BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030045
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I9Y|A Chain A, Solution Structure Of Arabidopsis Thaliana Protein
At1g70830, A Member Of The Major Latex Protein Family
Length = 166
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 100/157 (63%), Gaps = 4/157 (2%)
Query: 2 SLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFT 61
SL G+LE +E+KASADK H +F+ +PH V+ SP ++Q C+L EG+WG G+++ W +
Sbjct: 14 SLVGKLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYV 73
Query: 62 RYAGNPQIVKELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRF 121
+ G ++ KE IE V+ + + F++IEG++++ YKSF +VT K GS+V +
Sbjct: 74 -HDGEAKVAKERIEAVEPDKNLITFRVIEGDLMKE-YKSFLLTIQVTPKPGGP-GSIVHW 130
Query: 122 TYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQHE 158
+YEK +E V E+ +L+ +++ K ID +++ E
Sbjct: 131 HLEYEKISEEVAHPET-LLQFCVEVSKEIDEHLLAEE 166
>pdb|1E09|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Length = 159
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 30 IVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFKLI 89
+V I+PQ+++ E++EG+ G PG + TF VK I+ +D ENY + LI
Sbjct: 29 LVPKIAPQAIKHSEILEGDGG-PGTIKKITFGE-GSQYGYVKHKIDSIDKENYSYSYTLI 86
Query: 90 EGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKV---LEMMIDI 146
EG+ L + K+ GGS+++ T Y + NV E V E ++
Sbjct: 87 EGDALGDTLEKISYETKLVASPS--GGSIIKSTSHYHTKG-NVEIKEEHVKAGKEKASNL 143
Query: 147 VKNIDAYIIQHEEA 160
K I+ Y+ H +A
Sbjct: 144 FKLIETYLKGHPDA 157
>pdb|4A84|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
F30v Mutant In Complex With Deoxycholate
Length = 159
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 70/135 (51%), Gaps = 8/135 (5%)
Query: 29 HIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEVVDDENYITIFK 87
++V ++PQ++ S E IEG G PG + +F G P + VK+ ++ VD N+ +
Sbjct: 28 NLVPKVAPQAISSVENIEGNGG-PGTIKKISFPE--GFPFKYVKDRVDEVDHTNFKYNYS 84
Query: 88 LIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLE--SKVLEMMID 145
+IEG + + + K+ D GGS+++ + KY + ++ E EM
Sbjct: 85 VIEGGPIGDTLEKISNEIKIVATPD--GGSILKISNKYHTKGDHEVKAEQVKASKEMGET 142
Query: 146 IVKNIDAYIIQHEEA 160
+++ +++Y++ H +A
Sbjct: 143 LLRAVESYLLAHSDA 157
>pdb|4A80|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
pdb|4A81|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Ternary Complex With 8-Anilinonaphthalene-1-Sulfonate
( Ans) And Deoxycholic Acid
pdb|4A83|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Deoxycholate.
pdb|4A85|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Kinetin.
pdb|4A86|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Ternary Complex With Kinetin And
8-Anilinonaphthalene-1- Sulfonate (Ans)
pdb|4A87|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Naringenin.
pdb|4A88|A Chain A, Crystal Structure Of Native Major Birch Pollen Allergen
Bet V 1 Isoform A
pdb|4A8G|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Dimethylbenzylammonium Propane Sulfonate
Length = 159
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 69/135 (51%), Gaps = 8/135 (5%)
Query: 29 HIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEVVDDENYITIFK 87
++ ++PQ++ S E IEG G PG + +F G P + VK+ ++ VD N+ +
Sbjct: 28 NLFPKVAPQAISSVENIEGNGG-PGTIKKISFPE--GFPFKYVKDRVDEVDHTNFKYNYS 84
Query: 88 LIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLE--SKVLEMMID 145
+IEG + + + K+ D GGS+++ + KY + ++ E EM
Sbjct: 85 VIEGGPIGDTLEKISNEIKIVATPD--GGSILKISNKYHTKGDHEVKAEQVKASKEMGET 142
Query: 146 IVKNIDAYIIQHEEA 160
+++ +++Y++ H +A
Sbjct: 143 LLRAVESYLLAHSDA 157
>pdb|1FSK|A Chain A, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|D Chain D, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|G Chain G, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|J Chain J, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1BV1|A Chain A, Birch Pollen Allergen Bet V 1
pdb|1BTV|A Chain A, Structure Of Bet V 1, Nmr, 20 Structures
Length = 159
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 69/135 (51%), Gaps = 8/135 (5%)
Query: 29 HIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEVVDDENYITIFK 87
++ ++PQ++ S E IEG G PG + +F G P + VK+ ++ VD N+ +
Sbjct: 28 NLFPKVAPQAISSVENIEGNGG-PGTIKKISFPE--GLPFKYVKDRVDEVDHTNFKYNYS 84
Query: 88 LIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLE--SKVLEMMID 145
+IEG + + + K+ D GGS+++ + KY + ++ E EM
Sbjct: 85 VIEGGPIGDTLEKISNEIKIVATPD--GGSILKISNKYHTKGDHEVKAEQVKASKEMGET 142
Query: 146 IVKNIDAYIIQHEEA 160
+++ +++Y++ H +A
Sbjct: 143 LLRAVESYLLAHSDA 157
>pdb|1H2O|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Mutant E45w
Length = 159
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 8/134 (5%)
Query: 30 IVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFKLI 89
+V I+PQ+++ E++ G+ G PG + TF VK I+ +D ENY + LI
Sbjct: 29 LVPKIAPQAIKHSEILWGDGG-PGTIKKITFGE-GSQYGYVKHKIDSIDKENYSYSYTLI 86
Query: 90 EGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKV---LEMMIDI 146
EG+ L + K+ GGS+++ T Y + NV E V E ++
Sbjct: 87 EGDALGDTLEKISYETKLVASPS--GGSIIKSTSHYHTKG-NVEIKEEHVKAGKEKASNL 143
Query: 147 VKNIDAYIIQHEEA 160
K I+ Y+ H +A
Sbjct: 144 FKLIETYLKGHPDA 157
>pdb|1FM4|A Chain A, Crystal Structure Of The Birch Pollen Allergen Bet V 1l
Length = 159
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 8/134 (5%)
Query: 30 IVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEVVDDENYITIFKL 88
+V ++PQ++ S E IEG G PG + F G P + VK+ ++ VD N+ + +
Sbjct: 29 LVPKVAPQAISSVENIEGNGG-PGTIKKINFPE--GFPFKYVKDRVDEVDHTNFKYNYSV 85
Query: 89 IEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYE-KQNENVPDLESKV-LEMMIDI 146
IEG + + + K+ D GG +++ + KY K N V + K EM +
Sbjct: 86 IEGGPVGDTLEKISNEIKIVATPD--GGCVLKISNKYHTKGNHEVKAEQVKASKEMGETL 143
Query: 147 VKNIDAYIIQHEEA 160
++ +++Y++ H +A
Sbjct: 144 LRAVESYLLAHSDA 157
>pdb|1B6F|A Chain A, Birch Pollen Allergen Bet V 1
Length = 159
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 69/135 (51%), Gaps = 8/135 (5%)
Query: 29 HIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEVVDDENYITIFK 87
++ ++PQ++ S E IEG G PG + +F G P + VK+ ++ VD N+ +
Sbjct: 28 NLFPKVAPQAISSVENIEGNGG-PGTIKKISFPE--GFPFKYVKDRVDEVDHTNFKYNYS 84
Query: 88 LIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLE--SKVLEMMID 145
+IEG + + + K+ D GGS+++ + KY + ++ E E+
Sbjct: 85 VIEGGPIGDTLEKISNEIKIVATPD--GGSILKISNKYHTKGDHEVKAEQVKASKELGET 142
Query: 146 IVKNIDAYIIQHEEA 160
+++ +++Y++ H +A
Sbjct: 143 LLRAVESYLLAHSDA 157
>pdb|1LLT|A Chain A, Birch Pollen Allergen Bet V 1 Mutant E45s
Length = 159
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 68/135 (50%), Gaps = 8/135 (5%)
Query: 29 HIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEVVDDENYITIFK 87
++ ++PQ++ S E I G G PG + +F G P + VK+ ++ VD N+ +
Sbjct: 28 NLFPKVAPQAISSVENISGNGG-PGTIKKISFPE--GLPFKYVKDRVDEVDHTNFKYNYS 84
Query: 88 LIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLE--SKVLEMMID 145
+IEG + + + K+ D GGS+++ + KY + ++ E EM
Sbjct: 85 VIEGGPIGDTLEKISNEIKIVATPD--GGSILKISNKYHTKGDHEVKAEQVKASKEMGET 142
Query: 146 IVKNIDAYIIQHEEA 160
+++ +++Y++ H +A
Sbjct: 143 LLRAVESYLLAHSDA 157
>pdb|1QMR|A Chain A, Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E45s,
P108g
Length = 159
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 66/130 (50%), Gaps = 8/130 (6%)
Query: 34 ISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEVVDDENYITIFKLIEGN 92
++PQ++ S E I G G PG + +F G P + VK+ ++ VD N+ + +IEG
Sbjct: 33 VAPQAISSVENISGNGG-PGTIKKISFPE--GLPFKYVKDRVDEVDHTNFKYNYSVIEGG 89
Query: 93 VLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLE--SKVLEMMIDIVKNI 150
+ + + K+ D GGS+++ + KY + ++ E EM +++ +
Sbjct: 90 PIGDTLEKISNEIKIVATGD--GGSILKISNKYHTKGDHEVKAEQVKASKEMGETLLRAV 147
Query: 151 DAYIIQHEEA 160
++Y++ H +A
Sbjct: 148 ESYLLAHSDA 157
>pdb|4A8U|A Chain A, Crystal Structure Of Native Birch Pollen Allergen Bet V 1
Isoform J
pdb|4A8V|A Chain A, Crystal Structure Of Birch Pollen Allergen Bet V 1 Isoform
J In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
Length = 159
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 68/135 (50%), Gaps = 8/135 (5%)
Query: 29 HIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEVVDDENYITIFK 87
++ ++PQ++ S E IEG G PG + +F G P + VK+ ++ VD N+ +
Sbjct: 28 NLFPKVAPQAISSVENIEGNGG-PGTIKKISFPE--GFPFKYVKDRVDEVDHTNFKYSYS 84
Query: 88 LIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLE--SKVLEMMID 145
+IEG + + + K+ + GGS+++ KY + ++ E EM
Sbjct: 85 VIEGGPVGDTLEKISNEIKIVATPN--GGSILKINNKYHTKGDHEVKAEQIKASKEMGET 142
Query: 146 IVKNIDAYIIQHEEA 160
+++ +++Y++ H +A
Sbjct: 143 LLRAVESYLLAHSDA 157
>pdb|2LPX|A Chain A, Solution Structure Of Strawberry Allergen Fra A 1e
Length = 170
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 30 IVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFKLI 89
++ I+PQ+V+ E++EG+ G PG + TF + VK I +D N+ + LI
Sbjct: 30 LIPKIAPQAVKCAEILEGDGG-PGTIKKITFGE-GSHYGYVKHKIHSIDKVNHTYSYSLI 87
Query: 90 EGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNE 130
EG+ L + K+ GG++++ T KY + +
Sbjct: 88 EGDALSENIEKIDYETKLVSAP--HGGTIIKTTSKYHTKGD 126
>pdb|2QIM|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With Cytokinin
pdb|3E85|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With
Diphenylurea
Length = 158
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 6/141 (4%)
Query: 19 KVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVD 78
K+++ I+ + +++QS E++EG G PG + TF G + V IE +D
Sbjct: 18 KLYKALVTDADIIIPKAVETIQSVEIVEGNGG-PGTIKKLTFIE-GGESKYVLHKIEAID 75
Query: 79 DENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPD-LES 137
+ N + ++ G L + K+ + + GGS+ + T K E + + P+ E
Sbjct: 76 EANLGYNYSIVGGVGLPDTIEKISFETKLVEGAN--GGSIGKVTIKIETKGDAQPNEEEG 133
Query: 138 KVLEMMID-IVKNIDAYIIQH 157
K + D K I++Y+ H
Sbjct: 134 KAAKARGDAFFKAIESYLSAH 154
>pdb|3NJ1|A Chain A, X-Ray Crystal Structure Of The Pyl2(V114i)-Pyrabactin A
Complex
Length = 193
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 39 VQSCELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEVVDDENYITIFKLIEGNVLEML 97
V+ C LI G+ G G+V T +G P E +E VDD++ + F+++ G
Sbjct: 70 VKRCRLISGD-GDVGSV--REVTVISGLPASTSTERLEFVDDDHRVLSFRIVGGEHRLKN 126
Query: 98 YKSFCSVAKVTQKD 111
YKS SV + +D
Sbjct: 127 YKSVTSVNEFLNQD 140
>pdb|3NJ0|A Chain A, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|B Chain B, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|C Chain C, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
Length = 193
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 39 VQSCELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEVVDDENYITIFKLIEGNVLEML 97
V+ C LI G+ G G+V T +G P E +E VDD++ + F+++ G
Sbjct: 70 VKRCRLISGD-GDVGSV--REVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKN 126
Query: 98 YKSFCSVAKVTQKD 111
YKS SV + +D
Sbjct: 127 YKSVTSVNEFLNQD 140
>pdb|3NMH|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
Length = 178
Score = 30.4 bits (67), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 39 VQSCELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEVVDDENYITIFKLIEGNVLEML 97
V+ C LI G+ G G+V T +G P E +E VDD++ + F+++ G
Sbjct: 56 VKRCRLISGD-GDVGSV--REVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKN 112
Query: 98 YKSFCSVAKVTQKD 111
YKS SV + +D
Sbjct: 113 YKSVTSVNEFLNQD 126
>pdb|3KDH|A Chain A, Structure Of Ligand-Free Pyl2
pdb|3KDH|B Chain B, Structure Of Ligand-Free Pyl2
pdb|3KDH|C Chain C, Structure Of Ligand-Free Pyl2
pdb|3KDI|A Chain A, Structure Of (+)-Aba Bound Pyl2
pdb|3NR4|A Chain A, Pyrabactin-Bound Pyl2
pdb|3NR4|B Chain B, Pyrabactin-Bound Pyl2
pdb|3NR4|C Chain C, Pyrabactin-Bound Pyl2
pdb|3NS2|A Chain A, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|B Chain B, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|C Chain C, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3KL1|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
pdb|3KL1|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
Length = 190
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 39 VQSCELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEVVDDENYITIFKLIEGNVLEML 97
V+ C LI G+ G G+V T +G P E +E VDD++ + F+++ G
Sbjct: 67 VKRCRLISGD-GDVGSV--REVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKN 123
Query: 98 YKSFCSVAKVTQKD 111
YKS SV + +D
Sbjct: 124 YKSVTSVNEFLNQD 137
>pdb|3UJL|A Chain A, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 177
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 39 VQSCELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEVVDDENYITIFKLIEGNVLEML 97
V+ C LI G+ G G+V T +G P E +E VDD++ + F+++ G
Sbjct: 56 VKRCRLISGD-GDVGSV--REVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKN 112
Query: 98 YKSFCSVAKVTQKD 111
YKS SV + +D
Sbjct: 113 YKSVTSVNEFLNQD 126
>pdb|3KAZ|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|C Chain C, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KB0|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2
pdb|3KB3|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 176
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 39 VQSCELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEVVDDENYITIFKLIEGNVLEML 97
V+ C LI G+ G G+V T +G P E +E VDD++ + F+++ G
Sbjct: 55 VKRCRLISGD-GDVGSV--REVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKN 111
Query: 98 YKSFCSVAKVTQKD 111
YKS SV + +D
Sbjct: 112 YKSVTSVNEFLNQD 125
>pdb|3NMP|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMT|A Chain A, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
pdb|3NMV|A Chain A, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
Length = 178
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 39 VQSCELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEVVDDENYITIFKLIEGNVLEML 97
V+ C LI G+ G G+V T +G P E +E VDD++ + F+++ G
Sbjct: 56 VKRCRLISGD-GDVGSV--REVTVISGLPFSTSTERLEFVDDDHRVLSFRVVGGEHRLKN 112
Query: 98 YKSFCSVAKVTQKD 111
YKS SV + +D
Sbjct: 113 YKSVTSVNEFLNQD 126
>pdb|1BG3|A Chain A, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
pdb|1BG3|B Chain B, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
Length = 918
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 7 LEAVIEVKASADKVHEVFSCRPH-IVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAG 65
L + V + K+H FS H V +SP+ S L E GK A+I R G
Sbjct: 854 LNVTVGVDGTLYKLHPHFSRIMHQTVKELSPKCTVSFLLSEDGSGKGAALITAVGVRLRG 913
Query: 66 NPQIV 70
+P I
Sbjct: 914 DPSIA 918
>pdb|2OOD|A Chain A, Crystal Structure Of Guanine Deaminase From Bradyrhizobium
Japonicum
Length = 475
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 18 DKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEV 76
DK +++ P SP+ +++C+ ++ E CW T + NP + L+E
Sbjct: 195 DKGRNLYAITPRFAFGASPELLKACQRLKHE-----HPDCWVNTHISENPAECSGVLVEH 249
Query: 77 VDDENYITIF 86
D ++Y+ ++
Sbjct: 250 PDCQDYLGVY 259
>pdb|3O8O|A Chain A, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|C Chain C, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|E Chain E, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|G Chain G, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 787
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 119 VRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQHEEARVDDTDEVLLVN 172
++F ++ K+NE P+ ++KVL D ++HE DD+ V+ VN
Sbjct: 682 IKFIEQWNKKNEASPNTDAKVLRFKFD-THGEKVPTVEHE----DDSAAVICVN 730
>pdb|2VNE|A Chain A, The X-Ray Structure Of Norcoclaurine Synthase From
Thalictrum Flavum
pdb|2VNE|B Chain B, The X-Ray Structure Of Norcoclaurine Synthase From
Thalictrum Flavum
pdb|2VQ5|A Chain A, X-Ray Structure Of Norcoclaurine Synthase From Thalictrum
Flavum In Complex With Dopamine And Hydroxybenzaldehyde
pdb|2VQ5|B Chain B, X-Ray Structure Of Norcoclaurine Synthase From Thalictrum
Flavum In Complex With Dopamine And Hydroxybenzaldehyde
Length = 201
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 11 IEVKASADKVHEVFSCRPHIVTSIS---PQSVQSCELIEGEWGKPGAVICWTFTRYAGNP 67
+EV ASAD + V+S P + + P + + E+I G+ G G ++ TF P
Sbjct: 35 LEVAASADDIWTVYSW-PGLAKHLPDLLPGAFEKLEII-GDGGV-GTILDXTFVP-GEFP 90
Query: 68 QIVKELIEVVDDENYITIFKLIEGNVLEM 96
KE +VD+E+ + + IEG L++
Sbjct: 91 HEYKEKFILVDNEHRLKKVQXIEGGYLDL 119
>pdb|1BS2|A Chain A, Yeast Arginyl-Trna Synthetase
pdb|1F7U|A Chain A, Crystal Structure Of The Arginyl-trna Synthetase Complexed
With The Trna(arg) And L-arg
pdb|1F7V|A Chain A, Crystal Structure Of Yeast Arginyl-Trna Synthetase
Complexed With The Trnaarg
Length = 607
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 47 GEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFKLIE 90
G+WGK ++ F RY +VK+ I + D Y+ I K IE
Sbjct: 190 GDWGKQFGLLAVGFERYGNEEALVKDPIHHLFDV-YVRINKDIE 232
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 16/94 (17%)
Query: 65 GNPQIVKELIEVVDDEN-----------YITIFKLIEGNVLE-----MLYKSFCSVAKVT 108
GNP + L E++DD++ Y++I ++ +LE +L+ S+ V
Sbjct: 101 GNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVL 160
Query: 109 QKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEM 142
Q D S+++ + ++ LES++ E+
Sbjct: 161 QDDADPMVSVMKMDKSPTESYSDIGGLESQIQEI 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,302,677
Number of Sequences: 62578
Number of extensions: 214433
Number of successful extensions: 645
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 623
Number of HSP's gapped (non-prelim): 38
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)