confidence 4556899999999999999999999999999999986 44444
No 142
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.36 E-value=3.8e-12 Score=100.08 Aligned_cols=36 Identities=33% Similarity=0.602 Sum_probs=33.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGL 40 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~ 40 (184)
++||+|||||++|+++|+.+++. |.+|+|+||....
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~ 48 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK 48 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence 58999999999999999999998 9999999998653
No 143
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.35 E-value=2e-11 Score=94.26 Aligned_cols=63 Identities=21% Similarity=0.335 Sum_probs=50.4
Q ss_pred HHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchHHHhhhC
Q 030042 107 KKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLG 172 (184)
Q Consensus 107 ~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~~~~~~~ 172 (184)
..+.+.|.+.++ |++|+++++|+++...+ +.. +.|.+.+|+.++||.||.|.|.+..+.+.++
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~--~~~-~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~ 293 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILEN--GKA-VGVKLADGEKIYAKRIVSNATRWDTFGKLLK 293 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecC--CcE-EEEEeCCCCEEEcCEEEECCChHHHHHHhCC
Confidence 456666666664 89999999999998765 344 7788888988999999999999888777664
No 144
>PLN02815 L-aspartate oxidase
Probab=99.35 E-value=1.6e-11 Score=96.09 Aligned_cols=38 Identities=32% Similarity=0.492 Sum_probs=34.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~ 42 (184)
.++||+|||+|.+|+++|+.+++.| +|+|+||.+..++
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg 65 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHES 65 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCC
Confidence 4689999999999999999999999 9999999876544
No 145
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.34 E-value=4.1e-11 Score=94.03 Aligned_cols=38 Identities=24% Similarity=0.418 Sum_probs=34.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR 41 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~ 41 (184)
+.+||+|||+|++|+++|+.+++.|.+|+|+||.+..+
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~ 39 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR 39 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 56899999999999999999999999999999977543
No 146
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.34 E-value=4.5e-11 Score=93.73 Aligned_cols=157 Identities=22% Similarity=0.257 Sum_probs=85.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc----cee--eec---ccHHH-HHHHc-------------
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG----AAI--SFA---PNAWL-ALDAL------------- 60 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~----~~~--~~~---~~~~~-~~~~~------------- 60 (184)
.++||+|||+|.+|+++|+.+++.|.+|+|+||....++.+ .++ ... ..+.+ .++..
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v 85 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI 85 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 46899999999999999999999999999999986543311 011 000 11111 11110
Q ss_pred --------CChHHHHhcCCCccceEEEecCCCceeeeecCCCCC-C-C-CCCee-----eeHHHHHHHHHhhCC--CCee
Q 030042 61 --------GVSHKLASIYPPVNRISVTNLGTGATQETSLTGKFG-D-G-SGPRF-----IHRKKLLQTLADELP--NGTI 122 (184)
Q Consensus 61 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~~~-----~~~~~l~~~l~~~~~--~~~i 122 (184)
...+++.+.+.+++.. .++......+..... . + ..... -.-..+...|.+.+. ++++
T Consensus 86 ~~~~~~s~~~i~~L~~~Gv~f~~~-----~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i 160 (588)
T PRK08958 86 EYMCKTGPEAILELEHMGLPFSRL-----DDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTI 160 (588)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccC-----CCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCEE
Confidence 1123333334433211 111110001111000 0 0 00000 013456777776553 7899
Q ss_pred eeCceEEEEeccCCCCCcceEEE---EecCc--EEEeeEEEecCCcchHH
Q 030042 123 HFSSKIAAIDSQTHDGSSPVFIH---LVDGT--IVKTKFLIGCDGIHSTV 167 (184)
Q Consensus 123 ~~~~~v~~~~~~~~~~~~~~~v~---~~~g~--~~~a~~vI~a~G~~s~~ 167 (184)
+.++.++++..+++ +.. ..+. ..+|+ .+.|+.||+|||+.+.+
T Consensus 161 ~~~~~~~~Li~~~~-g~v-~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 161 FSEWYALDLVKNQD-GAV-VGCTAICIETGEVVYFKARATVLATGGAGRI 208 (588)
T ss_pred EeCcEEEEEEECCC-CEE-EEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence 99999999987531 333 3343 23553 67899999999998754
No 147
>PRK10262 thioredoxin reductase; Provisional
Probab=99.34 E-value=4.1e-11 Score=87.67 Aligned_cols=112 Identities=19% Similarity=0.285 Sum_probs=69.2
Q ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042 3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG 82 (184)
Q Consensus 3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
.+.+||+||||||+|+++|..|+++|.++++||+. ..++.-. .. .
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~---~~--------------------~----------- 48 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLT---TT--------------------T----------- 48 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCcee---cC--------------------c-----------
Confidence 36789999999999999999999999999999964 3322200 00 0
Q ss_pred CCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEec
Q 030042 83 TGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGC 160 (184)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a 160 (184)
....++.. ...++...+.+.+.+... +.++.++ +|++++..+ .. +.+...++ .+.+|.||+|
T Consensus 49 ----~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~---~~-~~v~~~~~-~~~~d~vilA 112 (321)
T PRK10262 49 ----EVENWPGD------PNDLTGPLLMERMHEHATKFETEIIFD-HINKVDLQN---RP-FRLTGDSG-EYTCDALIIA 112 (321)
T ss_pred ----eECCCCCC------CCCCCHHHHHHHHHHHHHHCCCEEEee-EEEEEEecC---Ce-EEEEecCC-EEEECEEEEC
Confidence 00000100 001223344555444432 4555554 566776654 33 66665444 6899999999
Q ss_pred CCcch
Q 030042 161 DGIHS 165 (184)
Q Consensus 161 ~G~~s 165 (184)
+|...
T Consensus 113 tG~~~ 117 (321)
T PRK10262 113 TGASA 117 (321)
T ss_pred CCCCC
Confidence 99864
No 148
>PRK08275 putative oxidoreductase; Provisional
Probab=99.33 E-value=2e-11 Score=95.27 Aligned_cols=37 Identities=38% Similarity=0.576 Sum_probs=33.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGL 40 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~ 40 (184)
.++||+|||+|.+|+++|+.+++. |.+|+|+||.+..
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~ 46 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK 46 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 458999999999999999999986 6899999998753
No 149
>PRK06370 mercuric reductase; Validated
Probab=99.33 E-value=1.7e-11 Score=93.95 Aligned_cols=37 Identities=30% Similarity=0.451 Sum_probs=34.2
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKS 37 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~ 37 (184)
|-|.+||++||||||+|+++|..|++.|.+|+|+|+.
T Consensus 1 ~~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 37 (463)
T PRK06370 1 TPAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG 37 (463)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 3456899999999999999999999999999999986
No 150
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.33 E-value=4.7e-12 Score=96.95 Aligned_cols=41 Identities=37% Similarity=0.523 Sum_probs=36.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG 44 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~ 44 (184)
++||++||||||+|+.+|..+++.|.+|+|+|+....++..
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c 42 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTC 42 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeee
Confidence 46999999999999999999999999999999866666553
No 151
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.33 E-value=4.5e-12 Score=96.59 Aligned_cols=38 Identities=29% Similarity=0.472 Sum_probs=34.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~ 43 (184)
+||++||||||+|+++|..+++.|.+|+|+|+. ..++.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~ 39 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGT 39 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCce
Confidence 689999999999999999999999999999984 45544
No 152
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.32 E-value=2.6e-11 Score=95.68 Aligned_cols=37 Identities=35% Similarity=0.471 Sum_probs=34.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR 41 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~ 41 (184)
++||+|||+|.+|+++|+.+++.|.+|+|+||....+
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~ 86 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTR 86 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCC
Confidence 5899999999999999999999999999999986544
No 153
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.32 E-value=9.9e-12 Score=95.38 Aligned_cols=42 Identities=43% Similarity=0.631 Sum_probs=36.3
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG 44 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~ 44 (184)
|+ ..||++||||||+|+++|..|++.|.+|+|+|+. ..++..
T Consensus 1 ~~-~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c 42 (472)
T PRK05976 1 MA-KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTC 42 (472)
T ss_pred CC-ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcce
Confidence 44 4799999999999999999999999999999985 455543
No 154
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.32 E-value=6.8e-11 Score=92.24 Aligned_cols=39 Identities=38% Similarity=0.707 Sum_probs=35.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~ 43 (184)
+++||+|||+| +|+++|+.+++.|.+|+|+||.+..++.
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~ 53 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGS 53 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCc
Confidence 47999999999 8999999999999999999998777654
No 155
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.30 E-value=1e-10 Score=89.66 Aligned_cols=61 Identities=38% Similarity=0.477 Sum_probs=47.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhC----CCCeEEEeccCCCCCcccee-------e--------ecccHHHHHHHcCChHHH
Q 030042 6 KDVVIIGAGIAGLATALALKRL----GVEPLVLEKSDGLRGTGAAI-------S--------FAPNAWLALDALGVSHKL 66 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~----g~~v~vie~~~~~~~~~~~~-------~--------~~~~~~~~~~~~~~~~~~ 66 (184)
.||+|||||++||++|+.|+++ |.+|+|+|+++..|+..++. . -.+...++++++|+....
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~~~ 82 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLEHVL 82 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCCccc
Confidence 6999999999999999999998 99999999999886543221 1 123467778888775443
No 156
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.30 E-value=6.8e-11 Score=92.77 Aligned_cols=39 Identities=38% Similarity=0.635 Sum_probs=35.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~ 42 (184)
.++||+|||+|++|+++|+.+++.|.+|+||||.+..++
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg 49 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGG 49 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 478999999999999999999999999999999876544
No 157
>PRK09897 hypothetical protein; Provisional
Probab=99.29 E-value=2.8e-11 Score=93.28 Aligned_cols=146 Identities=14% Similarity=0.163 Sum_probs=76.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCC--CCeEEEeccCCCCCccceeeeccc--HHHHHHHc---CC---hHHHHhcCCCccc
Q 030042 6 KDVVIIGAGIAGLATALALKRLG--VEPLVLEKSDGLRGTGAAISFAPN--AWLALDAL---GV---SHKLASIYPPVNR 75 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g--~~v~vie~~~~~~~~~~~~~~~~~--~~~~~~~~---~~---~~~~~~~~~~~~~ 75 (184)
.+|+|||||++|+++|..|.+++ .+|+|||+...+ |.+..+.+. ...++... .+ .+.+.++.... .
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~---G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~-~ 77 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA---GVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQ-E 77 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC---CcceeecCCCChHHHHhcccccccCCChHHHHHHhhhh-h
Confidence 48999999999999999998764 589999997665 334444331 11111110 00 01111110000 0
Q ss_pred eEEEecCCCceeeeecCCCCCCCCCCeeeeH---HHHHHHHHhhCC--C--CeeeeCceEEEEeccCCCCCcceEEEEec
Q 030042 76 ISVTNLGTGATQETSLTGKFGDGSGPRFIHR---KKLLQTLADELP--N--GTIHFSSKIAAIDSQTHDGSSPVFIHLVD 148 (184)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~l~~~~~--~--~~i~~~~~v~~~~~~~~~~~~~~~v~~~~ 148 (184)
............... . ..+....+.. ....+.+.+.++ + +.++.+++|+++...+ +. +.+.+.+
T Consensus 78 ~~~~~~~g~~~~~l~--~---~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~---~g-~~V~t~~ 148 (534)
T PRK09897 78 DSHLQRYGVKKETLH--D---RQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN---AG-VMLATNQ 148 (534)
T ss_pred HHHHHhcCCcceeec--C---CccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC---CE-EEEEECC
Confidence 000000000000000 0 0011111111 222333334332 3 5677888999998775 44 7788755
Q ss_pred -CcEEEeeEEEecCCcc
Q 030042 149 -GTIVKTKFLIGCDGIH 164 (184)
Q Consensus 149 -g~~~~a~~vI~a~G~~ 164 (184)
+..+.+|.||+|+|..
T Consensus 149 gg~~i~aD~VVLAtGh~ 165 (534)
T PRK09897 149 DLPSETFDLAVIATGHV 165 (534)
T ss_pred CCeEEEcCEEEECCCCC
Confidence 4689999999999974
No 158
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.29 E-value=8.9e-11 Score=98.33 Aligned_cols=40 Identities=30% Similarity=0.599 Sum_probs=36.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~ 43 (184)
.++||+|||+|.+|+++|+.+++.|.+|+|+||.+..++.
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN 447 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 4689999999999999999999999999999998776543
No 159
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.29 E-value=4.7e-11 Score=92.96 Aligned_cols=38 Identities=29% Similarity=0.379 Sum_probs=33.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~ 42 (184)
.++||+|||+|.+|+++|+.++ .|.+|+|+||.+..++
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg 45 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTS 45 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCC
Confidence 5789999999999999999996 4999999999876543
No 160
>PLN02507 glutathione reductase
Probab=99.27 E-value=1.9e-11 Score=94.23 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEec
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEK 36 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~ 36 (184)
+||++||||||+|+.+|..+++.|.+|+|+|+
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 58999999999999999999999999999997
No 161
>PRK06116 glutathione reductase; Validated
Probab=99.27 E-value=1.5e-11 Score=93.92 Aligned_cols=41 Identities=32% Similarity=0.534 Sum_probs=35.5
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~ 43 (184)
|+ .+||++||||||+|+.+|..|++.|.+|+|+|+. ..++.
T Consensus 1 m~-~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~ 41 (450)
T PRK06116 1 MT-KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGT 41 (450)
T ss_pred CC-CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhh
Confidence 54 4799999999999999999999999999999985 44443
No 162
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.27 E-value=1.3e-11 Score=94.03 Aligned_cols=39 Identities=33% Similarity=0.526 Sum_probs=34.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~ 43 (184)
++|||+||||||+|+.+|..|++.|.+|+|+|+. ..++.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~ 39 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGT 39 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccc
Confidence 4699999999999999999999999999999985 35544
No 163
>PLN02568 polyamine oxidase
Probab=99.27 E-value=3.1e-10 Score=88.09 Aligned_cols=53 Identities=28% Similarity=0.493 Sum_probs=44.6
Q ss_pred HHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCc
Q 030042 107 KKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGI 163 (184)
Q Consensus 107 ~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~ 163 (184)
..|.+.|.+.+++..|+++++|+.|...+ ++ +.|.+.+|+++.||.||+|.-.
T Consensus 242 ~~Li~~La~~L~~~~I~ln~~V~~I~~~~---~~-v~V~~~dG~~~~aD~VIvTvPl 294 (539)
T PLN02568 242 LSVIEALASVLPPGTIQLGRKVTRIEWQD---EP-VKLHFADGSTMTADHVIVTVSL 294 (539)
T ss_pred HHHHHHHHhhCCCCEEEeCCeEEEEEEeC---Ce-EEEEEcCCCEEEcCEEEEcCCH
Confidence 45788888887666799999999999875 45 8899999988999999999854
No 164
>PRK12839 hypothetical protein; Provisional
Probab=99.27 E-value=3.3e-10 Score=88.61 Aligned_cols=39 Identities=38% Similarity=0.559 Sum_probs=35.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~ 42 (184)
.++||+|||+|++|+++|+.+++.|.+|+|+|+....++
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg 45 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGG 45 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 478999999999999999999999999999999876554
No 165
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.26 E-value=3.2e-11 Score=91.78 Aligned_cols=37 Identities=32% Similarity=0.481 Sum_probs=34.2
Q ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
|++|||+||||||+|+++|..|++.|.+|+|+|+.+.
T Consensus 1 ~~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~ 37 (438)
T PRK07251 1 MLTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA 37 (438)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence 3579999999999999999999999999999999764
No 166
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.26 E-value=6.4e-11 Score=91.64 Aligned_cols=34 Identities=35% Similarity=0.461 Sum_probs=30.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
.++||+|||+|.+|+++|+.++ +.+|+|+||.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 4689999999999999999997 569999999876
No 167
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.26 E-value=3.9e-10 Score=84.69 Aligned_cols=61 Identities=33% Similarity=0.483 Sum_probs=50.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCC--CCeEEEeccCCCCCccce--------------eeec-ccHHHHHHHcCChHHHH
Q 030042 7 DVVIIGAGIAGLATALALKRLG--VEPLVLEKSDGLRGTGAA--------------ISFA-PNAWLALDALGVSHKLA 67 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g--~~v~vie~~~~~~~~~~~--------------~~~~-~~~~~~~~~~~~~~~~~ 67 (184)
.++|||||++||++||.|++++ .+++|+|+++..++.-++ .... +...+.+.++|+.+.+.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~ 79 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLL 79 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHhhc
Confidence 6899999999999999999999 899999999888764321 1122 66788889999988887
No 168
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.26 E-value=2.7e-11 Score=93.06 Aligned_cols=35 Identities=37% Similarity=0.597 Sum_probs=32.9
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEec
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEK 36 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~ 36 (184)
|+ ++||++||||||+|+++|..+++.|.+|+|+|+
T Consensus 1 ~~-~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 1 MS-KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred CC-cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 54 479999999999999999999999999999998
No 169
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.25 E-value=2.6e-10 Score=89.08 Aligned_cols=40 Identities=43% Similarity=0.727 Sum_probs=35.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~ 43 (184)
.++||+|||+|.+|+++|+.+++.|.+|+|||+....++.
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~ 44 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGS 44 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence 4789999999999999999999999999999998765543
No 170
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.25 E-value=2.2e-11 Score=93.28 Aligned_cols=39 Identities=38% Similarity=0.596 Sum_probs=34.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG 44 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~ 44 (184)
+|||+|||||++|+++|..|++.|.+|+|+|+ +..++..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~ 39 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTC 39 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCce
Confidence 48999999999999999999999999999999 6666543
No 171
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.25 E-value=1.6e-10 Score=90.01 Aligned_cols=38 Identities=42% Similarity=0.487 Sum_probs=33.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~ 42 (184)
.++||+|||+|.+|+++|+.+++. .+|+|+||....++
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g 44 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEG 44 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCC
Confidence 368999999999999999999886 79999999876443
No 172
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.25 E-value=4e-10 Score=88.43 Aligned_cols=40 Identities=40% Similarity=0.732 Sum_probs=36.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~ 43 (184)
.++||+|||+|++|+++|+.++++|.+|+|+||....++.
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~ 47 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGT 47 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Confidence 4789999999999999999999999999999998866543
No 173
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.24 E-value=1.3e-10 Score=89.89 Aligned_cols=63 Identities=19% Similarity=0.388 Sum_probs=48.7
Q ss_pred HHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchHHHhhhC
Q 030042 107 KKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWLG 172 (184)
Q Consensus 107 ~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~~~~~~~ 172 (184)
..+.+.|.+.++ |++|+++++|+++...+ +.. +.|.+.+|+++.||.||.|.+......++++
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~--~~~-~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~ 283 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEG--GRA-TAVHLADGERLDADAVVSNADLHHTYRRLLP 283 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeC--CEE-EEEEECCCCEEECCEEEECCcHHHHHHHhcC
Confidence 456666666554 88999999999998765 233 7788888888999999999998776655553
No 174
>PRK13748 putative mercuric reductase; Provisional
Probab=99.24 E-value=1.4e-10 Score=90.89 Aligned_cols=39 Identities=31% Similarity=0.445 Sum_probs=35.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~ 43 (184)
.+||++||||||+|+++|..|++.|.+|+|||+. ..++.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~ 135 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGT 135 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceee
Confidence 4699999999999999999999999999999987 55554
No 175
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=99.24 E-value=6.1e-11 Score=91.05 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=65.7
Q ss_pred CCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH-HHhhhCCCC
Q 030042 99 SGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST-VAWWLGLSE 175 (184)
Q Consensus 99 ~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~-~~~~~~~~~ 175 (184)
|.-..+++..+.+.|...+. |+.|..++.|+++....+ +. +.|+|..| .+++..||+|+|.|.+ +.++.+...
T Consensus 179 P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~--~~-~gVeT~~G-~iet~~~VNaaGvWAr~Vg~m~gvkv 254 (856)
T KOG2844|consen 179 PGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETD--KF-GGVETPHG-SIETECVVNAAGVWAREVGAMAGVKV 254 (856)
T ss_pred CCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecC--Cc-cceeccCc-ceecceEEechhHHHHHhhhhcCCcc
Confidence 34457889999999988876 899999999999987652 43 78999888 6999999999999985 667778888
Q ss_pred Ccccceec
Q 030042 176 PLNVNIGC 183 (184)
Q Consensus 176 ~~~~~~~~ 183 (184)
|-++-+.+
T Consensus 255 PL~p~~H~ 262 (856)
T KOG2844|consen 255 PLVPMHHA 262 (856)
T ss_pred cceeeeee
Confidence 87775543
No 176
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.23 E-value=2.3e-10 Score=89.77 Aligned_cols=39 Identities=38% Similarity=0.640 Sum_probs=35.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~ 42 (184)
.++||+|||+|++|+++|+.++++|.+|+|+||.+..++
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG 48 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence 468999999999999999999999999999999876654
No 177
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.23 E-value=9.9e-11 Score=90.67 Aligned_cols=38 Identities=34% Similarity=0.572 Sum_probs=34.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~ 42 (184)
.++||+|||+| +|+++|+.+++.|.+|+|+||.+..++
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg 43 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 43 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 47899999999 999999999999999999999876543
No 178
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.23 E-value=2e-10 Score=90.41 Aligned_cols=33 Identities=30% Similarity=0.490 Sum_probs=30.6
Q ss_pred EEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042 8 VVIIGAGIAGLATALALKRLGVEPLVLEKSDGL 40 (184)
Q Consensus 8 v~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~ 40 (184)
|+|||+|++|+++|+.+++.|.+|+|+||.+.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 689999999999999999999999999998733
No 179
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.21 E-value=2.6e-10 Score=87.37 Aligned_cols=40 Identities=43% Similarity=0.603 Sum_probs=35.2
Q ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042 3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43 (184)
Q Consensus 3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~ 43 (184)
|++||++|||||++|+++|..|++.|.+|+|||+ ...++.
T Consensus 1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~ 40 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGT 40 (460)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccc
Confidence 3579999999999999999999999999999999 445444
No 180
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.21 E-value=1.6e-09 Score=82.76 Aligned_cols=37 Identities=46% Similarity=0.718 Sum_probs=34.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCC--CCeEEEeccCCCCCc
Q 030042 7 DVVIIGAGIAGLATALALKRLG--VEPLVLEKSDGLRGT 43 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g--~~v~vie~~~~~~~~ 43 (184)
+|+|||||++||++|+.|++.| .+|+|+|+.+..|+.
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr 40 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGK 40 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcce
Confidence 6999999999999999999987 899999999988764
No 181
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.21 E-value=2.6e-11 Score=91.57 Aligned_cols=45 Identities=40% Similarity=0.599 Sum_probs=38.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceee
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAIS 48 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~ 48 (184)
++||++|||+||+|..+|..+++.|.+|+++|+....++..-..+
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~G 47 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVG 47 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeC
Confidence 579999999999999999999999999999999876665543333
No 182
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.21 E-value=5.8e-10 Score=85.55 Aligned_cols=58 Identities=10% Similarity=0.177 Sum_probs=41.7
Q ss_pred HHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchHHHhhh
Q 030042 109 LLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWL 171 (184)
Q Consensus 109 l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~~~~~~ 171 (184)
+.+.|.+.++..+|+++++|++++..+ +. +.|.+.+|+++.||.||.|.-. ....+.+
T Consensus 228 l~~~l~~~l~~~~i~~~~~V~~I~~~~---~~-~~v~~~~g~~~~ad~VI~a~p~-~~~~~ll 285 (463)
T PRK12416 228 IIDRLEEVLTETVVKKGAVTTAVSKQG---DR-YEISFANHESIQADYVVLAAPH-DIAETLL 285 (463)
T ss_pred HHHHHHHhcccccEEcCCEEEEEEEcC---CE-EEEEECCCCEEEeCEEEECCCH-HHHHhhc
Confidence 445555554334699999999999876 44 7888888888999999999843 3334444
No 183
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.20 E-value=1.8e-10 Score=87.52 Aligned_cols=62 Identities=16% Similarity=0.089 Sum_probs=42.4
Q ss_pred HHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEe-cCcEEEeeEEEecCCcchHHHh
Q 030042 107 KKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLV-DGTIVKTKFLIGCDGIHSTVAW 169 (184)
Q Consensus 107 ~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~-~g~~~~a~~vI~a~G~~s~~~~ 169 (184)
..+.+.|.+.++ +++++++++|+++..+++++.. +.|... ++..+.+|.||+|+|..+..++
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v-~gv~~~~~~~~i~ak~VIlAtGG~~~n~~ 187 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAH-DGPLTTVGTHRITTQALVLAAGGLGANRD 187 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeE-EEEEEcCCcEEEEcCEEEEcCCCcccCHH
Confidence 456666666554 8999999999999875211222 444443 3357999999999998765433
No 184
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.19 E-value=1.2e-09 Score=80.84 Aligned_cols=41 Identities=41% Similarity=0.673 Sum_probs=37.5
Q ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042 3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43 (184)
Q Consensus 3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~ 43 (184)
++.+||+|||+|.+||++|+.|.+.|++|+|+|.++..++.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR 45 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGR 45 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCce
Confidence 35789999999999999999999999999999999887654
No 185
>PLN02268 probable polyamine oxidase
Probab=99.17 E-value=7.9e-10 Score=84.20 Aligned_cols=38 Identities=39% Similarity=0.628 Sum_probs=34.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~ 43 (184)
.+|+|||||++||++|+.|.+.|.+|+|+|+++..++.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGr 38 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGR 38 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCce
Confidence 37999999999999999999999999999999888654
No 186
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.17 E-value=1.5e-09 Score=85.22 Aligned_cols=40 Identities=40% Similarity=0.648 Sum_probs=35.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~ 43 (184)
.++||+|||+|++|+++|+.++++|.+|+|+|+....++.
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~ 54 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGT 54 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Confidence 3589999999999999999999999999999998765543
No 187
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.17 E-value=3.7e-11 Score=82.02 Aligned_cols=32 Identities=59% Similarity=0.854 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
||+|||||++|+.+|..|++.+.+++++|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999999999998754
No 188
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.16 E-value=2.4e-10 Score=88.60 Aligned_cols=41 Identities=39% Similarity=0.541 Sum_probs=36.8
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR 41 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~ 41 (184)
|...++||+|||||.+|+.+|..+++.|.+|+++||.+..+
T Consensus 2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 34468999999999999999999999999999999987654
No 189
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.16 E-value=9.3e-10 Score=90.34 Aligned_cols=36 Identities=39% Similarity=0.592 Sum_probs=33.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
.++||+|||||.+|+++|+.+++.|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 468999999999999999999999999999999775
No 190
>PRK07233 hypothetical protein; Provisional
Probab=99.16 E-value=3.9e-10 Score=85.71 Aligned_cols=38 Identities=45% Similarity=0.677 Sum_probs=35.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG 44 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~ 44 (184)
+|+|||||++||++|+.|++.|.+|+|+|+.+.+++..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~ 38 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLA 38 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCce
Confidence 58999999999999999999999999999999887643
No 191
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.15 E-value=1.9e-10 Score=88.23 Aligned_cols=39 Identities=36% Similarity=0.569 Sum_probs=34.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~ 43 (184)
++||++||||||+|+++|..|++.|.+|+|+|+. ..++.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~ 41 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGV 41 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCc
Confidence 4699999999999999999999999999999985 34433
No 192
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=99.15 E-value=8.7e-10 Score=78.09 Aligned_cols=171 Identities=22% Similarity=0.260 Sum_probs=102.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCC--Ccc-------ceeeecccHHHHH-HHcCC---hHHHHh
Q 030042 4 VEKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLR--GTG-------AAISFAPNAWLAL-DALGV---SHKLAS 68 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~--~~~-------~~~~~~~~~~~~~-~~~~~---~~~~~~ 68 (184)
+.||.+|||||+.|++.|.+|.-+ +.+|.|+|+..... .+| .++.+.|.++..- ..-|. +....+
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~e 126 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCDE 126 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhhh
Confidence 579999999999999999998755 88999999976542 222 3555666544331 11110 011111
Q ss_pred cCCC------------------------------ccceEEEecCCCceeeeecC-CCCCCCCCCeeeeHHHHHHHHHhhC
Q 030042 69 IYPP------------------------------VNRISVTNLGTGATQETSLT-GKFGDGSGPRFIHRKKLLQTLADEL 117 (184)
Q Consensus 69 ~~~~------------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~ 117 (184)
...+ ..++.++...+-...+.... -...+.+....++...+...+-+.+
T Consensus 127 ~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~edF 206 (453)
T KOG2665|consen 127 KKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFGEDF 206 (453)
T ss_pred cCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHHHHHH
Confidence 1111 11222222111111110000 1123445566788888777777766
Q ss_pred C--CCeeeeCceEEEEeccCCCCCc-ceEEEEecCcEEEeeEEEecCCcch-HHHhhhCCC
Q 030042 118 P--NGTIHFSSKIAAIDSQTHDGSS-PVFIHLVDGTIVKTKFLIGCDGIHS-TVAWWLGLS 174 (184)
Q Consensus 118 ~--~~~i~~~~~v~~~~~~~~~~~~-~~~v~~~~g~~~~a~~vI~a~G~~s-~~~~~~~~~ 174 (184)
+ +.++..|-++.++..+.+.--. .++|....+++++++.||-|+|..| ++....+..
T Consensus 207 ~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~sgc~ 267 (453)
T KOG2665|consen 207 DFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALSGCE 267 (453)
T ss_pred HHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHHhCCC
Confidence 5 7889999999998877631111 2555555578999999999999877 667666654
No 193
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.15 E-value=9.7e-10 Score=82.71 Aligned_cols=109 Identities=18% Similarity=0.190 Sum_probs=69.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCC--CeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEec
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGV--EPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNL 81 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
+..+|+|||||++|+.+|..|++.+. +|+|+++.+...-. ...+...+...
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~---------------r~~l~~~~~~~------------ 54 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYE---------------RPPLSKSMLLE------------ 54 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCC---------------CCCCCHHHHCC------------
Confidence 45689999999999999999999876 79999986542100 00000000000
Q ss_pred CCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecC
Q 030042 82 GTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCD 161 (184)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~ 161 (184)
.. .. .. .+... +++.+. +++++.++.|+.+...+ ..|.+.+|+.+.+|.||+||
T Consensus 55 -~~--~~-----------~~-~~~~~---~~~~~~--~i~~~~g~~V~~id~~~------~~v~~~~g~~~~yd~LViAT 108 (396)
T PRK09754 55 -DS--PQ-----------LQ-QVLPA---NWWQEN--NVHLHSGVTIKTLGRDT------RELVLTNGESWHWDQLFIAT 108 (396)
T ss_pred -CC--cc-----------cc-ccCCH---HHHHHC--CCEEEcCCEEEEEECCC------CEEEECCCCEEEcCEEEEcc
Confidence 00 00 00 00011 112222 78999999999998765 45667788889999999999
Q ss_pred Ccch
Q 030042 162 GIHS 165 (184)
Q Consensus 162 G~~s 165 (184)
|+..
T Consensus 109 Gs~~ 112 (396)
T PRK09754 109 GAAA 112 (396)
T ss_pred CCCC
Confidence 9875
No 194
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.15 E-value=1.1e-10 Score=65.35 Aligned_cols=36 Identities=50% Similarity=0.708 Sum_probs=32.0
Q ss_pred EECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccc
Q 030042 10 IIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGA 45 (184)
Q Consensus 10 IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~ 45 (184)
|||||++|+++|+.|++.|.+|+|+|+.+.+++..+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 36 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRAR 36 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGC
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCccee
Confidence 899999999999999999999999999998876643
No 195
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.15 E-value=5.1e-10 Score=82.23 Aligned_cols=154 Identities=18% Similarity=0.263 Sum_probs=72.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCC-CCeEEEeccCCCCCccceeeecccHH--HHHHHcCChHHHHhcCCCccceEEEec
Q 030042 5 EKDVVIIGAGIAGLATALALKRLG-VEPLVLEKSDGLRGTGAAISFAPNAW--LALDALGVSHKLASIYPPVNRISVTNL 81 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g-~~v~vie~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
.+|+++||.||++|++|..|...+ .+++.||+.+.+.... ++.+....+ ..++.+-- +..-..++..+.+...
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~-gmll~~~~~q~~fl~Dlvt---~~~P~s~~sflnYL~~ 77 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHP-GMLLPGARMQVSFLKDLVT---LRDPTSPFSFLNYLHE 77 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTG-GG--SS-B-SS-TTSSSST---TT-TTSTTSHHHHHHH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCC-ccCCCCCccccccccccCc---CcCCCCcccHHHHHHH
Confidence 589999999999999999998875 8999999987653321 111111000 01111000 0000011111111111
Q ss_pred CCCceeeeecCCCCCCCCCCeeeeHH---HHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEe----cCcEEEe
Q 030042 82 GTGATQETSLTGKFGDGSGPRFIHRK---KLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV----DGTIVKT 154 (184)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~----~g~~~~a 154 (184)
++. ...|... ....+.|. ++++|+.+++ ...+.++++|++|....+.+...+.|.+. +++++.|
T Consensus 78 ~~r---l~~f~~~-----~~~~p~R~ef~dYl~Wva~~~-~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~a 148 (341)
T PF13434_consen 78 HGR---LYEFYNR-----GYFFPSRREFNDYLRWVAEQL-DNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRA 148 (341)
T ss_dssp TT----HHHHHHH-------SS-BHHHHHHHHHHHHCCG-TTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEE
T ss_pred cCC---hhhhhhc-----CCCCCCHHHHHHHHHHHHHhC-CCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEe
Confidence 110 0011000 11133444 4555566665 34488999999999876321123888874 3468999
Q ss_pred eEEEecCCcchHHHhhh
Q 030042 155 KFLIGCDGIHSTVAWWL 171 (184)
Q Consensus 155 ~~vI~a~G~~s~~~~~~ 171 (184)
+.||+|+|....+.+.+
T Consensus 149 r~vVla~G~~P~iP~~~ 165 (341)
T PF13434_consen 149 RNVVLATGGQPRIPEWF 165 (341)
T ss_dssp SEEEE----EE---GGG
T ss_pred CeEEECcCCCCCCCcch
Confidence 99999999765555444
No 196
>PRK14727 putative mercuric reductase; Provisional
Probab=99.14 E-value=1e-09 Score=84.52 Aligned_cols=41 Identities=29% Similarity=0.458 Sum_probs=36.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG 44 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~ 44 (184)
..+|++|||+|++|+.+|..|++.|.+|+++|+.+..++..
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c 55 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCC 55 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEe
Confidence 46899999999999999999999999999999986666554
No 197
>PLN02676 polyamine oxidase
Probab=99.14 E-value=3.3e-09 Score=81.67 Aligned_cols=55 Identities=16% Similarity=0.326 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhCC--------CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcc
Q 030042 106 RKKLLQTLADELP--------NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIH 164 (184)
Q Consensus 106 ~~~l~~~l~~~~~--------~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~ 164 (184)
.+.+.+.|.+.+. +.+|+++++|++|...+ ++ +.|.+.+|+++.||.||+|....
T Consensus 223 ~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~---~g-V~V~~~~G~~~~a~~VIvtvPl~ 285 (487)
T PLN02676 223 YESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSK---NG-VTVKTEDGSVYRAKYVIVSVSLG 285 (487)
T ss_pred HHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcC---Cc-EEEEECCCCEEEeCEEEEccChH
Confidence 4567777777652 25799999999999875 55 89999999899999999999744
No 198
>PTZ00058 glutathione reductase; Provisional
Probab=99.13 E-value=1.1e-09 Score=85.28 Aligned_cols=39 Identities=33% Similarity=0.471 Sum_probs=34.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~ 43 (184)
.+||++|||||++|.++|..+++.|.+|+|||+. ..++.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGt 85 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGT 85 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccc
Confidence 4789999999999999999999999999999986 45544
No 199
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.13 E-value=6.7e-10 Score=78.89 Aligned_cols=39 Identities=33% Similarity=0.567 Sum_probs=33.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG 44 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~ 44 (184)
..|+|||+|.+||+++..+...|-.|+++|+....++.+
T Consensus 10 spvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNS 48 (477)
T KOG2404|consen 10 SPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNS 48 (477)
T ss_pred CcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcc
Confidence 479999999999999999988776799999988776543
No 200
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.12 E-value=2.8e-10 Score=93.23 Aligned_cols=39 Identities=28% Similarity=0.440 Sum_probs=34.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~ 43 (184)
..+|+||||||+||++|+.|++.|++|+|||+.+.+++.
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~ 344 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGV 344 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCce
Confidence 368999999999999999999999999999998765543
No 201
>PLN02546 glutathione reductase
Probab=99.12 E-value=2e-10 Score=89.42 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=31.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEec
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEK 36 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~ 36 (184)
.+||++|||+|++|+.+|..+++.|.+|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 358999999999999999999999999999996
No 202
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.11 E-value=1.1e-09 Score=90.66 Aligned_cols=38 Identities=39% Similarity=0.633 Sum_probs=34.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~ 42 (184)
.+||+||||||+|+++|+.|++.|.+|+|+|+.+..++
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG 200 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGG 200 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCC
Confidence 57999999999999999999999999999999877644
No 203
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.10 E-value=1.5e-09 Score=63.03 Aligned_cols=80 Identities=33% Similarity=0.398 Sum_probs=60.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCce
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGAT 86 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (184)
+++|||||+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~------------------------------------------- 37 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPG------------------------------------------- 37 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTT-------------------------------------------
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhh-------------------------------------------
Confidence 4899999999999999999999999999998764210
Q ss_pred eeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecC
Q 030042 87 QETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG 149 (184)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g 149 (184)
. + .-....+.+.+.+. |+++++++++.++..++ ++ +.|.++||
T Consensus 38 ----------~--~--~~~~~~~~~~l~~~--gV~v~~~~~v~~i~~~~---~~-~~V~~~~g 80 (80)
T PF00070_consen 38 ----------F--D--PDAAKILEEYLRKR--GVEVHTNTKVKEIEKDG---DG-VEVTLEDG 80 (80)
T ss_dssp ----------S--S--HHHHHHHHHHHHHT--TEEEEESEEEEEEEEET---TS-EEEEEETS
T ss_pred ----------c--C--HHHHHHHHHHHHHC--CCEEEeCCEEEEEEEeC---CE-EEEEEecC
Confidence 0 0 00123445555555 89999999999999887 44 55888776
No 204
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.09 E-value=4.1e-10 Score=83.99 Aligned_cols=149 Identities=17% Similarity=0.210 Sum_probs=78.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhC---CCCeEEEeccCCCCCccceeeecccHHHHHHHc---CChHHHHhcCCCccceEE
Q 030042 5 EKDVVIIGAGIAGLATALALKRL---GVEPLVLEKSDGLRGTGAAISFAPNAWLALDAL---GVSHKLASIYPPVNRISV 78 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 78 (184)
+++|+|||||++|+.+|.+|.+. ..+|.|+|+.+.. |.|+.|++..-..+-.. ...-...+. + ..+.-
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~---G~GiaYs~~~p~~~lNv~a~~mS~~~pD~--p-~~F~~ 74 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF---GQGIAYSTEEPEHLLNVPAARMSAFAPDI--P-QDFVR 74 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc---CCCccCCCCCchhhhccccccccccCCCC--c-hHHHH
Confidence 37999999999999999999875 2249999998876 45555554332111111 000000000 0 00000
Q ss_pred EecCC----CceeeeecCCCCCCCCCCeeeeHHHH-------HHHHHhhCCCCe-eeeCceEEEEeccCCCCCcceEEEE
Q 030042 79 TNLGT----GATQETSLTGKFGDGSGPRFIHRKKL-------LQTLADELPNGT-IHFSSKIAAIDSQTHDGSSPVFIHL 146 (184)
Q Consensus 79 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~l~~~~~~~~-i~~~~~v~~~~~~~~~~~~~~~v~~ 146 (184)
|.... .......+ + ...+..|..+ .+.|.+..+... .+..++.+++.+.+ ++.+ +.+.+
T Consensus 75 WL~~~~~~~~d~~~~~~-----d--~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~-n~~~-~~~~~ 145 (474)
T COG4529 75 WLQKQLQRYRDPEDINH-----D--GQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDT-NAGG-YLVTT 145 (474)
T ss_pred HHHhcccccCChhhcCC-----c--cccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceecc-CCce-EEEec
Confidence 00000 00000000 1 1112222222 233333333222 34466777777764 2344 88899
Q ss_pred ecCcEEEeeEEEecCCcchHHH
Q 030042 147 VDGTIVKTKFLIGCDGIHSTVA 168 (184)
Q Consensus 147 ~~g~~~~a~~vI~a~G~~s~~~ 168 (184)
.+|+...||.+|+|||+.....
T Consensus 146 ~~g~~~~ad~~Vlatgh~~~~~ 167 (474)
T COG4529 146 ADGPSEIADIIVLATGHSAPPA 167 (474)
T ss_pred CCCCeeeeeEEEEeccCCCCCc
Confidence 9999999999999999765433
No 205
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.08 E-value=6.9e-10 Score=84.74 Aligned_cols=34 Identities=41% Similarity=0.594 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCC--CCeEEEeccCCC
Q 030042 7 DVVIIGAGIAGLATALALKRLG--VEPLVLEKSDGL 40 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g--~~v~vie~~~~~ 40 (184)
+|+|||||++|+++|..|++.+ .+|+|||+.+..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence 6999999999999999999875 489999997653
No 206
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.08 E-value=2.8e-10 Score=85.58 Aligned_cols=45 Identities=29% Similarity=0.381 Sum_probs=37.7
Q ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC-Ccccee
Q 030042 3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR-GTGAAI 47 (184)
Q Consensus 3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~-~~~~~~ 47 (184)
..+|||+|||||.+|.-+|.-.+-+|+++.++|+++.-. .++++.
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSSkST 110 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSSKST 110 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCccccch
Confidence 356999999999999999999999999999999987543 334443
No 207
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.06 E-value=4.3e-10 Score=86.26 Aligned_cols=37 Identities=41% Similarity=0.633 Sum_probs=33.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~ 43 (184)
||++||||||+|+++|..|++.|.+|+|+|+.. .++.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~ 37 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGT 37 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCC
Confidence 799999999999999999999999999999865 4444
No 208
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.03 E-value=2e-08 Score=77.59 Aligned_cols=40 Identities=40% Similarity=0.470 Sum_probs=35.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhC----CCCeEEEeccCCCCCcc
Q 030042 5 EKDVVIIGAGIAGLATALALKRL----GVEPLVLEKSDGLRGTG 44 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~----g~~v~vie~~~~~~~~~ 44 (184)
+.+++|||||++||++|+.|++. |.+|+|+|+.+.+++.-
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~ 65 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSL 65 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCc
Confidence 46899999999999999999985 67999999999877653
No 209
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.03 E-value=9.5e-10 Score=84.96 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=31.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKS 37 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~ 37 (184)
+||++||||||+|+++|..|+++|.+|+|+|+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 689999999999999999999999999999973
No 210
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.03 E-value=4.4e-10 Score=86.53 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=43.4
Q ss_pred HHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCc
Q 030042 107 KKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGI 163 (184)
Q Consensus 107 ~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~ 163 (184)
..+.+.|.+.++ |++|+++++|++|...+ +.+ +++.+.+|+.+.+|.||.+...
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~--g~g-~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEG--GKG-VGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEEeC--Ccc-eEEeccccceeccceeEecCch
Confidence 345566666664 89999999999999887 355 8888888878899999988876
No 211
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=8.1e-10 Score=79.24 Aligned_cols=110 Identities=22% Similarity=0.391 Sum_probs=75.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEE-eccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVL-EKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT 83 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vi-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
.|||+||||||+|.++|.+.+|.|++.-++ ||. +++ . ++.+++.
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerf---GGQ----v--------ldT~~IE-------------------- 255 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERF---GGQ----V--------LDTMGIE-------------------- 255 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhhhhh---CCe----e--------ccccchh--------------------
Confidence 589999999999999999999999987665 442 111 0 0000000
Q ss_pred CceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecC
Q 030042 84 GATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCD 161 (184)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~ 161 (184)
.|.. ......++|...|.++.+ .+.+....+.+++.+....+.- ..|.+.+|...+++.||++|
T Consensus 256 ------NfIs-------v~~teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l-~ev~l~nGavLkaktvIlst 321 (520)
T COG3634 256 ------NFIS-------VPETEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGL-IEVELANGAVLKARTVILAT 321 (520)
T ss_pred ------heec-------cccccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCcc-EEEEecCCceeccceEEEec
Confidence 0000 001122566666666665 6777777788888886543344 89999999999999999999
Q ss_pred Cc
Q 030042 162 GI 163 (184)
Q Consensus 162 G~ 163 (184)
|+
T Consensus 322 GA 323 (520)
T COG3634 322 GA 323 (520)
T ss_pred Cc
Confidence 97
No 212
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.01 E-value=8e-09 Score=77.30 Aligned_cols=107 Identities=20% Similarity=0.355 Sum_probs=77.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||||++|+-+|..|++.|.+|+++++.+.+...
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~------------------------------------------ 179 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS------------------------------------------ 179 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch------------------------------------------
Confidence 47999999999999999999999999999986542100
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS 165 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s 165 (184)
. . +. .-...+.+.+.+. ++++++++++.++...+ .. +.+.+.+|+++.+|.||.|+|..+
T Consensus 180 -----~-----~-~~---~~~~~l~~~l~~~--gV~i~~~~~v~~i~~~~---~~-~~v~~~~g~~i~~D~vI~a~G~~p 239 (377)
T PRK04965 180 -----L-----M-PP---EVSSRLQHRLTEM--GVHLLLKSQLQGLEKTD---SG-IRATLDSGRSIEVDAVIAAAGLRP 239 (377)
T ss_pred -----h-----C-CH---HHHHHHHHHHHhC--CCEEEECCeEEEEEccC---CE-EEEEEcCCcEEECCEEEECcCCCc
Confidence 0 0 00 0012344444443 89999999999998754 34 678888898999999999999855
Q ss_pred --HHHhhhCCC
Q 030042 166 --TVAWWLGLS 174 (184)
Q Consensus 166 --~~~~~~~~~ 174 (184)
.+.+.+++.
T Consensus 240 ~~~l~~~~gl~ 250 (377)
T PRK04965 240 NTALARRAGLA 250 (377)
T ss_pred chHHHHHCCCC
Confidence 355555543
No 213
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.01 E-value=5.3e-10 Score=87.82 Aligned_cols=34 Identities=26% Similarity=0.547 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHH----hCCCCeEEEeccCCC
Q 030042 7 DVVIIGAGIAGLATALALK----RLGVEPLVLEKSDGL 40 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~----~~g~~v~vie~~~~~ 40 (184)
||+|||||.+|+++|+.++ +.|.+|+|+||....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 8999999999999999998 679999999997643
No 214
>PRK12831 putative oxidoreductase; Provisional
Probab=99.01 E-value=7.3e-10 Score=84.83 Aligned_cols=38 Identities=34% Similarity=0.521 Sum_probs=34.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~ 42 (184)
..||+||||||+|+++|+.|+++|++|+|+|+.+.+++
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG 177 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGG 177 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 46999999999999999999999999999998766543
No 215
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.00 E-value=2.5e-09 Score=87.38 Aligned_cols=38 Identities=45% Similarity=0.626 Sum_probs=34.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~ 42 (184)
..+|+||||||+|+++|+.|++.|++|+|+|+.+.+++
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG 576 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGG 576 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCc
Confidence 35899999999999999999999999999999876543
No 216
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.00 E-value=6.4e-09 Score=79.85 Aligned_cols=33 Identities=36% Similarity=0.636 Sum_probs=31.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
.|++|||+|++|+.+|..+++.|.+|+++|+..
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 389999999999999999999999999999864
No 217
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.00 E-value=7.9e-09 Score=78.77 Aligned_cols=111 Identities=15% Similarity=0.173 Sum_probs=66.8
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042 7 DVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG 84 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
+|+|||||++|+.+|..|++. +.+|+|||+.+...-...+ + +.+... .
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~-------l---------p~~~~~-------------~- 52 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCA-------L---------PYYIGE-------------V- 52 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCC-------c---------chhhcC-------------c-
Confidence 799999999999999999876 5689999997653211000 0 000000 0
Q ss_pred ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEec-Cc--EEEeeEEEecC
Q 030042 85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVD-GT--IVKTKFLIGCD 161 (184)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~-g~--~~~a~~vI~a~ 161 (184)
.... .....+.+. .+.+.. +++++.+++|+++...+ +. +.+...+ ++ .+.+|++|+||
T Consensus 53 -~~~~---------~~~~~~~~~----~~~~~~-~i~v~~~~~V~~Id~~~---~~-v~~~~~~~~~~~~~~yd~lviAt 113 (438)
T PRK13512 53 -VEDR---------KYALAYTPE----KFYDRK-QITVKTYHEVIAINDER---QT-VTVLNRKTNEQFEESYDKLILSP 113 (438)
T ss_pred -cCCH---------HHcccCCHH----HHHHhC-CCEEEeCCEEEEEECCC---CE-EEEEECCCCcEEeeecCEEEECC
Confidence 0000 000011111 222222 78899999999998775 33 5555433 22 46899999999
Q ss_pred CcchH
Q 030042 162 GIHST 166 (184)
Q Consensus 162 G~~s~ 166 (184)
|+...
T Consensus 114 Gs~~~ 118 (438)
T PRK13512 114 GASAN 118 (438)
T ss_pred CCCCC
Confidence 98653
No 218
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.99 E-value=3.7e-09 Score=79.11 Aligned_cols=104 Identities=14% Similarity=0.221 Sum_probs=65.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042 6 KDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT 83 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
.+++|||||++|+.+|..|++. ..+|+||++.+...-... .+ ...
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~--~l--------------~~~----------------- 49 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKP--DL--------------SHV----------------- 49 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcC--cC--------------cHH-----------------
Confidence 4999999999999999999875 458999998764211000 00 000
Q ss_pred CceeeeecCCCCCCCCCCeeeeHHHHH----HHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEe
Q 030042 84 GATQETSLTGKFGDGSGPRFIHRKKLL----QTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIG 159 (184)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~ 159 (184)
+.. .....++. +.+.+.. +++++.+++|+++...+ ..+.+ ++..+.+|.||+
T Consensus 50 -------~~~---------~~~~~~~~~~~~~~~~~~~-gv~~~~~~~V~~id~~~------~~v~~-~~~~~~yd~LVl 105 (377)
T PRK04965 50 -------FSQ---------GQRADDLTRQSAGEFAEQF-NLRLFPHTWVTDIDAEA------QVVKS-QGNQWQYDKLVL 105 (377)
T ss_pred -------HhC---------CCCHHHhhcCCHHHHHHhC-CCEEECCCEEEEEECCC------CEEEE-CCeEEeCCEEEE
Confidence 000 00011111 1122222 78999999999998764 33444 456899999999
Q ss_pred cCCcchH
Q 030042 160 CDGIHST 166 (184)
Q Consensus 160 a~G~~s~ 166 (184)
|||+...
T Consensus 106 ATG~~~~ 112 (377)
T PRK04965 106 ATGASAF 112 (377)
T ss_pred CCCCCCC
Confidence 9998653
No 219
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.99 E-value=4.9e-09 Score=77.64 Aligned_cols=58 Identities=16% Similarity=0.383 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH
Q 030042 106 RKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST 166 (184)
Q Consensus 106 ~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~ 166 (184)
-.++.+.+.+..+ |++++|+++|++++..+ +.. ..|.+.+|.++.++.||+|.|..++
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~--~~~-~~v~~~~g~~i~~~~vvlA~Grsg~ 231 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIED--NEV-LGVKLTKGEEIEADYVVLAPGRSGR 231 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEecC--Cce-EEEEccCCcEEecCEEEEccCcchH
Confidence 3456666666664 89999999999999876 233 7888999999999999999998764
No 220
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.99 E-value=5.3e-09 Score=78.13 Aligned_cols=111 Identities=19% Similarity=0.227 Sum_probs=65.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc--------ceeeecccHHHHHHHcCChH-HHHhcCCCccce
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG--------AAISFAPNAWLALDALGVSH-KLASIYPPVNRI 76 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 76 (184)
.||+|||||++|+.+|+.|+++|++|+|+|+.+...... +....+..+...+...|+|. ++..... .
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~em~~lgs----l 78 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKEEMRRLGS----L 78 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHHHHHHhcc----h
Confidence 599999999999999999999999999999876543211 11223333455566677775 3333221 1
Q ss_pred EEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEE
Q 030042 77 SVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAI 131 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~ 131 (184)
.+.... .... ........++..+.+.|.+.+. +++++ ..+|+++
T Consensus 79 ~~~aad-----~~~v-----PA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l 125 (436)
T PRK05335 79 IMEAAD-----AHRV-----PAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEI 125 (436)
T ss_pred heeccc-----ccCC-----CCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhcc
Confidence 111000 0000 1112346778877777777653 56665 4455544
No 221
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.98 E-value=1.1e-08 Score=81.07 Aligned_cols=41 Identities=34% Similarity=0.545 Sum_probs=35.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC-CCCCcc
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD-GLRGTG 44 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~-~~~~~~ 44 (184)
.+||++|||+|++|..+|..+++.|.+|+|||++. ..++..
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtC 156 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTC 156 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccce
Confidence 36899999999999999999999999999999752 455543
No 222
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.97 E-value=1.6e-08 Score=76.25 Aligned_cols=105 Identities=24% Similarity=0.272 Sum_probs=75.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||+|+.|+-+|..|++.|.+|+|+|+.+.+... .
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-------------------------~---------------- 183 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR-------------------------N---------------- 183 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh-------------------------h----------------
Confidence 47999999999999999999999999999986542100 0
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS 165 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s 165 (184)
..+ .....+.+.+.+. +++++++++++++... +. +.+.+.+|+++.+|.||.|+|...
T Consensus 184 -----------~~~----~~~~~l~~~l~~~--GV~i~~~~~V~~i~~~----~~-~~v~l~~g~~i~aD~Vv~a~G~~p 241 (396)
T PRK09754 184 -----------APP----PVQRYLLQRHQQA--GVRILLNNAIEHVVDG----EK-VELTLQSGETLQADVVIYGIGISA 241 (396)
T ss_pred -----------cCH----HHHHHHHHHHHHC--CCEEEeCCeeEEEEcC----CE-EEEEECCCCEEECCEEEECCCCCh
Confidence 000 0012233344333 8999999999998762 23 667788888999999999999865
Q ss_pred H--HHhhhCC
Q 030042 166 T--VAWWLGL 173 (184)
Q Consensus 166 ~--~~~~~~~ 173 (184)
. +.+.+++
T Consensus 242 n~~l~~~~gl 251 (396)
T PRK09754 242 NDQLAREANL 251 (396)
T ss_pred hhHHHHhcCC
Confidence 3 4444454
No 223
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.96 E-value=3.5e-09 Score=86.77 Aligned_cols=38 Identities=39% Similarity=0.552 Sum_probs=34.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~ 42 (184)
.++|+||||||+|+++|+.|++.|++|+|+|+.+.+++
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG 574 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGG 574 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCc
Confidence 36999999999999999999999999999999876543
No 224
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.96 E-value=2.6e-09 Score=86.91 Aligned_cols=108 Identities=17% Similarity=0.123 Sum_probs=69.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhC----CCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEe
Q 030042 5 EKDVVIIGAGIAGLATALALKRL----GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTN 80 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~----g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
..+|+|||+|++|+.+|..|.+. +.+|+||++.+.+.-. + ..+...+.
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~-------r--------~~L~~~~~------------- 54 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYD-------R--------VHLSSYFS------------- 54 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCccc-------C--------CcchHhHc-------------
Confidence 34899999999999999999754 4789999987654211 0 00000000
Q ss_pred cCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEec
Q 030042 81 LGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGC 160 (184)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a 160 (184)
......+ ... ...++.+. +++++.+++|+++.... ..|.+.+|+.+.+|.||+|
T Consensus 55 --~~~~~~l-------------~~~---~~~~~~~~--gI~~~~g~~V~~Id~~~------~~V~~~~G~~i~yD~LVIA 108 (847)
T PRK14989 55 --HHTAEEL-------------SLV---REGFYEKH--GIKVLVGERAITINRQE------KVIHSSAGRTVFYDKLIMA 108 (847)
T ss_pred --CCCHHHc-------------cCC---CHHHHHhC--CCEEEcCCEEEEEeCCC------cEEEECCCcEEECCEEEEC
Confidence 0000000 000 01222222 89999999999987764 5577788888999999999
Q ss_pred CCcchH
Q 030042 161 DGIHST 166 (184)
Q Consensus 161 ~G~~s~ 166 (184)
||+...
T Consensus 109 TGs~p~ 114 (847)
T PRK14989 109 TGSYPW 114 (847)
T ss_pred CCCCcC
Confidence 998654
No 225
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.96 E-value=5.2e-10 Score=84.44 Aligned_cols=141 Identities=24% Similarity=0.298 Sum_probs=80.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC----------CCCccceeeecccHHHHHHHcC-ChHHHHhcCCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG----------LRGTGAAISFAPNAWLALDALG-VSHKLASIYPP 72 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 72 (184)
..|||+|||||-+|+-+|...+|.|.+++++-.+.. .++.+.++.... ++.+| +.....+....
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrE-----IDALGG~Mg~~~D~~~I 77 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVRE-----IDALGGLMGKAADKAGI 77 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEe-----ehhccchHHHhhhhcCC
Confidence 469999999999999999999999999999976542 233333332211 11111 01111010000
Q ss_pred ccceEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEecC
Q 030042 73 VNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG 149 (184)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g 149 (184)
.+.+.+... +...+++ -.+.++..+.+++.+... +..++. ..|+++...+ ++.++.|.+.+|
T Consensus 78 --Q~r~LN~sK---------GPAVra~-RaQaDk~~Y~~~mk~~le~~~NL~l~q-~~v~dli~e~--~~~v~GV~t~~G 142 (621)
T COG0445 78 --QFRMLNSSK---------GPAVRAP-RAQADKWLYRRAMKNELENQPNLHLLQ-GEVEDLIVEE--GQRVVGVVTADG 142 (621)
T ss_pred --chhhccCCC---------cchhcch-hhhhhHHHHHHHHHHHHhcCCCceehH-hhhHHHhhcC--CCeEEEEEeCCC
Confidence 001111111 1111111 113444455555554443 566554 5777887755 342388999999
Q ss_pred cEEEeeEEEecCCcc
Q 030042 150 TIVKTKFLIGCDGIH 164 (184)
Q Consensus 150 ~~~~a~~vI~a~G~~ 164 (184)
..+.|+.||++||-+
T Consensus 143 ~~~~a~aVVlTTGTF 157 (621)
T COG0445 143 PEFHAKAVVLTTGTF 157 (621)
T ss_pred CeeecCEEEEeeccc
Confidence 999999999999975
No 226
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.96 E-value=3.5e-09 Score=81.19 Aligned_cols=32 Identities=28% Similarity=0.556 Sum_probs=30.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
+++||||||+|+++|..|++.|.+|+|+|+..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 79999999999999999999999999999864
No 227
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.95 E-value=3.8e-09 Score=76.68 Aligned_cols=41 Identities=37% Similarity=0.575 Sum_probs=37.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG 44 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~ 44 (184)
.++|++||||||.|..+|...+|.|++.+.+|++...++..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTc 78 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTC 78 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCcee
Confidence 35899999999999999999999999999999988887654
No 228
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.95 E-value=2.4e-08 Score=74.74 Aligned_cols=67 Identities=13% Similarity=0.198 Sum_probs=47.1
Q ss_pred HHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecC--cEEEeeEEEecCCcc-hH-HHhhh-CCCCCcc
Q 030042 109 LLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG--TIVKTKFLIGCDGIH-ST-VAWWL-GLSEPLN 178 (184)
Q Consensus 109 l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g--~~~~a~~vI~a~G~~-s~-~~~~~-~~~~~~~ 178 (184)
+.+.|.+.++ |++++.+++|+++...+ +.. ..|.+.++ .+++||.||+|+|+| |. +.+.+ .+.+|.+
T Consensus 265 L~~aL~~~~~~~Gg~il~g~~V~~i~~~~--~~v-~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif 338 (419)
T TIGR03378 265 LEEALKHRFEQLGGVMLPGDRVLRAEFEG--NRV-TRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIF 338 (419)
T ss_pred HHHHHHHHHHHCCCEEEECcEEEEEEeeC--CeE-EEEEecCCccceEECCEEEEccCCCcCHHHHhhcCceeeecc
Confidence 4455666554 78999999999988765 233 55666665 489999999999999 74 54444 4445554
No 229
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.94 E-value=6.5e-09 Score=80.07 Aligned_cols=33 Identities=30% Similarity=0.554 Sum_probs=31.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKS 37 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~ 37 (184)
+||++|||+|++|+.+|..+++.|.+|+++|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 589999999999999999999999999999974
No 230
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.94 E-value=3.9e-09 Score=85.57 Aligned_cols=106 Identities=13% Similarity=0.100 Sum_probs=67.9
Q ss_pred EEEECCCHHHHHHHHHHHhC---CCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042 8 VVIIGAGIAGLATALALKRL---GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG 84 (184)
Q Consensus 8 v~IiGgG~~Gl~~A~~l~~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
|+|||+|++|+.+|..|.+. +.+|+|||+.+.+.-. +.. + ..+.......
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~-------r~~--------L-~~~l~g~~~~----------- 53 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYN-------RIL--------L-SSVLQGEADL----------- 53 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcc-------ccc--------c-cHHHCCCCCH-----------
Confidence 58999999999999998764 4689999987654211 000 0 0000000000
Q ss_pred ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcc
Q 030042 85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIH 164 (184)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~ 164 (184)
..+ ... ..+++.+. +++++.+++|+++.... ..|.+.+|+++.+|.||+|||+.
T Consensus 54 --~~l-------------~~~---~~~~~~~~--gv~~~~g~~V~~Id~~~------k~V~~~~g~~~~yD~LVlATGs~ 107 (785)
T TIGR02374 54 --DDI-------------TLN---SKDWYEKH--GITLYTGETVIQIDTDQ------KQVITDAGRTLSYDKLILATGSY 107 (785)
T ss_pred --HHc-------------cCC---CHHHHHHC--CCEEEcCCeEEEEECCC------CEEEECCCcEeeCCEEEECCCCC
Confidence 000 000 11222222 89999999999998765 56778888889999999999986
Q ss_pred hH
Q 030042 165 ST 166 (184)
Q Consensus 165 s~ 166 (184)
..
T Consensus 108 p~ 109 (785)
T TIGR02374 108 PF 109 (785)
T ss_pred cC
Confidence 53
No 231
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.93 E-value=1.7e-08 Score=76.69 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=31.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
.+.+|+|||||.+|+.+|..|.+.+.+|+|||+.+.
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence 457999999999999999999877789999998764
No 232
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.93 E-value=9.2e-09 Score=77.09 Aligned_cols=62 Identities=13% Similarity=0.296 Sum_probs=53.4
Q ss_pred CeeeeHHHHHHHHHhhCC-CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH
Q 030042 101 PRFIHRKKLLQTLADELP-NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST 166 (184)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~-~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~ 166 (184)
..++++..+...|.+.+. |++++++++|++++..+ +. +.|.+.+|..++||.||+|+|.++.
T Consensus 129 ~g~idp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~---~~-~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 129 GGWLSPPQLCRALLAHAGIRLTLHFNTEITSLERDG---EG-WQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred CcccChHHHHHHHHhccCCCcEEEeCCEEEEEEEcC---Ce-EEEEeCCCCEEEcCEEEEcCCcccc
Confidence 357788999999999887 88999999999998754 44 8899989887999999999999874
No 233
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.93 E-value=2.3e-08 Score=75.14 Aligned_cols=35 Identities=31% Similarity=0.458 Sum_probs=32.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL 40 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~ 40 (184)
+||+|||||++|+.+|+.|+++|++|+|+|+.+..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 48999999999999999999999999999987654
No 234
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.92 E-value=2.8e-09 Score=82.02 Aligned_cols=34 Identities=29% Similarity=0.405 Sum_probs=31.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCCeEEEecc
Q 030042 4 VEKDVVIIGAGIAGLATALALKRL-GVEPLVLEKS 37 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~-g~~v~vie~~ 37 (184)
++||++|||||++|..+|..+++. |.+|+|||+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 579999999999999999999996 8999999984
No 235
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.91 E-value=3.9e-09 Score=78.60 Aligned_cols=101 Identities=12% Similarity=0.068 Sum_probs=64.6
Q ss_pred cEEEECCCHHHHHHHHHHHhC---CCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCC
Q 030042 7 DVVIIGAGIAGLATALALKRL---GVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGT 83 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
+|+|||||++|+.+|..|.++ +.+|+|||+.+...-. +. .+.+...
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~-------~~----------~~~~~~g-------------- 49 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYS-------GM----------LPGMIAG-------------- 49 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCccc-------ch----------hhHHHhe--------------
Confidence 489999999999999999643 5789999987542111 00 0000000
Q ss_pred CceeeeecCCCCCCCCCCeeeeHHHH----HHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEe
Q 030042 84 GATQETSLTGKFGDGSGPRFIHRKKL----LQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIG 159 (184)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~ 159 (184)
.....++ .+.+.+. +++++.+ +|+++...+ -+|.+.+|+++.+|+||+
T Consensus 50 -------------------~~~~~~~~~~~~~~~~~~--gv~~~~~-~v~~id~~~------~~V~~~~g~~~~yD~Lvi 101 (364)
T TIGR03169 50 -------------------HYSLDEIRIDLRRLARQA--GARFVIA-EATGIDPDR------RKVLLANRPPLSYDVLSL 101 (364)
T ss_pred -------------------eCCHHHhcccHHHHHHhc--CCEEEEE-EEEEEeccc------CEEEECCCCcccccEEEE
Confidence 0001111 1222222 7887664 898988765 457778888899999999
Q ss_pred cCCcchH
Q 030042 160 CDGIHST 166 (184)
Q Consensus 160 a~G~~s~ 166 (184)
|+|+...
T Consensus 102 AtG~~~~ 108 (364)
T TIGR03169 102 DVGSTTP 108 (364)
T ss_pred ccCCCCC
Confidence 9997653
No 236
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.90 E-value=3.8e-09 Score=85.48 Aligned_cols=37 Identities=35% Similarity=0.469 Sum_probs=33.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR 41 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~ 41 (184)
..+|+||||||+|+++|+.|++.|++|+|+|+.+.++
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~G 467 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIG 467 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 4699999999999999999999999999999976554
No 237
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.8e-08 Score=68.29 Aligned_cols=116 Identities=20% Similarity=0.269 Sum_probs=74.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG 84 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
+.+|+|||+||++-.+|+++++..++.+++|--..-+ .+.+-.| ...-
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~-i~pGGQL---------------------------tTTT---- 55 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANG-IAPGGQL---------------------------TTTT---- 55 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccC-cCCCcee---------------------------eeee----
Confidence 4589999999999999999999999999999643211 1000000 0000
Q ss_pred ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCC
Q 030042 85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDG 162 (184)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G 162 (184)
..-.|++. .--+.-.+|++.++++.. |.+++.+ .|.++.... . ++.+.++.+ .+.+|.||.|+|
T Consensus 56 --~veNfPGF------Pdgi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~ss---k-pF~l~td~~-~v~~~avI~atG 121 (322)
T KOG0404|consen 56 --DVENFPGF------PDGITGPELMDKMRKQSERFGTEIITE-TVSKVDLSS---K-PFKLWTDAR-PVTADAVILATG 121 (322)
T ss_pred --ccccCCCC------CcccccHHHHHHHHHHHHhhcceeeee-ehhhccccC---C-CeEEEecCC-ceeeeeEEEecc
Confidence 01112211 112344688888888875 5666554 666666654 3 377877554 689999999999
Q ss_pred cchH
Q 030042 163 IHST 166 (184)
Q Consensus 163 ~~s~ 166 (184)
+...
T Consensus 122 AsAk 125 (322)
T KOG0404|consen 122 ASAK 125 (322)
T ss_pred ccee
Confidence 8643
No 238
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.89 E-value=2.1e-08 Score=75.14 Aligned_cols=148 Identities=22% Similarity=0.253 Sum_probs=85.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc------ceeeecc---cHHHHHHHc-----------------
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG------AAISFAP---NAWLALDAL----------------- 60 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~------~~~~~~~---~~~~~~~~~----------------- 60 (184)
||+|||+|++||++|+.|++. .+|+|+-|.+...+.+ -+..+.+ ...+.-.-+
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 999999999999999999988 8999999987553211 1111211 011111110
Q ss_pred ---CChHHHHhcCCCccceE-----EEecCCCce-eeeecCCCCCCCCCCeeeeHHHHHHHHHhhC---CCCeeeeCceE
Q 030042 61 ---GVSHKLASIYPPVNRIS-----VTNLGTGAT-QETSLTGKFGDGSGPRFIHRKKLLQTLADEL---PNGTIHFSSKI 128 (184)
Q Consensus 61 ---~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~i~~~~~v 128 (184)
...+++...+.++++-. +........ ...+-.+ ..-..+...|.++. ++++++.++.+
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~----------~TG~~I~~~L~~~v~~~p~I~v~e~~~a 157 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAAD----------ATGKEIMTALLKKVRNRPNITVLEGAEA 157 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecC----------CccHHHHHHHHHHHhcCCCcEEEecchh
Confidence 11244444555544322 111111111 1111111 11245666676666 38999999999
Q ss_pred EEEeccCCCCCcceEEEE--ecC--cEEEeeEEEecCCcchHH
Q 030042 129 AAIDSQTHDGSSPVFIHL--VDG--TIVKTKFLIGCDGIHSTV 167 (184)
Q Consensus 129 ~~~~~~~~~~~~~~~v~~--~~g--~~~~a~~vI~a~G~~s~~ 167 (184)
.++..++ +.....+.+ .++ .++.++.||+|||+.+.+
T Consensus 158 ~~li~~~--~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~l 198 (518)
T COG0029 158 LDLIIED--GIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGL 198 (518)
T ss_pred hhhhhcC--CceEeEEEEecCCCeEEEEecCeEEEecCCCccc
Confidence 9988876 222113443 322 578899999999987654
No 239
>PRK07208 hypothetical protein; Provisional
Probab=98.89 E-value=3.2e-09 Score=81.87 Aligned_cols=40 Identities=45% Similarity=0.545 Sum_probs=37.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~ 43 (184)
++.||+|||||++||++|+.|++.|++|+|+|+.+..++.
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~ 42 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGI 42 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence 5789999999999999999999999999999999888764
No 240
>PRK07846 mycothione reductase; Reviewed
Probab=98.88 E-value=1.2e-08 Score=77.98 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=29.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~ 43 (184)
+||++||||||+|..+|.. +.|.+|+++|+. ..++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~-~~GGt 36 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKG-TFGGT 36 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCc
Confidence 4899999999999998865 469999999985 34443
No 241
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.88 E-value=3.3e-09 Score=81.33 Aligned_cols=41 Identities=44% Similarity=0.703 Sum_probs=37.5
Q ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042 3 MVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43 (184)
Q Consensus 3 ~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~ 43 (184)
+++.+|+|||||++||++|.+|.+.|++|+|+|.++..|+.
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR 53 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR 53 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence 45789999999999999999999999999999999988753
No 242
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.87 E-value=5e-08 Score=74.94 Aligned_cols=99 Identities=20% Similarity=0.301 Sum_probs=72.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||||++|+-+|..|++.|.+|+++|+.+.....
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 208 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG------------------------------------------ 208 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC------------------------------------------
Confidence 47999999999999999999999999999987532100
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecC--cEEEeeEEEecCCc
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG--TIVKTKFLIGCDGI 163 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g--~~~~a~~vI~a~G~ 163 (184)
.... ....+.+.+.+. +++++.+++|++++..+ +. +.+.+.+| +++.+|.||+|+|.
T Consensus 209 -----------~~~~----~~~~~~~~l~~~--gi~i~~~~~v~~i~~~~---~~-v~v~~~~g~~~~i~~D~vi~a~G~ 267 (461)
T TIGR01350 209 -----------EDAE----VSKVVAKALKKK--GVKILTNTKVTAVEKND---DQ-VVYENKGGETETLTGEKVLVAVGR 267 (461)
T ss_pred -----------CCHH----HHHHHHHHHHHc--CCEEEeCCEEEEEEEeC---CE-EEEEEeCCcEEEEEeCEEEEecCC
Confidence 0000 012334444443 89999999999998654 33 66766666 47999999999998
Q ss_pred chHH
Q 030042 164 HSTV 167 (184)
Q Consensus 164 ~s~~ 167 (184)
.+..
T Consensus 268 ~p~~ 271 (461)
T TIGR01350 268 KPNT 271 (461)
T ss_pred cccC
Confidence 7643
No 243
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.87 E-value=5.1e-08 Score=74.92 Aligned_cols=98 Identities=23% Similarity=0.372 Sum_probs=73.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||||+.|+-+|..|++.|.+|+++|+.+.+...
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 213 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF------------------------------------------ 213 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc------------------------------------------
Confidence 47999999999999999999999999999986542100
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS 165 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s 165 (184)
..+. ....+.+.+.+. +++++.+++++++...+ +. +.+.+.+|+++.+|.||.|+|..+
T Consensus 214 -----------~d~~----~~~~l~~~l~~~--gI~v~~~~~v~~i~~~~---~~-~~v~~~~g~~i~~D~vi~a~G~~p 272 (461)
T PRK05249 214 -----------LDDE----ISDALSYHLRDS--GVTIRHNEEVEKVEGGD---DG-VIVHLKSGKKIKADCLLYANGRTG 272 (461)
T ss_pred -----------CCHH----HHHHHHHHHHHc--CCEEEECCEEEEEEEeC---Ce-EEEEECCCCEEEeCEEEEeecCCc
Confidence 0000 012344444433 89999999999998654 33 667777788899999999999876
Q ss_pred H
Q 030042 166 T 166 (184)
Q Consensus 166 ~ 166 (184)
.
T Consensus 273 ~ 273 (461)
T PRK05249 273 N 273 (461)
T ss_pred c
Confidence 4
No 244
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.86 E-value=5e-08 Score=74.70 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=29.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~ 43 (184)
++||++|||+|++|..+|. +..|.+|+++|+. ..++.
T Consensus 1 ~~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~-~~GGt 37 (452)
T TIGR03452 1 RHYDLIIIGTGSGNSIPDP--RFADKRIAIVEKG-TFGGT 37 (452)
T ss_pred CCcCEEEECCCHHHHHHHH--HHCCCeEEEEeCC-CCCCe
Confidence 3699999999999998865 4579999999984 34444
No 245
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.86 E-value=5.9e-09 Score=86.29 Aligned_cols=37 Identities=38% Similarity=0.439 Sum_probs=33.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR 41 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~ 41 (184)
..+|+||||||+||++|+.|++.|++|+|||+.+.++
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~G 466 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVG 466 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCc
Confidence 4689999999999999999999999999999876654
No 246
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.84 E-value=6.6e-08 Score=74.31 Aligned_cols=98 Identities=21% Similarity=0.315 Sum_probs=71.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||||++|+-+|..|++.|.+|+++++.+.....
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 210 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG------------------------------------------ 210 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc------------------------------------------
Confidence 47999999999999999999999999999986542100
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecC---cEEEeeEEEecCC
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG---TIVKTKFLIGCDG 162 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g---~~~~a~~vI~a~G 162 (184)
..+. ....+.+.|.+. +++++.+++|++++..+ +. +.+.+.++ +++.+|.||.|+|
T Consensus 211 -----------~~~~----~~~~l~~~l~~~--gV~i~~~~~V~~i~~~~---~~-v~v~~~~gg~~~~i~~D~vi~a~G 269 (462)
T PRK06416 211 -----------EDKE----ISKLAERALKKR--GIKIKTGAKAKKVEQTD---DG-VTVTLEDGGKEETLEADYVLVAVG 269 (462)
T ss_pred -----------CCHH----HHHHHHHHHHHc--CCEEEeCCEEEEEEEeC---CE-EEEEEEeCCeeEEEEeCEEEEeeC
Confidence 0000 012333444443 89999999999998764 33 66666655 6799999999999
Q ss_pred cchH
Q 030042 163 IHST 166 (184)
Q Consensus 163 ~~s~ 166 (184)
..+.
T Consensus 270 ~~p~ 273 (462)
T PRK06416 270 RRPN 273 (462)
T ss_pred CccC
Confidence 8654
No 247
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.84 E-value=7.2e-09 Score=79.42 Aligned_cols=37 Identities=41% Similarity=0.554 Sum_probs=33.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR 41 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~ 41 (184)
..+|+|||||++|+.+|..|++.|.+|+|+|+.+..+
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~g 176 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAG 176 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCC
Confidence 4689999999999999999999999999999976543
No 248
>PRK07846 mycothione reductase; Reviewed
Probab=98.84 E-value=7.5e-08 Score=73.71 Aligned_cols=97 Identities=22% Similarity=0.325 Sum_probs=70.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||||+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~------------------------------------------ 204 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH------------------------------------------ 204 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc------------------------------------------
Confidence 48999999999999999999999999999986542100
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS 165 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s 165 (184)
.... ..+....+.+ .+++++.++++++++..+ .. +.+.+.+|+++.+|.||.|+|..+
T Consensus 205 -----------~d~~-----~~~~l~~l~~--~~v~i~~~~~v~~i~~~~---~~-v~v~~~~g~~i~~D~vl~a~G~~p 262 (451)
T PRK07846 205 -----------LDDD-----ISERFTELAS--KRWDVRLGRNVVGVSQDG---SG-VTLRLDDGSTVEADVLLVATGRVP 262 (451)
T ss_pred -----------cCHH-----HHHHHHHHHh--cCeEEEeCCEEEEEEEcC---CE-EEEEECCCcEeecCEEEEEECCcc
Confidence 0000 0111122222 278899999999998654 34 667777888899999999999866
Q ss_pred H
Q 030042 166 T 166 (184)
Q Consensus 166 ~ 166 (184)
.
T Consensus 263 n 263 (451)
T PRK07846 263 N 263 (451)
T ss_pred C
Confidence 4
No 249
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.83 E-value=9e-08 Score=72.71 Aligned_cols=98 Identities=24% Similarity=0.395 Sum_probs=73.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
..++|||||+.|+-+|..+++.|.+|+|+|+.+..-.. .+
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~--------------------------------------~D-- 213 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG--------------------------------------ED-- 213 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc--------------------------------------CC--
Confidence 36999999999999999999999999999998754111 00
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCc--EEEeeEEEecCCc
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGT--IVKTKFLIGCDGI 163 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~--~~~a~~vI~a~G~ 163 (184)
++. ...+.+.|.+ .+++++.+++++.++..+ +. +.+.+++|+ ++++|.|+.|+|.
T Consensus 214 -------------~ei----~~~~~~~l~~--~gv~i~~~~~v~~~~~~~---~~-v~v~~~~g~~~~~~ad~vLvAiGR 270 (454)
T COG1249 214 -------------PEI----SKELTKQLEK--GGVKILLNTKVTAVEKKD---DG-VLVTLEDGEGGTIEADAVLVAIGR 270 (454)
T ss_pred -------------HHH----HHHHHHHHHh--CCeEEEccceEEEEEecC---Ce-EEEEEecCCCCEEEeeEEEEccCC
Confidence 000 1234444444 378999999999998876 44 777777765 7889999999998
Q ss_pred chH
Q 030042 164 HST 166 (184)
Q Consensus 164 ~s~ 166 (184)
...
T Consensus 271 ~Pn 273 (454)
T COG1249 271 KPN 273 (454)
T ss_pred ccC
Confidence 654
No 250
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.82 E-value=1.1e-08 Score=74.86 Aligned_cols=152 Identities=17% Similarity=0.220 Sum_probs=87.4
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCC-CCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCC---ccce
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLG-VEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPP---VNRI 76 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g-~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 76 (184)
|.+..+|++.||-||+.|.+|..|..++ .+++.+||.+.+.... ++.+...+++.- ...++...-.| +..+
T Consensus 1 ~~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHp-GmllegstlQv~----FlkDLVTl~~PTs~ySFL 75 (436)
T COG3486 1 MMAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHP-GMLLEGSTLQVP----FLKDLVTLVDPTSPYSFL 75 (436)
T ss_pred CCCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCC-CcccCCcccccc----chhhhccccCCCCchHHH
Confidence 4557899999999999999999998875 6899999998764332 122222111110 01111111111 1122
Q ss_pred EEEecCCCceeeeecCCCCCCCCCCeeeeHHH---HHHHHHhhCCCCeeeeCceEEEEeccCCCCCc-ceEEEEecCcEE
Q 030042 77 SVTNLGTGATQETSLTGKFGDGSGPRFIHRKK---LLQTLADELPNGTIHFSSKIAAIDSQTHDGSS-PVFIHLVDGTIV 152 (184)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~-~~~v~~~~g~~~ 152 (184)
.+...++ .-..|.. .+...+.|.+ +++|....+ -.++|+++|++|...+. +.. ...+.+.++..+
T Consensus 76 NYL~~h~---RLy~Fl~-----~e~f~i~R~Ey~dY~~Waa~~l--~~~rfg~~V~~i~~~~~-d~~~~~~~~t~~~~~y 144 (436)
T COG3486 76 NYLHEHG---RLYEFLN-----YETFHIPRREYNDYCQWAASQL--PSLRFGEEVTDISSLDG-DAVVRLFVVTANGTVY 144 (436)
T ss_pred HHHHHcc---hHhhhhh-----hhcccccHHHHHHHHHHHHhhC--CccccCCeeccccccCC-cceeEEEEEcCCCcEE
Confidence 2222111 1111111 1333455555 445555554 46788999998744331 122 233778888899
Q ss_pred EeeEEEecCCcchHHH
Q 030042 153 KTKFLIGCDGIHSTVA 168 (184)
Q Consensus 153 ~a~~vI~a~G~~s~~~ 168 (184)
.|+.||+++|....+.
T Consensus 145 ~ar~lVlg~G~~P~IP 160 (436)
T COG3486 145 RARNLVLGVGTQPYIP 160 (436)
T ss_pred EeeeEEEccCCCcCCC
Confidence 9999999999876543
No 251
>PRK06116 glutathione reductase; Validated
Probab=98.79 E-value=1.1e-07 Score=72.80 Aligned_cols=99 Identities=22% Similarity=0.306 Sum_probs=73.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||||++|+-+|..|++.|.+|+++++.+.+...
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------ 205 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG------------------------------------------ 205 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc------------------------------------------
Confidence 47999999999999999999999999999986542100
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS 165 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s 165 (184)
..+. -...+.+.|.+. +++++.+++|.+++..++ .. +.+.+.+|+++.+|.||.|+|...
T Consensus 206 -----------~~~~----~~~~l~~~L~~~--GV~i~~~~~V~~i~~~~~--g~-~~v~~~~g~~i~~D~Vv~a~G~~p 265 (450)
T PRK06116 206 -----------FDPD----IRETLVEEMEKK--GIRLHTNAVPKAVEKNAD--GS-LTLTLEDGETLTVDCLIWAIGREP 265 (450)
T ss_pred -----------cCHH----HHHHHHHHHHHC--CcEEECCCEEEEEEEcCC--ce-EEEEEcCCcEEEeCEEEEeeCCCc
Confidence 0000 012344444443 899999999999987541 22 567777888899999999999865
Q ss_pred H
Q 030042 166 T 166 (184)
Q Consensus 166 ~ 166 (184)
.
T Consensus 266 ~ 266 (450)
T PRK06116 266 N 266 (450)
T ss_pred C
Confidence 4
No 252
>PLN02576 protoporphyrinogen oxidase
Probab=98.78 E-value=1.2e-08 Score=79.03 Aligned_cols=40 Identities=48% Similarity=0.718 Sum_probs=36.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCCeEEEeccCCCCCc
Q 030042 4 VEKDVVIIGAGIAGLATALALKRL-GVEPLVLEKSDGLRGT 43 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~-g~~v~vie~~~~~~~~ 43 (184)
.++||+|||||++||++|+.|++. |.+|+|+|+.+..++.
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr 51 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGN 51 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence 467999999999999999999999 9999999999988765
No 253
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.76 E-value=1.4e-07 Score=76.69 Aligned_cols=106 Identities=24% Similarity=0.384 Sum_probs=75.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||||+.|+-+|..|++.|.+|+|+|+.+.+... .
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~---------------~-------------------------- 179 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK---------------Q-------------------------- 179 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh---------------h--------------------------
Confidence 47999999999999999999999999999986432000 0
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS 165 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s 165 (184)
... .....+.+.+.+. |++++.++.++++...+ .. ..|.+.+|+++.+|.||.|+|...
T Consensus 180 -----------ld~----~~~~~l~~~l~~~--GV~v~~~~~v~~i~~~~---~~-~~v~~~dG~~i~~D~Vi~a~G~~P 238 (785)
T TIGR02374 180 -----------LDQ----TAGRLLQRELEQK--GLTFLLEKDTVEIVGAT---KA-DRIRFKDGSSLEADLIVMAAGIRP 238 (785)
T ss_pred -----------cCH----HHHHHHHHHHHHc--CCEEEeCCceEEEEcCC---ce-EEEEECCCCEEEcCEEEECCCCCc
Confidence 000 0012344444444 89999999999887543 33 567788999999999999999764
Q ss_pred --HHHhhhCC
Q 030042 166 --TVAWWLGL 173 (184)
Q Consensus 166 --~~~~~~~~ 173 (184)
.+.+.+++
T Consensus 239 n~~la~~~gl 248 (785)
T TIGR02374 239 NDELAVSAGI 248 (785)
T ss_pred CcHHHHhcCC
Confidence 34554544
No 254
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.76 E-value=2e-07 Score=71.23 Aligned_cols=97 Identities=16% Similarity=0.237 Sum_probs=69.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||||++|+-+|..|++.|.+|+++|+.+.+...
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 195 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR------------------------------------------ 195 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC------------------------------------------
Confidence 47999999999999999999999999999997542100
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS 165 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s 165 (184)
..+. -...+.+.+.+. +++++.+++|++++..+ .. +.+. .+++++.+|.||+|+|...
T Consensus 196 -----------~~~~----~~~~~~~~l~~~--GI~i~~~~~V~~i~~~~---~~-v~v~-~~g~~i~~D~viva~G~~p 253 (438)
T PRK07251 196 -----------EEPS----VAALAKQYMEED--GITFLLNAHTTEVKNDG---DQ-VLVV-TEDETYRFDALLYATGRKP 253 (438)
T ss_pred -----------CCHH----HHHHHHHHHHHc--CCEEEcCCEEEEEEecC---CE-EEEE-ECCeEEEcCEEEEeeCCCC
Confidence 0000 012233334433 89999999999998653 33 4444 3566899999999999865
Q ss_pred H
Q 030042 166 T 166 (184)
Q Consensus 166 ~ 166 (184)
.
T Consensus 254 ~ 254 (438)
T PRK07251 254 N 254 (438)
T ss_pred C
Confidence 4
No 255
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.75 E-value=3.6e-08 Score=73.13 Aligned_cols=37 Identities=49% Similarity=0.473 Sum_probs=33.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR 41 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~ 41 (184)
..+|+|||+|++|+.+|..|++.|.+|+++|+.+.++
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g 54 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPG 54 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence 3599999999999999999999999999999977653
No 256
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.75 E-value=1.9e-07 Score=71.42 Aligned_cols=98 Identities=16% Similarity=0.277 Sum_probs=71.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||+|++|+-+|..|++.|.+|+++++.+.+...
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~------------------------------------------ 204 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG------------------------------------------ 204 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc------------------------------------------
Confidence 46999999999999999999999999999986532000
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS 165 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s 165 (184)
+. .. -+..+.+.|.+. +++++.++++.++...+ +. +.+.+.+|+++.+|.||.|+|...
T Consensus 205 -----~d------~~----~~~~l~~~l~~~--gV~i~~~~~v~~i~~~~---~~-~~v~~~~g~~i~~D~viva~G~~p 263 (446)
T TIGR01424 205 -----FD------DD----MRALLARNMEGR--GIRIHPQTSLTSITKTD---DG-LKVTLSHGEEIVADVVLFATGRSP 263 (446)
T ss_pred -----cC------HH----HHHHHHHHHHHC--CCEEEeCCEEEEEEEcC---Ce-EEEEEcCCcEeecCEEEEeeCCCc
Confidence 00 00 012333444433 89999999999998654 33 667777888899999999999865
Q ss_pred H
Q 030042 166 T 166 (184)
Q Consensus 166 ~ 166 (184)
.
T Consensus 264 n 264 (446)
T TIGR01424 264 N 264 (446)
T ss_pred C
Confidence 4
No 257
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.75 E-value=2.3e-07 Score=71.15 Aligned_cols=97 Identities=20% Similarity=0.344 Sum_probs=69.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||||+.|+-+|..|++.|.+|+++++.+.+... + +
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-----~---------------------------------d-- 209 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-----L---------------------------------D-- 209 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-----c---------------------------------C--
Confidence 47999999999999999999999999999986432000 0 0
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS 165 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s 165 (184)
... ...+.+ +.+ .+++++.+++|++++..+ .. +.+.+.+|+++.+|.|+.|+|...
T Consensus 210 -------------~~~----~~~l~~-~~~--~gI~i~~~~~V~~i~~~~---~~-v~v~~~~g~~i~~D~vl~a~G~~p 265 (452)
T TIGR03452 210 -------------EDI----SDRFTE-IAK--KKWDIRLGRNVTAVEQDG---DG-VTLTLDDGSTVTADVLLVATGRVP 265 (452)
T ss_pred -------------HHH----HHHHHH-HHh--cCCEEEeCCEEEEEEEcC---Ce-EEEEEcCCCEEEcCEEEEeeccCc
Confidence 000 112222 222 278899999999998654 33 667777788899999999999765
Q ss_pred H
Q 030042 166 T 166 (184)
Q Consensus 166 ~ 166 (184)
.
T Consensus 266 n 266 (452)
T TIGR03452 266 N 266 (452)
T ss_pred C
Confidence 3
No 258
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.74 E-value=9.9e-08 Score=71.04 Aligned_cols=106 Identities=23% Similarity=0.261 Sum_probs=68.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCC--CCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEec
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLG--VEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNL 81 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g--~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
.+..++|||||.+|+.+|..|.+.. .+|+++|+.+..... +.+.+.-
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~--------------------plL~eva----------- 50 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFT--------------------PLLYEVA----------- 50 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccc--------------------hhhhhhh-----------
Confidence 3568999999999999999999875 889999998753211 0000000
Q ss_pred CCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEE
Q 030042 82 GTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLI 158 (184)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI 158 (184)
...++..++.--+.+.+. ++++.. .+|++|+.++ -.|.+++++.+.+|++|
T Consensus 51 -------------------~g~l~~~~i~~p~~~~~~~~~~v~~~~-~~V~~ID~~~------k~V~~~~~~~i~YD~LV 104 (405)
T COG1252 51 -------------------TGTLSESEIAIPLRALLRKSGNVQFVQ-GEVTDIDRDA------KKVTLADLGEISYDYLV 104 (405)
T ss_pred -------------------cCCCChhheeccHHHHhcccCceEEEE-EEEEEEcccC------CEEEeCCCccccccEEE
Confidence 001111121111222221 355544 5899999886 55777777789999999
Q ss_pred ecCCcchH
Q 030042 159 GCDGIHST 166 (184)
Q Consensus 159 ~a~G~~s~ 166 (184)
+|.|+...
T Consensus 105 valGs~~~ 112 (405)
T COG1252 105 VALGSETN 112 (405)
T ss_pred EecCCcCC
Confidence 99998653
No 259
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.74 E-value=1.5e-07 Score=71.62 Aligned_cols=96 Identities=20% Similarity=0.358 Sum_probs=68.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||||++|+-+|..|++.|.+|+++++.+..... .
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~---------------------------------------~-- 176 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK---------------------------------------L-- 176 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc---------------------------------------c--
Confidence 47999999999999999999999999999986532000 0
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS 165 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s 165 (184)
.... -...+.+.+.+. |+++++++++.++..++ . + +.+.+|+++.+|.||.|+|...
T Consensus 177 -----------~~~~----~~~~~~~~l~~~--gV~v~~~~~v~~i~~~~---~--~-v~~~~g~~i~~D~vi~a~G~~p 233 (427)
T TIGR03385 177 -----------FDEE----MNQIVEEELKKH--EINLRLNEEVDSIEGEE---R--V-KVFTSGGVYQADMVILATGIKP 233 (427)
T ss_pred -----------cCHH----HHHHHHHHHHHc--CCEEEeCCEEEEEecCC---C--E-EEEcCCCEEEeCEEEECCCccC
Confidence 0000 012233344333 89999999999997643 1 3 4556788899999999999864
No 260
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.74 E-value=9.7e-08 Score=68.77 Aligned_cols=39 Identities=31% Similarity=0.572 Sum_probs=34.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcc
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTG 44 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~ 44 (184)
.-+|+|||+|++||++|+.|+++- +|+++|.+...++..
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~rh-dVTLfEA~~rlGGha 46 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRRH-DVTLFEADRRLGGHA 46 (447)
T ss_pred CcceEEEcccchhhhhHHhhhccc-ceEEEeccccccCcc
Confidence 468999999999999999998764 999999998876644
No 261
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.74 E-value=2.8e-08 Score=76.17 Aligned_cols=59 Identities=41% Similarity=0.527 Sum_probs=46.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcccee----------------eecccHHHHHHHcCChHH
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAI----------------SFAPNAWLALDALGVSHK 65 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~ 65 (184)
+|+|||||++||++|+.|++.|.+|+|+|+.+.+++..++. ...+...++++++|+.+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~ 75 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDR 75 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccc
Confidence 58999999999999999999999999999998877643221 123567888888887543
No 262
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=3.1e-08 Score=74.02 Aligned_cols=144 Identities=28% Similarity=0.311 Sum_probs=85.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC----------CCCCccceeeecccHHHHHHHcCChHHHHhcCCCc
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD----------GLRGTGAAISFAPNAWLALDALGVSHKLASIYPPV 73 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (184)
..|||+|||||-+|.-+|...+|.|.+.+++-++- .+++.|.|+.+.. ...|. |+...+-+..
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrE--VDALd--Gl~~rvcD~s--- 99 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMRE--VDALD--GLCSRVCDQS--- 99 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeee--ehhhc--chHhhhhhhh---
Confidence 46899999999999999999999999999987653 3345555544322 00110 1111111111
Q ss_pred cceEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC---CCeeeeCceEEEEeccCCC-C-CcceEEEEec
Q 030042 74 NRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELP---NGTIHFSSKIAAIDSQTHD-G-SSPVFIHLVD 148 (184)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~i~~~~~v~~~~~~~~~-~-~~~~~v~~~~ 148 (184)
.+.+.- ..+-.+...||+- .++++..+.+.+.+... +..|+.+ .|.++...+.+ + ..+..|.+.|
T Consensus 100 -~vq~k~-------LNrs~GPAVwg~R-AQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~d 169 (679)
T KOG2311|consen 100 -GVQYKV-------LNRSKGPAVWGLR-AQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLVD 169 (679)
T ss_pred -hhhHHH-------hhccCCCcccChH-HhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEec
Confidence 111000 0001122234442 25677777777776653 5556544 66676654321 1 1146678899
Q ss_pred CcEEEeeEEEecCCcc
Q 030042 149 GTIVKTKFLIGCDGIH 164 (184)
Q Consensus 149 g~~~~a~~vI~a~G~~ 164 (184)
|..+.|+-||+.||-+
T Consensus 170 gt~v~a~~VilTTGTF 185 (679)
T KOG2311|consen 170 GTVVYAESVILTTGTF 185 (679)
T ss_pred CcEeccceEEEeeccc
Confidence 9999999999999965
No 263
>PLN02507 glutathione reductase
Probab=98.74 E-value=2.2e-07 Score=72.00 Aligned_cols=98 Identities=11% Similarity=0.165 Sum_probs=72.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||||+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~------------------------------------------ 241 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG------------------------------------------ 241 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc------------------------------------------
Confidence 47999999999999999999999999999986532100
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS 165 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s 165 (184)
+. .. -...+.+.|.+. +++++.+++|.+++..+ +. +.+.+.+|+++.+|.|+.|+|...
T Consensus 242 -----~d------~~----~~~~l~~~l~~~--GI~i~~~~~V~~i~~~~---~~-~~v~~~~g~~i~~D~vl~a~G~~p 300 (499)
T PLN02507 242 -----FD------DE----MRAVVARNLEGR--GINLHPRTNLTQLTKTE---GG-IKVITDHGEEFVADVVLFATGRAP 300 (499)
T ss_pred -----cC------HH----HHHHHHHHHHhC--CCEEEeCCEEEEEEEeC---Ce-EEEEECCCcEEEcCEEEEeecCCC
Confidence 00 00 012344444443 89999999999998654 33 667777888899999999999765
Q ss_pred H
Q 030042 166 T 166 (184)
Q Consensus 166 ~ 166 (184)
.
T Consensus 301 n 301 (499)
T PLN02507 301 N 301 (499)
T ss_pred C
Confidence 4
No 264
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.74 E-value=1.8e-08 Score=77.98 Aligned_cols=38 Identities=42% Similarity=0.592 Sum_probs=35.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~ 43 (184)
.||+|||||++||++|..|++.|++|+|+|+++.+++.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~ 39 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGC 39 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCc
Confidence 58999999999999999999999999999999888653
No 265
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.73 E-value=3e-07 Score=70.94 Aligned_cols=101 Identities=22% Similarity=0.329 Sum_probs=69.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||||++|+-+|..|++.|.+|+++|+.+.+...
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~------------------------------------------ 218 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT------------------------------------------ 218 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc------------------------------------------
Confidence 47999999999999999999999999999987542100
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecC--cEEEeeEEEecCCc
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG--TIVKTKFLIGCDGI 163 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g--~~~~a~~vI~a~G~ 163 (184)
. .. --...+.+.|.+. +++++.+++|+++....+ +.. ..+.+.+| +++.+|.||.|+|.
T Consensus 219 -----------~--~~--~~~~~l~~~l~~~--gI~i~~~~~v~~i~~~~~-~~~-~~~~~~~g~~~~i~~D~vi~a~G~ 279 (472)
T PRK05976 219 -----------E--DA--ELSKEVARLLKKL--GVRVVTGAKVLGLTLKKD-GGV-LIVAEHNGEEKTLEADKVLVSVGR 279 (472)
T ss_pred -----------C--CH--HHHHHHHHHHHhc--CCEEEeCcEEEEEEEecC-CCE-EEEEEeCCceEEEEeCEEEEeeCC
Confidence 0 00 0012333444433 899999999999975211 122 33445566 36899999999998
Q ss_pred chHH
Q 030042 164 HSTV 167 (184)
Q Consensus 164 ~s~~ 167 (184)
....
T Consensus 280 ~p~~ 283 (472)
T PRK05976 280 RPNT 283 (472)
T ss_pred ccCC
Confidence 6543
No 266
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.72 E-value=2.7e-07 Score=70.72 Aligned_cols=99 Identities=24% Similarity=0.334 Sum_probs=72.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
-+++|||||.+|+-+|..|++.|.+|+++++.+.+...
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~------------------------------------------ 204 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS------------------------------------------ 204 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc------------------------------------------
Confidence 47999999999999999999999999999987543100
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecC-cEEEeeEEEecCCcc
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG-TIVKTKFLIGCDGIH 164 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g-~~~~a~~vI~a~G~~ 164 (184)
+ +. --...+.+.|.+. +++++.+++++++..++ +.. ..+.+.+| +.+.+|.||.|+|..
T Consensus 205 -----~--------d~--~~~~~~~~~l~~~--gI~i~~~~~v~~i~~~~--~~~-~~v~~~~g~~~i~~D~vi~a~G~~ 264 (450)
T TIGR01421 205 -----F--------DS--MISETITEEYEKE--GINVHKLSKPVKVEKTV--EGK-LVIHFEDGKSIDDVDELIWAIGRK 264 (450)
T ss_pred -----c--------CH--HHHHHHHHHHHHc--CCEEEcCCEEEEEEEeC--Cce-EEEEECCCcEEEEcCEEEEeeCCC
Confidence 0 00 0013344444443 89999999999998653 122 55666677 579999999999986
Q ss_pred hH
Q 030042 165 ST 166 (184)
Q Consensus 165 s~ 166 (184)
..
T Consensus 265 pn 266 (450)
T TIGR01421 265 PN 266 (450)
T ss_pred cC
Confidence 64
No 267
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.72 E-value=1.8e-07 Score=69.92 Aligned_cols=38 Identities=53% Similarity=0.764 Sum_probs=33.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCCCCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSDGLRG 42 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~~~~ 42 (184)
...|+|||+|++|+++|..|.+.|. +++|+|..++.|+
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence 4689999999999999999997765 8999999887754
No 268
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.72 E-value=3e-07 Score=70.78 Aligned_cols=98 Identities=24% Similarity=0.346 Sum_probs=69.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||||+.|+-+|..|++.|.+|+++|+.+.....
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~------------------------------------------ 210 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN------------------------------------------ 210 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc------------------------------------------
Confidence 47999999999999999999999999999986532100
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEe--cC--cEEEeeEEEecC
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV--DG--TIVKTKFLIGCD 161 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~--~g--~~~~a~~vI~a~ 161 (184)
.... -...+.+.|.+. +++++.+++|+++...+ .. +.+.+. +| +++.+|.||.|+
T Consensus 211 -----------~d~~----~~~~l~~~l~~~--gV~i~~~~~v~~i~~~~---~~-~~v~~~~~~g~~~~i~~D~vi~a~ 269 (466)
T PRK07818 211 -----------EDAE----VSKEIAKQYKKL--GVKILTGTKVESIDDNG---SK-VTVTVSKKDGKAQELEADKVLQAI 269 (466)
T ss_pred -----------cCHH----HHHHHHHHHHHC--CCEEEECCEEEEEEEeC---Ce-EEEEEEecCCCeEEEEeCEEEECc
Confidence 0000 012344444443 89999999999998653 33 444443 56 479999999999
Q ss_pred CcchH
Q 030042 162 GIHST 166 (184)
Q Consensus 162 G~~s~ 166 (184)
|....
T Consensus 270 G~~pn 274 (466)
T PRK07818 270 GFAPR 274 (466)
T ss_pred CcccC
Confidence 97654
No 269
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.72 E-value=2.6e-07 Score=71.10 Aligned_cols=98 Identities=19% Similarity=0.298 Sum_probs=72.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||+|..|+-+|..|++.|.+|+++++.+.....
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 215 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG------------------------------------------ 215 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC------------------------------------------
Confidence 37999999999999999999999999999986542110
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS 165 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s 165 (184)
. . .-....+.+.|.+. +++++.++++++++..+ +. +.+.+.+|+++.+|.|+.|+|...
T Consensus 216 -----------~--d--~~~~~~l~~~L~~~--gV~i~~~~~v~~v~~~~---~~-~~v~~~~g~~l~~D~vl~a~G~~p 274 (466)
T PRK07845 216 -----------E--D--ADAAEVLEEVFARR--GMTVLKRSRAESVERTG---DG-VVVTLTDGRTVEGSHALMAVGSVP 274 (466)
T ss_pred -----------C--C--HHHHHHHHHHHHHC--CcEEEcCCEEEEEEEeC---CE-EEEEECCCcEEEecEEEEeecCCc
Confidence 0 0 00012344444444 89999999999997654 33 667777888899999999999865
Q ss_pred H
Q 030042 166 T 166 (184)
Q Consensus 166 ~ 166 (184)
.
T Consensus 275 n 275 (466)
T PRK07845 275 N 275 (466)
T ss_pred C
Confidence 4
No 270
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.72 E-value=3.1e-07 Score=70.70 Aligned_cols=98 Identities=23% Similarity=0.332 Sum_probs=69.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||+|++|+-+|..|++.|.+|+++++.+.+...
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 204 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR------------------------------------------ 204 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc------------------------------------------
Confidence 47999999999999999999999999999986542100
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEe---cCcEEEeeEEEecCC
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV---DGTIVKTKFLIGCDG 162 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~g~~~~a~~vI~a~G 162 (184)
..+. ....+.+.+.+. +++++.+++|++++.++ +. +.+.+. +++++.+|.||+|+|
T Consensus 205 -----------~d~~----~~~~l~~~l~~~--gV~i~~~~~V~~i~~~~---~~-~~v~~~~~~~~~~i~~D~ViiA~G 263 (463)
T TIGR02053 205 -----------EEPE----ISAAVEEALAEE--GIEVVTSAQVKAVSVRG---GG-KIITVEKPGGQGEVEADELLVATG 263 (463)
T ss_pred -----------cCHH----HHHHHHHHHHHc--CCEEEcCcEEEEEEEcC---CE-EEEEEEeCCCceEEEeCEEEEeEC
Confidence 0000 012334444433 89999999999998754 33 444443 236899999999999
Q ss_pred cchH
Q 030042 163 IHST 166 (184)
Q Consensus 163 ~~s~ 166 (184)
..+.
T Consensus 264 ~~p~ 267 (463)
T TIGR02053 264 RRPN 267 (463)
T ss_pred CCcC
Confidence 7654
No 271
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.71 E-value=2.2e-08 Score=74.41 Aligned_cols=37 Identities=38% Similarity=0.615 Sum_probs=33.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~ 42 (184)
+|++|||||++|+++|+.|++.|.+|+|+|+++..++
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 6999999999999999999999999999999775554
No 272
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.71 E-value=1.3e-07 Score=66.53 Aligned_cols=155 Identities=17% Similarity=0.226 Sum_probs=84.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCC------CCeEEEeccCCCCC-ccceeee-------------cccHHHHHHHcCChHH
Q 030042 6 KDVVIIGAGIAGLATALALKRLG------VEPLVLEKSDGLRG-TGAAISF-------------APNAWLALDALGVSHK 65 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g------~~v~vie~~~~~~~-~~~~~~~-------------~~~~~~~~~~~~~~~~ 65 (184)
.+|+|||||+.|.++||+|++++ ..|++||...-.++ +|.+.++ .+-+.++.+++ .++
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~L--sde 88 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEEL--SDE 88 (380)
T ss_pred eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHH--HHh
Confidence 68999999999999999999987 68999998765433 2222221 11112222221 222
Q ss_pred HHhc---C-CCccceEEE-ecCCCce----eeeecCCC------CCCCC--CCeeeeHHHHHHHHHhhCC---CCeeeeC
Q 030042 66 LASI---Y-PPVNRISVT-NLGTGAT----QETSLTGK------FGDGS--GPRFIHRKKLLQTLADELP---NGTIHFS 125 (184)
Q Consensus 66 ~~~~---~-~~~~~~~~~-~~~~~~~----~~~~~~~~------~~~~~--~~~~~~~~~l~~~l~~~~~---~~~i~~~ 125 (184)
+... . .....+... .+.+..+ ..++|... ...|. ...++++..+...+.+.+. ++++.++
T Consensus 89 ydGvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~G 168 (380)
T KOG2852|consen 89 YDGVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVFG 168 (380)
T ss_pred hcCcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEEEe
Confidence 2111 0 001111110 0011111 11111111 01222 4568899999999888874 5888887
Q ss_pred ceEEEEeccCCCCCcceEEEEe---c-CcEEEeeEEEecCCcchH
Q 030042 126 SKIAAIDSQTHDGSSPVFIHLV---D-GTIVKTKFLIGCDGIHST 166 (184)
Q Consensus 126 ~~v~~~~~~~~~~~~~~~v~~~---~-g~~~~a~~vI~a~G~~s~ 166 (184)
+|.++.... .+. ..+..+ + ......+.+|++.|.|+.
T Consensus 169 -kv~ev~dEk--~r~-n~v~~ae~~~ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 169 -KVKEVSDEK--HRI-NSVPKAEAEDTIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred -eeEEeeccc--ccc-cccchhhhcCceEEeeeeEEEEecCCCch
Confidence 666775221 121 112111 2 356779999999999873
No 273
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.70 E-value=3.9e-07 Score=69.99 Aligned_cols=99 Identities=18% Similarity=0.298 Sum_probs=69.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||||++|+-+|..|++.|.+|+++++.+.+...
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~------------------------------------------ 208 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG------------------------------------------ 208 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc------------------------------------------
Confidence 47999999999999999999999999999986542100
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecC-cEEEeeEEEecCCcc
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG-TIVKTKFLIGCDGIH 164 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g-~~~~a~~vI~a~G~~ 164 (184)
..+. -...+.+.|.+. +++++.++++++++..+ .. +.+...+. +++.+|.||.|+|..
T Consensus 209 -----------~d~e----~~~~l~~~L~~~--GI~i~~~~~V~~i~~~~---~~-v~~~~~g~~~~i~~D~vivA~G~~ 267 (458)
T PRK06912 209 -----------EDED----IAHILREKLEND--GVKIFTGAALKGLNSYK---KQ-ALFEYEGSIQEVNAEFVLVSVGRK 267 (458)
T ss_pred -----------ccHH----HHHHHHHHHHHC--CCEEEECCEEEEEEEcC---CE-EEEEECCceEEEEeCEEEEecCCc
Confidence 0000 012344444443 89999999999997654 22 44443222 368999999999987
Q ss_pred hHH
Q 030042 165 STV 167 (184)
Q Consensus 165 s~~ 167 (184)
+.+
T Consensus 268 p~~ 270 (458)
T PRK06912 268 PRV 270 (458)
T ss_pred cCC
Confidence 653
No 274
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.70 E-value=7.2e-07 Score=64.29 Aligned_cols=39 Identities=33% Similarity=0.575 Sum_probs=34.9
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
|.+..+||+|||+|.+||.+|.+|+..|.+|+|+|+...
T Consensus 1 ~d~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEge 39 (552)
T COG3573 1 SDGLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE 39 (552)
T ss_pred CCcccccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence 345689999999999999999999999999999998654
No 275
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.69 E-value=1.9e-08 Score=76.32 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=40.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcccee
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAI 47 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~ 47 (184)
++|||+|||+|.+|+.+|..|++.|.+|+++|+++..|+..++.
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~ 46 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASL 46 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccc
Confidence 57999999999999999999999999999999999888766544
No 276
>PRK06370 mercuric reductase; Validated
Probab=98.69 E-value=4.7e-07 Score=69.67 Aligned_cols=98 Identities=18% Similarity=0.301 Sum_probs=68.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||||+.|+-+|..|++.|.+|+++++.+.....
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~------------------------------------------ 209 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR------------------------------------------ 209 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc------------------------------------------
Confidence 47999999999999999999999999999986542100
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEE--e-cCcEEEeeEEEecCC
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHL--V-DGTIVKTKFLIGCDG 162 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~--~-~g~~~~a~~vI~a~G 162 (184)
.... ....+.+.|.+. +++++++++|.+++..+ +. ..+.. . ++.++.+|.||.|+|
T Consensus 210 -----------~~~~----~~~~l~~~l~~~--GV~i~~~~~V~~i~~~~---~~-~~v~~~~~~~~~~i~~D~Vi~A~G 268 (463)
T PRK06370 210 -----------EDED----VAAAVREILERE--GIDVRLNAECIRVERDG---DG-IAVGLDCNGGAPEITGSHILVAVG 268 (463)
T ss_pred -----------cCHH----HHHHHHHHHHhC--CCEEEeCCEEEEEEEcC---CE-EEEEEEeCCCceEEEeCEEEECcC
Confidence 0000 012333444333 89999999999998764 22 33333 2 345799999999999
Q ss_pred cchH
Q 030042 163 IHST 166 (184)
Q Consensus 163 ~~s~ 166 (184)
....
T Consensus 269 ~~pn 272 (463)
T PRK06370 269 RVPN 272 (463)
T ss_pred CCcC
Confidence 7654
No 277
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.67 E-value=3.4e-07 Score=74.85 Aligned_cols=109 Identities=26% Similarity=0.335 Sum_probs=76.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
..++|||||+.|+-+|..|++.|.+|+|+|+.+..... .
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~---------------------~-------------------- 184 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAE---------------------Q-------------------- 184 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhh---------------------h--------------------
Confidence 36999999999999999999999999999986532000 0
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS 165 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s 165 (184)
.... ....+.+.|.+. |++++.++.++++...++ ... ..+.+.+|+.+.+|.||.|+|...
T Consensus 185 -----------ld~~----~~~~l~~~L~~~--GV~v~~~~~v~~I~~~~~-~~~-~~v~~~dG~~i~~D~Vv~A~G~rP 245 (847)
T PRK14989 185 -----------LDQM----GGEQLRRKIESM--GVRVHTSKNTLEIVQEGV-EAR-KTMRFADGSELEVDFIVFSTGIRP 245 (847)
T ss_pred -----------cCHH----HHHHHHHHHHHC--CCEEEcCCeEEEEEecCC-Cce-EEEEECCCCEEEcCEEEECCCccc
Confidence 0000 012344445444 899999999999976431 122 567788999999999999999755
Q ss_pred H--HHhhhCCC
Q 030042 166 T--VAWWLGLS 174 (184)
Q Consensus 166 ~--~~~~~~~~ 174 (184)
. +.+..++.
T Consensus 246 n~~L~~~~Gl~ 256 (847)
T PRK14989 246 QDKLATQCGLA 256 (847)
T ss_pred CchHHhhcCcc
Confidence 3 45555543
No 278
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.67 E-value=5.2e-07 Score=69.63 Aligned_cols=98 Identities=26% Similarity=0.368 Sum_probs=69.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||+|.+|+-+|..|++.|.+|+++++.+.+...
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 221 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA------------------------------------------ 221 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc------------------------------------------
Confidence 48999999999999999999999999999986542100
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEec--C--cEEEeeEEEecC
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVD--G--TIVKTKFLIGCD 161 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~--g--~~~~a~~vI~a~ 161 (184)
.... -...+.+.|.+. +++++.+++|+++...+ .. +.+...+ | +.+.+|.|++|+
T Consensus 222 -----------~d~~----~~~~~~~~l~~~--gi~i~~~~~v~~i~~~~---~~-v~v~~~~~~g~~~~i~~D~vl~a~ 280 (475)
T PRK06327 222 -----------ADEQ----VAKEAAKAFTKQ--GLDIHLGVKIGEIKTGG---KG-VSVAYTDADGEAQTLEVDKLIVSI 280 (475)
T ss_pred -----------CCHH----HHHHHHHHHHHc--CcEEEeCcEEEEEEEcC---CE-EEEEEEeCCCceeEEEcCEEEEcc
Confidence 0000 012333444433 89999999999998664 33 4455433 3 478999999999
Q ss_pred CcchH
Q 030042 162 GIHST 166 (184)
Q Consensus 162 G~~s~ 166 (184)
|..+.
T Consensus 281 G~~p~ 285 (475)
T PRK06327 281 GRVPN 285 (475)
T ss_pred CCccC
Confidence 97654
No 279
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.66 E-value=2.4e-07 Score=72.22 Aligned_cols=75 Identities=15% Similarity=0.221 Sum_probs=56.4
Q ss_pred eeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEe---cC--cEEEeeEEEecCCcch-HHHhhhCC
Q 030042 102 RFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLV---DG--TIVKTKFLIGCDGIHS-TVAWWLGL 173 (184)
Q Consensus 102 ~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~g--~~~~a~~vI~a~G~~s-~~~~~~~~ 173 (184)
.++++..+...+.+.+. |++++.+++|+++...+ +.. +.|.+. +| ..+.|+.||+|+|.|+ .+.++++.
T Consensus 123 g~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~--~~v-~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~ 199 (516)
T TIGR03377 123 GTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREG--GRV-TGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGL 199 (516)
T ss_pred cEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEEC--CEE-EEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCC
Confidence 46788888888877774 89999999999998765 232 444442 34 3789999999999998 47777777
Q ss_pred CCCccc
Q 030042 174 SEPLNV 179 (184)
Q Consensus 174 ~~~~~~ 179 (184)
+.|..+
T Consensus 200 ~~~i~p 205 (516)
T TIGR03377 200 DIRMFP 205 (516)
T ss_pred CCceec
Confidence 666544
No 280
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.65 E-value=6.2e-07 Score=69.04 Aligned_cols=98 Identities=22% Similarity=0.354 Sum_probs=68.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||||+.|+-+|..|++.|.+|+++|+.+.....
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~------------------------------------------ 212 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG------------------------------------------ 212 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC------------------------------------------
Confidence 47999999999999999999999999999986542100
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEe---c--CcEEEeeEEEec
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV---D--GTIVKTKFLIGC 160 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~--g~~~~a~~vI~a 160 (184)
.+. -....+.+.|.+. +++++.+++|++++..+ +. +.+... + ++.+.+|.|+.|
T Consensus 213 -------------~d~--~~~~~l~~~l~~~--gV~i~~~~~V~~i~~~~---~~-v~v~~~~~~~g~~~~i~~D~vi~a 271 (466)
T PRK06115 213 -------------TDT--ETAKTLQKALTKQ--GMKFKLGSKVTGATAGA---DG-VSLTLEPAAGGAAETLQADYVLVA 271 (466)
T ss_pred -------------CCH--HHHHHHHHHHHhc--CCEEEECcEEEEEEEcC---Ce-EEEEEEEcCCCceeEEEeCEEEEc
Confidence 000 0012344444443 89999999999998654 23 444332 2 357999999999
Q ss_pred CCcchH
Q 030042 161 DGIHST 166 (184)
Q Consensus 161 ~G~~s~ 166 (184)
+|..+.
T Consensus 272 ~G~~pn 277 (466)
T PRK06115 272 IGRRPY 277 (466)
T ss_pred cCCccc
Confidence 998653
No 281
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.65 E-value=7e-08 Score=74.28 Aligned_cols=60 Identities=30% Similarity=0.433 Sum_probs=46.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcccee----------------eecccHHHHHHHcCChHHH
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAI----------------SFAPNAWLALDALGVSHKL 66 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~ 66 (184)
+|+|||||++|+++|+.|++.|++|+|+|+.+..++..++. ...+...+.++++|+.+.+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~ 76 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNL 76 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccc
Confidence 58999999999999999999999999999998876532221 0134567777888876544
No 282
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=4.6e-08 Score=73.83 Aligned_cols=40 Identities=43% Similarity=0.574 Sum_probs=36.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccce
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAA 46 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~ 46 (184)
+|+|+|||++||++|++|+.+|++|+|+|+++..|+.-++
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s 41 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVAS 41 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeee
Confidence 7999999999999999999999999999999998876544
No 283
>PRK14727 putative mercuric reductase; Provisional
Probab=98.64 E-value=5.8e-07 Score=69.45 Aligned_cols=96 Identities=17% Similarity=0.226 Sum_probs=68.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
-+++|||+|+.|+-+|..|++.|.+|+++++..... . + +
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~-~-----~---------------------------------d-- 227 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLF-R-----E---------------------------------D-- 227 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCC-c-----c---------------------------------h--
Confidence 479999999999999999999999999998742100 0 0 0
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS 165 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s 165 (184)
+. ....+.+.|.+. +++++.+++++++...+ +. +.+.+.++ ++.+|.||.|+|..+
T Consensus 228 -------------~~----~~~~l~~~L~~~--GV~i~~~~~V~~i~~~~---~~-~~v~~~~g-~i~aD~VlvA~G~~p 283 (479)
T PRK14727 228 -------------PL----LGETLTACFEKE--GIEVLNNTQASLVEHDD---NG-FVLTTGHG-ELRAEKLLISTGRHA 283 (479)
T ss_pred -------------HH----HHHHHHHHHHhC--CCEEEcCcEEEEEEEeC---CE-EEEEEcCC-eEEeCEEEEccCCCC
Confidence 00 012334444433 89999999999998654 33 66666665 589999999999876
Q ss_pred H
Q 030042 166 T 166 (184)
Q Consensus 166 ~ 166 (184)
.
T Consensus 284 n 284 (479)
T PRK14727 284 N 284 (479)
T ss_pred C
Confidence 4
No 284
>PRK14694 putative mercuric reductase; Provisional
Probab=98.64 E-value=5.3e-07 Score=69.45 Aligned_cols=96 Identities=19% Similarity=0.295 Sum_probs=68.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||+|++|+-+|..|++.|.+|+++++..... .
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~-~------------------------------------------ 215 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRVLS-Q------------------------------------------ 215 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC-C------------------------------------------
Confidence 479999999999999999999999999998632110 0
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS 165 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s 165 (184)
..+. ....+.+.|.+. +++++.++++.++...+ .. +.+.+.++ ++.+|.||.|+|..+
T Consensus 216 -----------~~~~----~~~~l~~~l~~~--GI~v~~~~~v~~i~~~~---~~-~~v~~~~~-~i~~D~vi~a~G~~p 273 (468)
T PRK14694 216 -----------EDPA----VGEAIEAAFRRE--GIEVLKQTQASEVDYNG---RE-FILETNAG-TLRAEQLLVATGRTP 273 (468)
T ss_pred -----------CCHH----HHHHHHHHHHhC--CCEEEeCCEEEEEEEcC---CE-EEEEECCC-EEEeCEEEEccCCCC
Confidence 0000 012344444443 89999999999997654 33 55655554 699999999999876
Q ss_pred H
Q 030042 166 T 166 (184)
Q Consensus 166 ~ 166 (184)
.
T Consensus 274 n 274 (468)
T PRK14694 274 N 274 (468)
T ss_pred C
Confidence 4
No 285
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.64 E-value=5.4e-07 Score=69.91 Aligned_cols=97 Identities=20% Similarity=0.197 Sum_probs=70.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||||+.|+-+|..|++.|.+|+++++.... ..
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l-~~------------------------------------------ 219 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPL-RG------------------------------------------ 219 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCccc-cc------------------------------------------
Confidence 37999999999999999999999999999863110 00
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS 165 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s 165 (184)
.... ....+.+.|.+. +++++.++.+.++...+ .. ..+.+.+|+++.+|.|+.|.|..+
T Consensus 220 -----------~d~~----~~~~l~~~l~~~--GV~i~~~~~v~~v~~~~---~~-~~v~~~~g~~i~~D~vl~a~G~~p 278 (499)
T PTZ00052 220 -----------FDRQ----CSEKVVEYMKEQ--GTLFLEGVVPINIEKMD---DK-IKVLFSDGTTELFDTVLYATGRKP 278 (499)
T ss_pred -----------CCHH----HHHHHHHHHHHc--CCEEEcCCeEEEEEEcC---Ce-EEEEECCCCEEEcCEEEEeeCCCC
Confidence 0000 013344445444 89999999999888654 23 556677888899999999999866
Q ss_pred H
Q 030042 166 T 166 (184)
Q Consensus 166 ~ 166 (184)
.
T Consensus 279 n 279 (499)
T PTZ00052 279 D 279 (499)
T ss_pred C
Confidence 4
No 286
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.63 E-value=6.7e-07 Score=68.42 Aligned_cols=97 Identities=16% Similarity=0.257 Sum_probs=70.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||||+.|+-+|..|++.|.+|+++++.+.....
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 196 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR------------------------------------------ 196 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC------------------------------------------
Confidence 47999999999999999999999999999986432100
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS 165 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s 165 (184)
.... -...+.+.|.+. +++++.+++++++...+ .. +.+.+.++ .+.+|.|+.|+|..+
T Consensus 197 -----------~~~~----~~~~l~~~l~~~--gV~v~~~~~v~~i~~~~---~~-v~v~~~~g-~i~~D~vl~a~G~~p 254 (441)
T PRK08010 197 -----------EDRD----IADNIATILRDQ--GVDIILNAHVERISHHE---NQ-VQVHSEHA-QLAVDALLIASGRQP 254 (441)
T ss_pred -----------cCHH----HHHHHHHHHHhC--CCEEEeCCEEEEEEEcC---CE-EEEEEcCC-eEEeCEEEEeecCCc
Confidence 0000 012344444443 89999999999998654 33 56666555 588999999999876
Q ss_pred H
Q 030042 166 T 166 (184)
Q Consensus 166 ~ 166 (184)
.
T Consensus 255 n 255 (441)
T PRK08010 255 A 255 (441)
T ss_pred C
Confidence 4
No 287
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.62 E-value=5.6e-07 Score=68.87 Aligned_cols=105 Identities=20% Similarity=0.261 Sum_probs=70.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||||++|+-+|..|++.|.+|+++++.+.....
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 187 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPD------------------------------------------ 187 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCch------------------------------------------
Confidence 47999999999999999999999999999876432000
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS 165 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s 165 (184)
.+. +. -...+.+.+.+. +++++++++++++...+ .. ..+.+++ .++.+|.||.|+|..+
T Consensus 188 ----~~~------~~----~~~~l~~~l~~~--gI~v~~~~~v~~i~~~~---~~-~~v~~~~-~~i~~d~vi~a~G~~p 246 (444)
T PRK09564 188 ----SFD------KE----ITDVMEEELREN--GVELHLNEFVKSLIGED---KV-EGVVTDK-GEYEADVVIVATGVKP 246 (444)
T ss_pred ----hcC------HH----HHHHHHHHHHHC--CCEEEcCCEEEEEecCC---cE-EEEEeCC-CEEEcCEEEECcCCCc
Confidence 000 00 012233333333 89999999999996532 32 4455544 4799999999999764
Q ss_pred --HHHhhhCC
Q 030042 166 --TVAWWLGL 173 (184)
Q Consensus 166 --~~~~~~~~ 173 (184)
.+.+..++
T Consensus 247 ~~~~l~~~gl 256 (444)
T PRK09564 247 NTEFLEDTGL 256 (444)
T ss_pred CHHHHHhcCc
Confidence 23344443
No 288
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.61 E-value=1.2e-07 Score=74.60 Aligned_cols=36 Identities=39% Similarity=0.616 Sum_probs=33.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR 41 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~ 41 (184)
.+|+|||+||+|+++|+.|++.|.+|+|+|+.+..+
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~G 173 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLG 173 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 589999999999999999999999999999987654
No 289
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.61 E-value=6.9e-08 Score=68.73 Aligned_cols=39 Identities=33% Similarity=0.547 Sum_probs=35.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~ 43 (184)
+||++|||+|++|+.+|..|+++|.+|+|+||++-.++.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGN 39 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGN 39 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCc
Confidence 489999999999999999999999999999999876653
No 290
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.61 E-value=8.6e-07 Score=68.48 Aligned_cols=99 Identities=14% Similarity=0.167 Sum_probs=69.6
Q ss_pred ccEEEECCCHHHHHHHHHHHh---CCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042 6 KDVVIIGAGIAGLATALALKR---LGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG 82 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~---~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
.+++|||||+.|+-+|..++. .|.+|+|+|+.+.....
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~--------------------------------------- 228 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG--------------------------------------- 228 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc---------------------------------------
Confidence 479999999999999976654 48999999986542100
Q ss_pred CCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCC
Q 030042 83 TGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDG 162 (184)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G 162 (184)
+ + .--...+.+.|.+. +++++.+++++++...++ .. ..+.+.+++++.+|.||.|+|
T Consensus 229 --------~--------d--~~~~~~l~~~L~~~--GI~i~~~~~v~~i~~~~~--~~-~~v~~~~g~~i~~D~vl~a~G 285 (486)
T TIGR01423 229 --------F--------D--STLRKELTKQLRAN--GINIMTNENPAKVTLNAD--GS-KHVTFESGKTLDVDVVMMAIG 285 (486)
T ss_pred --------c--------C--HHHHHHHHHHHHHc--CCEEEcCCEEEEEEEcCC--ce-EEEEEcCCCEEEcCEEEEeeC
Confidence 0 0 00013344444443 899999999999986541 22 456666777899999999999
Q ss_pred cchH
Q 030042 163 IHST 166 (184)
Q Consensus 163 ~~s~ 166 (184)
....
T Consensus 286 ~~Pn 289 (486)
T TIGR01423 286 RVPR 289 (486)
T ss_pred CCcC
Confidence 7654
No 291
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.61 E-value=7.2e-07 Score=68.16 Aligned_cols=93 Identities=19% Similarity=0.367 Sum_probs=67.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
-+++|||||+.|+-+|..|++.|.+|+++++.+..... + +
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~----------------~----------------------d-- 188 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL----------------M----------------------D-- 188 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh----------------c----------------------C--
Confidence 47999999999999999999999999999986542100 0 0
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS 165 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s 165 (184)
.. -...+.+.|.+. +++++.++++++++. ..+.+.+|+.+.+|.|+.|+|...
T Consensus 189 -------------~~----~~~~l~~~l~~~--gI~i~~~~~v~~i~~--------~~v~~~~g~~~~~D~vl~a~G~~p 241 (438)
T PRK13512 189 -------------AD----MNQPILDELDKR--EIPYRLNEEIDAING--------NEVTFKSGKVEHYDMIIEGVGTHP 241 (438)
T ss_pred -------------HH----HHHHHHHHHHhc--CCEEEECCeEEEEeC--------CEEEECCCCEEEeCEEEECcCCCc
Confidence 00 012344444443 899999999999853 224556777899999999999755
No 292
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.60 E-value=5.3e-08 Score=70.51 Aligned_cols=34 Identities=35% Similarity=0.500 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCC-CCeEEEeccCC
Q 030042 6 KDVVIIGAGIAGLATALALKRLG-VEPLVLEKSDG 39 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g-~~v~vie~~~~ 39 (184)
||++|||+|++|+.+|..|++.+ .+|+|+|++..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 79999999999999999999987 69999999764
No 293
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.59 E-value=7.7e-07 Score=67.23 Aligned_cols=99 Identities=25% Similarity=0.359 Sum_probs=73.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||+|+.|+.+|..|+++|.+|+++|+.+.+.+.... +
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~-----------------~--------------------- 178 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD-----------------P--------------------- 178 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh-----------------H---------------------
Confidence 58999999999999999999999999999998765332100 0
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceE--EEEecCcEEEeeEEEecCCc
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVF--IHLVDGTIVKTKFLIGCDGI 163 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~--v~~~~g~~~~a~~vI~a~G~ 163 (184)
.-...+.+.+.+. +++++.++++.+++...+ .. .. +...++..+.+|.++.+.|.
T Consensus 179 ------------------~~~~~~~~~l~~~--gi~~~~~~~~~~i~~~~~--~~-~~~~~~~~~~~~~~~d~~~~~~g~ 235 (415)
T COG0446 179 ------------------EVAEELAELLEKY--GVELLLGTKVVGVEGKGN--TL-VVERVVGIDGEEIKADLVIIGPGE 235 (415)
T ss_pred ------------------HHHHHHHHHHHHC--CcEEEeCCceEEEEcccC--cc-eeeEEEEeCCcEEEeeEEEEeecc
Confidence 0012334444444 789999999999998762 21 22 57777888999999999997
Q ss_pred ch
Q 030042 164 HS 165 (184)
Q Consensus 164 ~s 165 (184)
..
T Consensus 236 ~p 237 (415)
T COG0446 236 RP 237 (415)
T ss_pred cc
Confidence 65
No 294
>PRK02106 choline dehydrogenase; Validated
Probab=98.58 E-value=7e-08 Score=75.82 Aligned_cols=38 Identities=42% Similarity=0.515 Sum_probs=35.0
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHh-CCCCeEEEeccC
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKR-LGVEPLVLEKSD 38 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~-~g~~v~vie~~~ 38 (184)
|...+||++|||||++|+.+|..|++ .|.+|+|||++.
T Consensus 1 ~~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 1 MTTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CCCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 55578999999999999999999999 799999999985
No 295
>PLN02612 phytoene desaturase
Probab=98.57 E-value=1.9e-07 Score=73.42 Aligned_cols=61 Identities=41% Similarity=0.543 Sum_probs=47.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcccee----------------eecccHHHHHHHcCChHH
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAI----------------SFAPNAWLALDALGVSHK 65 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~ 65 (184)
..+|+|||+|++|+++|+.|+++|.+|+|+|+.+..++...+. ...+...++++++|+.+.
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~ 169 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDR 169 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCccc
Confidence 4689999999999999999999999999999987765543221 123557778888887543
No 296
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.57 E-value=1.8e-06 Score=66.60 Aligned_cols=97 Identities=19% Similarity=0.342 Sum_probs=67.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
-+++|||||+.|+-+|..|++.|.+|+++|+.+.....
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~------------------------------------------ 212 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA------------------------------------------ 212 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc------------------------------------------
Confidence 47999999999999999999999999999986542100
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC-CCeeeeCceEEEEeccCCCCCcceEEEEec--C--cEEEeeEEEec
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELP-NGTIHFSSKIAAIDSQTHDGSSPVFIHLVD--G--TIVKTKFLIGC 160 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~--g--~~~~a~~vI~a 160 (184)
. ..++.+.+.+.+. .++++.++++++++..+ +. +.+...+ + +++.+|.||.|
T Consensus 213 ------------------~-d~~~~~~~~~~l~~~v~i~~~~~v~~i~~~~---~~-~~v~~~~~~~~~~~i~~D~vi~a 269 (471)
T PRK06467 213 ------------------A-DKDIVKVFTKRIKKQFNIMLETKVTAVEAKE---DG-IYVTMEGKKAPAEPQRYDAVLVA 269 (471)
T ss_pred ------------------C-CHHHHHHHHHHHhhceEEEcCCEEEEEEEcC---CE-EEEEEEeCCCcceEEEeCEEEEe
Confidence 0 0122222333221 37788899999998654 33 5555433 2 46999999999
Q ss_pred CCcchHH
Q 030042 161 DGIHSTV 167 (184)
Q Consensus 161 ~G~~s~~ 167 (184)
+|..+..
T Consensus 270 ~G~~pn~ 276 (471)
T PRK06467 270 VGRVPNG 276 (471)
T ss_pred ecccccC
Confidence 9987643
No 297
>PRK13748 putative mercuric reductase; Provisional
Probab=98.57 E-value=1e-06 Score=69.41 Aligned_cols=96 Identities=15% Similarity=0.209 Sum_probs=69.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||||+.|+-+|..|++.|.+|+++++..... .
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~-~------------------------------------------ 307 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTLFF-R------------------------------------------ 307 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcccc-c------------------------------------------
Confidence 479999999999999999999999999999742110 0
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS 165 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s 165 (184)
+. +. ....+.+.|.+. +++++.+++++++...+ .. +.+.+.++ .+.+|.||.|+|...
T Consensus 308 -----~d------~~----~~~~l~~~l~~~--gI~i~~~~~v~~i~~~~---~~-~~v~~~~~-~i~~D~vi~a~G~~p 365 (561)
T PRK13748 308 -----ED------PA----IGEAVTAAFRAE--GIEVLEHTQASQVAHVD---GE-FVLTTGHG-ELRADKLLVATGRAP 365 (561)
T ss_pred -----cC------HH----HHHHHHHHHHHC--CCEEEcCCEEEEEEecC---CE-EEEEecCC-eEEeCEEEEccCCCc
Confidence 00 00 012344444443 89999999999998654 33 55666655 699999999999865
Q ss_pred H
Q 030042 166 T 166 (184)
Q Consensus 166 ~ 166 (184)
.
T Consensus 366 n 366 (561)
T PRK13748 366 N 366 (561)
T ss_pred C
Confidence 4
No 298
>PLN02487 zeta-carotene desaturase
Probab=98.56 E-value=2e-07 Score=72.95 Aligned_cols=61 Identities=30% Similarity=0.412 Sum_probs=48.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCcccee----------------eecccHHHHHHHcCChHHH
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAI----------------SFAPNAWLALDALGVSHKL 66 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~ 66 (184)
.+|+|||+|++|+++|+.|++.|++|+|+|+.+..++..++. ...+....+++++|+.+++
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~ 152 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENL 152 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCcccc
Confidence 599999999999999999999999999999988776422111 1235578888889887654
No 299
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=98.55 E-value=3.6e-08 Score=70.18 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=30.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhC-CC-CeEEEeccCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRL-GV-EPLVLEKSDG 39 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~-g~-~v~vie~~~~ 39 (184)
.++.|+|||||..|+.+|..+.+. +. +|.|+|....
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 468999999999999999999875 33 7999998643
No 300
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.54 E-value=1.5e-06 Score=67.17 Aligned_cols=97 Identities=13% Similarity=0.118 Sum_probs=68.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
-+++|||||+.|+-+|..|++.|.+|+++++. .....
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~------------------------------------------ 217 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRG------------------------------------------ 217 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccccc------------------------------------------
Confidence 37999999999999999999999999999863 21000
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecC---cEEEeeEEEecCC
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG---TIVKTKFLIGCDG 162 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g---~~~~a~~vI~a~G 162 (184)
.... -...+.+.|.+. +++++.++.++++...+ .. +.+...++ +++.+|.|+.|.|
T Consensus 218 -----------~d~~----~~~~l~~~L~~~--gV~i~~~~~v~~v~~~~---~~-~~v~~~~~~~~~~i~~D~vl~a~G 276 (484)
T TIGR01438 218 -----------FDQD----CANKVGEHMEEH--GVKFKRQFVPIKVEQIE---AK-VKVTFTDSTNGIEEEYDTVLLAIG 276 (484)
T ss_pred -----------cCHH----HHHHHHHHHHHc--CCEEEeCceEEEEEEcC---Ce-EEEEEecCCcceEEEeCEEEEEec
Confidence 0000 012344445444 89999999998888654 22 45555554 4799999999999
Q ss_pred cchH
Q 030042 163 IHST 166 (184)
Q Consensus 163 ~~s~ 166 (184)
....
T Consensus 277 ~~pn 280 (484)
T TIGR01438 277 RDAC 280 (484)
T ss_pred CCcC
Confidence 7654
No 301
>PTZ00058 glutathione reductase; Provisional
Probab=98.53 E-value=2e-06 Score=67.42 Aligned_cols=99 Identities=20% Similarity=0.309 Sum_probs=69.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||||..|+-+|..|++.|.+|+++++.+.....
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~------------------------------------------ 275 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK------------------------------------------ 275 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc------------------------------------------
Confidence 47999999999999999999999999999986532100
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecC-cEEEeeEEEecCCcc
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG-TIVKTKFLIGCDGIH 164 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g-~~~~a~~vI~a~G~~ 164 (184)
+ + .--...+.+.|.+. +++++.++++.+++..+ +.. +.+...++ +++.+|.|+.|+|..
T Consensus 276 -----~--------d--~~i~~~l~~~L~~~--GV~i~~~~~V~~I~~~~--~~~-v~v~~~~~~~~i~aD~VlvA~Gr~ 335 (561)
T PTZ00058 276 -----F--------D--ETIINELENDMKKN--NINIITHANVEEIEKVK--EKN-LTIYLSDGRKYEHFDYVIYCVGRS 335 (561)
T ss_pred -----C--------C--HHHHHHHHHHHHHC--CCEEEeCCEEEEEEecC--CCc-EEEEECCCCEEEECCEEEECcCCC
Confidence 0 0 00012344444443 89999999999998654 123 44444343 579999999999976
Q ss_pred hH
Q 030042 165 ST 166 (184)
Q Consensus 165 s~ 166 (184)
..
T Consensus 336 Pn 337 (561)
T PTZ00058 336 PN 337 (561)
T ss_pred CC
Confidence 54
No 302
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.50 E-value=1.9e-07 Score=70.06 Aligned_cols=38 Identities=37% Similarity=0.731 Sum_probs=35.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~ 42 (184)
.-+++|||||++|+.+|..|+..|++|.++||.+..++
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGG 161 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGG 161 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccc
Confidence 35899999999999999999999999999999987765
No 303
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.49 E-value=2.6e-07 Score=70.72 Aligned_cols=38 Identities=42% Similarity=0.517 Sum_probs=34.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~ 42 (184)
.++|+|||||++|+++|+.|++.|.+|+|+|+.+.+++
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG 170 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGG 170 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 57999999999999999999999999999999876643
No 304
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.46 E-value=2.6e-07 Score=66.13 Aligned_cols=34 Identities=38% Similarity=0.656 Sum_probs=32.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
+|||+|||||.+|+++|+.|.++|.+++++.+..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 6999999999999999999999999999998754
No 305
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.46 E-value=3e-07 Score=70.62 Aligned_cols=39 Identities=28% Similarity=0.330 Sum_probs=34.8
Q ss_pred cccEEEECCCHHHHHHHHHHHh--CCCCeEEEeccCCCCCc
Q 030042 5 EKDVVIIGAGIAGLATALALKR--LGVEPLVLEKSDGLRGT 43 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~--~g~~v~vie~~~~~~~~ 43 (184)
..+|+||||||+|+.+|..|++ .|.+|+|||+.+.+++.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGl 66 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGL 66 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcce
Confidence 4689999999999999999987 69999999999877654
No 306
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.45 E-value=2.5e-06 Score=65.01 Aligned_cols=100 Identities=20% Similarity=0.263 Sum_probs=68.4
Q ss_pred cEEEECCCHHHHHHHHHHHh--------------CCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCC
Q 030042 7 DVVIIGAGIAGLATALALKR--------------LGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPP 72 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~--------------~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (184)
.++|||||++|+-+|..|+. .+.+|+++++.+.....
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~----------------------------- 225 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS----------------------------- 225 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc-----------------------------
Confidence 79999999999999999875 36778888876432100
Q ss_pred ccceEEEecCCCceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEE
Q 030042 73 VNRISVTNLGTGATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIV 152 (184)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~ 152 (184)
+ . .--...+.+.|.+. +++++.+++|+++..+ .+.+++|+++
T Consensus 226 ------------------~--------~--~~~~~~~~~~L~~~--gV~v~~~~~v~~v~~~--------~v~~~~g~~i 267 (424)
T PTZ00318 226 ------------------F--------D--QALRKYGQRRLRRL--GVDIRTKTAVKEVLDK--------EVVLKDGEVI 267 (424)
T ss_pred ------------------C--------C--HHHHHHHHHHHHHC--CCEEEeCCeEEEEeCC--------EEEECCCCEE
Confidence 0 0 00023444555443 8999999999988643 2456788899
Q ss_pred EeeEEEecCCcch-HHHhhhCC
Q 030042 153 KTKFLIGCDGIHS-TVAWWLGL 173 (184)
Q Consensus 153 ~a~~vI~a~G~~s-~~~~~~~~ 173 (184)
.+|.+|.|.|... .+.+.+++
T Consensus 268 ~~d~vi~~~G~~~~~~~~~~~l 289 (424)
T PTZ00318 268 PTGLVVWSTGVGPGPLTKQLKV 289 (424)
T ss_pred EccEEEEccCCCCcchhhhcCC
Confidence 9999999999644 23344443
No 307
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.44 E-value=2.9e-07 Score=73.66 Aligned_cols=38 Identities=47% Similarity=0.625 Sum_probs=34.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~ 42 (184)
..+|+||||||+|+++|+.|++.|++|+|+|+.+.+++
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG 364 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGG 364 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 46899999999999999999999999999999877654
No 308
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.44 E-value=3.2e-07 Score=69.29 Aligned_cols=34 Identities=38% Similarity=0.612 Sum_probs=32.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
+||++|||+|++|+++|+.|++.|.+|+|+|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5899999999999999999999999999999864
No 309
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.43 E-value=8.3e-07 Score=66.22 Aligned_cols=51 Identities=10% Similarity=0.192 Sum_probs=37.8
Q ss_pred HHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCc-EEEeeEEEecCCcch-HHHhh
Q 030042 110 LQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGT-IVKTKFLIGCDGIHS-TVAWW 170 (184)
Q Consensus 110 ~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~-~~~a~~vI~a~G~~s-~~~~~ 170 (184)
.+.|.+. |++++.++.|++++.+. |.+++|. .+.++.+|=|+|... ++.+.
T Consensus 216 ~~~L~~~--GV~v~l~~~Vt~v~~~~--------v~~~~g~~~I~~~tvvWaaGv~a~~~~~~ 268 (405)
T COG1252 216 ERALEKL--GVEVLLGTPVTEVTPDG--------VTLKDGEEEIPADTVVWAAGVRASPLLKD 268 (405)
T ss_pred HHHHHHC--CCEEEcCCceEEECCCc--------EEEccCCeeEecCEEEEcCCCcCChhhhh
Confidence 3344444 99999999999998765 5555555 599999999999754 45454
No 310
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.42 E-value=7.2e-06 Score=63.16 Aligned_cols=97 Identities=22% Similarity=0.362 Sum_probs=67.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||+|++|+-+|..|++.|.+|+++++.+.....
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 207 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL------------------------------------------ 207 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc------------------------------------------
Confidence 47999999999999999999999999999986542100
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCC-CCeeeeCceEEEEeccCCCCCcceEEEEecC--cEEEeeEEEecCC
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELP-NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG--TIVKTKFLIGCDG 162 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g--~~~~a~~vI~a~G 162 (184)
. ..++.+.+.+.++ .+++++++++++++..+ +.. +.+...++ +++.+|.||.|+|
T Consensus 208 ------------------~-d~~~~~~~~~~l~~~I~i~~~~~v~~i~~~~--~~~-v~~~~~~~~~~~i~~D~vi~a~G 265 (460)
T PRK06292 208 ------------------E-DPEVSKQAQKILSKEFKIKLGAKVTSVEKSG--DEK-VEELEKGGKTETIEADYVLVATG 265 (460)
T ss_pred ------------------h-hHHHHHHHHHHHhhccEEEcCCEEEEEEEcC--Cce-EEEEEcCCceEEEEeCEEEEccC
Confidence 0 0122223322222 27889999999998654 122 44433333 5799999999999
Q ss_pred cchH
Q 030042 163 IHST 166 (184)
Q Consensus 163 ~~s~ 166 (184)
....
T Consensus 266 ~~p~ 269 (460)
T PRK06292 266 RRPN 269 (460)
T ss_pred CccC
Confidence 8654
No 311
>PRK10262 thioredoxin reductase; Provisional
Probab=98.42 E-value=8.1e-06 Score=59.91 Aligned_cols=96 Identities=21% Similarity=0.291 Sum_probs=65.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||+|.+|+-+|..|++.+.+|+++++.+....
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~------------------------------------------- 183 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA------------------------------------------- 183 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCC-------------------------------------------
Confidence 4799999999999999999999999999998642100
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEec------CcEEEeeEEEe
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVD------GTIVKTKFLIG 159 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~------g~~~~a~~vI~ 159 (184)
. ......+.+.|.+. +++++.+++++++...+ ... ..|.+.+ .+++.+|.||.
T Consensus 184 --------------~--~~~~~~~~~~l~~~--gV~i~~~~~v~~v~~~~--~~~-~~v~~~~~~~~~~~~~i~~D~vv~ 242 (321)
T PRK10262 184 --------------E--KILIKRLMDKVENG--NIILHTNRTLEEVTGDQ--MGV-TGVRLRDTQNSDNIESLDVAGLFV 242 (321)
T ss_pred --------------C--HHHHHHHHhhccCC--CeEEEeCCEEEEEEcCC--ccE-EEEEEEEcCCCCeEEEEECCEEEE
Confidence 0 00012222223222 78999999999997653 121 2343332 14799999999
Q ss_pred cCCcch
Q 030042 160 CDGIHS 165 (184)
Q Consensus 160 a~G~~s 165 (184)
|.|..+
T Consensus 243 a~G~~p 248 (321)
T PRK10262 243 AIGHSP 248 (321)
T ss_pred EeCCcc
Confidence 999755
No 312
>PLN02546 glutathione reductase
Probab=98.41 E-value=4.8e-06 Score=65.37 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=68.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
-+++|||||..|+-+|..|++.|.+|+++++.+.....
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~------------------------------------------ 290 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG------------------------------------------ 290 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc------------------------------------------
Confidence 47999999999999999999999999999986532100
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS 165 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s 165 (184)
+ + .-.+..+.+.|.+. |++++.+++++++...++ .. +.+.+.+++...+|.||.|.|...
T Consensus 291 -----~--------d--~~~~~~l~~~L~~~--GV~i~~~~~v~~i~~~~~--g~-v~v~~~~g~~~~~D~Viva~G~~P 350 (558)
T PLN02546 291 -----F--------D--EEVRDFVAEQMSLR--GIEFHTEESPQAIIKSAD--GS-LSLKTNKGTVEGFSHVMFATGRKP 350 (558)
T ss_pred -----c--------C--HHHHHHHHHHHHHC--CcEEEeCCEEEEEEEcCC--CE-EEEEECCeEEEecCEEEEeecccc
Confidence 0 0 00012333444433 899999999999976431 22 556655554445899999999866
Q ss_pred H
Q 030042 166 T 166 (184)
Q Consensus 166 ~ 166 (184)
.
T Consensus 351 n 351 (558)
T PLN02546 351 N 351 (558)
T ss_pred C
Confidence 4
No 313
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.39 E-value=5.9e-06 Score=64.50 Aligned_cols=93 Identities=28% Similarity=0.312 Sum_probs=65.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||||+.|+-+|..|++.+.+|+++++.+....
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~------------------------------------------- 389 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA------------------------------------------- 389 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------------------------------------------
Confidence 4899999999999999999999999999987542100
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEec---C--cEEEeeEEEec
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVD---G--TIVKTKFLIGC 160 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~---g--~~~~a~~vI~a 160 (184)
...+.+.+.+. .++++++++.++++...+ +.. ..|.+.+ + +++.+|.|+.|
T Consensus 390 --------------------~~~l~~~l~~~-~gV~i~~~~~v~~i~~~~--~~v-~~v~~~~~~~~~~~~i~~D~vi~a 445 (515)
T TIGR03140 390 --------------------DKVLQDKLKSL-PNVDILTSAQTTEIVGDG--DKV-TGIRYQDRNSGEEKQLDLDGVFVQ 445 (515)
T ss_pred --------------------hHHHHHHHhcC-CCCEEEECCeeEEEEcCC--CEE-EEEEEEECCCCcEEEEEcCEEEEE
Confidence 01223333322 389999999999997653 121 2344432 2 46899999999
Q ss_pred CCcch
Q 030042 161 DGIHS 165 (184)
Q Consensus 161 ~G~~s 165 (184)
.|...
T Consensus 446 ~G~~P 450 (515)
T TIGR03140 446 IGLVP 450 (515)
T ss_pred eCCcC
Confidence 99754
No 314
>PLN02529 lysine-specific histone demethylase 1
Probab=98.39 E-value=5.9e-07 Score=72.02 Aligned_cols=39 Identities=44% Similarity=0.657 Sum_probs=35.1
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~ 42 (184)
...||+|||+|++|+++|..|+++|++|+|+|+.+..++
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG 197 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGG 197 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcC
Confidence 357999999999999999999999999999999876544
No 315
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.38 E-value=7.1e-07 Score=68.82 Aligned_cols=38 Identities=42% Similarity=0.643 Sum_probs=34.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~ 42 (184)
..+|+|||+|++|+++|..|++.|.+|+|+|+.+.+++
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG 180 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGG 180 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCc
Confidence 36999999999999999999999999999999877654
No 316
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.38 E-value=6.3e-07 Score=72.33 Aligned_cols=38 Identities=39% Similarity=0.619 Sum_probs=35.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~ 42 (184)
..+|+|||||++|+++|+.|++.|++|+|+|+...+++
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GG 275 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGG 275 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCC
Confidence 57899999999999999999999999999999887754
No 317
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.37 E-value=6.5e-07 Score=69.56 Aligned_cols=38 Identities=24% Similarity=0.175 Sum_probs=34.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~ 43 (184)
|||+|||+||+|+++|+.|++.|.+|++||+....+..
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~ 38 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFL 38 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCC
Confidence 69999999999999999999999999999998877543
No 318
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=6.5e-06 Score=59.50 Aligned_cols=33 Identities=33% Similarity=0.524 Sum_probs=31.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEec
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEK 36 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~ 36 (184)
-+||.+|||||.+||++|..++..|.+|.++|-
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 368999999999999999999999999999996
No 319
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.34 E-value=4.2e-06 Score=62.52 Aligned_cols=62 Identities=21% Similarity=0.259 Sum_probs=50.2
Q ss_pred HHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchHHHhhh
Q 030042 107 KKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVAWWL 171 (184)
Q Consensus 107 ~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~~~~~~ 171 (184)
..+...+.+.++ |.+|+.+.+|.+|..++ +.. +.|..+||+.+.++.||--++.|-+..+.+
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd~--gka-~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILLDS--GKA-VGVRLADGTEVRSKIVVSNATPWDTFEKLL 327 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheeccC--CeE-EEEEecCCcEEEeeeeecCCchHHHHHHhC
Confidence 345556666554 88999999999999887 455 889999999999999999888888876666
No 320
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.33 E-value=1.7e-06 Score=62.55 Aligned_cols=40 Identities=33% Similarity=0.435 Sum_probs=35.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCc
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGT 43 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~ 43 (184)
+.||.+|||||..|++.|...+.+|.++.++|..-..++.
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGT 58 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGT 58 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCce
Confidence 4799999999999999999999999999999986555554
No 321
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.33 E-value=1.5e-05 Score=57.67 Aligned_cols=92 Identities=23% Similarity=0.343 Sum_probs=65.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+++|||+|++|+-+|..|++.+.+|+++++.+....
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~------------------------------------------- 178 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA------------------------------------------- 178 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc-------------------------------------------
Confidence 4899999999999999999999999999998532100
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEe---cC--cEEEeeEEEec
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV---DG--TIVKTKFLIGC 160 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~g--~~~~a~~vI~a 160 (184)
...+.+.+.+. .+++++++++++++..++ .. ..+... ++ +++.+|.||.|
T Consensus 179 --------------------~~~~~~~l~~~-~gv~~~~~~~v~~i~~~~---~~-~~v~~~~~~~g~~~~i~~D~vi~a 233 (300)
T TIGR01292 179 --------------------EKILLDRLRKN-PNIEFLWNSTVKEIVGDN---KV-EGVKIKNTVTGEEEELKVDGVFIA 233 (300)
T ss_pred --------------------CHHHHHHHHhC-CCeEEEeccEEEEEEccC---cE-EEEEEEecCCCceEEEEccEEEEe
Confidence 01233444332 378899999999998653 22 233322 23 57999999999
Q ss_pred CCcch
Q 030042 161 DGIHS 165 (184)
Q Consensus 161 ~G~~s 165 (184)
+|...
T Consensus 234 ~G~~~ 238 (300)
T TIGR01292 234 IGHEP 238 (300)
T ss_pred eCCCC
Confidence 99754
No 322
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.33 E-value=4.1e-06 Score=62.84 Aligned_cols=39 Identities=18% Similarity=0.179 Sum_probs=36.2
Q ss_pred CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCc
Q 030042 119 NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGI 163 (184)
Q Consensus 119 ~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~ 163 (184)
++++++++.|+.+...+ -++...+|+++.++.+|+|||.
T Consensus 141 gIe~~~~t~v~~~D~~~------K~l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 141 GIELILGTSVVKADLAS------KTLVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred CceEEEcceeEEeeccc------cEEEeCCCceeecceEEEeecC
Confidence 89999999999999876 6788999999999999999998
No 323
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.32 E-value=1.1e-06 Score=67.09 Aligned_cols=40 Identities=30% Similarity=0.185 Sum_probs=34.5
Q ss_pred cccEEEECCCHHHHHHHHHHH-hCCCCeEEEeccCCCCCcc
Q 030042 5 EKDVVIIGAGIAGLATALALK-RLGVEPLVLEKSDGLRGTG 44 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~-~~g~~v~vie~~~~~~~~~ 44 (184)
...|+||||||+|+.+|..|. +.|++|.|+|+.+.+++.-
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLv 79 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLI 79 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEE
Confidence 358999999999999999764 6799999999999887643
No 324
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=98.31 E-value=1e-06 Score=62.19 Aligned_cols=40 Identities=30% Similarity=0.379 Sum_probs=31.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCC-------CCeEEEeccCCCCCc
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLG-------VEPLVLEKSDGLRGT 43 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g-------~~v~vie~~~~~~~~ 43 (184)
+..+|+|||+|+.|+++|+.+.+.. .+|.|++.+..+...
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~ 48 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTT 48 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccc
Confidence 4569999999999999998887743 579999776655433
No 325
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.31 E-value=9.5e-06 Score=60.94 Aligned_cols=101 Identities=17% Similarity=0.221 Sum_probs=78.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
..|+++|+|..|+-+|..|...+.+|+++++.+.+-..
T Consensus 214 ~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~------------------------------------------ 251 (478)
T KOG1336|consen 214 GKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPR------------------------------------------ 251 (478)
T ss_pred ceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhh------------------------------------------
Confidence 46999999999999999999999999999986543100
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS 165 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s 165 (184)
. .++. -++.+.+++.++ ++++..++.+.++.-+.+ |.. ..|...+|.++.||.||.++|+.+
T Consensus 252 ----l------f~~~----i~~~~~~y~e~k--gVk~~~~t~~s~l~~~~~-Gev-~~V~l~dg~~l~adlvv~GiG~~p 313 (478)
T KOG1336|consen 252 ----L------FGPS----IGQFYEDYYENK--GVKFYLGTVVSSLEGNSD-GEV-SEVKLKDGKTLEADLVVVGIGIKP 313 (478)
T ss_pred ----h------hhHH----HHHHHHHHHHhc--CeEEEEecceeecccCCC-CcE-EEEEeccCCEeccCeEEEeecccc
Confidence 0 0000 135566666666 899999999999988764 454 889999999999999999999865
Q ss_pred H
Q 030042 166 T 166 (184)
Q Consensus 166 ~ 166 (184)
.
T Consensus 314 ~ 314 (478)
T KOG1336|consen 314 N 314 (478)
T ss_pred c
Confidence 3
No 326
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.30 E-value=1e-05 Score=61.47 Aligned_cols=38 Identities=42% Similarity=0.517 Sum_probs=32.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhC----CCCeEEEeccCCCCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRL----GVEPLVLEKSDGLRG 42 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~----g~~v~vie~~~~~~~ 42 (184)
+.++=|||+|+++|++|.+|-|. |-+|.|+|+.+.+++
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GG 43 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGG 43 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCC
Confidence 45788999999999999999986 568999999886654
No 327
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.30 E-value=1.3e-05 Score=63.92 Aligned_cols=34 Identities=32% Similarity=0.371 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
-+++|||||..|+-+|..|++.|.+|+++|+.+.
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ 346 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ 346 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 3799999999999999999999999999998654
No 328
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.30 E-value=1.3e-06 Score=69.92 Aligned_cols=38 Identities=39% Similarity=0.570 Sum_probs=34.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~ 42 (184)
..+|+|||+|++|+++|+.|++.|++|+|+|+.+.+++
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG 230 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGG 230 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 36899999999999999999999999999999877653
No 329
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.30 E-value=7.9e-07 Score=72.68 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKS 37 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~ 37 (184)
.+|+|||+||+|+++|+.|++.|++|+|+|+.
T Consensus 384 KKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 384 YNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 58999999999999999999999999999985
No 330
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.28 E-value=1.4e-06 Score=67.13 Aligned_cols=38 Identities=45% Similarity=0.654 Sum_probs=34.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~ 42 (184)
..+|+|||+|++|+++|..|++.|.+|+|+|+.+.+++
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG 178 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGG 178 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCc
Confidence 36899999999999999999999999999999876653
No 331
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=98.28 E-value=7.7e-06 Score=60.91 Aligned_cols=67 Identities=16% Similarity=0.141 Sum_probs=49.8
Q ss_pred eeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecC-cEEEeeEEEecCCcch-----------HHH
Q 030042 103 FIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG-TIVKTKFLIGCDGIHS-----------TVA 168 (184)
Q Consensus 103 ~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g-~~~~a~~vI~a~G~~s-----------~~~ 168 (184)
....+.+.+.|.+.++ +++++++++|+++.. .. +.+.+.++ ..++||.||+|+|+.| .++
T Consensus 82 S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~-----~~-~~v~~~~~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la 155 (376)
T TIGR03862 82 EMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQG-----GT-LRFETPDGQSTIEADAVVLALGGASWSQLGSDGAWQQVL 155 (376)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeC-----Cc-EEEEECCCceEEecCEEEEcCCCccccccCCCcHHHHHH
Confidence 3446778888888775 899999999999922 23 67776543 4799999999999864 466
Q ss_pred hhhCCCC
Q 030042 169 WWLGLSE 175 (184)
Q Consensus 169 ~~~~~~~ 175 (184)
+.+|...
T Consensus 156 ~~lGh~i 162 (376)
T TIGR03862 156 DQRGVSV 162 (376)
T ss_pred HHCCCcc
Confidence 7777543
No 332
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=98.28 E-value=1.3e-06 Score=64.61 Aligned_cols=64 Identities=27% Similarity=0.437 Sum_probs=47.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCe--EEEeccCCCCCccce------e-------ee------cccHHHHHHHcCCh
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEP--LVLEKSDGLRGTGAA------I-------SF------APNAWLALDALGVS 63 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v--~vie~~~~~~~~~~~------~-------~~------~~~~~~~~~~~~~~ 63 (184)
..+|+|+|||++||++||+|++.+.++ +++|..++.++--++ . .+ ....+.++.++|+.
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl~ 90 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGLE 90 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCcc
Confidence 468999999999999999999998765 559999887653222 1 11 12467778888887
Q ss_pred HHHHh
Q 030042 64 HKLAS 68 (184)
Q Consensus 64 ~~~~~ 68 (184)
+++..
T Consensus 91 ~e~~~ 95 (491)
T KOG1276|consen 91 DELQP 95 (491)
T ss_pred ceeee
Confidence 66543
No 333
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.25 E-value=2.3e-05 Score=61.24 Aligned_cols=93 Identities=23% Similarity=0.278 Sum_probs=65.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
.+|+|||||.+|+-+|..|+..+.+|+++++.+....
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~------------------------------------------- 388 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA------------------------------------------- 388 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc-------------------------------------------
Confidence 4799999999999999999999999999987643200
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEe---cC--cEEEeeEEEec
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLV---DG--TIVKTKFLIGC 160 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~g--~~~~a~~vI~a 160 (184)
...+.+.+.+ ..+++++.++.++++...+ +.. ..+... ++ +++.+|.|+.|
T Consensus 389 --------------------~~~l~~~l~~-~~gI~i~~~~~v~~i~~~~--g~v-~~v~~~~~~~g~~~~i~~D~v~~~ 444 (517)
T PRK15317 389 --------------------DQVLQDKLRS-LPNVTIITNAQTTEVTGDG--DKV-TGLTYKDRTTGEEHHLELEGVFVQ 444 (517)
T ss_pred --------------------cHHHHHHHhc-CCCcEEEECcEEEEEEcCC--CcE-EEEEEEECCCCcEEEEEcCEEEEe
Confidence 0112222322 2389999999999998664 222 234433 33 36899999999
Q ss_pred CCcch
Q 030042 161 DGIHS 165 (184)
Q Consensus 161 ~G~~s 165 (184)
.|...
T Consensus 445 ~G~~p 449 (517)
T PRK15317 445 IGLVP 449 (517)
T ss_pred ECCcc
Confidence 99855
No 334
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.23 E-value=1.9e-06 Score=68.90 Aligned_cols=38 Identities=39% Similarity=0.585 Sum_probs=34.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~ 42 (184)
..+|+|||+|++|+++|+.|++.|++|+|+|+.+.+++
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG 347 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGG 347 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Confidence 46899999999999999999999999999999887653
No 335
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.19 E-value=2e-06 Score=67.31 Aligned_cols=35 Identities=43% Similarity=0.577 Sum_probs=33.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
.++|++|||+|++|..+|..|+..|.+|+|+|+..
T Consensus 6 ~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 6 MEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred CCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 47999999999999999999998899999999984
No 336
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.16 E-value=6.1e-06 Score=55.83 Aligned_cols=39 Identities=38% Similarity=0.574 Sum_probs=33.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCCCc
Q 030042 5 EKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGT 43 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~~~ 43 (184)
+.||+|||+|.+||++||..++. ..+|.+||..-.+++.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGG 116 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGG 116 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCc
Confidence 46999999999999999999854 5689999998877643
No 337
>PLN03000 amine oxidase
Probab=98.16 E-value=3.9e-06 Score=68.20 Aligned_cols=38 Identities=45% Similarity=0.662 Sum_probs=35.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~ 42 (184)
..+|+|||+|++|+.+|+.|.+.|.+|+|+|+.+..++
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGG 221 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGG 221 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCC
Confidence 47999999999999999999999999999999887754
No 338
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.14 E-value=4.5e-05 Score=58.61 Aligned_cols=33 Identities=36% Similarity=0.498 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
.+|+|||||..|+-+|..|.+.|.+|+++++..
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 479999999999999999999999999999863
No 339
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.14 E-value=2.4e-06 Score=65.12 Aligned_cols=37 Identities=46% Similarity=0.548 Sum_probs=34.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~ 42 (184)
.+|+|||+||+||++|..|+++|+.|+++|+.+.+++
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GG 160 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGG 160 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCce
Confidence 5899999999999999999999999999999887754
No 340
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.13 E-value=4.1e-06 Score=64.84 Aligned_cols=36 Identities=42% Similarity=0.576 Sum_probs=33.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLR 41 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~ 41 (184)
.+|+|||+|++|+.+|..|++.|.+|+|+|+.+.++
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~g 179 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCG 179 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 699999999999999999999999999999987654
No 341
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.11 E-value=3e-06 Score=66.38 Aligned_cols=32 Identities=41% Similarity=0.399 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CCeEEEeccC
Q 030042 7 DVVIIGAGIAGLATALALKRLG-VEPLVLEKSD 38 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g-~~v~vie~~~ 38 (184)
|++|||||.+|+.+|..|++.+ .+|+|+|++.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 8999999999999999999998 6999999975
No 342
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.09 E-value=6.4e-05 Score=55.95 Aligned_cols=32 Identities=34% Similarity=0.548 Sum_probs=29.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCC-eEEEecc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVE-PLVLEKS 37 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~-v~vie~~ 37 (184)
..++|||+|..|+-+|..|.+.|.+ |+|+++.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 4799999999999999999989987 9999875
No 343
>PLN02976 amine oxidase
Probab=98.09 E-value=6.2e-06 Score=69.94 Aligned_cols=38 Identities=39% Similarity=0.648 Sum_probs=34.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~ 42 (184)
..+|+|||+|++|+++|+.|++.|++|+|+|+.+.+++
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGG 730 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGG 730 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCC
Confidence 47899999999999999999999999999999876654
No 344
>PLN02785 Protein HOTHEAD
Probab=98.09 E-value=5.1e-06 Score=65.61 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=31.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
..||++|||||.+|+.+|..|++ +.+|+|||++..
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 46999999999999999999998 689999999863
No 345
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.09 E-value=3.2e-05 Score=57.18 Aligned_cols=133 Identities=16% Similarity=0.149 Sum_probs=68.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC--CeEEEeccCCCCCcc---c-eeeecccHHHHHHHcCChHHHHhcCCCccceEE
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGV--EPLVLEKSDGLRGTG---A-AISFAPNAWLALDALGVSHKLASIYPPVNRISV 78 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (184)
...|+|||||-++.-++..|.+.+. +|.++-|+....... . ...+.|.....+..+ .++.+....
T Consensus 190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l--~~~~R~~~l------- 260 (341)
T PF13434_consen 190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSL--PDEERRELL------- 260 (341)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS---HHHHHHHH-------
T ss_pred CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcC--CHHHHHHHH-------
Confidence 4689999999999999999998865 799998876543211 0 112333333333322 111110000
Q ss_pred EecCCCceeeeecCCCCCCCCCCeeeeHHHH---HHHHHhhC----CCCeeeeCceEEEEeccCCCCCcceEEEEecC--
Q 030042 79 TNLGTGATQETSLTGKFGDGSGPRFIHRKKL---LQTLADEL----PNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG-- 149 (184)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~l~~~~----~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g-- 149 (184)
... .......++...+ .+.+.+.. ..++++.+++|++++..++ .. +.+.+.+.
T Consensus 261 --------~~~-------~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~--~~-~~l~~~~~~~ 322 (341)
T PF13434_consen 261 --------REQ-------RHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGD--GG-VRLTLRHRQT 322 (341)
T ss_dssp --------HHT-------GGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES---SS-EEEEEEETTT
T ss_pred --------HHh-------HhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCC--CE-EEEEEEECCC
Confidence 000 0001112333222 22222211 1578888999999998862 24 77777652
Q ss_pred ---cEEEeeEEEecCCcc
Q 030042 150 ---TIVKTKFLIGCDGIH 164 (184)
Q Consensus 150 ---~~~~a~~vI~a~G~~ 164 (184)
.++.+|.||.|||..
T Consensus 323 ~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 323 GEEETLEVDAVILATGYR 340 (341)
T ss_dssp --EEEEEESEEEE---EE
T ss_pred CCeEEEecCEEEEcCCcc
Confidence 478899999999963
No 346
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.06 E-value=6.3e-05 Score=56.19 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=35.7
Q ss_pred HHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch
Q 030042 108 KLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS 165 (184)
Q Consensus 108 ~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s 165 (184)
.+.+.|.+. +++++.+++++++... .+.+.+|+++.+|.||.|+|...
T Consensus 196 ~~~~~l~~~--gV~v~~~~~v~~i~~~--------~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 196 LVLRLLARR--GIEVHEGAPVTRGPDG--------ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHHC--CCEEEeCCeeEEEcCC--------eEEeCCCCEEecCEEEEccCCCh
Confidence 344445444 8999999999887532 25556788999999999999755
No 347
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.01 E-value=9.2e-05 Score=57.08 Aligned_cols=33 Identities=33% Similarity=0.526 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD 38 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~ 38 (184)
-+|+|||||..|+-+|..|.+.|. +|+++++..
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 479999999999999999999998 799998753
No 348
>PRK13984 putative oxidoreductase; Provisional
Probab=98.00 E-value=1.1e-05 Score=64.29 Aligned_cols=38 Identities=39% Similarity=0.541 Sum_probs=34.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~ 42 (184)
..+|+|||+|++|+++|..|++.|++|+|+|+.+..++
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG 320 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGG 320 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 45899999999999999999999999999999876643
No 349
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.95 E-value=2.7e-05 Score=57.38 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=51.1
Q ss_pred CeeeeHHHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH
Q 030042 101 PRFIHRKKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST 166 (184)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~ 166 (184)
..++++..+...|.+.+. |++++.+++|+++...+ +.. ..|.+.+| ++.||.||+|+|+++.
T Consensus 131 ~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~--~~~-~~v~~~~g-~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 131 DAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRG--EKV-TAIVTPSG-DVQADQVVLAAGAWAG 194 (337)
T ss_pred CceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeC--CEE-EEEEcCCC-EEECCEEEEcCChhhh
Confidence 457888999999988875 89999999999999765 233 56777777 7999999999999875
No 350
>PRK12831 putative oxidoreductase; Provisional
Probab=97.91 E-value=0.00022 Score=55.06 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
.+|+|||||..|+-+|..|.+.|.+|+++++..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 489999999999999999999999999998753
No 351
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.89 E-value=0.00011 Score=54.19 Aligned_cols=99 Identities=24% Similarity=0.359 Sum_probs=70.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGA 85 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
...+|||+|..||-++.--.+.|.+|+++|-.+..++. + +
T Consensus 212 k~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-----m---------------------------------D-- 251 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-----M---------------------------------D-- 251 (506)
T ss_pred ceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-----c---------------------------------C--
Confidence 47899999999999999999999999999975443211 0 0
Q ss_pred eeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEec---C--cEEEeeEEEec
Q 030042 86 TQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVD---G--TIVKTKFLIGC 160 (184)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~---g--~~~~a~~vI~a 160 (184)
.+ -.+..+.++.. .+..+..+++|++.+.+.+ + . +.+...+ + ++++||.+.+|
T Consensus 252 -------------~E-----isk~~qr~L~k-QgikF~l~tkv~~a~~~~d-g-~-v~i~ve~ak~~k~~tle~DvlLVs 309 (506)
T KOG1335|consen 252 -------------GE-----ISKAFQRVLQK-QGIKFKLGTKVTSATRNGD-G-P-VEIEVENAKTGKKETLECDVLLVS 309 (506)
T ss_pred -------------HH-----HHHHHHHHHHh-cCceeEeccEEEEeeccCC-C-c-eEEEEEecCCCceeEEEeeEEEEE
Confidence 00 12233333333 3899999999999999874 2 2 5554433 3 48999999999
Q ss_pred CCcchH
Q 030042 161 DGIHST 166 (184)
Q Consensus 161 ~G~~s~ 166 (184)
.|....
T Consensus 310 iGRrP~ 315 (506)
T KOG1335|consen 310 IGRRPF 315 (506)
T ss_pred ccCccc
Confidence 997653
No 352
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.89 E-value=0.00032 Score=55.47 Aligned_cols=33 Identities=30% Similarity=0.456 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
.+++|||||.+|+-+|..|++.|.+|+++++.+
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 479999999999999999999999999999864
No 353
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.87 E-value=1.7e-05 Score=65.58 Aligned_cols=37 Identities=49% Similarity=0.640 Sum_probs=34.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRG 42 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~ 42 (184)
+.|.|||+||+||++|-+|.+.|+.|+|+||.++.++
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGG 1822 (2142)
T ss_pred cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCc
Confidence 5899999999999999999999999999999988764
No 354
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.82 E-value=3e-05 Score=56.87 Aligned_cols=39 Identities=31% Similarity=0.306 Sum_probs=33.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhC--CCCeEEEeccCCCCCc
Q 030042 5 EKDVVIIGAGIAGLATALALKRL--GVEPLVLEKSDGLRGT 43 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~--g~~v~vie~~~~~~~~ 43 (184)
...|+|||+||+|..+|+.|.++ +.+|.|+|+.+.+.+.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGL 60 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGL 60 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccce
Confidence 35899999999999999998873 6899999999877554
No 355
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.81 E-value=0.00052 Score=57.81 Aligned_cols=99 Identities=13% Similarity=0.080 Sum_probs=67.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGV-EPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG 84 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
.+++|||+|+.|+-+|..|++.|. .|+|+|..+..
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-------------------------------------------- 353 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-------------------------------------------- 353 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch--------------------------------------------
Confidence 479999999999999999999996 47888865321
Q ss_pred ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEE--ecCcEEEeeEEEecCC
Q 030042 85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHL--VDGTIVKTKFLIGCDG 162 (184)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~--~~g~~~~a~~vI~a~G 162 (184)
...+.+.+.+. +++++.++.++.+..++. ... +.+.. .+++++.+|.|+++.|
T Consensus 354 ---------------------~~~l~~~L~~~--GV~i~~~~~v~~i~g~~~-v~~-V~l~~~~g~~~~i~~D~V~va~G 408 (985)
T TIGR01372 354 ---------------------SPEARAEAREL--GIEVLTGHVVAATEGGKR-VSG-VAVARNGGAGQRLEADALAVSGG 408 (985)
T ss_pred ---------------------hHHHHHHHHHc--CCEEEcCCeEEEEecCCc-EEE-EEEEecCCceEEEECCEEEEcCC
Confidence 01133334333 899999999998875431 112 33332 2446899999999999
Q ss_pred cch--HHHhhhCC
Q 030042 163 IHS--TVAWWLGL 173 (184)
Q Consensus 163 ~~s--~~~~~~~~ 173 (184)
... .+.+.++.
T Consensus 409 ~~Pnt~L~~~lg~ 421 (985)
T TIGR01372 409 WTPVVHLFSQRGG 421 (985)
T ss_pred cCchhHHHHhcCC
Confidence 755 35555553
No 356
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.80 E-value=3.4e-05 Score=58.57 Aligned_cols=48 Identities=33% Similarity=0.493 Sum_probs=35.5
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeee
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISF 49 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~ 49 (184)
|. .+|||+|+|.|..-..+|..|++.|.+|+.+|+++..|+..++..+
T Consensus 1 m~-~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l 48 (438)
T PF00996_consen 1 MD-EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNL 48 (438)
T ss_dssp ---SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-H
T ss_pred CC-ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccH
Confidence 44 5799999999999999999999999999999999988887766653
No 357
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=3.2e-05 Score=55.79 Aligned_cols=37 Identities=27% Similarity=0.457 Sum_probs=33.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL 40 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~ 40 (184)
....|-|||||.+|.-+||+++++|++|.++|-++..
T Consensus 2 ~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 2 MQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CCCceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 3568999999999999999999999999999987643
No 358
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.74 E-value=0.00049 Score=54.55 Aligned_cols=59 Identities=19% Similarity=0.143 Sum_probs=42.4
Q ss_pred HHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEE---EecCc--EEEeeEEEecCCcchHH
Q 030042 107 KKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIH---LVDGT--IVKTKFLIGCDGIHSTV 167 (184)
Q Consensus 107 ~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~---~~~g~--~~~a~~vI~a~G~~s~~ 167 (184)
..+...|.+.+. +++++.++.++++..+++ +.. ..+. ..+|+ .+.||.||+|||+...+
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v-~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQD-GAV-VGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCC-CeE-EEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 567777777653 899999999999987531 333 3343 24564 67899999999998754
No 359
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.70 E-value=0.00045 Score=54.99 Aligned_cols=44 Identities=20% Similarity=0.150 Sum_probs=39.1
Q ss_pred CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchHHH
Q 030042 119 NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHSTVA 168 (184)
Q Consensus 119 ~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~~~ 168 (184)
+++++.+.+|+.+...+ -.|.+++|.++.+|.+|+|||+...+-
T Consensus 73 ~i~L~~~~~v~~idr~~------k~V~t~~g~~~~YDkLilATGS~pfi~ 116 (793)
T COG1251 73 GITLYTGEKVIQIDRAN------KVVTTDAGRTVSYDKLIIATGSYPFIL 116 (793)
T ss_pred CcEEEcCCeeEEeccCc------ceEEccCCcEeecceeEEecCcccccc
Confidence 89999999999999886 678899999999999999999876553
No 360
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.69 E-value=0.00062 Score=55.80 Aligned_cols=33 Identities=30% Similarity=0.539 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCC-eEEEeccC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVE-PLVLEKSD 38 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~-v~vie~~~ 38 (184)
.+|+|||||..|+-+|..+.+.|.+ |+++++..
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4799999999999999999999997 99998754
No 361
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=97.67 E-value=5.5e-05 Score=59.07 Aligned_cols=37 Identities=27% Similarity=0.353 Sum_probs=32.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCCeEEEeccCCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRL-GVEPLVLEKSDGL 40 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~-g~~v~vie~~~~~ 40 (184)
..||.+|||||-+|+.+|..|++. .++|+++|++..+
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 469999999999999999999976 6799999997644
No 362
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.64 E-value=0.0005 Score=54.74 Aligned_cols=107 Identities=26% Similarity=0.360 Sum_probs=75.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCCce
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTGAT 86 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (184)
..+|||||.-|+-+|..|.+.|.++.|++-.+..- + +++
T Consensus 147 ~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lM-------------e--rQL-------------------------- 185 (793)
T COG1251 147 KAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM-------------E--RQL-------------------------- 185 (793)
T ss_pred CcEEEccchhhhHHHHHHHhCCCceEEEeecchHH-------------H--Hhh--------------------------
Confidence 46999999999999999999999999998654320 0 000
Q ss_pred eeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcch-
Q 030042 87 QETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHS- 165 (184)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s- 165 (184)
. -....+++...+.. +++++.+...+.+...+ .. ..+.++||..+.|+.||.|+|...
T Consensus 186 ----------D------~~ag~lL~~~le~~-Gi~~~l~~~t~ei~g~~---~~-~~vr~~DG~~i~ad~VV~a~GIrPn 244 (793)
T COG1251 186 ----------D------RTAGRLLRRKLEDL-GIKVLLEKNTEEIVGED---KV-EGVRFADGTEIPADLVVMAVGIRPN 244 (793)
T ss_pred ----------h------hHHHHHHHHHHHhh-cceeecccchhhhhcCc---ce-eeEeecCCCcccceeEEEecccccc
Confidence 0 00134444444443 88888877766655532 44 789999999999999999999755
Q ss_pred -HHHhhhCCCC
Q 030042 166 -TVAWWLGLSE 175 (184)
Q Consensus 166 -~~~~~~~~~~ 175 (184)
.+++..++..
T Consensus 245 ~ela~~aGlav 255 (793)
T COG1251 245 DELAKEAGLAV 255 (793)
T ss_pred cHhHHhcCcCc
Confidence 4677666543
No 363
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=97.61 E-value=6e-05 Score=52.70 Aligned_cols=32 Identities=34% Similarity=0.552 Sum_probs=26.5
Q ss_pred EEEECCCHHHHHHHHHHHhCC--CCeEEEeccCC
Q 030042 8 VVIIGAGIAGLATALALKRLG--VEPLVLEKSDG 39 (184)
Q Consensus 8 v~IiGgG~~Gl~~A~~l~~~g--~~v~vie~~~~ 39 (184)
.+|||||++|.++|-+|+++. .+|+++-..+-
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 689999999999999999864 47888876543
No 364
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.61 E-value=0.0015 Score=50.75 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=26.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEecc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGV-EPLVLEKS 37 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~ 37 (184)
..|+|||||..|+-+|..+.+.|. +|++++..
T Consensus 282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~ 314 (471)
T PRK12810 282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM 314 (471)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence 479999999999999998888886 67766654
No 365
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.60 E-value=0.00023 Score=53.15 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=47.2
Q ss_pred HHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCc--chHHHhhhCCC
Q 030042 108 KLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGI--HSTVAWWLGLS 174 (184)
Q Consensus 108 ~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~--~s~~~~~~~~~ 174 (184)
.|.+|-.+..+ |+.+.-|..|.++-... .. +.++.+||.++..|.||+|+|- ++.+.+..++.
T Consensus 394 yls~wt~ekir~~GV~V~pna~v~sv~~~~---~n-l~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLe 460 (659)
T KOG1346|consen 394 YLSQWTIEKIRKGGVDVRPNAKVESVRKCC---KN-LVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLE 460 (659)
T ss_pred HHHHHHHHHHHhcCceeccchhhhhhhhhc---cc-eEEEecCCCeeeeeeEEEEecCCCchhhcccccce
Confidence 34444444443 88999999999887765 33 8899999999999999999995 55666666543
No 366
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=97.57 E-value=0.00022 Score=53.27 Aligned_cols=125 Identities=18% Similarity=0.176 Sum_probs=75.3
Q ss_pred cccEEEECCCHHHHHHHHHHHh--CCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecC
Q 030042 5 EKDVVIIGAGIAGLATALALKR--LGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLG 82 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~--~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
+...+|||+|.+..+++..... .+.+|++|...+... ...+.-...+|+..
T Consensus 178 hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelP---------------------------YmRPPLSKELW~~~ 230 (659)
T KOG1346|consen 178 HVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELP---------------------------YMRPPLSKELWWYG 230 (659)
T ss_pred cCceeEEcCCchhhhcccccccCCCCceEEeeccCccCc---------------------------ccCCCcchhceecC
Confidence 4678999999877666554432 356788886544320 11111112222222
Q ss_pred CCce-eeeecCCCC------CCCCCCeeeeHHHHHHHHHhhCC-CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEe
Q 030042 83 TGAT-QETSLTGKF------GDGSGPRFIHRKKLLQTLADELP-NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKT 154 (184)
Q Consensus 83 ~~~~-~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~-~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a 154 (184)
+... ..++|.... ..-++.+++++++|-+. .. |+-++.+.+|+.+...+ -.|..+||.+|.+
T Consensus 231 dpn~~k~lrfkqwsGkeRsiffepd~FfvspeDLp~~----~nGGvAvl~G~kvvkid~~d------~~V~LnDG~~I~Y 300 (659)
T KOG1346|consen 231 DPNSAKKLRFKQWSGKERSIFFEPDGFFVSPEDLPKA----VNGGVAVLRGRKVVKIDEED------KKVILNDGTTIGY 300 (659)
T ss_pred CCChhhheeecccCCccceeEecCCcceeChhHCccc----ccCceEEEeccceEEeeccc------CeEEecCCcEeeh
Confidence 2222 333333211 01124457777776433 22 67889999999988776 5588899999999
Q ss_pred eEEEecCCcchH
Q 030042 155 KFLIGCDGIHST 166 (184)
Q Consensus 155 ~~vI~a~G~~s~ 166 (184)
|.+++|||....
T Consensus 301 dkcLIATG~~Pk 312 (659)
T KOG1346|consen 301 DKCLIATGVRPK 312 (659)
T ss_pred hheeeecCcCcc
Confidence 999999998654
No 367
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.54 E-value=0.00015 Score=52.41 Aligned_cols=39 Identities=33% Similarity=0.465 Sum_probs=35.0
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
|++....|.|||+|..|...|..+++.|++|+++|+.+.
T Consensus 1 ~~~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 1 MSDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred CCCCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 666556899999999999999999999999999998764
No 368
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.50 E-value=0.0021 Score=53.85 Aligned_cols=33 Identities=30% Similarity=0.495 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
.+|+|||||.+|+-+|..+.+.|.+|+++.+..
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 479999999999999999999999999998753
No 369
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.50 E-value=0.0018 Score=52.34 Aligned_cols=33 Identities=33% Similarity=0.502 Sum_probs=29.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD 38 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~ 38 (184)
.+|+|||||..|+-+|..|.+.|. +|+++.+..
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 479999999999999999999987 599998754
No 370
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.46 E-value=0.0023 Score=51.78 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=28.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD 38 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~ 38 (184)
.+|+|||||..|+-+|..+.+.|. +|+++.+.+
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 479999999999999999999987 699888754
No 371
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.44 E-value=0.0028 Score=53.07 Aligned_cols=33 Identities=30% Similarity=0.459 Sum_probs=28.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhC-C-CCeEEEeccC
Q 030042 6 KDVVIIGAGIAGLATALALKRL-G-VEPLVLEKSD 38 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~-g-~~v~vie~~~ 38 (184)
.+|+|||||..|+-+|..+.+. | .+|+++.+..
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 4799999999999999988877 5 3799999864
No 372
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.44 E-value=0.0003 Score=51.57 Aligned_cols=38 Identities=32% Similarity=0.352 Sum_probs=34.1
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
|.|...+|+|||+|..|..+|..|++.|.+|+++.|+.
T Consensus 1 ~~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 1 MDSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CCCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 55566789999999999999999999999999999864
No 373
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.43 E-value=0.00087 Score=50.24 Aligned_cols=53 Identities=13% Similarity=0.238 Sum_probs=39.9
Q ss_pred HHHHHHHHhhCC--CCeeeeCceEEEEeccCCCCCcceEEEEecC--cEEEeeEEEecCCcch
Q 030042 107 KKLLQTLADELP--NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG--TIVKTKFLIGCDGIHS 165 (184)
Q Consensus 107 ~~l~~~l~~~~~--~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g--~~~~a~~vI~a~G~~s 165 (184)
.++..+..+.+. ++.+..++.|.+++..+ ..+++.+| ++|-+-.+|-|||...
T Consensus 273 krl~~yae~~f~~~~I~~~~~t~Vk~V~~~~------I~~~~~~g~~~~iPYG~lVWatG~~~ 329 (491)
T KOG2495|consen 273 KRLVEYAENQFVRDGIDLDTGTMVKKVTEKT------IHAKTKDGEIEEIPYGLLVWATGNGP 329 (491)
T ss_pred HHHHHHHHHHhhhccceeecccEEEeecCcE------EEEEcCCCceeeecceEEEecCCCCC
Confidence 345555555554 78999999999888765 77777777 4677899999999754
No 374
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.43 E-value=0.0002 Score=48.12 Aligned_cols=33 Identities=33% Similarity=0.493 Sum_probs=28.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
.|.|||+|..|...|..+++.|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 489999999999999999999999999999653
No 375
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.42 E-value=0.00019 Score=47.14 Aligned_cols=32 Identities=31% Similarity=0.397 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
+|.|||||..|.++|..|++.|.+|.++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 48999999999999999999999999999864
No 376
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.41 E-value=0.0028 Score=49.12 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=29.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD 38 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~ 38 (184)
.+++|||+|..|+-+|..+.+.|. +|+|+++.+
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 479999999999999999999986 699999864
No 377
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.36 E-value=0.0011 Score=51.19 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
.+|+|||+|.+|+-.|..|++.+.+|+++.+..
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 579999999999999999999999999998854
No 378
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.35 E-value=0.00093 Score=52.45 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=28.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
..+|+|||+|.+|.=.|..|++...+|.+.-|..
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 3589999999999999999999888888877754
No 379
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.32 E-value=0.0019 Score=48.89 Aligned_cols=41 Identities=17% Similarity=0.357 Sum_probs=34.6
Q ss_pred CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH
Q 030042 119 NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST 166 (184)
Q Consensus 119 ~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~ 166 (184)
++.++.+++|+++.... -.+.+.+| .+.+|.+|+|+|+...
T Consensus 67 ~i~~~~~~~v~~id~~~------~~v~~~~g-~~~yd~LvlatGa~~~ 107 (415)
T COG0446 67 GIDVRTGTEVTSIDPEN------KVVLLDDG-EIEYDYLVLATGARPR 107 (415)
T ss_pred CCEEeeCCEEEEecCCC------CEEEECCC-cccccEEEEcCCCccc
Confidence 78899999999998875 55777777 7889999999998754
No 380
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.31 E-value=0.0034 Score=47.20 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=32.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
++..|+|+|+|.+|.++...|-...++|+|+.+++.
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRny 89 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNY 89 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccc
Confidence 456899999999999999999888999999998754
No 381
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.30 E-value=0.00049 Score=44.75 Aligned_cols=31 Identities=32% Similarity=0.485 Sum_probs=29.3
Q ss_pred EEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 8 VVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 8 v~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
|+|+|+|..|+..|+.|++.|.+|.++.|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999999865
No 382
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.30 E-value=0.00047 Score=53.11 Aligned_cols=38 Identities=37% Similarity=0.695 Sum_probs=34.0
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
|.++...++|+|+|.+|+.+|..|+++|.+|+++|+..
T Consensus 1 ~~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 1 MELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 54556789999999999999999999999999999864
No 383
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.19 E-value=0.00066 Score=47.30 Aligned_cols=33 Identities=27% Similarity=0.539 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
+++|||+|..|..+|..|.+.|.+|+++|+++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 689999999999999999999999999999764
No 384
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=97.18 E-value=0.00062 Score=43.49 Aligned_cols=34 Identities=38% Similarity=0.488 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD 38 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~ 38 (184)
+..|+|+|+|..|..+|..|++.|. +++++|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 5689999999999999999999999 699999865
No 385
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.17 E-value=0.00063 Score=52.87 Aligned_cols=33 Identities=39% Similarity=0.598 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
.+|+|||+|.+|+.+|..|+++|.+|+++|+.+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 479999999999999999999999999999654
No 386
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.15 E-value=0.00062 Score=49.78 Aligned_cols=33 Identities=36% Similarity=0.518 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
+|.|||+|..|..+|..|+++|.+|+++|+.+.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 699999999999999999999999999998753
No 387
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.12 E-value=0.0009 Score=48.32 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=32.5
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
|++ .+|.|||+|..|...|..+++.|.+|+++|.++.
T Consensus 1 ~~~--~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 1 MGI--QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred CCc--cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 553 3799999999999999999999999999998654
No 388
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.10 E-value=0.00093 Score=48.37 Aligned_cols=33 Identities=30% Similarity=0.472 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
..|.|||+|..|...|..|++.|.+|+++|+++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 479999999999999999999999999999864
No 389
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.10 E-value=0.00091 Score=48.56 Aligned_cols=34 Identities=32% Similarity=0.316 Sum_probs=31.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
...|.|||+|..|...|..|++.|.+|+++|+++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4579999999999999999999999999999864
No 390
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.09 E-value=0.00072 Score=52.24 Aligned_cols=34 Identities=35% Similarity=0.457 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCC
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDGL 40 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~ 40 (184)
.|+|||.|++|+++|..|.+.|.+|.++|+...+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999999999999999987643
No 391
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=97.09 E-value=0.0011 Score=48.45 Aligned_cols=32 Identities=28% Similarity=0.320 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
+|+|+|+|..|...|..|++.|.+|+++.|..
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 69999999999999999999999999999853
No 392
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.08 E-value=0.01 Score=50.01 Aligned_cols=33 Identities=33% Similarity=0.512 Sum_probs=28.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhC-CC-CeEEEeccC
Q 030042 6 KDVVIIGAGIAGLATALALKRL-GV-EPLVLEKSD 38 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~-g~-~v~vie~~~ 38 (184)
.+|+|||||..|+-+|..+.+. |. +|+++.+..
T Consensus 667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 4799999999999999988876 76 799999864
No 393
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=97.03 E-value=0.0011 Score=50.27 Aligned_cols=44 Identities=16% Similarity=0.297 Sum_probs=36.1
Q ss_pred CCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCcchH
Q 030042 119 NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGIHST 166 (184)
Q Consensus 119 ~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~~s~ 166 (184)
+.+|+++++|++|+..+ +. +.+.+.+|+++.||.||.|+.....
T Consensus 223 g~~i~l~~~V~~I~~~~---~~-v~v~~~~g~~~~ad~VI~a~p~~~l 266 (450)
T PF01593_consen 223 GGEIRLNTPVTRIERED---GG-VTVTTEDGETIEADAVISAVPPSVL 266 (450)
T ss_dssp GGGEESSEEEEEEEEES---SE-EEEEETTSSEEEESEEEE-S-HHHH
T ss_pred CceeecCCcceeccccc---cc-cccccccceEEecceeeecCchhhh
Confidence 45899999999999986 45 8899999999999999999976543
No 394
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.02 E-value=0.0012 Score=45.06 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=31.2
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEecc
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKS 37 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~ 37 (184)
+...|+|||+|..|...|..|++.|+ +++++|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 35789999999999999999999999 69999987
No 395
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.01 E-value=0.00071 Score=45.67 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=27.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
.|.|||.|..|+.+|..|++.|++|+.+|.++.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 689999999999999999999999999998763
No 396
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.98 E-value=0.0018 Score=47.57 Aligned_cols=39 Identities=18% Similarity=0.381 Sum_probs=33.7
Q ss_pred CCCc-cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCC
Q 030042 1 MAMV-EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSDG 39 (184)
Q Consensus 1 m~~~-~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~ 39 (184)
|+|. ...|.|||+|..|..+|+.++..|+ +++++|.++.
T Consensus 1 ~~~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 1 MTMIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 6664 4689999999999999999999886 8999998664
No 397
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.97 E-value=0.0043 Score=47.39 Aligned_cols=44 Identities=9% Similarity=0.157 Sum_probs=33.0
Q ss_pred CCeeeeCceEEEEeccCCCCCcceEEEEecC--cEEEeeEEEecCCcch
Q 030042 119 NGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG--TIVKTKFLIGCDGIHS 165 (184)
Q Consensus 119 ~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g--~~~~a~~vI~a~G~~s 165 (184)
+++++.+++|++++..+ +.. ..+.+.++ ..+.+|.||+|+|...
T Consensus 273 Gv~I~~g~~V~~v~~~~--~~V-~~v~~~~g~~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 273 GGRIMPGDEVLGAEFEG--GRV-TAVWTRNHGDIPLRARHFVLATGSFF 318 (422)
T ss_pred CCEEEeCCEEEEEEEeC--CEE-EEEEeeCCceEEEECCEEEEeCCCcc
Confidence 88999999999998765 222 33445555 3689999999999753
No 398
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.035 Score=40.60 Aligned_cols=95 Identities=20% Similarity=0.282 Sum_probs=67.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeecccHHHHHHHcCChHHHHhcCCCccceEEEecCCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFAPNAWLALDALGVSHKLASIYPPVNRISVTNLGTG 84 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
..+|+|||||-+++--|+.|++.+.+|+++=|++.+..
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra------------------------------------------ 180 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA------------------------------------------ 180 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc------------------------------------------
Confidence 34999999999999999999999989999998765311
Q ss_pred ceeeeecCCCCCCCCCCeeeeHHHHHHHHHhhCCCCeeeeCceEEEEeccCCCCCcceEEEEecC--cEEEeeEEEecCC
Q 030042 85 ATQETSLTGKFGDGSGPRFIHRKKLLQTLADELPNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDG--TIVKTKFLIGCDG 162 (184)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g--~~~~a~~vI~a~G 162 (184)
...+.+.+.+.. ++.+++++.+..+.-++ ... +.++...+ ..+.++.|.++.|
T Consensus 181 ---------------------~~~~~~~l~~~~-~i~~~~~~~i~ei~G~~--v~~-v~l~~~~~~~~~~~~~gvf~~iG 235 (305)
T COG0492 181 ---------------------EEILVERLKKNV-KIEVLTNTVVKEILGDD--VEG-VVLKNVKGEEKELPVDGVFIAIG 235 (305)
T ss_pred ---------------------CHHHHHHHHhcC-CeEEEeCCceeEEecCc--cce-EEEEecCCceEEEEeceEEEecC
Confidence 123334444332 68889999998887653 122 44443323 3678999999999
Q ss_pred cchH
Q 030042 163 IHST 166 (184)
Q Consensus 163 ~~s~ 166 (184)
....
T Consensus 236 ~~p~ 239 (305)
T COG0492 236 HLPN 239 (305)
T ss_pred CCCc
Confidence 7553
No 399
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.94 E-value=0.0015 Score=47.38 Aligned_cols=34 Identities=24% Similarity=0.480 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
..|.|||+|..|...|..|++.|.+|+++|+++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 4699999999999999999999999999998653
No 400
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.93 E-value=0.016 Score=49.20 Aligned_cols=32 Identities=34% Similarity=0.467 Sum_probs=27.6
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCC-eEEEecc
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVE-PLVLEKS 37 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~-v~vie~~ 37 (184)
.+|+|||||.+|+-+|..+.+.|.+ |+++.+.
T Consensus 572 k~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr 604 (1006)
T PRK12775 572 KSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR 604 (1006)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence 4899999999999999999999985 7777654
No 401
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.92 E-value=0.0015 Score=47.39 Aligned_cols=33 Identities=21% Similarity=0.464 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
.|.|||+|..|...|..|++.|++|+++|+++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 689999999999999999999999999998753
No 402
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.92 E-value=0.0017 Score=47.64 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=31.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
..|.|||+|..|...|..++..|++|+++|..+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998753
No 403
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.91 E-value=0.0019 Score=47.31 Aligned_cols=37 Identities=27% Similarity=0.473 Sum_probs=32.5
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
|+. ..+|.|||+|..|..+|..|++.|++|+++|++.
T Consensus 1 ~~~-~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 1 MNP-IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred CCC-ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 553 3579999999999999999999999999999754
No 404
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=96.89 E-value=0.002 Score=45.94 Aligned_cols=35 Identities=26% Similarity=0.453 Sum_probs=31.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD 38 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~ 38 (184)
....|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 35789999999999999999999996 799999865
No 405
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.86 E-value=0.0017 Score=49.54 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=33.0
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
|++ ..|.|||.|..|+.+|..|++.|++|+++|+++.
T Consensus 1 m~~--~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 1 MSF--ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred CCc--cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 653 5799999999999999999999999999998653
No 406
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.86 E-value=0.0014 Score=39.83 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=30.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKS 37 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~ 37 (184)
+...|+|||||..|..-+..|.+.|.+|+|+.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 3568999999999999999999999999999986
No 407
>PRK13984 putative oxidoreductase; Provisional
Probab=96.84 E-value=0.017 Score=46.41 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=21.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCC
Q 030042 6 KDVVIIGAGIAGLATALALKRLG 28 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g 28 (184)
.+|+|||||..|+-+|..|++.+
T Consensus 419 k~VvVIGGG~~g~e~A~~l~r~~ 441 (604)
T PRK13984 419 RSLVVIGGGNVAMDIARSMARLQ 441 (604)
T ss_pred CcEEEECCchHHHHHHHHHHhcc
Confidence 48999999999999999998875
No 408
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=96.81 E-value=0.0022 Score=50.05 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=33.1
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
|+|. ..|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus 1 ~~~i-~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 1 MTMI-MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred CCCc-CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5553 3799999999999999999999999999998643
No 409
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.002 Score=48.16 Aligned_cols=47 Identities=34% Similarity=0.410 Sum_probs=42.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceeeec
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAISFA 50 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~ 50 (184)
.+||++|||-|..=..+|...++.|.+|+=+|+++..|+...+..++
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms 53 (547)
T KOG4405|consen 7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS 53 (547)
T ss_pred hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence 46999999999999999999999999999999999998887776665
No 410
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=96.78 E-value=0.0025 Score=46.34 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
..|.|||+|..|...|..|++.|.+|+++|+++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 4799999999999999999999999999998653
No 411
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.78 E-value=0.0026 Score=43.67 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
...++|||||.+|...+..|.+.|.+|+|+++..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3589999999999999999999999999998753
No 412
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.76 E-value=0.0045 Score=39.55 Aligned_cols=35 Identities=37% Similarity=0.485 Sum_probs=31.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCC-eEEEeccC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVE-PLVLEKSD 38 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~-v~vie~~~ 38 (184)
+...++|||+|-+|..+++.|...|.+ ++|+.|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 346899999999999999999999996 99999863
No 413
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.75 E-value=0.0027 Score=46.91 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=32.4
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
|+. ...|.|||+|..|...|..|++.|.+|+++++..
T Consensus 1 ~~~-~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 1 MHH-GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCC-CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 553 3479999999999999999999999999999854
No 414
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.75 E-value=0.0025 Score=46.46 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
+|+|||+|..|..+|..|++.|.+|+++++..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 58999999999999999999999999999853
No 415
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.74 E-value=0.0029 Score=39.15 Aligned_cols=32 Identities=38% Similarity=0.542 Sum_probs=28.3
Q ss_pred EEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 8 VVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 8 v~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
|+|+|.|..|..++..|.+.+.+|+++|+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 68999999999999999998879999999753
No 416
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=96.73 E-value=0.003 Score=46.89 Aligned_cols=31 Identities=19% Similarity=0.372 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKS 37 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~ 37 (184)
+|.|||+|..|...|..|++.|.+|.++++.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 6999999999999999999999999999985
No 417
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.73 E-value=0.0029 Score=41.56 Aligned_cols=32 Identities=38% Similarity=0.394 Sum_probs=29.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEec
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEK 36 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~ 36 (184)
...|+|||||..|...|..|.+.|.+|+|+++
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 45899999999999999999999999999964
No 418
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0038 Score=46.10 Aligned_cols=44 Identities=30% Similarity=0.390 Sum_probs=38.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceee
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAIS 48 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~ 48 (184)
.|||+|.|-|+.-+.++..|+..|.+|+.||+++..|...++..
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~aslt 49 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLT 49 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCcccccee
Confidence 59999999999999999999999999999999998776655443
No 419
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=96.71 E-value=0.0029 Score=46.16 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=28.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEec
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEK 36 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~ 36 (184)
+|+|||+|..|..+|..|++.|.+|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 589999999999999999999999999998
No 420
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.69 E-value=0.0031 Score=43.21 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=30.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKS 37 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~ 37 (184)
....++|||||-.|...|..|.+.|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3468999999999999999999999999999864
No 421
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.69 E-value=0.0034 Score=44.23 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSDG 39 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~ 39 (184)
...|+|||+|..|..+|..|++.|. +++++|.+.-
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 5789999999999999999999998 7999998753
No 422
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.69 E-value=0.0037 Score=43.19 Aligned_cols=35 Identities=34% Similarity=0.347 Sum_probs=31.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD 38 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~ 38 (184)
+...|+|||+|..|..+|..|++.|. +++++|.+.
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 35789999999999999999999999 599999874
No 423
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.67 E-value=0.0032 Score=46.65 Aligned_cols=35 Identities=40% Similarity=0.567 Sum_probs=31.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD 38 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~ 38 (184)
+...|+|||+|..|..+|..|++.|. +++|+|++.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 35689999999999999999999998 799999875
No 424
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.66 E-value=0.0038 Score=42.78 Aligned_cols=35 Identities=34% Similarity=0.528 Sum_probs=31.8
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD 38 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~ 38 (184)
.+..|+|||.|..|..+|..|++.|. +++++|.+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 35789999999999999999999998 799999874
No 425
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.61 E-value=0.004 Score=44.01 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=31.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD 38 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~ 38 (184)
+.+|+|||.|..|..+|..|++.|+ +++++|.+.
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 5789999999999999999999998 799999864
No 426
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.61 E-value=0.0048 Score=47.55 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=34.1
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
|.+....++|+|.|.+|+++|..|+++|.+|++.|..+.
T Consensus 1 ~~~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 1 MTFQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 555556899999999999999999999999999997554
No 427
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.59 E-value=0.0047 Score=41.29 Aligned_cols=32 Identities=34% Similarity=0.351 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042 7 DVVIIGAGIAGLATALALKRLGV-EPLVLEKSD 38 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~ 38 (184)
.|+|||+|..|...|..|++.|. +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 48999999999999999999999 599999875
No 428
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.57 E-value=0.0045 Score=45.89 Aligned_cols=35 Identities=43% Similarity=0.582 Sum_probs=31.9
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD 38 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~ 38 (184)
+...|+|||+|-.|..+|..|++.|. +++++|.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 35789999999999999999999999 899999864
No 429
>PRK08328 hypothetical protein; Provisional
Probab=96.56 E-value=0.0045 Score=43.37 Aligned_cols=35 Identities=26% Similarity=0.423 Sum_probs=31.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSDG 39 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~ 39 (184)
...|+|||+|-.|..+|..|++.|. +++++|.+..
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v 62 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP 62 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 5689999999999999999999998 6999987653
No 430
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.55 E-value=0.0045 Score=43.28 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=31.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD 38 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~ 38 (184)
+..|+|||+|..|..+|..|++.|. +++++|.+.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 5789999999999999999999998 799998765
No 431
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.55 E-value=0.039 Score=44.67 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=28.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD 38 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~ 38 (184)
.+++|||+|..++-+|..+.+.|. +|+++.+..
T Consensus 452 k~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~ 485 (639)
T PRK12809 452 KRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD 485 (639)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 479999999999999998888885 799998754
No 432
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=96.51 E-value=0.0048 Score=48.32 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=31.8
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
...|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 35799999999999999999999999999998754
No 433
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.49 E-value=0.0056 Score=39.46 Aligned_cols=33 Identities=30% Similarity=0.423 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCC
Q 030042 7 DVVIIGAGIAGLATALALKRLGV-EPLVLEKSDG 39 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~ 39 (184)
.|+|||+|-.|..+|..|++.|. +++++|.+.-
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v 34 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 48999999999999999999998 6999998653
No 434
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.47 E-value=0.0047 Score=46.41 Aligned_cols=34 Identities=32% Similarity=0.467 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
..+++|||+|.+|+.+|..|...|.+|.++|++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 3579999999999999999999999999999864
No 435
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.46 E-value=0.0054 Score=47.30 Aligned_cols=38 Identities=26% Similarity=0.389 Sum_probs=32.9
Q ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 1 MAMVEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 1 m~~~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
|......++|+|+|.+|+++|..|++.|.+|++.|+..
T Consensus 1 ~~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 1 TEYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 44444579999999999999999999999999999754
No 436
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=96.46 E-value=0.0041 Score=39.76 Aligned_cols=32 Identities=31% Similarity=0.334 Sum_probs=27.9
Q ss_pred EEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 8 VVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 8 v~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
++|+|+|+.+.+++..++..|++|+|+|.++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999998865
No 437
>PRK04148 hypothetical protein; Provisional
Probab=96.44 E-value=0.0037 Score=39.67 Aligned_cols=33 Identities=27% Similarity=0.436 Sum_probs=29.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
..+++||.| .|..+|..|++.|.+|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 469999999 899899999999999999998753
No 438
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.43 E-value=0.0055 Score=40.49 Aligned_cols=33 Identities=33% Similarity=0.405 Sum_probs=28.8
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
.+|.+||-|..|...|..|.+.|++|.++|+.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 479999999999999999999999999999864
No 439
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.41 E-value=0.0057 Score=45.16 Aligned_cols=32 Identities=28% Similarity=0.409 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
++.|||+|..|.++|..|++.|.+|.+++|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 58999999999999999999999999999854
No 440
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.41 E-value=0.02 Score=42.97 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=33.0
Q ss_pred CCeeeeCceEEEEeccCCCCCcceEEEEe---cC--cEEEeeEEEecCCcch
Q 030042 119 NGTIHFSSKIAAIDSQTHDGSSPVFIHLV---DG--TIVKTKFLIGCDGIHS 165 (184)
Q Consensus 119 ~~~i~~~~~v~~~~~~~~~~~~~~~v~~~---~g--~~~~a~~vI~a~G~~s 165 (184)
+++++-+++|.+++..+ ++.+.+... .+ ++++.|.||.|||...
T Consensus 292 ~v~l~~~~ev~~~~~~G---~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~ 340 (436)
T COG3486 292 DVRLLSLSEVQSVEPAG---DGRYRLTLRHHETGELETVETDAVILATGYRR 340 (436)
T ss_pred CeeeccccceeeeecCC---CceEEEEEeeccCCCceEEEeeEEEEeccccc
Confidence 57889999999999886 332444442 22 5899999999999874
No 441
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.41 E-value=0.0062 Score=42.63 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=31.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD 38 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~ 38 (184)
+..|+|||.|-.|..+|..|++.|. +++++|.+.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 5789999999999999999999998 799999765
No 442
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.40 E-value=0.0057 Score=46.46 Aligned_cols=34 Identities=29% Similarity=0.308 Sum_probs=30.9
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
..|+|+|.|+.|+.+|..++..|.+|+++|.++.
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 4799999999999999999999999999998653
No 443
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=96.40 E-value=0.0069 Score=41.41 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=31.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSDG 39 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~ 39 (184)
+..|+|||+|..|..+|..|++.|. +++++|.+.-
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v 54 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV 54 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence 5789999999999999999999999 5999997643
No 444
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.0019 Score=48.05 Aligned_cols=45 Identities=27% Similarity=0.420 Sum_probs=40.3
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCCCCCccceee
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDGLRGTGAAIS 48 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~ 48 (184)
++|||+|+|-|..-+.++..|+..|.+|+.+||++..|+.+.+..
T Consensus 3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~saslt 47 (440)
T KOG1439|consen 3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLT 47 (440)
T ss_pred CceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcccccee
Confidence 469999999999999999999999999999999998877666555
No 445
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.36 E-value=0.0064 Score=40.41 Aligned_cols=34 Identities=35% Similarity=0.457 Sum_probs=29.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
...|+|+|+|.+|..+|..|...|.+++++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 3689999999999999999999999999999864
No 446
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.34 E-value=0.0054 Score=47.81 Aligned_cols=34 Identities=35% Similarity=0.484 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
..+|+|+|+|++|+.++..+...|.+|.++|.++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3589999999999999999999999999999875
No 447
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.34 E-value=0.0079 Score=41.08 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=31.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD 38 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~ 38 (184)
++..|+|||+|..|..+|..|++.|. +++++|.+.
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 35789999999999999999999999 599999764
No 448
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.32 E-value=0.0074 Score=44.20 Aligned_cols=32 Identities=38% Similarity=0.568 Sum_probs=29.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042 7 DVVIIGAGIAGLATALALKRLGV--EPLVLEKSD 38 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~ 38 (184)
+|.|||+|..|.++|+.|++.|. ++.++|++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 59999999999999999999984 799999865
No 449
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.32 E-value=0.01 Score=38.28 Aligned_cols=32 Identities=38% Similarity=0.598 Sum_probs=28.8
Q ss_pred cEEEECC-CHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042 7 DVVIIGA-GIAGLATALALKRLGV--EPLVLEKSD 38 (184)
Q Consensus 7 dv~IiGg-G~~Gl~~A~~l~~~g~--~v~vie~~~ 38 (184)
+|.|||+ |..|..+|+.|...++ ++.++|...
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 6999999 9999999999998876 699999874
No 450
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=96.30 E-value=0.0069 Score=44.59 Aligned_cols=32 Identities=28% Similarity=0.466 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
+|.|||+|..|...|..|++.|.+|.++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999864
No 451
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=96.29 E-value=0.007 Score=44.29 Aligned_cols=38 Identities=34% Similarity=0.528 Sum_probs=31.8
Q ss_pred CCCcc-ccEEEECCCHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042 1 MAMVE-KDVVIIGAGIAGLATALALKRLGV--EPLVLEKSD 38 (184)
Q Consensus 1 m~~~~-~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~ 38 (184)
|+.+. .+|.|||.|..|.++|..|.+.|. +|.++++++
T Consensus 1 ~~~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 1 MSAPLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred CCccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 55443 479999999999999999999885 789999864
No 452
>PRK08223 hypothetical protein; Validated
Probab=96.29 E-value=0.0084 Score=43.18 Aligned_cols=35 Identities=29% Similarity=0.330 Sum_probs=31.7
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD 38 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~ 38 (184)
++..|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 35789999999999999999999999 799999865
No 453
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=96.28 E-value=0.0095 Score=43.58 Aligned_cols=32 Identities=28% Similarity=0.546 Sum_probs=29.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042 7 DVVIIGAGIAGLATALALKRLGV-EPLVLEKSD 38 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~ 38 (184)
.|.|||+|..|..+|+.|+..|. +|+++|...
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 69999999999999999999876 899999844
No 454
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.24 E-value=0.01 Score=43.52 Aligned_cols=35 Identities=29% Similarity=0.319 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
..+|.|||+|..|.++|..|++.|++|.++++...
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 34799999999999999999999999999998653
No 455
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.22 E-value=0.0065 Score=46.36 Aligned_cols=33 Identities=30% Similarity=0.444 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
+|.|||.|..|+.+|..|++.|++|+++|+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 589999999999999999999999999998653
No 456
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.21 E-value=0.012 Score=43.18 Aligned_cols=35 Identities=29% Similarity=0.527 Sum_probs=31.0
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGV--EPLVLEKSD 38 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~ 38 (184)
...+|.|||+|-.|.++|+.|...++ +++++|.+.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 45699999999999999999998887 799999854
No 457
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.17 E-value=0.0096 Score=44.72 Aligned_cols=33 Identities=30% Similarity=0.434 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCC-CCeEEEeccC
Q 030042 6 KDVVIIGAGIAGLATALALKRLG-VEPLVLEKSD 38 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g-~~v~vie~~~ 38 (184)
.+++|||+|-.|..+|..|++++ .+|++.+|..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 48999999999999999999998 7999999974
No 458
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=96.16 E-value=0.0079 Score=47.06 Aligned_cols=34 Identities=26% Similarity=0.352 Sum_probs=31.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
..|.|||+|..|...|..+++.|++|+++|+.+.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998754
No 459
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.12 E-value=0.013 Score=40.09 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=30.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEecc
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKS 37 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~ 37 (184)
...++|+|.|-.|..+|..|.+.|.+|++.|++
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 357999999999999999999999999999875
No 460
>PLN02240 UDP-glucose 4-epimerase
Probab=96.11 E-value=0.012 Score=43.74 Aligned_cols=37 Identities=24% Similarity=0.489 Sum_probs=33.0
Q ss_pred CCCccccEEEECC-CHHHHHHHHHHHhCCCCeEEEecc
Q 030042 1 MAMVEKDVVIIGA-GIAGLATALALKRLGVEPLVLEKS 37 (184)
Q Consensus 1 m~~~~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~ 37 (184)
|+|+...|+|.|| |..|..++..|.++|.+|+++++.
T Consensus 1 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~ 38 (352)
T PLN02240 1 MSLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNL 38 (352)
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 7777778999997 999999999999999999999753
No 461
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.11 E-value=0.009 Score=44.64 Aligned_cols=33 Identities=30% Similarity=0.597 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
++.|||.|..||..|..|++.|.+|+.+|.++.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 689999999999999999999999999998753
No 462
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.09 E-value=0.011 Score=44.14 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=31.6
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD 38 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~ 38 (184)
+...|+|||+|..|..+|..|++.|+ +++++|.+.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 35789999999999999999999998 799999865
No 463
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.08 E-value=0.13 Score=41.16 Aligned_cols=33 Identities=33% Similarity=0.534 Sum_probs=27.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCC-CCeEEEeccC
Q 030042 6 KDVVIIGAGIAGLATALALKRLG-VEPLVLEKSD 38 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g-~~v~vie~~~ 38 (184)
..++|||+|..|.-.|..+.+.+ .+|+|+.+.+
T Consensus 268 k~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~ 301 (564)
T PRK12771 268 KRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT 301 (564)
T ss_pred CCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 47999999999999988888887 4688887754
No 464
>PLN02602 lactate dehydrogenase
Probab=96.04 E-value=0.015 Score=43.36 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=29.5
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC--CeEEEeccC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGV--EPLVLEKSD 38 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~ 38 (184)
.+|.|||+|-.|.++|+.|...++ +++++|.+.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~ 72 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP 72 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 699999999999999999988776 699999854
No 465
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.03 E-value=0.009 Score=43.12 Aligned_cols=32 Identities=25% Similarity=0.467 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
.|.|||.|..|..+|..|++.|.+|.++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999999999999999999999999864
No 466
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.02 E-value=0.011 Score=42.79 Aligned_cols=33 Identities=42% Similarity=0.518 Sum_probs=30.1
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD 38 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~ 38 (184)
..++|||+|-+|.++|+.|++.|. +|+|++|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 479999999999999999999998 799999864
No 467
>PRK06153 hypothetical protein; Provisional
Probab=96.01 E-value=0.0088 Score=44.77 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=31.2
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD 38 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~ 38 (184)
...|+|||+|-.|..++..|++.|. +++++|.+.
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~ 210 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDD 210 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCE
Confidence 4689999999999999999999998 799999874
No 468
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.99 E-value=0.014 Score=43.91 Aligned_cols=35 Identities=26% Similarity=0.398 Sum_probs=31.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD 38 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~ 38 (184)
+...|+|||+|..|..+|..|++.|. +++++|.+.
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 35789999999999999999999998 799999864
No 469
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.98 E-value=0.016 Score=40.51 Aligned_cols=39 Identities=26% Similarity=0.376 Sum_probs=33.5
Q ss_pred CCCccccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 1 MAMVEKDVVIIGA-GIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 1 m~~~~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
|.|+...++|.|+ |..|..++..|.++|.+|+++.|++.
T Consensus 1 ~~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~ 40 (246)
T PRK05653 1 MSLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEE 40 (246)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChh
Confidence 6666668999996 88999999999999999999998753
No 470
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.97 E-value=0.016 Score=40.49 Aligned_cols=34 Identities=38% Similarity=0.519 Sum_probs=30.4
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCC---eEEEeccC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVE---PLVLEKSD 38 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~---v~vie~~~ 38 (184)
...++|+|+|-+|..+|..|.+.|.+ +.++||..
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 45799999999999999999999975 99999973
No 471
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.97 E-value=0.015 Score=40.87 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=33.0
Q ss_pred CCCccccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 1 MAMVEKDVVIIGA-GIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 1 m~~~~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
|.++...++|+|| |..|..+|.+|.++|.+|+++.|..
T Consensus 1 ~~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~ 39 (251)
T PRK07231 1 MRLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNE 39 (251)
T ss_pred CCcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5555678999996 7899999999999999999999875
No 472
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=95.96 E-value=0.015 Score=40.74 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCC
Q 030042 7 DVVIIGAGIAGLATALALKRLGV-EPLVLEKSDG 39 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~ 39 (184)
.|+|||+|..|..++..|++.|+ +++|+|.+.-
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~V 34 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTI 34 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 48999999999999999999998 7999998653
No 473
>PRK06223 malate dehydrogenase; Reviewed
Probab=95.96 E-value=0.016 Score=42.44 Aligned_cols=34 Identities=29% Similarity=0.456 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccCC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGV-EPLVLEKSDG 39 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~ 39 (184)
.+|.|||+|..|..+|+.+++.+. +++++|....
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 489999999999999999998876 8999998543
No 474
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=95.95 E-value=0.014 Score=41.11 Aligned_cols=35 Identities=29% Similarity=0.384 Sum_probs=30.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCC-----------CCeEEEeccC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLG-----------VEPLVLEKSD 38 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g-----------~~v~vie~~~ 38 (184)
+..+|+|||+|-.|..++..|++.| .+++|+|.+.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 4679999999999999999999874 3889999865
No 475
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=95.95 E-value=0.012 Score=40.94 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD 38 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~ 38 (184)
+..|+|||-|-.|..++-.|+|.|+ ++++||.+.
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~ 64 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDD 64 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccc
Confidence 5689999999999999999999999 799999876
No 476
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=95.86 E-value=0.018 Score=40.70 Aligned_cols=35 Identities=29% Similarity=0.355 Sum_probs=32.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
...++|+|+|..+..+|..++..|++|+|+|.++.
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 46899999999999999999999999999997754
No 477
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.85 E-value=0.021 Score=37.92 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=30.1
Q ss_pred ccccEEEECCCH-HHHHHHHHHHhCCCCeEEEecc
Q 030042 4 VEKDVVIIGAGI-AGLATALALKRLGVEPLVLEKS 37 (184)
Q Consensus 4 ~~~dv~IiGgG~-~Gl~~A~~l~~~g~~v~vie~~ 37 (184)
...+++|||+|- +|..+|..|.++|.+|.++.+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 356899999996 6999999999999999999985
No 478
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.83 E-value=0.014 Score=46.42 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
-+++|+|+|..|..+|..|.++|.+++++|+++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~ 451 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT 451 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence 4789999999999999999999999999999753
No 479
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=95.83 E-value=0.016 Score=42.17 Aligned_cols=34 Identities=29% Similarity=0.436 Sum_probs=31.1
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
...|.|||+|..|.-.|..++..|++|+++|.+.
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~ 36 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISP 36 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence 4589999999999999999999779999999874
No 480
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.82 E-value=0.016 Score=42.25 Aligned_cols=34 Identities=29% Similarity=0.477 Sum_probs=31.3
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
...++|||.|.+|..++..|.+.|.+|.++++.+
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4689999999999999999999999999999874
No 481
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.81 E-value=0.014 Score=43.61 Aligned_cols=32 Identities=38% Similarity=0.560 Sum_probs=27.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042 7 DVVIIGAGIAGLATALALKRLGV-EPLVLEKSD 38 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~ 38 (184)
.|+|+|+||.||.++..++..|. +|+++|+.+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~ 203 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP 203 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 59999999999999888878886 677778765
No 482
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=95.80 E-value=0.013 Score=47.96 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=31.3
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
..|.|||+|..|...|..++..|++|+++|.+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998753
No 483
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.79 E-value=0.023 Score=39.96 Aligned_cols=38 Identities=26% Similarity=0.321 Sum_probs=32.6
Q ss_pred CCCccccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 1 MAMVEKDVVIIGA-GIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 1 m~~~~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
|.++...++|+|+ |..|..+|..|+++|.+|++++++.
T Consensus 1 ~~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~ 39 (253)
T PRK08217 1 MDLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ 39 (253)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5545568999998 9999999999999999999998764
No 484
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.77 E-value=0.015 Score=45.16 Aligned_cols=33 Identities=21% Similarity=0.131 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
..|+|+|.|.+|.++|..|.+.|.+|++.|.++
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 479999999999999999999999999999643
No 485
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.76 E-value=0.017 Score=43.77 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=31.5
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
...|+|+|.|+.|..+|..|+..|.+|+++|.++.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 35799999999999999999999999999998763
No 486
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.75 E-value=0.018 Score=43.47 Aligned_cols=35 Identities=34% Similarity=0.449 Sum_probs=31.5
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD 38 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~ 38 (184)
+...|+|||+|-.|..+|..|++.|. +++++|.+.
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~ 169 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDV 169 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 35689999999999999999999999 699999874
No 487
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=95.75 E-value=0.014 Score=47.69 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
..|.|||+|..|...|..+++.|++|+++|.+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3699999999999999999999999999998753
No 488
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=95.74 E-value=0.018 Score=43.76 Aligned_cols=35 Identities=34% Similarity=0.348 Sum_probs=31.4
Q ss_pred ccccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042 4 VEKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD 38 (184)
Q Consensus 4 ~~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~ 38 (184)
+...|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 35789999999999999999999998 699999764
No 489
>PLN02612 phytoene desaturase
Probab=95.74 E-value=0.052 Score=43.32 Aligned_cols=54 Identities=19% Similarity=0.437 Sum_probs=40.0
Q ss_pred HHHHHHHhhC--CCCeeeeCceEEEEeccCCCCCcceEEEEecCcEEEeeEEEecCCc
Q 030042 108 KLLQTLADEL--PNGTIHFSSKIAAIDSQTHDGSSPVFIHLVDGTIVKTKFLIGCDGI 163 (184)
Q Consensus 108 ~l~~~l~~~~--~~~~i~~~~~v~~~~~~~~~~~~~~~v~~~~g~~~~a~~vI~a~G~ 163 (184)
.+.+.|.+.. .|++|+++++|++|..+++ +.. +.+.+.+|+.+.||.||.|+..
T Consensus 309 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~-g~v-~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 309 RLCMPIVDHFQSLGGEVRLNSRIKKIELNDD-GTV-KHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHhcCCEEEeCCeeeEEEECCC-CcE-EEEEECCCcEEECCEEEECCCH
Confidence 3455555543 2889999999999988652 222 5577778888999999999864
No 490
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.74 E-value=0.019 Score=42.03 Aligned_cols=33 Identities=36% Similarity=0.581 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCC--CeEEEeccCC
Q 030042 7 DVVIIGAGIAGLATALALKRLGV--EPLVLEKSDG 39 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~--~v~vie~~~~ 39 (184)
.|+|||+|..|.++|+.|+..|. ++.++|++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 58999999999999999999884 7999998653
No 491
>PRK08264 short chain dehydrogenase; Validated
Probab=95.74 E-value=0.026 Score=39.42 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=32.4
Q ss_pred CCCccccEEEECC-CHHHHHHHHHHHhCCC-CeEEEeccCC
Q 030042 1 MAMVEKDVVIIGA-GIAGLATALALKRLGV-EPLVLEKSDG 39 (184)
Q Consensus 1 m~~~~~dv~IiGg-G~~Gl~~A~~l~~~g~-~v~vie~~~~ 39 (184)
|++....++|+|| |..|..+|..|.++|. +|+++.+...
T Consensus 2 ~~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~ 42 (238)
T PRK08264 2 MDIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPE 42 (238)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChh
Confidence 3444567999995 9999999999999999 9999998653
No 492
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=95.74 E-value=0.016 Score=42.28 Aligned_cols=32 Identities=31% Similarity=0.470 Sum_probs=28.5
Q ss_pred EEEECCCHHHHHHHHHHHhCCC-CeEEEeccCC
Q 030042 8 VVIIGAGIAGLATALALKRLGV-EPLVLEKSDG 39 (184)
Q Consensus 8 v~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~~ 39 (184)
|.|||+|..|..+|+.|+..++ +|+++|.++.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence 5799999999999999998876 9999998753
No 493
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=95.73 E-value=0.013 Score=45.45 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHHHhCCCCeEEEeccCC
Q 030042 6 KDVVIIGAGIAGLATALALKRLGVEPLVLEKSDG 39 (184)
Q Consensus 6 ~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~~ 39 (184)
.+|.|||.|..|..+|..|+++|++|.++++.+.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 4799999999999999999999999999998653
No 494
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.72 E-value=0.021 Score=41.39 Aligned_cols=34 Identities=26% Similarity=0.480 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
...++|+|.|.+|..+|..|...|.+|++++|..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3579999999999999999999999999999864
No 495
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.72 E-value=0.017 Score=44.61 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
+++|+|+|..|..+|..|.+.|.+|+++|+++
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 69999999999999999999999999999865
No 496
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=95.71 E-value=0.017 Score=42.27 Aligned_cols=32 Identities=28% Similarity=0.467 Sum_probs=28.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 7 DVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 7 dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
.|+|+|+|..|...|+.|++.|.+|+++-|.+
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 68999999999999999999997788877754
No 497
>PRK07326 short chain dehydrogenase; Provisional
Probab=95.71 E-value=0.022 Score=39.78 Aligned_cols=36 Identities=25% Similarity=0.253 Sum_probs=30.5
Q ss_pred CccccEEEECC-CHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 3 MVEKDVVIIGA-GIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 3 ~~~~dv~IiGg-G~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
++...++|+|+ |..|..+|..|+++|.+|+++.|++
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~ 40 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQ 40 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCH
Confidence 33457999985 8899999999999999999998864
No 498
>PRK07411 hypothetical protein; Validated
Probab=95.71 E-value=0.018 Score=43.70 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCC-CeEEEeccC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGV-EPLVLEKSD 38 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~-~v~vie~~~ 38 (184)
...|+|||+|-.|..+|..|++.|+ +++++|.+.
T Consensus 38 ~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 5789999999999999999999998 699999764
No 499
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.71 E-value=0.016 Score=45.17 Aligned_cols=34 Identities=35% Similarity=0.503 Sum_probs=30.9
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
...++|+|+|+.|+.++..+...|.+|+++|.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3589999999999999999999999999999865
No 500
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.70 E-value=0.018 Score=45.09 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=30.7
Q ss_pred cccEEEECCCHHHHHHHHHHHhCCCCeEEEeccC
Q 030042 5 EKDVVIIGAGIAGLATALALKRLGVEPLVLEKSD 38 (184)
Q Consensus 5 ~~dv~IiGgG~~Gl~~A~~l~~~g~~v~vie~~~ 38 (184)
...|.|+|.|.+|+++|..|.+.|.+|.+.|...
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 4579999999999999999999999999999644
Done!