Query 030045
Match_columns 183
No_of_seqs 127 out of 826
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 07:39:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030045.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030045hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00407 Bet_v_1: Pathogenesis 100.0 5.4E-43 1.2E-47 273.6 18.6 151 2-157 1-151 (151)
2 cd07816 Bet_v1-like Ligand-bin 100.0 2.2E-35 4.7E-40 229.1 20.2 146 5-156 1-147 (148)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.7 4E-16 8.7E-21 116.1 16.8 136 6-154 2-139 (140)
4 PF10604 Polyketide_cyc2: Poly 99.6 7E-13 1.5E-17 98.6 19.0 107 5-127 2-108 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.5 1.5E-12 3.3E-17 98.4 15.9 135 7-154 1-142 (144)
6 cd08865 SRPBCC_10 Ligand-bindi 99.5 8.2E-12 1.8E-16 92.6 16.0 108 7-127 1-108 (140)
7 cd07819 SRPBCC_2 Ligand-bindin 99.5 1.3E-11 2.7E-16 92.2 16.9 112 6-129 3-114 (140)
8 cd08861 OtcD1_ARO-CYC_like N-t 99.4 4.2E-11 9.1E-16 90.3 14.9 113 7-130 1-113 (142)
9 cd07813 COQ10p_like Coenzyme Q 99.3 9.1E-11 2E-15 88.5 13.0 131 8-153 2-134 (138)
10 cd08862 SRPBCC_Smu440-like Lig 99.2 1.4E-09 3E-14 81.0 16.6 106 6-127 2-107 (138)
11 cd07812 SRPBCC START/RHO_alpha 99.2 9.4E-10 2E-14 79.2 15.0 113 8-131 2-114 (141)
12 cd07822 SRPBCC_4 Ligand-bindin 99.2 2.1E-09 4.5E-14 79.8 17.1 110 7-128 2-112 (141)
13 cd08860 TcmN_ARO-CYC_like N-te 99.1 8E-09 1.7E-13 80.0 16.2 114 5-131 1-116 (146)
14 cd07814 SRPBCC_CalC_Aha1-like 99.1 2.6E-09 5.7E-14 79.5 12.8 134 7-154 2-137 (139)
15 cd07824 SRPBCC_6 Ligand-bindin 99.1 1.3E-08 2.8E-13 77.8 16.8 109 7-129 3-113 (146)
16 cd05018 CoxG Carbon monoxide d 99.1 6.8E-09 1.5E-13 77.7 14.6 112 6-130 2-115 (144)
17 cd07825 SRPBCC_7 Ligand-bindin 99.1 7.3E-09 1.6E-13 78.2 14.7 138 7-154 2-143 (144)
18 cd07820 SRPBCC_3 Ligand-bindin 99.1 5.3E-09 1.1E-13 79.2 13.2 110 7-128 1-112 (137)
19 cd07818 SRPBCC_1 Ligand-bindin 99.1 1E-08 2.2E-13 78.0 14.5 112 6-130 3-119 (150)
20 cd07817 SRPBCC_8 Ligand-bindin 99.0 2.3E-08 4.9E-13 74.5 14.3 107 7-130 2-108 (139)
21 PF03364 Polyketide_cyc: Polyk 99.0 4.8E-08 1E-12 72.5 15.3 108 13-136 1-111 (130)
22 PRK10724 hypothetical protein; 98.9 5.3E-08 1.1E-12 76.6 13.2 110 6-129 16-125 (158)
23 cd07823 SRPBCC_5 Ligand-bindin 98.8 4.9E-07 1.1E-11 69.0 14.4 113 8-130 2-116 (146)
24 cd08898 SRPBCC_CalC_Aha1-like_ 98.4 8.7E-06 1.9E-10 61.1 13.0 137 6-155 2-144 (145)
25 cd08900 SRPBCC_CalC_Aha1-like_ 98.4 4E-05 8.7E-10 58.2 16.1 138 7-155 2-142 (143)
26 cd08893 SRPBCC_CalC_Aha1-like_ 98.4 9.4E-06 2E-10 60.1 11.9 132 6-154 1-134 (136)
27 cd08899 SRPBCC_CalC_Aha1-like_ 98.4 1.1E-05 2.5E-10 62.5 12.7 129 5-158 11-139 (157)
28 cd08895 SRPBCC_CalC_Aha1-like_ 98.3 0.00011 2.4E-09 56.0 15.5 137 6-155 1-145 (146)
29 cd07826 SRPBCC_CalC_Aha1-like_ 98.3 3.9E-05 8.5E-10 58.5 12.9 137 7-155 2-141 (142)
30 PF06240 COXG: Carbon monoxide 98.2 0.00014 3E-09 55.5 15.2 106 10-130 2-111 (140)
31 COG3427 Carbon monoxide dehydr 98.2 4.3E-05 9.4E-10 59.4 11.9 135 7-155 3-144 (146)
32 cd08894 SRPBCC_CalC_Aha1-like_ 98.2 4.4E-05 9.6E-10 57.8 11.9 133 7-154 2-137 (139)
33 cd08896 SRPBCC_CalC_Aha1-like_ 98.0 0.00016 3.4E-09 55.2 12.3 139 7-155 2-145 (146)
34 cd08897 SRPBCC_CalC_Aha1-like_ 98.0 0.00045 9.8E-09 51.8 14.5 129 6-155 1-132 (133)
35 cd08876 START_1 Uncharacterize 98.0 0.00093 2E-08 53.2 17.0 142 5-153 41-193 (195)
36 COG5637 Predicted integral mem 98.0 4.6E-05 1E-09 61.2 8.7 114 1-130 66-179 (217)
37 COG2867 Oligoketide cyclase/li 97.9 0.00011 2.4E-09 57.1 8.9 113 5-130 2-114 (146)
38 cd08891 SRPBCC_CalC Ligand-bin 97.9 0.00072 1.6E-08 51.7 13.3 133 7-154 2-147 (149)
39 cd08901 SRPBCC_CalC_Aha1-like_ 97.6 0.00086 1.9E-08 50.6 10.4 126 7-156 2-132 (136)
40 cd08892 SRPBCC_Aha1 Putative h 97.6 0.0039 8.6E-08 46.4 12.9 121 7-154 2-124 (126)
41 PF08327 AHSA1: Activator of H 97.5 0.0043 9.3E-08 45.0 12.3 120 14-154 1-123 (124)
42 COG3832 Uncharacterized conser 97.4 0.0073 1.6E-07 46.7 13.4 138 2-155 5-148 (149)
43 cd08863 SRPBCC_DUF1857 DUF1857 96.6 0.22 4.7E-06 38.7 15.3 111 16-149 18-130 (141)
44 PTZ00220 Activator of HSP-90 A 96.5 0.046 9.9E-07 41.3 10.1 120 13-154 1-126 (132)
45 PF08982 DUF1857: Domain of un 96.4 0.2 4.3E-06 39.1 13.5 90 16-128 19-108 (149)
46 cd08905 START_STARD1-like Chol 96.4 0.3 6.4E-06 39.8 14.9 147 5-155 49-207 (209)
47 cd08874 START_STARD9-like C-te 96.3 0.47 1E-05 38.9 16.1 146 6-154 46-203 (205)
48 cd08873 START_STARD14_15-like 96.0 0.76 1.6E-05 38.5 17.2 146 5-157 77-235 (235)
49 cd08868 START_STARD1_3_like Ch 95.7 0.83 1.8E-05 36.8 17.2 147 6-155 49-206 (208)
50 PF10698 DUF2505: Protein of u 95.6 0.7 1.5E-05 36.0 13.1 112 7-129 1-129 (159)
51 cd08871 START_STARD10-like Lip 95.2 1.4 3E-05 35.9 17.2 156 6-167 48-213 (222)
52 cd08877 START_2 Uncharacterize 94.8 1.6 3.4E-05 35.4 13.7 145 5-154 46-212 (215)
53 cd08903 START_STARD5-like Lipi 94.6 2.1 4.5E-05 34.8 15.1 143 7-154 48-205 (208)
54 cd00177 START Lipid-binding ST 94.5 1.6 3.6E-05 33.5 16.6 141 5-152 39-190 (193)
55 cd08906 START_STARD3-like Chol 94.4 2.3 5E-05 34.7 16.0 144 5-154 49-206 (209)
56 cd08913 START_STARD14-like Lip 93.4 4.2 9E-05 34.1 15.5 144 5-156 81-239 (240)
57 cd08870 START_STARD2_7-like Li 92.0 5.6 0.00012 32.1 16.8 146 6-155 51-207 (209)
58 cd08914 START_STARD15-like Lip 91.0 7.7 0.00017 32.6 12.3 117 5-127 78-205 (236)
59 smart00234 START in StAR and p 90.7 7 0.00015 30.8 17.7 146 5-156 45-202 (206)
60 cd08911 START_STARD7-like Lipi 90.5 8.2 0.00018 31.2 16.1 146 6-155 46-205 (207)
61 COG4276 Uncharacterized conser 88.9 9.4 0.0002 29.6 15.4 141 4-154 1-146 (153)
62 cd08867 START_STARD4_5_6-like 88.9 11 0.00023 30.3 16.0 146 6-154 47-205 (206)
63 cd08869 START_RhoGAP C-termina 88.8 11 0.00023 30.3 15.8 119 6-131 45-171 (197)
64 cd08872 START_STARD11-like Cer 86.0 19 0.0004 30.0 13.9 143 6-157 53-227 (235)
65 PF05952 ComX: Bacillus compet 85.9 0.31 6.6E-06 32.1 0.6 33 147-179 2-35 (57)
66 PF11485 DUF3211: Protein of u 79.4 26 0.00057 27.0 9.6 100 6-127 2-102 (136)
67 cd08910 START_STARD2-like Lipi 78.2 35 0.00075 27.6 12.8 140 6-154 50-204 (207)
68 PF01852 START: START domain; 74.2 40 0.00086 26.3 17.8 145 5-158 46-204 (206)
69 cd08908 START_STARD12-like C-t 55.9 1.1E+02 0.0024 24.9 13.5 120 5-131 52-178 (204)
70 PF11687 DUF3284: Domain of un 43.2 1.3E+02 0.0029 22.1 9.7 101 8-128 2-103 (120)
71 KOG3177 Oligoketide cyclase/li 42.4 1.6E+02 0.0034 24.6 7.4 109 11-129 74-182 (227)
72 PF11979 DUF3480: Domain of un 37.2 2.4E+02 0.0052 25.2 8.3 88 88-179 238-330 (356)
73 TIGR03505 FimV_core FimV N-ter 33.2 37 0.0008 23.3 2.1 24 145-175 17-40 (74)
74 KOG2936 Uncharacterized conser 25.8 4.5E+02 0.0098 23.0 8.9 97 6-124 174-271 (301)
75 PF00028 Cadherin: Cadherin do 25.2 2E+02 0.0043 19.2 4.8 20 73-92 17-39 (93)
76 cd08904 START_STARD6-like Lipi 20.6 4.6E+02 0.01 21.2 14.1 119 6-130 47-178 (204)
No 1
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=100.00 E-value=5.4e-43 Score=273.57 Aligned_cols=151 Identities=39% Similarity=0.679 Sum_probs=138.7
Q ss_pred CcceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCc
Q 030045 2 SLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDEN 81 (183)
Q Consensus 2 ~~~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~ 81 (183)
|++++++.|+++++||+|+|+++++.++++||++|+.|++|+++|||||..||||.|+|. ++++.+++|||++.+|++|
T Consensus 1 m~~~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~-~~~~~~~~Kekve~~D~~~ 79 (151)
T PF00407_consen 1 MGVGKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFG-PGGPFKYVKEKVEAIDEEN 79 (151)
T ss_dssp SCEEEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEE-TTSSEEEEEEEEEEEETTT
T ss_pred CCcEEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEec-CCCCcceeEEEEEeecCCC
Confidence 578999999999999999999999877799999999999999999995444599999999 8998899999999999999
Q ss_pred eEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHhhC
Q 030045 82 YITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQH 157 (183)
Q Consensus 82 ~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~~k~ie~yLl~~ 157 (183)
|+++|++|||++|+ .|++|.+++++.|. + +|||+++|+++|+++++..++|+. +++++..|+|+||+||++|
T Consensus 80 ~~~~y~viEGd~l~-~~~~~~~~~~~~~~-~-~g~~v~k~t~~Ye~~~~~~~~p~~-~~~~~~~~~K~ieayLlan 151 (151)
T PF00407_consen 80 KTITYTVIEGDVLG-DYKSFKSTIQKIPK-G-DGGCVVKWTIEYEKKGEDVPPPEK-YLDFAVGMFKAIEAYLLAN 151 (151)
T ss_dssp TEEEEEEEEETTGT-TTEEEEEEEEEEEE-T-TSCEEEEEEEEEEESSTSCHHHHH-HHHHHHHHHHHHHHHHHHT
T ss_pred cEEEEEEEeccccc-cEEEEEEEEEecCC-C-CCceEEEEEEEEEecCCCCCCcHH-HHHHHHHHHHHHHHHHhcC
Confidence 99999999999998 89999999999997 4 777999999999999998777777 9999999999999999997
No 2
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=100.00 E-value=2.2e-35 Score=229.13 Aligned_cols=146 Identities=34% Similarity=0.545 Sum_probs=132.4
Q ss_pred eEEEEEEEEcCCHHHHHHHHhcCCCcc-ccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceE
Q 030045 5 GELEAVIEVKASADKVHEVFSCRPHIV-TSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYI 83 (183)
Q Consensus 5 ~~~~~ei~i~apa~~vw~~~~d~~~~l-pk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~ 83 (183)
|+++.|++|+|||++||+++++|.+.+ +.|+| .|++|++++|+ |++||||.|+|. ++++.+++||||+++|+++|+
T Consensus 1 ~~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p-~v~~~~~~eG~-~~~GsvR~~~~~-~~~~~~~~kE~l~~~D~~~~~ 77 (148)
T cd07816 1 GTLEHEVELKVPAEKLWKAFVLDSHLLPPKLPP-VIKSVELLEGD-GGPGSIKLITFG-PGGKVKYVKERIDAVDEENKT 77 (148)
T ss_pred CcEEEEEEecCCHHHHHHHHhcChhhccccccc-cccEEEEEecC-CCCceEEEEEEc-CCCcceEEEEEEEEEcccccE
Confidence 578999999999999999999997544 56667 99999999999 899999999999 777778999999999999999
Q ss_pred EEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHhh
Q 030045 84 TIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQ 156 (183)
Q Consensus 84 ~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~~k~ie~yLl~ 156 (183)
++|+++||+++.++|++|.++++|.|. + +++|+++|+++|++.+++.++|.. +++.+..+++.++.|++.
T Consensus 78 ~~y~vveg~~~~~~~~~y~~t~~v~~~-~-~~~t~v~Wt~~ye~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~ 147 (148)
T cd07816 78 YKYTVIEGDVLKDGYKSYKVEIKFVPK-G-DGGCVVKWTIEYEKKGDAEPPEEE-IKAGKEKALKMFKAVEAY 147 (148)
T ss_pred EEEEEEecccccCceEEEEEEEEEEEC-C-CCCEEEEEEEEEEECCCCCCCHHH-HHhHHHHHHHHHHHHHhc
Confidence 999999999875469999999999997 4 778999999999999988777877 899999999999999875
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.73 E-value=4e-16 Score=116.11 Aligned_cols=136 Identities=24% Similarity=0.342 Sum_probs=110.3
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEE
Q 030045 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITI 85 (183)
Q Consensus 6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~ 85 (183)
.++.+++|++|+++||+++.|. ..+++|+| .+++++++++++ ++|+++.+.+. .+ ..+++++..+|+.+++++
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~-~~~~~w~~-~~~~~~~~~~~~-~~g~~~~~~~~-~g---~~~~~~i~~~~~~~~~i~ 74 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDF-GGLHKWHP-AVASCELEGGGP-GVGAVRTVTLK-DG---GTVRERLLALDDAERRYS 74 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCc-Cchhhhcc-CcceEEeecCCC-CCCeEEEEEeC-CC---CEEEEEehhcCccCCEEE
Confidence 5788999999999999999987 56799999 588999887763 78999999887 44 478999999999888999
Q ss_pred EEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHH
Q 030045 86 FKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYI 154 (183)
Q Consensus 86 y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yL 154 (183)
|++.+|+. ++.++..++++.|. + +|+|.++|+..|++.+. .+.+.. . ..+.....++.|.++|
T Consensus 75 ~~~~~~~~---~~~~~~~~~~~~~~-~-~~~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 75 YRIVEGPL---PVKNYVATIRVTPE-G-DGGTRVTWTAEFDPPEG-LTDELARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred EEecCCCC---CcccceEEEEEEEC-C-CCccEEEEEEEEecCCC-cchHHHHHHHHHHHHHHHHHHHHhh
Confidence 99998853 67788999999997 3 55899999999999875 344443 2 4555566677777665
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.58 E-value=7e-13 Score=98.58 Aligned_cols=107 Identities=22% Similarity=0.266 Sum_probs=88.3
Q ss_pred eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEE
Q 030045 5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYIT 84 (183)
Q Consensus 5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~ 84 (183)
.+++.++.|++||++||.++.|+ ..+++|+| .+.++++++++ ++|..+.+... + + ..+++++..++++++.+
T Consensus 2 ~~~~~~~~v~a~~e~V~~~l~d~-~~~~~w~~-~~~~~~~~~~~--~~~~~~~~~~~--g-~-~~~~~~i~~~~~~~~~~ 73 (139)
T PF10604_consen 2 FKVEVSIEVPAPPEAVWDLLSDP-ENWPRWWP-GVKSVELLSGG--GPGTERTVRVA--G-R-GTVREEITEYDPEPRRI 73 (139)
T ss_dssp EEEEEEEEESS-HHHHHHHHTTT-TGGGGTST-TEEEEEEEEEC--STEEEEEEEEC--S-C-SEEEEEEEEEETTTTEE
T ss_pred EEEEEEEEECCCHHHHHHHHhCh-hhhhhhhh-ceEEEEEcccc--ccceeEEEEec--c-c-cceeEEEEEecCCCcEE
Confidence 47899999999999999999987 67899999 79999988743 45666666644 4 2 48999999999889999
Q ss_pred EEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEe
Q 030045 85 IFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEK 127 (183)
Q Consensus 85 ~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~ 127 (183)
.|++. .. ++..+..++++.|. ++||.++|+.+|+.
T Consensus 74 ~~~~~-~~----~~~~~~~~~~~~~~---~~gt~v~~~~~~~~ 108 (139)
T PF10604_consen 74 TWRFV-PS----GFTNGTGRWRFEPV---GDGTRVTWTVEFEP 108 (139)
T ss_dssp EEEEE-SS----SSCEEEEEEEEEEE---TTTEEEEEEEEEEE
T ss_pred EEEEE-ec----ceeEEEEEEEEEEc---CCCEEEEEEEEEEE
Confidence 99996 22 56688999999997 55699999999998
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.51 E-value=1.5e-12 Score=98.41 Aligned_cols=135 Identities=16% Similarity=0.168 Sum_probs=92.5
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecC----CCcceEEEEEEeecCCce
Q 030045 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYA----GNPQIVKELIEVVDDENY 82 (183)
Q Consensus 7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~g----g~~~~~kErl~~iD~~~~ 82 (183)
++.++.|++||++||+++.|+ ..+|+|+| .+++++++++.+ .+........ .+ .-...+..++.+.++.++
T Consensus 1 ~~~~~~i~a~~~~Vw~~l~D~-~~~~~w~p-~v~~~~~l~~~~--~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~ 75 (144)
T cd08866 1 VVARVRVPAPPETVWAVLTDY-DNLAEFIP-NLAESRLLERNG--NRVVLEQTGK-QGILFFKFEARVVLELREREEFPR 75 (144)
T ss_pred CeEEEEECCCHHHHHHHHhCh-hhHHhhCc-CceEEEEEEcCC--CEEEEEEeee-EEEEeeeeeEEEEEEEEEecCCCc
Confidence 357899999999999999998 56799999 699999987652 2221111100 00 001245666777777788
Q ss_pred EEEEEEEeccccccceEEEEEEEEEEeeeCCC-CCeEEEEEEEEEecCCCCCCchHH--HHHHHHHHHHHHHHHH
Q 030045 83 ITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHE-GGSLVRFTYKYEKQNENVPDLESK--VLEMMIDIVKNIDAYI 154 (183)
Q Consensus 83 ~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~-ggs~v~W~~~ye~~~~~~~~p~~~--~~~~~~~~~k~ie~yL 154 (183)
.+.|++++|+ +..|.+++++.|. + + ++|.++|.++|++... .|.+..+ ..+....+++.|.+.+
T Consensus 76 ~i~~~~~~g~-----~~~~~g~w~~~~~-~-~~~~t~v~~~~~~~~~~~-~p~~l~~~~~~~~~~~~l~~lr~~a 142 (144)
T cd08866 76 ELDFEMVEGD-----FKRFEGSWRLEPL-A-DGGGTLLTYEVEVKPDFF-APVFLVEFVLRQDLPTNLLAIRAEA 142 (144)
T ss_pred eEEEEEcCCc-----hhceEEEEEEEEC-C-CCCeEEEEEEEEEEeCCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999876 4588999999997 3 4 6899999999998763 2333322 3344456666655443
No 6
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.45 E-value=8.2e-12 Score=92.56 Aligned_cols=108 Identities=17% Similarity=0.166 Sum_probs=85.6
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEEE
Q 030045 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIF 86 (183)
Q Consensus 7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~y 86 (183)
++.++.|++|+++||.++.|+ ..+|+|.| .+.+++.+.++..++|+...+... .++..-.+++++...| .++.+.|
T Consensus 1 ~~~~~~i~ap~~~Vw~~l~d~-~~~~~w~~-~~~~~~~~~~~~~~~g~~~~~~~~-~~g~~~~~~~~v~~~~-p~~~~~~ 76 (140)
T cd08865 1 VEESIVIERPVEEVFAYLADF-ENAPEWDP-GVVEVEKITDGPVGVGTRYHQVRK-FLGRRIELTYEITEYE-PGRRVVF 76 (140)
T ss_pred CceEEEEcCCHHHHHHHHHCc-cchhhhcc-CceEEEEcCCCCCcCccEEEEEEE-ecCceEEEEEEEEEec-CCcEEEE
Confidence 367899999999999999998 57899999 578888875543578999888765 3443346789999888 4578899
Q ss_pred EEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEe
Q 030045 87 KLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEK 127 (183)
Q Consensus 87 ~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~ 127 (183)
....|++ .+..++++.|. ++||.++|+.+|+.
T Consensus 77 ~~~~~~~------~~~~~~~~~~~---~~~t~v~~~~~~~~ 108 (140)
T cd08865 77 RGSSGPF------PYEDTYTFEPV---GGGTRVRYTAELEP 108 (140)
T ss_pred EecCCCc------ceEEEEEEEEc---CCceEEEEEEEEcc
Confidence 8876543 36789999996 55799999999987
No 7
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.45 E-value=1.3e-11 Score=92.19 Aligned_cols=112 Identities=19% Similarity=0.151 Sum_probs=81.4
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEE
Q 030045 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITI 85 (183)
Q Consensus 6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~ 85 (183)
+++.++.|++||++||+++.|+ ..+|+|+| .+.++++++++.++.+....+++. .++-.....-+++ .++ .+.++
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~D~-~~~~~w~p-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~-~~~i~ 77 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLADV-EAYPEWSP-KVKSVEVLLRDNDGRPEMVRIGVG-AYGIKDTYALEYT-WDG-AGSVS 77 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHhCh-hhhhhhCc-ceEEEEEeccCCCCCEEEEEEEEe-eeeEEEEEEEEEE-EcC-CCcEE
Confidence 6889999999999999999998 67899999 699999876642333334444444 2221112222332 223 67899
Q ss_pred EEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecC
Q 030045 86 FKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQN 129 (183)
Q Consensus 86 y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~ 129 (183)
|+..+|. +..++..++++.|. ++||.|+|+.+++...
T Consensus 78 ~~~~~~~----~~~~~~~~~~~~~~---~~~t~vt~~~~~~~~~ 114 (140)
T cd07819 78 WTLVEGE----GNRSQEGSYTLTPK---GDGTRVTFDLTVELTV 114 (140)
T ss_pred EEEeccc----ceeEEEEEEEEEEC---CCCEEEEEEEEEEecC
Confidence 9999876 46688899999997 5589999999999865
No 8
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.36 E-value=4.2e-11 Score=90.29 Aligned_cols=113 Identities=18% Similarity=0.227 Sum_probs=82.2
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEEE
Q 030045 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIF 86 (183)
Q Consensus 7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~y 86 (183)
++.+++|++|+++||+++.|+ ..+|+|+|. .+++.++++ +....++.+... .+|..... +....+|++.+++.|
T Consensus 1 ~~~s~~i~ap~~~V~~~l~D~-~~~p~~~p~--~~~~~~~~~-~~~~~~~~~~~~-~~g~~~~~-~~~~~~~~~~~~i~~ 74 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLADA-ERWPEFLPT--VHVERLELD-GGVERLRMWATA-FDGSVHTW-TSRRVLDPEGRRIVF 74 (142)
T ss_pred CeEEEEEcCCHHHHHHHHHhH-HhhhccCCC--ceEEEEEEc-CCEEEEEEEEEc-CCCcEEEE-EEEEEEcCCCCEEEE
Confidence 468999999999999999998 568999995 666656543 222245545554 23322222 344567888889999
Q ss_pred EEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCC
Q 030045 87 KLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNE 130 (183)
Q Consensus 87 ~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~ 130 (183)
..+++.. .+..+..++++.|. + +++|.|+|+.+|+..+.
T Consensus 75 ~~~~~~~---~~~~~~g~w~~~~~-~-~~~t~Vt~~~~~~~~~~ 113 (142)
T cd08861 75 RQEEPPP---PVASMSGEWRFEPL-G-GGGTRVTLRHDFTLGID 113 (142)
T ss_pred EEeeCCC---ChhhheeEEEEEEC-C-CCcEEEEEEEEEEECCC
Confidence 9998543 46688899999997 3 47899999999998754
No 9
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.29 E-value=9.1e-11 Score=88.55 Aligned_cols=131 Identities=12% Similarity=0.120 Sum_probs=93.0
Q ss_pred EEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEEEE
Q 030045 8 EAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFK 87 (183)
Q Consensus 8 ~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~y~ 87 (183)
+.+++|++|++.||+++.|. ..+|+|+| .++++++++++ + .+....+.+. ..+....+..++. +++ ++++++.
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~-~~~~~~~p-~~~~~~vl~~~-~-~~~~~~~~~~-~~~~~~~~~~~~~-~~~-~~~i~~~ 74 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADV-ERYPEFLP-WCTASRVLERD-E-DELEAELTVG-FGGIRESFTSRVT-LVP-PESIEAE 74 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHH-HhhhhhcC-CccccEEEEcC-C-CEEEEEEEEe-eccccEEEEEEEE-ecC-CCEEEEE
Confidence 67899999999999999998 67899999 69999999876 3 4445555555 3332234445554 565 6688999
Q ss_pred EEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHH
Q 030045 88 LIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAY 153 (183)
Q Consensus 88 viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~y 153 (183)
.++|+ ++.+.+++++.|. + +|+|.|+|.++|++.+.- +.+.. . ..+....+++.+.+-
T Consensus 75 ~~~g~-----~~~~~g~w~~~p~-~-~~~T~v~~~~~~~~~~~l-~~~l~~~~~~~~~~~~l~~f~~~ 134 (138)
T cd07813 75 LVDGP-----FKHLEGEWRFKPL-G-ENACKVEFDLEFEFKSRL-LEALAGLVFDEVAKKMVDAFEKR 134 (138)
T ss_pred ecCCC-----hhhceeEEEEEEC-C-CCCEEEEEEEEEEECCHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88884 4578899999997 3 678999999999997632 22221 1 334445555555443
No 10
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.23 E-value=1.4e-09 Score=81.05 Aligned_cols=106 Identities=15% Similarity=0.068 Sum_probs=78.6
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEE
Q 030045 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITI 85 (183)
Q Consensus 6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~ 85 (183)
+++.++.|+||+++||+++.|+ ..+|+|+| .++++++..+. .++|+...++.. ++ ..+..++.++++.+ +++
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~-~~~~~w~~-~~~~~~~~~~~-~~~G~~~~~~~~--~~--~~~~~~i~~~~p~~-~~~ 73 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDV-ENWPAWTP-SVETVRLEGPP-PAVGSSFKMKPP--GL--VRSTFTVTELRPGH-SFT 73 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhh-hhcccccC-cceEEEEecCC-CCCCcEEEEecC--CC--CceEEEEEEecCCC-EEE
Confidence 5788999999999999999997 57899999 68999987553 277876655533 22 35678888888655 577
Q ss_pred EEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEe
Q 030045 86 FKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEK 127 (183)
Q Consensus 86 y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~ 127 (183)
++... + ...+..++++.|. + +++|.++|+.+|..
T Consensus 74 ~~~~~-~-----~~~~~~~~~~~~~-~-~~~t~l~~~~~~~~ 107 (138)
T cd08862 74 WTGPA-P-----GISAVHRHEFEAK-P-DGGVRVTTSESLSG 107 (138)
T ss_pred EEecC-C-----CEEEEEEEEEEEc-C-CCcEEEEEEEEeec
Confidence 76543 2 1244578899886 2 47899999888764
No 11
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.23 E-value=9.4e-10 Score=79.21 Aligned_cols=113 Identities=20% Similarity=0.225 Sum_probs=87.3
Q ss_pred EEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEEEE
Q 030045 8 EAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFK 87 (183)
Q Consensus 8 ~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~y~ 87 (183)
+.++.|++|+++||+++.|+ ..+++|+| .+.++++.++.....|....+.+. .+ ....++.++..+++ +..++|+
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~v~~~~~-~~~~~~~ 76 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDP-ERWPEWSP-GLERVEVLGGGEGGVGARFVGGRK-GG-RRLTLTSEVTEVDP-PRPGRFR 76 (141)
T ss_pred cEEEEeCCCHHHHHHHHhCh-hhhhhhCc-ccceEEEcCCCCccceeEEEEEec-CC-ccccceEEEEEecC-CCceEEE
Confidence 57899999999999999987 67899999 588888887653466666666553 12 22467888888877 6788999
Q ss_pred EEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCC
Q 030045 88 LIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNEN 131 (183)
Q Consensus 88 viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~ 131 (183)
...++.. ..+..++++.+. + +++|.++|+.++......
T Consensus 77 ~~~~~~~----~~~~~~~~~~~~-~-~~~t~v~~~~~~~~~~~~ 114 (141)
T cd07812 77 VTGGGGG----VDGTGEWRLEPE-G-DGGTRVTYTVEYDPPGPL 114 (141)
T ss_pred EecCCCC----cceeEEEEEEEC-C-CCcEEEEEEEEEecCCcc
Confidence 9887752 578889999997 2 338999999999987654
No 12
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.22 E-value=2.1e-09 Score=79.77 Aligned_cols=110 Identities=16% Similarity=0.115 Sum_probs=82.0
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecC-CCcceEEEEEEeecCCceEEE
Q 030045 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYA-GNPQIVKELIEVVDDENYITI 85 (183)
Q Consensus 7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~g-g~~~~~kErl~~iD~~~~~~~ 85 (183)
++.++.|++|+++||+++.|+ ..+|+|+| .+..++... ..+|+...+.+. .+ +....+.+++.++|+. +++.
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~-~~~~~w~~-~~~~~~~~~---~~~G~~~~~~~~-~~~~~~~~~~~~v~~~~p~-~~~~ 74 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDF-PSYPEWNP-FVRSATGLS---LALGARLRFVVK-LPGGPPRSFKPRVTEVEPP-RRLA 74 (141)
T ss_pred eEEEEEecCCHHHHHHHHhcc-ccccccCh-hheeEeccc---cCCCCEEEEEEe-CCCCCcEEEEEEEEEEcCC-CEeE
Confidence 678999999999999999997 67899999 566665431 356777777765 33 2335688889999874 5889
Q ss_pred EEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEec
Q 030045 86 FKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQ 128 (183)
Q Consensus 86 y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~ 128 (183)
|+...++. .......++++.|. + +++|.++|+..|...
T Consensus 75 ~~~~~~~~---~~~~~~~~~~~~~~-~-~~~T~~~~~~~~~g~ 112 (141)
T cd07822 75 WRGGLPFP---GLLDGEHSFELEPL-G-DGGTRFVHRETFSGL 112 (141)
T ss_pred EEecCCCC---cEeeEEEEEEEEEc-C-CCcEEEEEeeEEEEE
Confidence 99877653 22346678899996 3 678999998877643
No 13
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.11 E-value=8e-09 Score=80.01 Aligned_cols=114 Identities=15% Similarity=0.130 Sum_probs=82.8
Q ss_pred eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCc-ceEEEEEEeecCCceE
Q 030045 5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEVVDDENYI 83 (183)
Q Consensus 5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~-~~~kErl~~iD~~~~~ 83 (183)
|..+++|+|++||++||+++.|. ...|.|+| .++++++++.++.+.|+--++.+. .+|.. ++..++. +|...++
T Consensus 1 ~~~~~si~i~a~~~~v~~lvaDv-~~~P~~~~-~~~~~~~l~~~~~~~~~r~~i~~~-~~g~~~~w~s~~~--~~~~~~~ 75 (146)
T cd08860 1 GRTDNSIVIDAPLDLVWDMTNDI-ATWPDLFS-EYAEAEVLEEDGDTVRFRLTMHPD-ANGTVWSWVSERT--LDPVNRT 75 (146)
T ss_pred CcceeEEEEcCCHHHHHHHHHhh-hhhhhhcc-ceEEEEEEEecCCeEEEEEEEEec-cCCEEEEEEEEEE--ecCCCcE
Confidence 45689999999999999999987 57899999 699999987653455533223333 23322 3334432 6888888
Q ss_pred EEEE-EEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCC
Q 030045 84 TIFK-LIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNEN 131 (183)
Q Consensus 84 ~~y~-viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~ 131 (183)
+.+. ...| ++.+....++++|. ++||.|++..+|+..++.
T Consensus 76 i~~~~~~~~-----p~~~m~~~W~f~~~---~~gT~V~~~~~~~~~~~~ 116 (146)
T cd08860 76 VRARRVETG-----PFAYMNIRWEYTEV---PEGTRMRWVQDFEMKPGA 116 (146)
T ss_pred EEEEEecCC-----CcceeeeeEEEEEC---CCCEEEEEEEEEEECCCC
Confidence 8874 2222 47788899999997 456999999999987644
No 14
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.11 E-value=2.6e-09 Score=79.48 Aligned_cols=134 Identities=11% Similarity=0.089 Sum_probs=87.8
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEEE
Q 030045 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIF 86 (183)
Q Consensus 7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~y 86 (183)
++.+++|+||+++||+++.|+ ..+|+|+|. +..+. +++..-|+.+.+... .++....+..++..+|+. +.+.|
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~-~~~~~w~~~-~~~~~---~~~~~Gg~~~~~~~~-~~g~~~~~~~~i~~~~~~-~~i~~ 74 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDP-ELLAQWFGP-TTTAE---MDLRVGGRWFFFMTG-PDGEEGWVSGEVLEVEPP-RRLVF 74 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCH-HHHHhhhCc-CCceE---EcccCCceEEEEEEC-CCCCEEeccEEEEEEcCC-CeEEE
Confidence 678999999999999999987 678999995 22222 221111666655443 333334688899999865 67999
Q ss_pred EEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHH
Q 030045 87 KLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYI 154 (183)
Q Consensus 87 ~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yL 154 (183)
+...++. + +.-....++++.|. +++|.++|+.+|...... .+.. . .......++..|.+||
T Consensus 75 ~~~~~~~-~-~~~~~~~~~~~~~~---~~~T~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~lk~~~ 137 (139)
T cd07814 75 TWAFSDE-T-PGPETTVTVTLEET---GGGTRLTLTHSGFPEEDA--EQEAREGMEEGWTGTLDRLKALL 137 (139)
T ss_pred EecccCC-C-CCCceEEEEEEEEC---CCCEEEEEEEEccChHhH--HHHHHhCHhhHHHHHHHHHHHHh
Confidence 9887653 1 12356788999997 567999999998875321 1111 1 3334445555555554
No 15
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.10 E-value=1.3e-08 Score=77.79 Aligned_cols=109 Identities=14% Similarity=0.159 Sum_probs=78.9
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEc-CCCCCCccEEEEEEeecCCCc-ceEEEEEEeecCCceEE
Q 030045 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIE-GEWGKPGAVICWTFTRYAGNP-QIVKELIEVVDDENYIT 84 (183)
Q Consensus 7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~e-Gd~g~~GsiR~~~~~~~gg~~-~~~kErl~~iD~~~~~~ 84 (183)
++.+..|++||++||+++.|. ..+|+|+| .++++++++ |++.++|+..++... ...+. ..+.-++... +..+.+
T Consensus 3 ~~~~~~i~ap~e~Vw~~~tD~-~~~~~w~~-~v~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~v~~~-~p~~~~ 78 (146)
T cd07824 3 FHTVWRIPAPPEAVWDVLVDA-ESWPDWWP-GVERVVELEPGDEAGIGARRRYTWR-GLLPYRLRFELRVTRI-EPLSLL 78 (146)
T ss_pred ceEEEEecCCHHHHHHHHhCh-hhcchhhh-ceEEEEEccCCCCCCcceEEEEEEE-ecCCcEEEEEEEEEee-cCCcEE
Confidence 567889999999999999987 67899999 699999887 333577777655543 22121 2345555554 456678
Q ss_pred EEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecC
Q 030045 85 IFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQN 129 (183)
Q Consensus 85 ~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~ 129 (183)
.|.. +|++ ....++++.|. ++||.|+++.+++..+
T Consensus 79 ~~~~-~g~~------~~~~~~~~~~~---~~gt~vt~~~~~~~~~ 113 (146)
T cd07824 79 EVRA-SGDL------EGVGRWTLAPD---GSGTVVRYDWEVRTTK 113 (146)
T ss_pred EEEE-EEee------eEEEEEEEEEc---CCCEEEEEEEEEEcCH
Confidence 8874 6663 22578899996 5689999999999755
No 16
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.09 E-value=6.8e-09 Score=77.67 Aligned_cols=112 Identities=11% Similarity=0.062 Sum_probs=76.1
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCC--CcceEEEEEEeecCCceE
Q 030045 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAG--NPQIVKELIEVVDDENYI 83 (183)
Q Consensus 6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg--~~~~~kErl~~iD~~~~~ 83 (183)
+++.++.+++|+++||+++.|. ..+++|+| .++++++++++ .... .+++. .+. ..-..+-++..+|+. +.
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~D~-~~~~~w~p-~~~~~~~~~~~--~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~-~~ 73 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALNDP-EVLARCIP-GCESLEKIGPN--EYEA--TVKLK-VGPVKGTFKGKVELSDLDPP-ES 73 (144)
T ss_pred eeeeEEEecCCHHHHHHHhcCH-HHHHhhcc-chhhccccCCC--eEEE--EEEEE-EccEEEEEEEEEEEEecCCC-cE
Confidence 4678999999999999999987 67899999 58888876543 1111 12222 111 011234566655554 56
Q ss_pred EEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCC
Q 030045 84 TIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNE 130 (183)
Q Consensus 84 ~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~ 130 (183)
+.++....+. . ....+..++++.|. ++||.++|+++|+..+.
T Consensus 74 ~~~~~~~~~~-~-~~~~~~~~~~l~~~---~~gT~v~~~~~~~~~g~ 115 (144)
T cd05018 74 YTITGEGKGG-A-GFVKGTARVTLEPD---GGGTRLTYTADAQVGGK 115 (144)
T ss_pred EEEEEEEcCC-C-ceEEEEEEEEEEec---CCcEEEEEEEEEEEccC
Confidence 6666553222 1 35689999999996 67899999999997653
No 17
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.09 E-value=7.3e-09 Score=78.17 Aligned_cols=138 Identities=14% Similarity=0.116 Sum_probs=89.9
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCC-CCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEE
Q 030045 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGE-WGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITI 85 (183)
Q Consensus 7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd-~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~ 85 (183)
++.++.|+|||++||+++.|+ ..+|+|.|.... .....++ .-.+|+...+... ..+....+..++..+++.. +++
T Consensus 2 i~~~~~i~ap~e~Vw~~l~d~-~~~~~W~~~~~~-~~~~~~~~~~~~G~~~~~~~~-~~g~~~~~~~~v~~~~p~~-~l~ 77 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLADP-RRHPEIDGSGTV-REAIDGPRILAVGDVFRMAMR-LDGGPYRITNHVVAFEENR-LIA 77 (144)
T ss_pred eEEEEEEeCCHHHHHHHHhCc-cccceeCCCCcc-ccccCCCccCCCCCEEEEEEE-cCCCceEEEEEEEEECCCC-EEE
Confidence 678999999999999999987 678999984332 2222332 1478998888766 3333345667788877755 588
Q ss_pred EEEE-eccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHH
Q 030045 86 FKLI-EGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYI 154 (183)
Q Consensus 86 y~vi-EG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yL 154 (183)
|+.. .+.. ......++++.|. + +|+|+++++..|...+.....+.. . ........+..+++||
T Consensus 78 ~~~~~~~~~----~~~~~~~~~l~~~-~-~g~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~ 143 (144)
T cd07825 78 WRPGPAGQE----PGGHRWRWELEPI-G-PGRTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLA 143 (144)
T ss_pred EEccCCCCC----CCceeEEEEEEEC-C-CCcEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHh
Confidence 8853 2222 1234557888886 2 578999999988876442111111 1 3445566777777775
No 18
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.07 E-value=5.3e-09 Score=79.17 Aligned_cols=110 Identities=17% Similarity=0.211 Sum_probs=83.4
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCC--CCCccEEEEEEeecCCCcceEEEEEEeecCCceEE
Q 030045 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEW--GKPGAVICWTFTRYAGNPQIVKELIEVVDDENYIT 84 (183)
Q Consensus 7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~--g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~ 84 (183)
++.+++|++|+++||+.+.|. ..+|+|+| .+.++++++.+. ..+|+.-.+.+. ..+..-.++-+++.+++ ++.+
T Consensus 1 ~~~s~~I~ap~e~V~~~~~d~-~~~~~~~p-~~~~v~~~~~~~~~~~~G~~~~~~~~-~~~~~~~w~~~it~~~p-~~~f 76 (137)
T cd07820 1 LERSTVIPAPIEEVFDFHSRP-DNLERLTP-PWLEFAVLGRTPGLIYGGARVTYRLR-HFGIPQRWTTEITEVEP-PRRF 76 (137)
T ss_pred CeEEEEcCCCHHHHHHHHcCc-chHHhcCC-CCCCeEEEecCCCcccCCcEEEEEEE-ecCCceEEEEEEEEEcC-CCeE
Confidence 468899999999999999987 67899999 588899874321 246888888876 44422355777777654 5568
Q ss_pred EEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEec
Q 030045 85 IFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQ 128 (183)
Q Consensus 85 ~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~ 128 (183)
++..+.|. +..+..+..+.|. ++||.++++++|+..
T Consensus 77 ~~~~~~G~-----~~~w~h~~~f~~~---~~gT~vt~~v~~~~p 112 (137)
T cd07820 77 VDEQVSGP-----FRSWRHTHRFEAI---GGGTLMTDRVEYRLP 112 (137)
T ss_pred EEEeccCC-----chhCEEEEEEEEC---CCceEEEEEEEEeCC
Confidence 88877765 4467778888886 458999999999984
No 19
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.06 E-value=1e-08 Score=78.01 Aligned_cols=112 Identities=14% Similarity=0.004 Sum_probs=80.4
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceee---EEEE--cCCCCCCccEEEEEEeecCCCcceEEEEEEeecCC
Q 030045 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQS---CELI--EGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDE 80 (183)
Q Consensus 6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s---~e~~--eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~ 80 (183)
+++.++.|++|+++||+++.|+ ..+|+|+|. +.. ++.. +++ .++|+...++.. .+ ......++..+++
T Consensus 3 ~~~~s~~I~ap~e~V~~~i~D~-~~~~~W~p~-~~~~~~~~~~~~~~~-~~~G~~~~~~~~-~~--~~~~~~~v~~~~p- 75 (150)
T cd07818 3 RVERSIVINAPPEEVFPYVNDL-KNWPEWSPW-EKLDPDMKRTYSGPD-SGVGASYSWEGN-DK--VGEGEMEITESVP- 75 (150)
T ss_pred EEEEEEEEeCCHHHHHHHHhCc-ccCcccCch-hhcCcceEEEecCCC-CCCCeEEEEecC-Cc--ccceEEEEEecCC-
Confidence 6789999999999999999987 678999993 433 2221 233 468888777654 31 1134556777764
Q ss_pred ceEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCC
Q 030045 81 NYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNE 130 (183)
Q Consensus 81 ~~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~ 130 (183)
++++.|++..++.+ . ..+..++++.|. ++||.++|+.+|+..+.
T Consensus 76 ~~~i~~~~~~~~~~--~-~~~~~~~~~~~~---~~gT~v~~~~~~~~~~~ 119 (150)
T cd07818 76 NERIEYELRFIKPF--E-ATNDVEFTLEPV---GGGTKVTWGMSGELPFP 119 (150)
T ss_pred CcEEEEEEEecCCc--c-ccceEEEEEEEc---CCceEEEEEEEecCCch
Confidence 56799998864432 1 367899999997 66899999999987654
No 20
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.01 E-value=2.3e-08 Score=74.50 Aligned_cols=107 Identities=17% Similarity=0.208 Sum_probs=77.7
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEEE
Q 030045 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIF 86 (183)
Q Consensus 7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~y 86 (183)
++.+++|++|+++||+++.|+ ..+|+|.| .+++++++.|. +. .+++....|....+..++..+++.. .+.|
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~-~~~~~w~~-~~~~~~~~~~~----~~--~~~~~~~~g~~~~~~~~v~~~~~~~-~i~~ 72 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDF-ENLPRFMS-HVESVEQLDDT----RS--HWKAKGPAGLSVEWDAEITEQVPNE-RIAW 72 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhCh-hhhHHHhh-hhcEEEEcCCC----ce--EEEEecCCCCcEEEEEEEeccCCCC-EEEE
Confidence 678999999999999999987 67899999 68999987542 22 2333312244446677776655544 5899
Q ss_pred EEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCC
Q 030045 87 KLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNE 130 (183)
Q Consensus 87 ~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~ 130 (183)
....|. + .+..++++.|. + +++|.+++++.|++...
T Consensus 73 ~~~~~~-----~-~~~~~~~f~~~-~-~~~T~vt~~~~~~~~~~ 108 (139)
T cd07817 73 RSVEGA-----D-PNAGSVRFRPA-P-GRGTRVTLTIEYEPPGG 108 (139)
T ss_pred EECCCC-----C-CcceEEEEEEC-C-CCCeEEEEEEEEECCcc
Confidence 876654 2 45678889886 3 55899999999998653
No 21
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=98.99 E-value=4.8e-08 Score=72.54 Aligned_cols=108 Identities=24% Similarity=0.376 Sum_probs=78.1
Q ss_pred EcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEEEEEEecc
Q 030045 13 VKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFKLIEGN 92 (183)
Q Consensus 13 i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~y~viEG~ 92 (183)
|++||++||.++.|. ..+|+|+| .++++++++.+ +. +..-.+... .++....+..++....+.. +.+..++|+
T Consensus 1 V~ap~~~V~~~i~D~-e~~~~~~p-~~~~v~vl~~~-~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~g~ 73 (130)
T PF03364_consen 1 VNAPPEEVWSVITDY-ENYPRFFP-PVKEVRVLERD-GD-GMRARWEVK-FGGIKRSWTSRVTEDPPER--IRFEQISGP 73 (130)
T ss_dssp ESS-HHHHHHHHTTG-GGHHHHCT-TEEEEEEEEEE-CC-EEEEEEEEC-TTTTCEEEEEEEEEECTTT--EEEESSETT
T ss_pred CCCCHHHHHHHHHHH-HHHHHhCC-CCceEEEEEeC-CC-eEEEEEEEe-cCCEEEEEEEEEEEEEeee--eeeeecCCC
Confidence 689999999999987 67899999 69999999876 33 434455555 3443345666666544444 777777765
Q ss_pred ccccceEEEEEEEEEEeeeCCCC---CeEEEEEEEEEecCCCCCCch
Q 030045 93 VLEMLYKSFCSVAKVTQKDDHEG---GSLVRFTYKYEKQNENVPDLE 136 (183)
Q Consensus 93 ~l~~~~~sy~~t~~v~p~~~~~g---gs~v~W~~~ye~~~~~~~~p~ 136 (183)
++.+..++++.|. ++ ||.++++.+|+..... +.+.
T Consensus 74 -----~~~~~g~W~~~~~---~~~~~g~~~~v~~~~~~~~~~-~~~~ 111 (130)
T PF03364_consen 74 -----FKSFEGSWRFEPL---GGNEGGTRTRVTYDYEVDPPG-PLPG 111 (130)
T ss_dssp -----EEEEEEEEEEEEE---TTECCEEEEEEEEEEEEETSS-SSHH
T ss_pred -----chhcEEEEEEEEC---CCCcCCCEEEEEEEEEEecCc-HhHH
Confidence 6799999999997 54 7888889998886544 4444
No 22
>PRK10724 hypothetical protein; Provisional
Probab=98.90 E-value=5.3e-08 Score=76.62 Aligned_cols=110 Identities=15% Similarity=0.216 Sum_probs=82.1
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEE
Q 030045 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITI 85 (183)
Q Consensus 6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~ 85 (183)
++..++.+++||+++|+++.|. ...|+|+| ..+++++++-+.+ +.+..++.. -+|-......|+. +++. +++.
T Consensus 16 ~i~~~~~v~~s~~~v~~lv~Dv-e~yp~flp-~~~~s~vl~~~~~--~~~a~l~v~-~~g~~~~f~srv~-~~~~-~~I~ 88 (158)
T PRK10724 16 QISRTALVPYSAEQMYQLVNDV-QSYPQFLP-GCTGSRVLESTPG--QMTAAVDVS-KAGISKTFTTRNQ-LTSN-QSIL 88 (158)
T ss_pred eEEEEEEecCCHHHHHHHHHHH-HHHHHhCc-ccCeEEEEEecCC--EEEEEEEEe-eCCccEEEEEEEE-ecCC-CEEE
Confidence 6788999999999999999987 67899999 6888888865422 234444444 2333345555544 3443 4799
Q ss_pred EEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecC
Q 030045 86 FKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQN 129 (183)
Q Consensus 86 y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~ 129 (183)
+.+++|+ ++++.+.+++.|. + +++|.|++..+|+...
T Consensus 89 ~~~~~Gp-----F~~l~g~W~f~p~-~-~~~t~V~~~l~fef~s 125 (158)
T PRK10724 89 MQLVDGP-----FKKLIGGWKFTPL-S-QEACRIEFHLDFEFTN 125 (158)
T ss_pred EEecCCC-----hhhccceEEEEEC-C-CCCEEEEEEEEEEEch
Confidence 9999885 5689999999997 3 5679999999999755
No 23
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.76 E-value=4.9e-07 Score=69.03 Aligned_cols=113 Identities=11% Similarity=0.038 Sum_probs=71.9
Q ss_pred EEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceE--EEEEEeecCCceEEE
Q 030045 8 EAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIV--KELIEVVDDENYITI 85 (183)
Q Consensus 8 ~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~--kErl~~iD~~~~~~~ 85 (183)
+.++++++||+++|+++.|. ..++.|+| .+++++.+.++ .. ...+++. .++-...+ +=++..+++..+++.
T Consensus 2 ~~~~~v~a~pe~vw~~l~D~-~~~~~~~p-g~~~~~~~~~~--~~--~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (146)
T cd07823 2 ENEFTVPAPPDRVWALLLDI-ERVAPCLP-GASLTEVEGDD--EY--KGTVKVK-LGPISASFKGTARLLEDDEAARRAV 74 (146)
T ss_pred CceEEecCCHHHHHHHhcCH-HHHHhcCC-CceeccccCCC--eE--EEEEEEE-EccEEEEEEEEEEEEeccCCCcEEE
Confidence 56899999999999999986 67899999 58888865322 22 2223333 22111122 224556665677877
Q ss_pred EEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCC
Q 030045 86 FKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNE 130 (183)
Q Consensus 86 y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~ 130 (183)
++.-..+.-...--....++++.|. ++||.++|+++++..+.
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~l~~~---~~gT~v~~~~~~~~~g~ 116 (146)
T cd07823 75 LEATGKDARGQGTAEATVTLRLSPA---GGGTRVTVDTDLALTGK 116 (146)
T ss_pred EEEEEecCCCcceEEEEEEEEEEec---CCcEEEEEEEEEEEeeE
Confidence 7644311110012256678888884 67899999999987654
No 24
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.44 E-value=8.7e-06 Score=61.07 Aligned_cols=137 Identities=15% Similarity=0.111 Sum_probs=77.0
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEE
Q 030045 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITI 85 (183)
Q Consensus 6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~ 85 (183)
.++.+++|+||+++||+++.+. ..+++|.|... .....|. +..| .+.+. +.....+.-++..+++. +.+.
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~td~-~~~~~W~~~~~--~~~~~~~-~~~g---~~~~~--~~~~~~~~~~i~~~~p~-~~l~ 71 (145)
T cd08898 2 RIERTILIDAPRERVWRALTDP-EHFGQWFGVKL--GPFVVGE-GATG---EITYP--GYEHGVFPVTVVEVDPP-RRFS 71 (145)
T ss_pred eeEEEEEecCCHHHHHHHhcCh-hhhhhcccccC--CCcccCC-ccee---EEecC--CCCccceEEEEEEeCCC-cEEE
Confidence 5789999999999999999986 67899999532 1211122 1222 33333 22112455677777554 4556
Q ss_pred EEEEecc---ccc-cceEEEEEEEEEEeeeCCCCCeEEEEEEE-EEecCCCCCCchHH-HHHHHHHHHHHHHHHHh
Q 030045 86 FKLIEGN---VLE-MLYKSFCSVAKVTQKDDHEGGSLVRFTYK-YEKQNENVPDLESK-VLEMMIDIVKNIDAYII 155 (183)
Q Consensus 86 y~viEG~---~l~-~~~~sy~~t~~v~p~~~~~ggs~v~W~~~-ye~~~~~~~~p~~~-~~~~~~~~~k~ie~yLl 155 (183)
|+...+. ..+ ..-.....++++.|. ++||.|+++.. |...++........ ..+....++..+++||-
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~gT~vt~~~~~~~~~~~~~~~~~~~~~~~gw~~~l~~L~~~le 144 (145)
T cd08898 72 FRWHPPAIDPGEDYSAEPSTLVEFTLEPI---AGGTLLTVTESGFDALPAERRAEAYRMNEGGWDEQLENLVAYVE 144 (145)
T ss_pred EEecCCCcccccccCCCCceEEEEEEEec---CCcEEEEEEEcCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 6654322 000 011234578888896 66799998876 32221110000111 33444667777777763
No 25
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.41 E-value=4e-05 Score=58.19 Aligned_cols=138 Identities=11% Similarity=0.025 Sum_probs=80.3
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCCccccccCC-ceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEE
Q 030045 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQ-SVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITI 85 (183)
Q Consensus 7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~-~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~ 85 (183)
+..+..+++|+++||+++.+- ..+.+|+.. .--.++..+.| -.+|..-.+.+...++......=++.++|+.++ +.
T Consensus 2 ~~i~r~~~ap~e~Vw~a~tdp-~~l~~W~~~~~~~~~~~~~~d-~~~Gg~~~~~~~~~~g~~~~~~g~~~~~~p~~~-l~ 78 (143)
T cd08900 2 FTLERTYPAPPERVFAAWSDP-AARARWFVPSPDWTVLEDEFD-FRVGGREVSRGGPKGGPEITVEARYHDIVPDER-IV 78 (143)
T ss_pred EEEEEEeCCCHHHHHHHhcCH-HHHHhcCCCCCCCceeeeEEe-cCCCCEEEEEEECCCCCEEeeeEEEEEecCCce-EE
Confidence 567788999999999999974 678899853 11122333334 244444444443134433345667777876544 44
Q ss_pred EE--EEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHh
Q 030045 86 FK--LIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYII 155 (183)
Q Consensus 86 y~--viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~~k~ie~yLl 155 (183)
|+ .-.++. +......++++.|. ++||.++.+..+-..++. ..... .......++..|++||-
T Consensus 79 ~t~~~~~~~~---~~~~s~v~~~l~~~---~~gT~l~~~~~~~~~~~~-~~~~~-~~~GW~~~l~~L~~~l~ 142 (143)
T cd08900 79 YTYTMHIGGT---LLSASLATVEFAPE---GGGTRLTLTEQGAFLDGD-DDPAG-REQGTAALLDNLAAELE 142 (143)
T ss_pred EEEeeccCCc---cccceEEEEEEEEC---CCCEEEEEEEEEeccccc-chhhh-HHHHHHHHHHHHHHHHh
Confidence 44 333332 11123478888886 678988887775322221 11112 44555778888888873
No 26
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.38 E-value=9.4e-06 Score=60.12 Aligned_cols=132 Identities=9% Similarity=-0.043 Sum_probs=77.3
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEE
Q 030045 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITI 85 (183)
Q Consensus 6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~ 85 (183)
|++.++.|++||++||+++.|. ..+++|.+... ..++ -.+|.--.+... .. ....+.-++.+++ .++.+.
T Consensus 1 ~~~~~~~i~ap~e~Vw~~~td~-~~~~~W~~~~~-----~~~~-~~~G~~~~~~~~-~~-~~~~~~~~v~~~~-~~~~l~ 70 (136)
T cd08893 1 KFVYVTYIRATPEKVWQALTDP-EFTRQYWGGTT-----VESD-WKVGSAFEYRRG-DD-GTVDVEGEVLESD-PPRRLV 70 (136)
T ss_pred CeEEEEEecCCHHHHHHHHcCc-hhhhheecccc-----cccC-CcCCCeEEEEeC-CC-cccccceEEEEec-CCCeEE
Confidence 5788999999999999999986 67899998522 2334 244544344333 21 1123556677776 445566
Q ss_pred EEEEecccc-ccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHH-HHHHHHHHHHHHHHHH
Q 030045 86 FKLIEGNVL-EMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESK-VLEMMIDIVKNIDAYI 154 (183)
Q Consensus 86 y~viEG~~l-~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~-~~~~~~~~~k~ie~yL 154 (183)
|+-..+... ...-.....++.+.|. +++|+++.+.+-...+. ...+ .......+++.|.+||
T Consensus 71 ~~~~~~~~~~~~~~~~~~v~~~l~~~---~~~t~l~~~~~~~~~~~----~~~~~~~~gw~~~l~~Lk~~~ 134 (136)
T cd08893 71 HTWRAVWDPEMAAEPPSRVTFEIEPV---GDVVKLTVTHDGFPPGS----PTLEGVSGGWPAILSSLKTLL 134 (136)
T ss_pred EEEecCCCcccCCCCCEEEEEEEEec---CCcEEEEEEecCCCCch----hHHHhhhcCHHHHHHHHHHHh
Confidence 665432221 0012356678888886 55777666655322111 1112 4445567777777776
No 27
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.38 E-value=1.1e-05 Score=62.54 Aligned_cols=129 Identities=10% Similarity=0.013 Sum_probs=85.1
Q ss_pred eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEE
Q 030045 5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYIT 84 (183)
Q Consensus 5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~ 84 (183)
-+++.++.|++|+++||+++.|. ..+++|.|. . .++ -.+|....+.+. ..+ ...+..++..+|+. +++
T Consensus 11 ~~i~~~~~i~Ap~e~Vw~altdp-~~~~~W~~~-~------~~~-~~~G~~~~~~~~-~~~-~~~~~~~v~e~~p~-~~l 78 (157)
T cd08899 11 ATLRFERLLPAPIEDVWAALTDP-ERLARWFAP-G------TGD-LRVGGRVEFVMD-DEE-GPNATGTILACEPP-RLL 78 (157)
T ss_pred eEEEEEEecCCCHHHHHHHHcCH-HHHHhhcCC-C------CCC-cccCceEEEEec-CCC-CCccceEEEEEcCC-cEE
Confidence 46889999999999999999986 678999993 2 133 355655555554 321 13567788777666 566
Q ss_pred EEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHhhCh
Q 030045 85 IFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYIIQHE 158 (183)
Q Consensus 85 ~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~~k~ie~yLl~~~ 158 (183)
.|+...++. ....++++.+. ++||.++.+.++.+.. ..... ..+....++..+.+||-..+
T Consensus 79 ~~~~~~~~~------~~~~~~~l~~~---~~gT~v~~~~~~~~~~---~~~~~-~~~GW~~~L~~Lk~~~e~~~ 139 (157)
T cd08899 79 AFTWGEGGG------ESEVRFELAPE---GDGTRLTLTHRLLDER---FGAGA-VGAGWHLCLDVLEAALEGGP 139 (157)
T ss_pred EEEecCCCC------CceEEEEEEEc---CCCEEEEEEEeccCch---hhhhh-hcccHHHHHHHHHHHHcCCC
Confidence 777654431 23557778885 5678888777764432 11111 44455777888888887665
No 28
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.25 E-value=0.00011 Score=55.97 Aligned_cols=137 Identities=11% Similarity=0.050 Sum_probs=79.1
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCCccccccCC-ceeeEEEEcCCCCCCccEEEEEEee-c------CCCcceEEEEEEee
Q 030045 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQ-SVQSCELIEGEWGKPGAVICWTFTR-Y------AGNPQIVKELIEVV 77 (183)
Q Consensus 6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~-~v~s~e~~eGd~g~~GsiR~~~~~~-~------gg~~~~~kErl~~i 77 (183)
+++.+..|+||+++||+++.|. ..+.+|.+. .+. +.+...+ -.+|-.-.+.+.. . .+....++-++.++
T Consensus 1 ~~~~~r~i~ap~e~Vw~a~td~-~~~~~W~~p~~~~-~~~~~~d-~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v 77 (146)
T cd08895 1 TDRLHRVIAAPPERVYRAFLDP-DALAKWLPPDGMT-GTVHEFD-AREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLEL 77 (146)
T ss_pred CEEEEEEECCCHHHHHHHHcCH-HHHhhcCCCCCeE-eEEEEEe-cccCCeEEEEEEcCCccccccCCcEeeeEEEEEEE
Confidence 3677889999999999999975 678898862 222 2222233 2333333333321 2 12223455678888
Q ss_pred cCCceEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHh
Q 030045 78 DDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYII 155 (183)
Q Consensus 78 D~~~~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~~k~ie~yLl 155 (183)
++.+ ++.|+..-.+... + .....++++.+. +++|.++++...- +.. ..... ..+....++..+++||-
T Consensus 78 ~p~~-~i~~~~~~~~~~~-~-~~~~v~~~~~~~---~~~T~lt~~~~~~--~~~-~~~~~-~~~GW~~~l~~L~~~le 145 (146)
T cd08895 78 VPNE-RIVYTDVFDDPSL-S-GEMTMTWTLSPV---SGGTDVTIVQSGI--PDG-IPPED-CELGWQESLANLAALVE 145 (146)
T ss_pred cCCC-EEEEEEEecCCCC-C-ceEEEEEEEEec---CCCEEEEEEEeCC--Cch-hhhhH-HHHHHHHHHHHHHHHhc
Confidence 6665 4555532122110 1 234678888886 6789888887632 211 11122 55666788888888873
No 29
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.25 E-value=3.9e-05 Score=58.46 Aligned_cols=137 Identities=13% Similarity=0.092 Sum_probs=80.4
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCce-EEE
Q 030045 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENY-ITI 85 (183)
Q Consensus 7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~-~~~ 85 (183)
++.+..+++|+++||+++-+- ..+.+|....--.+...+.| -.+|..-.+.+...+|....+.-++.++++.++ .++
T Consensus 2 l~i~r~~~ap~e~Vw~a~Tdp-e~l~~W~~p~~~~~~~~~~d-~r~GG~~~~~~~~~~g~~~~~~g~~~ei~p~~~l~~t 79 (142)
T cd07826 2 IVITREFDAPRELVFRAHTDP-ELVKRWWGPRGLTMTVCECD-IRVGGSYRYVHRAPDGEEMGFHGVYHEVTPPERIVQT 79 (142)
T ss_pred EEEEEEECCCHHHHHHHhCCH-HHHhhccCCCCCcceEEEEe-ccCCCEEEEEEECCCCCEecceEEEEEEcCCCEEEEE
Confidence 567889999999999999974 67889986442233334445 244545455543123332345567777876543 334
Q ss_pred EEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHHh
Q 030045 86 FKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYII 155 (183)
Q Consensus 86 y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yLl 155 (183)
+.. ++.. + .....++++.|. ++||.++.+..|..... ..... . ..+.....+..+++||.
T Consensus 80 ~~~-~~~~-~---~~s~v~~~l~~~---~~gT~l~l~~~~~~~~~--~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 80 EEF-EGLP-D---GVALETVTFTEL---GGRTRLTATSRYPSKEA--RDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred eEe-cCCC-C---CceEEEEEEEEC---CCCEEEEEEEEeCCHHH--HHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 443 3321 1 134568888886 67899888766432110 00011 1 34455778888888885
No 30
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.22 E-value=0.00014 Score=55.53 Aligned_cols=106 Identities=20% Similarity=0.144 Sum_probs=66.1
Q ss_pred EEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCc---ceEEEEEEeecCCceEE-E
Q 030045 10 VIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP---QIVKELIEVVDDENYIT-I 85 (183)
Q Consensus 10 ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~---~~~kErl~~iD~~~~~~-~ 85 (183)
+.+|++|++++|++|.|. ..+-+.+| -+++++.+. + .-.+. ++.. -| +. -..+=++..+|+.++.. .
T Consensus 2 s~~v~a~~~~vw~~l~D~-~~l~~ciP-G~~~~e~~~-~-~~~~~---~~v~-vG-~i~~~~~g~~~~~~~~~~~~~~~~ 72 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSDP-ENLARCIP-GVESIEKVG-D-EYKGK---VKVK-VG-PIKGTFDGEVRITEIDPPESYTLE 72 (140)
T ss_dssp EEEECS-HHHHHHHHT-H-HHHHHHST-TEEEEEEEC-T-EEEEE---EEEE-SC-CCEEEEEEEEEEEEEETTTEEEEE
T ss_pred cEEecCCHHHHHHHhcCH-HHHHhhCC-CcEEeeecC-c-EEEEE---EEEE-ec-cEEEEEEEEEEEEEcCCCcceEee
Confidence 678999999999999985 67889999 599999876 5 11111 1222 12 21 13555667777777763 3
Q ss_pred EEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCC
Q 030045 86 FKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNE 130 (183)
Q Consensus 86 y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~ 130 (183)
.+.-+.. .-.+..+.+++... + +++|.+.|+++++..+-
T Consensus 73 ~~g~g~~----~~~~~~~~~~~~~~-~-~~~T~v~~~~~~~~~G~ 111 (140)
T PF06240_consen 73 FEGRGRG----GGSSASANITLSLE-D-DGGTRVTWSADVEVGGP 111 (140)
T ss_dssp EEEEECT----CCEEEEEEEEEEEC-C-CTCEEEEEEEEEEEECH
T ss_pred eeccCCc----cceEEEEEEEEEcC-C-CCCcEEEEEEEEEEccC
Confidence 3333222 23345556666554 2 34499999999997664
No 31
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.19 E-value=4.3e-05 Score=59.44 Aligned_cols=135 Identities=13% Similarity=0.070 Sum_probs=87.2
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCc-c--eEEEEEEeecCCceE
Q 030045 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP-Q--IVKELIEVVDDENYI 83 (183)
Q Consensus 7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~-~--~~kErl~~iD~~~~~ 83 (183)
++.+..|++|+++||+++.|. ..+...+| -++|++. +|+ . ..-.+.+. .+ +. . .-|-++..+|+..++
T Consensus 3 ~~G~f~V~~p~e~Vw~~L~dp-e~~a~ciP-G~qs~e~-~g~-e---~~~~v~l~-ig-~l~~~~~g~~~~~~v~~~~~~ 73 (146)
T COG3427 3 YEGTFRVAAPPEAVWEFLNDP-EQVAACIP-GVQSVET-NGD-E---YTAKVKLK-IG-PLKGTFSGRVRFVNVDEPPRS 73 (146)
T ss_pred ccceEEecCCHHHHHHHhcCH-HHHHhhcC-Ccceeee-cCC-e---EEEEEEEe-ec-ceeEEEEEEEEEccccCCCcE
Confidence 566788999999999999975 67788999 5999995 566 1 12222333 22 21 2 245566667788888
Q ss_pred EEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCC-CCCchH-H--HHHHHHHHHHHHHHHHh
Q 030045 84 TIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNEN-VPDLES-K--VLEMMIDIVKNIDAYII 155 (183)
Q Consensus 84 ~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~-~~~p~~-~--~~~~~~~~~k~ie~yLl 155 (183)
++..--.|. .. .+-..++.+++.|. +++|++.|.+.-+-.+-. .-.+.. + ..+.+..+++.|.++|-
T Consensus 74 ~~i~g~G~~-~~-g~~~~~~~v~l~~~---g~gt~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~~l~ 144 (146)
T COG3427 74 ITINGSGGG-AA-GFADGTVDVQLEPS---GEGTRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSSELA 144 (146)
T ss_pred EEEEeeccc-cc-ceeeeeeEEEEEEc---CCCcEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 877766533 33 56688888999996 556999999986554321 011111 1 34445666666666653
No 32
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.19 E-value=4.4e-05 Score=57.76 Aligned_cols=133 Identities=11% Similarity=0.117 Sum_probs=75.1
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCCccccccC-CceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEE
Q 030045 7 LEAVIEVKASADKVHEVFSCRPHIVTSISP-QSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITI 85 (183)
Q Consensus 7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P-~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~ 85 (183)
++.+..+++|+++||+++-+- ..+.+|++ +.+.... .+.+ ..+|..-.+.+..++|..-...-++.++++.+ ++.
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~p-~~l~~W~~p~~~~~~~-~~~d-~~~GG~~~~~~~~~~g~~~~~~g~v~e~~p~~-~l~ 77 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTDP-EHLAQWWGPEGFTNTT-HEFD-LRPGGRWRFVMHGPDGTDYPNRIVFLEIEPPE-RIV 77 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCCH-HHHhhccCcCCCcceE-EEEE-ecCCCEEEEEEECCCCCEecceEEEEEEcCCC-EEE
Confidence 577889999999999999974 67888874 3332211 2233 23444434333312332222345777786554 566
Q ss_pred EEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCch-HH-HHHHHHHHHHHHHHHH
Q 030045 86 FKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLE-SK-VLEMMIDIVKNIDAYI 154 (183)
Q Consensus 86 y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~-~~-~~~~~~~~~k~ie~yL 154 (183)
|+.-.++. ....++++.|. ++||.++.+..|..... .... .. ..+....++..+++||
T Consensus 78 ~t~~~~~~------~~~v~~~~~~~---~~gT~ltl~~~~~~~~~--~~~~~~~~~~~Gw~~~l~~L~~~l 137 (139)
T cd08894 78 YDHGSGPP------RFRLTVTFEEQ---GGKTRLTWRQVFPTAAE--RCEKIKFGAVEGNEQTLDRLAAYL 137 (139)
T ss_pred EEeccCCC------cEEEEEEEEEC---CCCEEEEEEEEcCCHHH--HHHHHHhCHHHHHHHHHHHHHHHH
Confidence 66543321 24578888886 67898888765422110 0000 01 2334466777777776
No 33
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.03 E-value=0.00016 Score=55.18 Aligned_cols=139 Identities=11% Similarity=0.019 Sum_probs=76.0
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCCccccccCCc-eeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCce-EE
Q 030045 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQS-VQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENY-IT 84 (183)
Q Consensus 7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~-v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~-~~ 84 (183)
+..+..++||+++||+++-+- ..+.+|++.. . .+...+.|. .+|..-.+.+...+|..-.+.-++.++|+.++ .+
T Consensus 2 l~i~r~i~a~~e~Vw~a~t~p-e~~~~W~~p~~~-~~~~~~~d~-~~GG~~~~~~~~~~g~~~~~~g~v~~i~p~~~l~~ 78 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWTEP-ELLKQWFCPKPW-TTEVAELDL-RPGGAFRTVMRGPDGEEFPNPGCFLEVVPGERLVF 78 (146)
T ss_pred eEEEEEeCCCHHHHHHHcCCH-HHHhccCCCCCc-cceEEEEEe-ecCcEEEEEEECCCCCEecceEEEEEEeCCCEEEE
Confidence 567889999999999999974 6788998632 1 111122231 23333344443133432235667888876654 33
Q ss_pred EEEEEecc-ccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHH--HHHHHHHHHHHHHHHHh
Q 030045 85 IFKLIEGN-VLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESK--VLEMMIDIVKNIDAYII 155 (183)
Q Consensus 85 ~y~viEG~-~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~--~~~~~~~~~k~ie~yLl 155 (183)
++.+.++. .-..+ .-..++++.|. ++||.++.+..+... ........ ..+....++..+++||.
T Consensus 79 t~~~~~~~~~~~~~--~~~v~~~~~~~---~~gT~Ltl~~~~~~~--~~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 79 TDALTPGWRPAEKP--FMTAIITFEDE---GGGTRYTARARHWTE--ADRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred EEeecCCcCCCCCC--cEEEEEEEEec---CCcEEEEEEEEeCCH--HHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 43333321 11101 13567888886 678988876543211 00000010 13455778888888874
No 34
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.03 E-value=0.00045 Score=51.78 Aligned_cols=129 Identities=18% Similarity=0.244 Sum_probs=77.0
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceee--EEEEcCCCCCCccEEEEEEeecCCCc-ceEEEEEEeecCCce
Q 030045 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQS--CELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEVVDDENY 82 (183)
Q Consensus 6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s--~e~~eGd~g~~GsiR~~~~~~~gg~~-~~~kErl~~iD~~~~ 82 (183)
|++.++.++||+++||+++-|. ..+.+|++. ... +...+.| -.+|..-.+.+...++.. ..+.-++.++++ .+
T Consensus 1 ~~~~~~~~~ap~e~Vw~a~td~-e~~~~W~~~-~~~~~~~~~~~d-~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p-~~ 76 (133)
T cd08897 1 KITVETTVDAPIEKVWEAWTTP-EHITKWNFA-SDDWHCPSAEND-LRVGGKFSYRMEAKDGSMGFDFEGTYTEVEP-HK 76 (133)
T ss_pred CEEEEEEeCCCHHHHHHHhCCH-HHHhhCCCC-CCCcccceeeec-CCcCCEEEEEEEcCCCCcccccceEEEEECC-CC
Confidence 5788999999999999999974 678999652 111 1112234 245555455443123321 234556666654 45
Q ss_pred EEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHh
Q 030045 83 ITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMIDIVKNIDAYII 155 (183)
Q Consensus 83 ~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~~~~~~~~~k~ie~yLl 155 (183)
++.|+...+ ...++++.|. ++||.++.+ +...+.. ..+. .......++..|++||-
T Consensus 77 ~l~~~~~~~---------~~v~~~l~~~---~~gT~l~l~--~~~~~~~--~~~~-~~~GW~~~l~~L~~~le 132 (133)
T cd08897 77 LIEYTMEDG---------REVEVEFTEE---GDGTKVVET--FDAENEN--PVEM-QRQGWQAILDNFKKYVE 132 (133)
T ss_pred EEEEEcCCC---------CEEEEEEEEC---CCCEEEEEE--ECCCCCC--cHHH-HHHHHHHHHHHHHHHhh
Confidence 667775322 2468888886 677887765 3332211 1222 44555778888888873
No 35
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.02 E-value=0.00093 Score=53.15 Aligned_cols=142 Identities=13% Similarity=0.118 Sum_probs=82.9
Q ss_pred eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCC---cceEEEEEEeecCCc
Q 030045 5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGN---PQIVKELIEVVDDEN 81 (183)
Q Consensus 5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~---~~~~kErl~~iD~~~ 81 (183)
-.+..+..+++||+++|+++.|. ...|+|.| .+.++++++-. +.--.+-.+.+. ...+ ...+-.+-...+.++
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~d~-e~~~~w~~-~~~~~~vie~~-~~~~~i~~~~~~-~p~pvs~Rdfv~~~~~~~~~~~ 116 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLRDT-ESYPQWMP-NCKESRVLKRT-DDNERSVYTVID-LPWPVKDRDMVLRSTTEQDADD 116 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHhhh-HhHHHHHh-hcceEEEeecC-CCCcEEEEEEEe-cccccCCceEEEEEEEEEcCCC
Confidence 46778889999999999999976 67899999 79999998865 221223333333 2211 112211111222223
Q ss_pred eEEEEEEEeccc-cc-----cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHH
Q 030045 82 YITIFKLIEGNV-LE-----MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAY 153 (183)
Q Consensus 82 ~~~~y~viEG~~-l~-----~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~y 153 (183)
..+...+..++. .+ .....+.+.+.+.|. + +++|.+++...+++.+. .|.... . .......+++++.+.
T Consensus 117 ~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~-~-~~~t~vt~~~~~dp~g~-iP~~lv~~~~~~~~~~~l~~l~~~ 193 (195)
T cd08876 117 GSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPL-G-NGKTRVTYQAYADPGGS-IPGWLANAFAKDAPYNTLENLRKQ 193 (195)
T ss_pred CEEEEEeecCCccCCCCCCeEEceeceeeEEEEEC-C-CCeEEEEEEEEeCCCCC-CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444443321 01 014566778889997 4 66799999999888753 233322 2 333445666666554
No 36
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=97.99 E-value=4.6e-05 Score=61.19 Aligned_cols=114 Identities=13% Similarity=0.137 Sum_probs=82.9
Q ss_pred CCcceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCC
Q 030045 1 MSLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDE 80 (183)
Q Consensus 1 m~~~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~ 80 (183)
|+---.++.+++|+.|+++||...+|+ ..+|.||- .+.|+++.+-. + -.|+...+++-.-.++-+|+ -|..
T Consensus 66 ~~~~i~v~~~V~I~kPae~vy~~W~dL-e~lP~~Mk-hl~SVkVlddk---r---SrW~~~ap~g~~v~Wea~it-~d~~ 136 (217)
T COG5637 66 MAKPIEVEVQVTIDKPAEQVYAYWRDL-ENLPLWMK-HLDSVKVLDDK---R---SRWKANAPLGLEVEWEAEIT-KDIP 136 (217)
T ss_pred ccCceEEEEEEEeCChHHHHHHHHHhh-hhhhHHHH-hhceeeccCCC---c---cceeEcCCCCceEEEeehhh-ccCC
Confidence 444567899999999999999999998 56899999 69999988554 1 35555423443335666666 4899
Q ss_pred ceEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCC
Q 030045 81 NYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNE 130 (183)
Q Consensus 81 ~~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~ 130 (183)
+..|.+.-++|--++ -...++|.+. . +..|+|+.++.|-+.+.
T Consensus 137 ~e~I~W~Sl~Ga~v~-----NsG~VrF~~~-p-g~~t~V~v~lsY~~Pgg 179 (217)
T COG5637 137 GERIQWESLPGARVE-----NSGAVRFYDA-P-GDSTEVKVTLSYRPPGG 179 (217)
T ss_pred CcEEeeecCCCCcCC-----CCccEEeeeC-C-CCceEEEEEEEecCCcc
Confidence 999999999995442 1234566665 2 45689999999987554
No 37
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=97.89 E-value=0.00011 Score=57.06 Aligned_cols=113 Identities=15% Similarity=0.188 Sum_probs=83.5
Q ss_pred eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEE
Q 030045 5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYIT 84 (183)
Q Consensus 5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~ 84 (183)
.++++..-++-+|+++|+++.|. ...|+.+| .-.+.++.+.+ ...-+-.++.. -.+-..+..-|+. +++..+++
T Consensus 2 ~~~~~s~lv~y~a~~mF~LV~dV-~~YP~FlP-~C~~s~v~~~~--~~~l~A~l~V~-~k~i~e~F~Trv~-~~~~~~~I 75 (146)
T COG2867 2 PQIERTALVPYSASQMFDLVNDV-ESYPEFLP-WCSASRVLERN--ERELIAELDVG-FKGIRETFTTRVT-LKPTARSI 75 (146)
T ss_pred CeeEeeeeccCCHHHHHHHHHHH-HhCchhcc-ccccceEeccC--cceeEEEEEEE-hhheeeeeeeeee-ecCchhhh
Confidence 35778888999999999999986 67999999 78888888876 33345555544 2332234555544 55666677
Q ss_pred EEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCC
Q 030045 85 IFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNE 130 (183)
Q Consensus 85 ~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~ 130 (183)
.-++++|+ ++...+++++.|- + +++|.|+..++|+-.+-
T Consensus 76 ~~~l~~GP-----Fk~L~~~W~F~pl-~-~~~ckV~f~ldfeF~s~ 114 (146)
T COG2867 76 DMKLIDGP-----FKYLKGGWQFTPL-S-EDACKVEFFLDFEFKSR 114 (146)
T ss_pred hhhhhcCC-----hhhhcCceEEEEC-C-CCceEEEEEEEeeehhH
Confidence 77778776 5677889999996 3 77899999999998764
No 38
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=97.87 E-value=0.00072 Score=51.67 Aligned_cols=133 Identities=9% Similarity=-0.012 Sum_probs=72.8
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCCccccccCCce-------eeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecC
Q 030045 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSV-------QSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDD 79 (183)
Q Consensus 7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v-------~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~ 79 (183)
++.++.|+||+++||+++-+ .+.+|++..- ..|++. -.+|....+ .. .+|. ....=++.++++
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t~---~l~~W~~p~~~~~~~~~~~~~~d----~~~GG~~~~-~~-~~g~-~~~~g~v~~v~p 71 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFTE---GFGAWWPPEYHFVFSPGAEVVFE----PRAGGRWYE-IG-EDGT-ECEWGTVLAWEP 71 (149)
T ss_pred eEEEEEecCCHHHHHHHHHh---chhhccCCCcccccCCCccEEEc----ccCCcEEEE-ec-CCCc-EeceEEEEEEcC
Confidence 67899999999999999997 3678875321 334432 122222222 12 2332 223567777876
Q ss_pred CceEEEEEEE-ecccccc-ceEEEEEEEEEEeeeCCC-CCeEEEEEEEEEecCCC-CCCchH-H-HHHHHHHHHHHHHHH
Q 030045 80 ENYITIFKLI-EGNVLEM-LYKSFCSVAKVTQKDDHE-GGSLVRFTYKYEKQNEN-VPDLES-K-VLEMMIDIVKNIDAY 153 (183)
Q Consensus 80 ~~~~~~y~vi-EG~~l~~-~~~sy~~t~~v~p~~~~~-ggs~v~W~~~ye~~~~~-~~~p~~-~-~~~~~~~~~k~ie~y 153 (183)
.++ +.|+-. ..+..+. .. .-..++++.|. + +||.++.+..+...... ...... . .......++..|++|
T Consensus 72 ~~~-l~~tw~~~~~~~~~~~~-~t~vt~~l~~~---~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~ 146 (149)
T cd08891 72 PSR-LVFTWQINADWRPDPDK-ASEVEVRFEAV---GAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAA 146 (149)
T ss_pred CCE-EEEEeccCCCcCcCCCC-ceEEEEEEEEC---CCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHH
Confidence 654 445532 1111100 11 23578888886 5 78998887776443210 001111 1 233446777888877
Q ss_pred H
Q 030045 154 I 154 (183)
Q Consensus 154 L 154 (183)
|
T Consensus 147 l 147 (149)
T cd08891 147 A 147 (149)
T ss_pred h
Confidence 6
No 39
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.64 E-value=0.00086 Score=50.57 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=72.8
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEEE
Q 030045 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIF 86 (183)
Q Consensus 7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~y 86 (183)
++.++.++||+++||+++-+- ..+.+|.+. -.+.++. +|..-.+.|. ..++ .+.=++.++++ .+++.|
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p-~~l~~W~~~-~~~~~~~------~Gg~~~~~~~-~~~~--~~~g~~~~~~p-~~~l~~ 69 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDP-EITTKFWFT-GSSGRLE------EGKTVTWDWE-MYGA--SVPVNVLEIEP-NKRIVI 69 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCH-HHhcccccc-CCCcccc------CCCEEEEEEE-ccCC--ceEEEEEEEcC-CCEEEE
Confidence 468899999999999999974 678887553 2233433 3333345555 3332 23446677754 455667
Q ss_pred EEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H----HHHHHHHHHHHHHHHHhh
Q 030045 87 KLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K----VLEMMIDIVKNIDAYIIQ 156 (183)
Q Consensus 87 ~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~----~~~~~~~~~k~ie~yLl~ 156 (183)
+--.++ +. -..++++.+. + +|||.++.+...-+. ..++. . .......++..+++||..
T Consensus 70 ~w~~~~----~~--s~v~~~l~~~-~-~ggT~ltl~~~~~~~----~~~~~~~~~~~~~~GW~~~L~~L~~~le~ 132 (136)
T cd08901 70 EWGDPG----EP--TTVEWTFEEL-D-DGRTFVTITESGFPG----TDDEGLKQALGSTEGWTLVLAGLKAYLEH 132 (136)
T ss_pred EecCCC----CC--EEEEEEEEEC-C-CCcEEEEEEECCCCC----CcHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 654322 22 3368888886 2 378887766543221 11111 0 123345677778887754
No 40
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=97.55 E-value=0.0039 Score=46.44 Aligned_cols=121 Identities=10% Similarity=0.053 Sum_probs=68.8
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceE-EE
Q 030045 7 LEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYI-TI 85 (183)
Q Consensus 7 ~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~-~~ 85 (183)
++.+..++||+++||+++-+- ..+.+|+.. ..+.++..| |. +.+. .+ .+.-++.++++..+. ++
T Consensus 2 i~~~r~i~ap~e~Vw~A~T~~-e~l~~W~~~-~~~~d~~~G-----G~---~~~~-~g----~~~g~~~~i~p~~~l~~~ 66 (126)
T cd08892 2 ISLTETFQVPAEELYEALTDE-ERVQAFTRS-PAKVDAKVG-----GK---FSLF-GG----NITGEFVELVPGKKIVQK 66 (126)
T ss_pred eEEEEEECCCHHHHHHHHCCH-HHHHhhcCC-CceecCCCC-----CE---EEEe-CC----ceEEEEEEEcCCCEEEEE
Confidence 567899999999999999974 678899852 334444333 22 3334 33 244567777654332 34
Q ss_pred EEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHHHHHHHH-HHHHHHHHHH
Q 030045 86 FKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESKVLEMMI-DIVKNIDAYI 154 (183)
Q Consensus 86 y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~~~~~~~-~~~k~ie~yL 154 (183)
+...+.+. . ..-..++.+.+. ++||.++.+....+.. ..+. ..+... .++..|.++|
T Consensus 67 w~~~~~~~-~---~~s~v~~~l~~~---~~gT~ltl~~~g~~~~----~~~~-~~~GW~~~~~~~l~~~~ 124 (126)
T cd08892 67 WRFKSWPE-G---HYSTVTLTFTEK---DDETELKLTQTGVPAG----EEER-TREGWERYYFESIKQTF 124 (126)
T ss_pred EEcCCCCC-C---CcEEEEEEEEEC---CCCEEEEEEEECCCCc----hHHH-HHhhHHHHHHHHHHHHh
Confidence 44322111 1 123578888886 6678777666533211 1111 333333 3667777765
No 41
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=97.51 E-value=0.0043 Score=45.01 Aligned_cols=120 Identities=13% Similarity=0.161 Sum_probs=69.3
Q ss_pred cCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEEEEEEeccc
Q 030045 14 KASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFKLIEGNV 93 (183)
Q Consensus 14 ~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~y~viEG~~ 93 (183)
+||+++||+++.+. ..+.+|.+......++ .+|..-.+ .. .++......-++.++++.++ +.|+.--++.
T Consensus 1 ~ap~e~Vw~a~t~~-~~~~~W~~~~~~~~~~------~~Gg~~~~-~~-~~g~~~~~~~~v~~~~p~~~-i~~~~~~~~~ 70 (124)
T PF08327_consen 1 DAPPERVWEALTDP-EGLAQWFTTSEAEMDF------RPGGSFRF-MD-PDGGEFGFDGTVLEVEPPER-IVFTWRMPDD 70 (124)
T ss_dssp SSSHHHHHHHHHSH-HHHHHHSEEEEEEEEC------STTEEEEE-EE-TTSEEEEEEEEEEEEETTTE-EEEEEEEETS
T ss_pred CcCHHHHHHHHCCH-hHHhhccCCCcceeee------ecCCEEEE-Ee-cCCCCceeeEEEEEEeCCEE-EEEEEEccCC
Confidence 68999999999974 6788993312222222 33443333 23 34433345556888877665 6666432332
Q ss_pred cccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH--H-HHHHHHHHHHHHHHHH
Q 030045 94 LEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES--K-VLEMMIDIVKNIDAYI 154 (183)
Q Consensus 94 l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~--~-~~~~~~~~~k~ie~yL 154 (183)
. +-.....++++.+. +++|.++.+.. .. +.... . .......++..|.+||
T Consensus 71 ~--~~~~~~v~~~~~~~---~~~T~l~~~~~--~~----~~~~~~~~~~~~gw~~~l~~L~~~l 123 (124)
T PF08327_consen 71 P--DGPESRVTFEFEEE---GGGTRLTLTHS--GF----PDDDEEEEGMEQGWEQMLDRLKAYL 123 (124)
T ss_dssp S--SCEEEEEEEEEEEE---TTEEEEEEEEE--EE----HSHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred C--CCCceEEEEEEEEc---CCcEEEEEEEE--cC----CccHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 12355778888885 67887776662 21 11211 1 3344467777787776
No 42
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.0073 Score=46.71 Aligned_cols=138 Identities=15% Similarity=0.098 Sum_probs=71.8
Q ss_pred CcceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCc
Q 030045 2 SLAGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDEN 81 (183)
Q Consensus 2 ~~~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~ 81 (183)
.....++.+..|++|+++||+++.+. .++++|+...=...++.-|. +....+.. .+++...+.-++.++.+..
T Consensus 5 ~~~~~~~~er~i~aP~e~Vf~A~Tdp-e~l~~W~~~~~~~~d~r~gg----~~~~~~~~--~~g~~~~~~~~~~~v~p~~ 77 (149)
T COG3832 5 VEDRTLEIERLIDAPPEKVFEALTDP-ELLARWFMPGGAEFDARTGG----GERVRFRG--PDGPVHSFEGEYLEVVPPE 77 (149)
T ss_pred CCCceEEEEEeecCCHHHHHHHhcCH-HHHHhhcCCCCCccceecCC----ceEEeeec--CCCCeeecceEEEEEcCCc
Confidence 34568899999999999999999974 78999997111111111121 12222232 2343345566666675544
Q ss_pred eEEEEEE--EeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-H--HHHHHHHHHHHHHHHh
Q 030045 82 YITIFKL--IEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-V--LEMMIDIVKNIDAYII 155 (183)
Q Consensus 82 ~~~~y~v--iEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~--~~~~~~~~k~ie~yLl 155 (183)
++.|+- -+++. +...-..++++.|. . +|+ +++..........+.... + . .+....++..++++|.
T Consensus 78 -rIv~tw~~~~~~~---~~~~~~v~~~l~~~-~-~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 78 -RIVFTWDFDEDGE---PFLKSLVTITLTPE-D-DGG---TTTLVRTSGGGFLEDEDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred -EEEEEeccCCCCC---cccCceEEEEEEEe-c-CCC---cEEEEEEeeccccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence 444554 33332 22233456777775 1 332 222222232222222222 1 2 4445677777777663
No 43
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=96.64 E-value=0.22 Score=38.65 Aligned_cols=111 Identities=17% Similarity=0.287 Sum_probs=67.1
Q ss_pred CHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEEEEEEe-cccc
Q 030045 16 SADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFKLIE-GNVL 94 (183)
Q Consensus 16 pa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~y~viE-G~~l 94 (183)
..+++|.-+......--.+.| .+.+|++++.+ + .-..|.++|. .. .++|++.. ....++.|.+-. |+
T Consensus 18 Tr~QlW~GL~~kar~p~~Fvp-~i~~c~Vl~e~-~-~~l~Rel~f~-~~----~v~e~vt~--~~~~~v~f~~~~~g~-- 85 (141)
T cd08863 18 TRAQLWRGLVLRAREPQLFVP-GLDRCEVLSES-G-TVLERELTFG-PA----KIRETVTL--EPPSRVHFLQADAGG-- 85 (141)
T ss_pred CHHHHHhHHHhhhCCchhccc-ccceEEEEecC-C-CEEEEEEEEC-Cc----eEEEEEEe--cCCcEEEEEecCCCC--
Confidence 457999988854444445567 69999999776 2 2467999998 43 89999874 445567787766 43
Q ss_pred ccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-HHHHHHHHHHHH
Q 030045 95 EMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-KVLEMMIDIVKN 149 (183)
Q Consensus 95 ~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~~~~~~~~~~k~ 149 (183)
+. ++.+... ..|. .-.++.|+..-.+..+++. ++.+....+++.
T Consensus 86 -----~l--~~~iee~---~~g~-L~lrf~ye~~~p~~~~~e~~~~~~~~~~a~~~ 130 (141)
T cd08863 86 -----TL--TNTIEEP---EDGA-LYLRFVYETTLPEVAEEEAKAYQEIVKQAYKE 130 (141)
T ss_pred -----eE--EEEeccC---CCCc-EEEEEEEEecCCCcCchHHHHHHHHHHHHHHH
Confidence 22 2233221 3343 4567778775443333443 245554444443
No 44
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=96.48 E-value=0.046 Score=41.27 Aligned_cols=120 Identities=9% Similarity=0.086 Sum_probs=64.2
Q ss_pred EcCCHHHHHHHHhcCCCccccc-cCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceE-EEEEEEe
Q 030045 13 VKASADKVHEVFSCRPHIVTSI-SPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYI-TIFKLIE 90 (183)
Q Consensus 13 i~apa~~vw~~~~d~~~~lpk~-~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~-~~y~viE 90 (183)
++||+++||+++-+- ..+.+| .+ ....+++..| .. +.+. .+ .+.-++.++|+.+|. ++++.-+
T Consensus 1 f~ap~e~Vw~A~Tdp-~~l~~w~~~-~~~~~d~~~G------G~--f~~~-~~----~~~G~~~ev~pp~rlv~tw~~~~ 65 (132)
T PTZ00220 1 FYVPPEVLYNAFLDA-YTLTRLSLG-SPAEMDAKVG------GK--FSLF-NG----SVEGEFTELEKPKKIVQKWRFRD 65 (132)
T ss_pred CCCCHHHHHHHHcCH-HHHHHHhcC-CCccccCCcC------CE--EEEe-cC----ceEEEEEEEcCCCEEEEEEecCC
Confidence 479999999999964 677888 43 2222333223 22 2233 22 233466667666543 3454432
Q ss_pred ccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCC---CchHHHHHHHHH-HHHHHHHHH
Q 030045 91 GNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVP---DLESKVLEMMID-IVKNIDAYI 154 (183)
Q Consensus 91 G~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~---~p~~~~~~~~~~-~~k~ie~yL 154 (183)
.+. . .+ -..|+++.|. + +|+|.++.+..--+..+... ..+. ..+.... ++..|++||
T Consensus 66 ~~~-~-~~--s~vt~~~~~~-~-~g~T~lt~~~~g~~~~~~~~~~~~~~~-~~~GW~~~~ld~L~~~l 126 (132)
T PTZ00220 66 WEE-D-VY--SKVTIEFRAV-E-EDHTELKLTQTGIPSLDKFGNGGCLER-CRNGWTQNFLDRFEKIL 126 (132)
T ss_pred CCC-C-Cc--eEEEEEEEeC-C-CCcEEEEEEEecCccccccCCCchhhH-HHhChHHHHHHHHHHHh
Confidence 111 1 12 2478888885 2 56788887766222211100 1111 3344455 688888887
No 45
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=96.42 E-value=0.2 Score=39.13 Aligned_cols=90 Identities=17% Similarity=0.261 Sum_probs=53.0
Q ss_pred CHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEEEEEEeccccc
Q 030045 16 SADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFKLIEGNVLE 95 (183)
Q Consensus 16 pa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~y~viEG~~l~ 95 (183)
+.+++|+-+......--.++| .|.+|++++-. ...-.|.++|. + ..++|++...-+ .++.|....|
T Consensus 19 Tr~QlW~GL~~kar~p~~Fvp-~i~~c~Vl~e~--~~~~~R~v~fg--~---~~v~E~v~~~~~--~~V~f~~~~G---- 84 (149)
T PF08982_consen 19 TREQLWRGLVLKARNPQLFVP-GIDSCEVLSES--DTVLTREVTFG--G---ATVRERVTLYPP--ERVDFAQHDG---- 84 (149)
T ss_dssp -HHHHHHHHHHHHH-GGGT-T-T--EEEEEEE---SSEEEEEEEET--T---EEEEEEEEEETT--TEEEESSSBE----
T ss_pred CHHHHHHHHHHHHhChhhCcc-ccCeEEEEecC--CCeEEEEEEEC--C---cEEEEEEEEeCC--cEEEEEcCCC----
Confidence 345899988855444456778 79999999765 55779999996 3 289999875433 3666622222
Q ss_pred cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEec
Q 030045 96 MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQ 128 (183)
Q Consensus 96 ~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~ 128 (183)
++...+|+ .|. + | -.-.++.|+..
T Consensus 85 ---s~lt~~I~-e~~---~-g-~L~ltf~ye~~ 108 (149)
T PF08982_consen 85 ---SSLTNIIS-EPE---P-G-DLFLTFTYEWR 108 (149)
T ss_dssp ---EEEEEEEE-EEE---T-T-EEEEEEEEEEE
T ss_pred ---CEEEEEEe-cCC---C-C-cEEEEEEEEec
Confidence 23444444 342 3 3 45566777764
No 46
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=96.37 E-value=0.3 Score=39.81 Aligned_cols=147 Identities=5% Similarity=-0.004 Sum_probs=82.8
Q ss_pred eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCcc--EEEEEEeecCCC---cceEEEEEEeecC
Q 030045 5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGA--VICWTFTRYAGN---PQIVKELIEVVDD 79 (183)
Q Consensus 5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~Gs--iR~~~~~~~gg~---~~~~kErl~~iD~ 79 (183)
.-+..+..+++|++++|+.+.+.....++|.+ .+.++++++-- ...+ ++.+....+++. ...+-.|...-+.
T Consensus 49 k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~-~~~~~~vl~~i--d~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~ 125 (209)
T cd08905 49 KVFRLEVVVDQPLDNLYSELVDRMEQMGEWNP-NVKEVKILQRI--GKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRG 125 (209)
T ss_pred cEEEEEEEecCCHHHHHHHHHhchhhhceecc-cchHHHHHhhc--CCCceEEEEEeccCCCCccCccceEEEEEEEEcC
Confidence 34678899999999999666644467899999 68888887553 1122 222111101111 1223323333334
Q ss_pred CceEEEEEEEeccccc-----cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHH
Q 030045 80 ENYITIFKLIEGNVLE-----MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDA 152 (183)
Q Consensus 80 ~~~~~~y~viEG~~l~-----~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~ 152 (183)
.+..+.....+-+.++ .....+.+-+.+.|.+++.++|.++|.+..+++|.- |.... . ..+.....++.+.+
T Consensus 126 ~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~i-P~~lvN~~~~~~~~~~~~~Lr~ 204 (209)
T cd08905 126 STCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGWL-PKSIINQVLSQTQVDFANHLRQ 204 (209)
T ss_pred CcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCCC-CHHHHHHHhHHhHHHHHHHHHH
Confidence 4433222223333332 234455667888886111267999999999998863 44333 2 34555667777766
Q ss_pred HHh
Q 030045 153 YII 155 (183)
Q Consensus 153 yLl 155 (183)
+|.
T Consensus 205 ~~~ 207 (209)
T cd08905 205 RMA 207 (209)
T ss_pred HHh
Confidence 664
No 47
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=96.32 E-value=0.47 Score=38.86 Aligned_cols=146 Identities=6% Similarity=-0.032 Sum_probs=81.5
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeec--C--CCcceEEEEEEeecCCc
Q 030045 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRY--A--GNPQIVKELIEVVDDEN 81 (183)
Q Consensus 6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~--g--g~~~~~kErl~~iD~~~ 81 (183)
.+..+.++++|++++|+++.|. ...++|.+ .++++++++--.... .|-.+.+..+ . .+...+-.+....+...
T Consensus 46 ~~~ge~~v~as~~~v~~ll~D~-~~r~~Wd~-~~~~~~vl~~~~~d~-~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~ 122 (205)
T cd08874 46 GFLGAGVIKAPLATVWKAVKDP-RTRFLYDT-MIKTARIHKTFTEDI-CLVYLVHETPLCLLKQPRDFCCLQVEAKEGEL 122 (205)
T ss_pred eEEEEEEEcCCHHHHHHHHhCc-chhhhhHH-hhhheeeeeecCCCe-EEEEEEecCCCCCCCCCCeEEEEEEEEECCCc
Confidence 4556889999999999999986 56899999 899999987531222 2223222201 1 11123333322234444
Q ss_pred eEEEEEEEeccccc------cceEEEEEEEEEEeeeC-CCCCeEEEEEEEEEecCCCCCCchH-HHHHHHHHHHHHHHHH
Q 030045 82 YITIFKLIEGNVLE------MLYKSFCSVAKVTQKDD-HEGGSLVRFTYKYEKQNENVPDLES-KVLEMMIDIVKNIDAY 153 (183)
Q Consensus 82 ~~~~y~viEG~~l~------~~~~sy~~t~~v~p~~~-~~ggs~v~W~~~ye~~~~~~~~p~~-~~~~~~~~~~k~ie~y 153 (183)
..+.-+-++-+.++ .....+.+-+.+.|..+ |+|.|.++..+.-++.++..|.... .+......++..+-.|
T Consensus 123 ~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~~l~N~~~~~~p~~~~~~~~~ 202 (205)
T cd08874 123 SVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPAQLLSSLSKRQPLVIARLALF 202 (205)
T ss_pred EEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCHHHHhHHHHhccHHHHHHHHH
Confidence 44433333321221 13445677788888311 1356999999998888655554433 1333333334444444
Q ss_pred H
Q 030045 154 I 154 (183)
Q Consensus 154 L 154 (183)
|
T Consensus 203 ~ 203 (205)
T cd08874 203 L 203 (205)
T ss_pred h
Confidence 3
No 48
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=96.02 E-value=0.76 Score=38.53 Aligned_cols=146 Identities=11% Similarity=0.115 Sum_probs=84.6
Q ss_pred eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeec--CCCcceEEEEEEe--ecCC
Q 030045 5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRY--AGNPQIVKELIEV--VDDE 80 (183)
Q Consensus 5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~--gg~~~~~kErl~~--iD~~ 80 (183)
..+..+..+++|++++|+++.|. ...++|.+ ...++++++--....+ +-.+.+..+ -.+...+-.+-.. .+..
T Consensus 77 l~fk~e~~vd~s~~~v~dlL~D~-~~R~~WD~-~~~e~evI~~id~d~~-iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~ 153 (235)
T cd08873 77 LSFCVELKVQTCASDAFDLLSDP-FKRPEWDP-HGRSCEEVKRVGEDDG-IYHTTMPSLTSEKPNDFVLLVSRRKPATDG 153 (235)
T ss_pred eEEEEEEEecCCHHHHHHHHhCc-chhhhhhh-cccEEEEEEEeCCCcE-EEEEEcCCCCCCCCceEEEEEEEEeccCCC
Confidence 35678888999999999999986 56899999 6999999873211222 223333311 1111222222221 2232
Q ss_pred c-eEEEEEEEeccccc-----cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCC--chHH-HHHHHHHHHHHHH
Q 030045 81 N-YITIFKLIEGNVLE-----MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPD--LESK-VLEMMIDIVKNID 151 (183)
Q Consensus 81 ~-~~~~y~viEG~~l~-----~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~--p~~~-~~~~~~~~~k~ie 151 (183)
+ ..+...-+.=+.++ .....+.+-+.+.|. + +++|.|+.....+|.- .+- .+.. .-......|+.-+
T Consensus 154 ~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~-~-~~~t~VtY~~~~dPg~--~~~~~~~~~~~~~~~~~~~~~~~ 229 (235)
T cd08873 154 DPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQD-C-GTCTEVSYYNETNPKL--LSYVTCNLAGLSALYCRTFHCCE 229 (235)
T ss_pred CeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEEC-C-CCcEEEEEEEEcCCCc--cceeeecchhhhHHHHHHHHHHH
Confidence 2 33444434311111 245678889999997 3 6779888877766531 111 1111 3344466788888
Q ss_pred HHHhhC
Q 030045 152 AYIIQH 157 (183)
Q Consensus 152 ~yLl~~ 157 (183)
.||..|
T Consensus 230 ~~~~~~ 235 (235)
T cd08873 230 QFLVTN 235 (235)
T ss_pred HHhccC
Confidence 888754
No 49
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=95.75 E-value=0.83 Score=36.83 Aligned_cols=147 Identities=10% Similarity=0.063 Sum_probs=81.1
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecC-CC---cceEEEEEEeecCCc
Q 030045 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYA-GN---PQIVKELIEVVDDEN 81 (183)
Q Consensus 6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~g-g~---~~~~kErl~~iD~~~ 81 (183)
-+..+..+++||++++..+.+.....++|.+ .+..+++++.-.+.. .|-...+.... .+ ...+--|--..++..
T Consensus 49 ~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~-~~~~~~~i~~~d~~~-~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~ 126 (208)
T cd08868 49 VFRLTGVLDCPAEFLYNELVLNVESLPSWNP-TVLECKIIQVIDDNT-DISYQVAAEAGGGLVSPRDFVSLRHWGIRENC 126 (208)
T ss_pred EEEEEEEEcCCHHHHHHHHHcCccccceecC-cccceEEEEEecCCc-EEEEEEecCcCCCcccccceEEEEEEEecCCe
Confidence 3677889999999999766544467899999 677777775531111 12221221011 11 112222222233433
Q ss_pred eEEEEEEEeccccc-----cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHH
Q 030045 82 YITIFKLIEGNVLE-----MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYI 154 (183)
Q Consensus 82 ~~~~y~viEG~~l~-----~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yL 154 (183)
..+...-++=+-.+ .....+.+.+.+.|.+++.++|.++|.+..++.|.. |.--. . .......+++.+.+++
T Consensus 127 ~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~i-P~~lvN~~~~~~~~~~~~~Lr~~~ 205 (208)
T cd08868 127 YLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWL-PQYLVDQALASVLLDFMKHLRKRI 205 (208)
T ss_pred EEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCC-cceeeehhhHHHHHHHHHHHHHHH
Confidence 33333334322221 123345567788885221357999999998888643 43322 2 4555567788887776
Q ss_pred h
Q 030045 155 I 155 (183)
Q Consensus 155 l 155 (183)
.
T Consensus 206 ~ 206 (208)
T cd08868 206 A 206 (208)
T ss_pred h
Confidence 4
No 50
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=95.56 E-value=0.7 Score=35.95 Aligned_cols=112 Identities=18% Similarity=0.165 Sum_probs=63.6
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCCc--cccccCC---ceeeEEEEcCCCCCCccEEEE-EEeecCCC---------cceEE
Q 030045 7 LEAVIEVKASADKVHEVFSCRPHI--VTSISPQ---SVQSCELIEGEWGKPGAVICW-TFTRYAGN---------PQIVK 71 (183)
Q Consensus 7 ~~~ei~i~apa~~vw~~~~d~~~~--lpk~~P~---~v~s~e~~eGd~g~~GsiR~~-~~~~~gg~---------~~~~k 71 (183)
++.++++++|+++||++|.|.... .-+.+.. .+.+++. .|+ | -+|+.- .+..+.-| --.++
T Consensus 1 f~~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~-~~~-g--~~v~~~~~v~~~~lP~~~~k~v~~~l~v~ 76 (159)
T PF10698_consen 1 FEHSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEV-DGD-G--VRVTVRQTVPADKLPSAARKFVGGDLRVT 76 (159)
T ss_pred CeEEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEE-cCC-e--EEEEEEEecChhhCCHHHHHhcCCCeEEE
Confidence 467899999999999999964221 1222222 2444442 333 2 111111 12200111 01222
Q ss_pred --EEEEeecCCceEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecC
Q 030045 72 --ELIEVVDDENYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQN 129 (183)
Q Consensus 72 --Erl~~iD~~~~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~ 129 (183)
|+-...++..++.+|++--.+. --+..+++.+.|. ++||.+.+..+....-
T Consensus 77 ~~e~w~~~~~g~~~g~~~~~~~G~----P~~~~G~~~L~~~---~~gt~~~~~g~v~v~V 129 (159)
T PF10698_consen 77 RTETWTPLDDGRRTGTFTVSIPGA----PVSISGTMRLRPD---GGGTRLTVEGEVKVKV 129 (159)
T ss_pred EEEEEecCCCCeEEEEEEEEecCc----eEEEEEEEEEecC---CCCEEEEEEEEEEEEE
Confidence 2222336778888888543221 2278899999995 7789999999988754
No 51
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=95.19 E-value=1.4 Score=35.89 Aligned_cols=156 Identities=9% Similarity=0.055 Sum_probs=89.2
Q ss_pred EEEEEEEE-cCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecC-C-CcceEEEEEEeecCCce
Q 030045 6 ELEAVIEV-KASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYA-G-NPQIVKELIEVVDDENY 82 (183)
Q Consensus 6 ~~~~ei~i-~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~g-g-~~~~~kErl~~iD~~~~ 82 (183)
.+..+.++ ++|++.+++++.|. ...++|-| .+..+++++-- +.--.|..+.+..+- . +...+--|...-++...
T Consensus 48 ~~k~~~~~~~~s~e~~~~~l~D~-~~r~~Wd~-~~~e~~~ie~~-d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~ 124 (222)
T cd08871 48 MIKVSAIFPDVPAETLYDVLHDP-EYRKTWDS-NMIESFDICQL-NPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEY 124 (222)
T ss_pred EEEEEEEeCCCCHHHHHHHHHCh-hhhhhhhh-hhceeEEEEEc-CCCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEE
Confidence 35566666 69999999999875 67899999 57676766543 111234344443111 1 11222223222233222
Q ss_pred EEEEEEEeccccc-----cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHHh
Q 030045 83 ITIFKLIEGNVLE-----MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYII 155 (183)
Q Consensus 83 ~~~y~viEG~~l~-----~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yLl 155 (183)
.+...-++-+..+ .....+.+-+.+.|. + +++|.++|.+..++.+. .|.-.. . .......+++.+...+.
T Consensus 125 vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~-~-~~~t~vt~~~~~Dp~G~-IP~~lvN~~~~~~~~~~l~~l~k~~~ 201 (222)
T cd08871 125 IIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPT-G-PKGCTLTYVTQNDPKGS-LPKWVVNKATTKLAPKVMKKLHKAAL 201 (222)
T ss_pred EEEeccccCCCCCCCCCeEEeEEEccEEEEEEC-C-CCCEEEEEEEecCCCCC-cCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2222222222111 122345566778886 3 67899999988888774 243322 2 45556788899999988
Q ss_pred hChhhhhccccc
Q 030045 156 QHEEARVDDTDE 167 (183)
Q Consensus 156 ~~~~~~~~~~~~ 167 (183)
.-++.....-+|
T Consensus 202 ~y~~~~~~~~~~ 213 (222)
T cd08871 202 KYPEWKAKNNPE 213 (222)
T ss_pred HHHHHHHhcCCC
Confidence 888877555443
No 52
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=94.84 E-value=1.6 Score=35.38 Aligned_cols=145 Identities=11% Similarity=0.060 Sum_probs=81.2
Q ss_pred eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEee--cCCCcceE-E-EEEEeecCC
Q 030045 5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTR--YAGNPQIV-K-ELIEVVDDE 80 (183)
Q Consensus 5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~--~gg~~~~~-k-Erl~~iD~~ 80 (183)
..+..+..+++|++++..++.|. .+.|+|.|. ...++.++.. +.--.|-.+.+.. +-.....+ . -.++.+++.
T Consensus 46 ~~~k~e~~i~~~~~~~~~vl~d~-~~~~~W~p~-~~~~~~l~~~-~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~~~ 122 (215)
T cd08877 46 LSLRMEGEIDGPLFNLLALLNEV-ELYKTWVPF-CIRSKKVKQL-GRADKVCYLRVDLPWPLSNREAVFRGFGVDRLEEN 122 (215)
T ss_pred EEEEEEEEecCChhHeEEEEehh-hhHhhhccc-ceeeEEEeec-CCceEEEEEEEeCceEecceEEEEEEEEEeeeccC
Confidence 46778889999999999999976 789999995 5555555443 1112222222210 01111111 1 222333333
Q ss_pred ceE-EEEEEEeccc---------cc------cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHH
Q 030045 81 NYI-TIFKLIEGNV---------LE------MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEM 142 (183)
Q Consensus 81 ~~~-~~y~viEG~~---------l~------~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~ 142 (183)
+.. +.-.-+..+. ++ .....+.+-+.+.|. + +++|.+++.+..++.+...|.... . .+++
T Consensus 123 ~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~-~-~~~t~v~~~~~~DP~g~~IP~~liN~~~k~~ 200 (215)
T cd08877 123 GQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPI-S-PTKCYLRFVANVDPKMSLVPKSLLNFVARKF 200 (215)
T ss_pred CCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEc-C-CCCeEEEEEEEcCCCcccCCHHHHHHHHHHH
Confidence 321 1222222110 11 123567778888997 4 678999999988887763444333 2 5666
Q ss_pred HHHHHHHHHHHH
Q 030045 143 MIDIVKNIDAYI 154 (183)
Q Consensus 143 ~~~~~k~ie~yL 154 (183)
+..+++.|...+
T Consensus 201 ~~~~~~~l~k~~ 212 (215)
T cd08877 201 AGLLFEKIQKAA 212 (215)
T ss_pred HHHHHHHHHHHH
Confidence 667777776654
No 53
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=94.58 E-value=2.1 Score=34.82 Aligned_cols=143 Identities=9% Similarity=0.049 Sum_probs=77.8
Q ss_pred EEEEEEEcCCHHHHHHHHhcCCC-ccccccCCceeeEEEEcCCCCCCccEEEEEEeec-CC---CcceEEE-EEEeecCC
Q 030045 7 LEAVIEVKASADKVHEVFSCRPH-IVTSISPQSVQSCELIEGEWGKPGAVICWTFTRY-AG---NPQIVKE-LIEVVDDE 80 (183)
Q Consensus 7 ~~~ei~i~apa~~vw~~~~d~~~-~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~-gg---~~~~~kE-rl~~iD~~ 80 (183)
+..+..++++++++|+.+.|..+ .-++|-+ .+.++++++--.....-++. ..... .+ +...+-. .....++.
T Consensus 48 ~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~-~~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d~ 125 (208)
T cd08903 48 YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQ-NVKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYEDG 125 (208)
T ss_pred EEEEEEecCCHHHHHHHHHhccchhhhhhhh-ccccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCCc
Confidence 67889999999999999986533 3389999 78888888653122211222 21101 11 1112221 22223343
Q ss_pred ceEEEEEEEeccccc--cceE-E----EEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHH
Q 030045 81 NYITIFKLIEGNVLE--MLYK-S----FCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNID 151 (183)
Q Consensus 81 ~~~~~y~viEG~~l~--~~~~-s----y~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie 151 (183)
...+.+..++-+.++ -+|. - +..-++..|. + +++|.++|.+..++++.- |.... . ..+.....++.+.
T Consensus 126 ~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~-~-~~~t~v~~~~~~DpkG~i-P~~lvn~~~~~~~~~~~~~Lr 202 (208)
T cd08903 126 TISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPG-E-PDKTQLVSFFQTDLSGYL-PQTVVDSFFPASMAEFYNNLT 202 (208)
T ss_pred eEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCC-C-CCceEEEEEEEeccCCCc-CHHHHHHHhhHHHHHHHHHHH
Confidence 344455444443322 0111 1 2334444553 2 567999999999997653 44332 2 2344456666666
Q ss_pred HHH
Q 030045 152 AYI 154 (183)
Q Consensus 152 ~yL 154 (183)
.+|
T Consensus 203 ~~~ 205 (208)
T cd08903 203 KAV 205 (208)
T ss_pred HHH
Confidence 665
No 54
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=94.53 E-value=1.6 Score=33.49 Aligned_cols=141 Identities=14% Similarity=0.114 Sum_probs=79.0
Q ss_pred eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCc---ceEEEEEEeecCCc
Q 030045 5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP---QIVKELIEVVDDEN 81 (183)
Q Consensus 5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~---~~~kErl~~iD~~~ 81 (183)
..+..+.++++|++++|.++.+. ...++|-| .+.++++++-. +..-.+....+. ...+. ..+--+-...++++
T Consensus 39 ~~~k~~~~i~~~~~~v~~~l~d~-~~~~~w~~-~~~~~~vl~~~-~~~~~i~~~~~~-~p~p~~~Rdfv~~~~~~~~~~~ 114 (193)
T cd00177 39 KLLKAEGVIPASPEQVFELLMDI-DLRKKWDK-NFEEFEVIEEI-DEHTDIIYYKTK-PPWPVSPRDFVYLRRRRKLDDG 114 (193)
T ss_pred eeEEEEEEECCCHHHHHHHHhCC-chhhchhh-cceEEEEEEEe-CCCeEEEEEEee-CCCccCCccEEEEEEEEEcCCC
Confidence 34667889999999999999974 66799999 68998988764 222344444554 22211 12211212223322
Q ss_pred -eEEEEEEEeccccc---cce--EEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHH
Q 030045 82 -YITIFKLIEGNVLE---MLY--KSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDA 152 (183)
Q Consensus 82 -~~~~y~viEG~~l~---~~~--~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~ 152 (183)
..+...-++.+..+ ... ..+.+-+.+.|. + +++|.+++....++.+.. |.... . ..+....+.|.+..
T Consensus 115 ~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~-~-~~~~~vt~~~~~D~~g~i-P~~~~~~~~~~~~~~~~~~~~~ 190 (193)
T cd00177 115 TYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPL-D-PGKTKVTYVLQVDPKGSI-PKSLVNSAAKKQLASFLKDLRK 190 (193)
T ss_pred eEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEEC-C-CCCEEEEEEEeeCCCCCc-cHHHHHhhhhhccHHHHHHHHH
Confidence 22222223332111 011 222455677886 4 778999999999888743 43332 2 33444455554443
No 55
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=94.40 E-value=2.3 Score=34.65 Aligned_cols=144 Identities=10% Similarity=0.043 Sum_probs=77.1
Q ss_pred eEEEEEEEEcCCHHHHHH-HHhcCCCccccccCCceeeEEEEcCCCCCCcc-E-EEEEEeecCCCc---ceEEEEEEeec
Q 030045 5 GELEAVIEVKASADKVHE-VFSCRPHIVTSISPQSVQSCELIEGEWGKPGA-V-ICWTFTRYAGNP---QIVKELIEVVD 78 (183)
Q Consensus 5 ~~~~~ei~i~apa~~vw~-~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~Gs-i-R~~~~~~~gg~~---~~~kErl~~iD 78 (183)
..+..+..+++|++++|. ++.|. ...++|.+ .+.++++++-- + ..+ | +.++....+++. ..+-.|--.-+
T Consensus 49 ~~fk~~~~v~~~~~~l~~~ll~D~-~~~~~W~~-~~~~~~vi~~~-~-~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~ 124 (209)
T cd08906 49 KTFILKAFMQCPAELVYQEVILQP-EKMVLWNK-TVSACQVLQRV-D-DNTLVSYDVAAGAAGGVVSPRDFVNVRRIERR 124 (209)
T ss_pred cEEEEEEEEcCCHHHHHHHHHhCh-hhccccCc-cchhhhheeec-c-CCcEEEEEEccccccCCCCCCceEEEEEEEec
Confidence 457889999999999984 66665 67899999 68888888653 1 111 1 122221011221 23333333334
Q ss_pred CCceE-EEEEEEeccccc--cceE---EEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHH
Q 030045 79 DENYI-TIFKLIEGNVLE--MLYK---SFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNI 150 (183)
Q Consensus 79 ~~~~~-~~y~viEG~~l~--~~~~---sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~i 150 (183)
.++.. +..++ .-+.++ .+|. +..+-+-+.|.+.+.++|.++|.+..++.|.- |..-. . ..+.....++.+
T Consensus 125 ~~~~i~~~~sv-~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~l-P~~lvN~~~~~~~~~~~~~L 202 (209)
T cd08906 125 RDRYVSAGIST-THSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGRL-PRYLIHQSLAATMFEFASHL 202 (209)
T ss_pred CCcEEEEEEEE-ecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 44432 33333 233332 1121 12222334442112568999999999998843 44332 2 444445666666
Q ss_pred HHHH
Q 030045 151 DAYI 154 (183)
Q Consensus 151 e~yL 154 (183)
.++|
T Consensus 203 R~~~ 206 (209)
T cd08906 203 RQRI 206 (209)
T ss_pred HHHH
Confidence 6655
No 56
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=93.40 E-value=4.2 Score=34.15 Aligned_cols=144 Identities=13% Similarity=0.107 Sum_probs=77.2
Q ss_pred eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecC-CC--cc-eEEEEEEeecCC
Q 030045 5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYA-GN--PQ-IVKELIEVVDDE 80 (183)
Q Consensus 5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~g-g~--~~-~~kErl~~iD~~ 80 (183)
..+..+..+++|++++++++.|. ...++|.+ .+.++++++--...- .+..++-. +- ++ .+ .+-.+-..-+.+
T Consensus 81 ~~fK~e~~vd~s~e~v~~lL~D~-~~r~~Wd~-~~~e~~vIe~id~~~-~vY~v~~~-p~~~pvs~RDfV~~~s~~~~~~ 156 (240)
T cd08913 81 LSFKVEMVVHVDAAQAFLLLSDL-RRRPEWDK-HYRSCELVQQVDEDD-AIYHVTSP-SLSGHGKPQDFVILASRRKPCD 156 (240)
T ss_pred cEEEEEEEEcCCHHHHHHHHhCh-hhhhhhHh-hccEEEEEEecCCCc-EEEEEecC-CCCCCCCCCeEEEEEEEEeccC
Confidence 35677889999999999999876 67899999 699999886531222 24444422 21 12 11 222211112222
Q ss_pred ce---EEEEEEEeccccc-----cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHH--HHHHH-HHHHHH
Q 030045 81 NY---ITIFKLIEGNVLE-----MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESK--VLEMM-IDIVKN 149 (183)
Q Consensus 81 ~~---~~~y~viEG~~l~-----~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~--~~~~~-~~~~k~ 149 (183)
+. .+....+.=+-++ ....++.+-+.+.|. + +++|.+.+...-++ +..|..... ..+.. ...+..
T Consensus 157 ~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~-~-~~~t~vtY~~~~dP--G~LP~~~~N~~~~~~p~~~~~~~ 232 (240)
T cd08913 157 NGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEE-S-DQLTKVSYYNQATP--GVLPYISTDIAGLSSEFYSTFSA 232 (240)
T ss_pred CCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEEC-C-CCcEEEEEEEEeCC--ccccHHHhhhhhhccchhHHHHH
Confidence 22 2333333222122 234556778888886 3 67798887665444 343433221 22222 344555
Q ss_pred HHHHHhh
Q 030045 150 IDAYIIQ 156 (183)
Q Consensus 150 ie~yLl~ 156 (183)
-..+|++
T Consensus 233 ~~~~~~~ 239 (240)
T cd08913 233 CSQFLLD 239 (240)
T ss_pred HHHHhhc
Confidence 5555554
No 57
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=91.97 E-value=5.6 Score=32.11 Aligned_cols=146 Identities=14% Similarity=0.144 Sum_probs=81.6
Q ss_pred EEEEEEEE-cCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCcc-EEEEEEeec--CCCcceEEEEEEeec-CC
Q 030045 6 ELEAVIEV-KASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGA-VICWTFTRY--AGNPQIVKELIEVVD-DE 80 (183)
Q Consensus 6 ~~~~ei~i-~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~Gs-iR~~~~~~~--gg~~~~~kErl~~iD-~~ 80 (183)
.+..+.++ ++|++.+++++.|. ...++|.+ .+..+++++-+ ...|+ |-.+.+..+ =.+..++-.|-.-.| +.
T Consensus 51 ~~k~~~~~~~~s~~~~~~~l~D~-~~r~~Wd~-~~~~~~~le~~-~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~ 127 (209)
T cd08870 51 EYLVRGVFEDCTPELLRDFYWDD-EYRKKWDE-TVIEHETLEED-EKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDR 127 (209)
T ss_pred EEEEEEEEcCCCHHHHHHHHcCh-hhHhhhhh-heeeEEEEEec-CCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCC
Confidence 46677778 67999999999975 57899999 57777777655 22122 222222211 111124433333334 33
Q ss_pred ceEEEEEEEeccccc----cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchHH--HHHHHHHHHHHHHHHH
Q 030045 81 NYITIFKLIEGNVLE----MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLESK--VLEMMIDIVKNIDAYI 154 (183)
Q Consensus 81 ~~~~~y~viEG~~l~----~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~~--~~~~~~~~~k~ie~yL 154 (183)
...+....+.-+..+ .....|.+.+.+.|...++++|.+.++..-++.+. .|.--.. ....+..+++.|...+
T Consensus 128 ~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~-IP~wlvN~~~~~~~~~~l~~l~~a~ 206 (209)
T cd08870 128 SYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGG-IPRELAKLAVKRGMPGFLKKLENAL 206 (209)
T ss_pred EEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCC-CCHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333333333321111 24778888899988521156677777766665332 3332222 4555567788887766
Q ss_pred h
Q 030045 155 I 155 (183)
Q Consensus 155 l 155 (183)
.
T Consensus 207 ~ 207 (209)
T cd08870 207 R 207 (209)
T ss_pred h
Confidence 3
No 58
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=90.97 E-value=7.7 Score=32.56 Aligned_cols=117 Identities=16% Similarity=0.132 Sum_probs=66.2
Q ss_pred eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeec--CCCcc-eEEE--EEEeecC
Q 030045 5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRY--AGNPQ-IVKE--LIEVVDD 79 (183)
Q Consensus 5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~--gg~~~-~~kE--rl~~iD~ 79 (183)
..+..+..+++|+++++.++.|. ...++|.+ ...++++++--...- -|..+.-. + ..+.+ .+-. +....++
T Consensus 78 l~fk~e~~vdvs~~~l~~LL~D~-~~r~~Wd~-~~~e~~vI~qld~~~-~vY~~~~p-Pw~Pvk~RD~V~~~s~~~~~~d 153 (236)
T cd08914 78 LSVWVEKHVKRPAHLAYRLLSDF-TKRPLWDP-HFLSCEVIDWVSEDD-QIYHITCP-IVNNDKPKDLVVLVSRRKPLKD 153 (236)
T ss_pred EEEEEEEEEcCCHHHHHHHHhCh-hhhchhHH-hhceEEEEEEeCCCc-CEEEEecC-CCCCCCCceEEEEEEEEecCCC
Confidence 46778889999999999999987 67899999 688888876531111 26555422 2 11112 2221 1111212
Q ss_pred Cc-eEEEEEEEeccccc-----cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEe
Q 030045 80 EN-YITIFKLIEGNVLE-----MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEK 127 (183)
Q Consensus 80 ~~-~~~~y~viEG~~l~-----~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~ 127 (183)
.+ ..+.-.-+.-+.++ ....++..=+.+.|. + +++|.|+..+.-++
T Consensus 154 g~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~~I~pl-~-~~~~~VtY~~~~dP 205 (236)
T cd08914 154 GNTYVVAVKSVILPSVPPSPQYIRSEIICAGFLIHAI-D-SNSCTVSYFNQISA 205 (236)
T ss_pred CCEEEEEEeecccccCCCCCCcEEeEEEEEEEEEEEc-C-CCcEEEEEEEEcCC
Confidence 22 33333323221222 123342223377786 3 67899888888766
No 59
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=90.70 E-value=7 Score=30.84 Aligned_cols=146 Identities=13% Similarity=0.039 Sum_probs=82.6
Q ss_pred eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCc---ce--EEEEEEeecC
Q 030045 5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP---QI--VKELIEVVDD 79 (183)
Q Consensus 5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~---~~--~kErl~~iD~ 79 (183)
..+..+..+.+++++++..+-.+....++|.| .+..+++++--... ..|..+.+..+-++. .. .+.. ....+
T Consensus 45 ~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~-~~~~~~~ie~~~~~-~~i~~~~~~~~~~p~~~RDfv~~r~~-~~~~~ 121 (206)
T smart00234 45 EASRAVGVVPMVCADLVEELMDDLRYRPEWDK-NVAKAETLEVIDNG-TVIYHYVSKFVAGPVSPRDFVFVRYW-RELVD 121 (206)
T ss_pred EEEEEEEEEecChHHHHHHHHhcccchhhCch-hcccEEEEEEECCC-CeEEEEEEecccCcCCCCeEEEEEEE-EEcCC
Confidence 35677888999999866544433467899999 68888877643111 245554433111121 12 2222 22234
Q ss_pred CceEEEEEEEeccccc-----cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHH
Q 030045 80 ENYITIFKLIEGNVLE-----MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDA 152 (183)
Q Consensus 80 ~~~~~~y~viEG~~l~-----~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~ 152 (183)
....+...-++.+-.+ .....+.+-+.+.|. + ++.|.++|....++.+. .|..-. . .......+++.+-+
T Consensus 122 ~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~-~-~~~t~vt~~~~~D~~G~-iP~~lvn~~~~~~~~~~~~~~~~ 198 (206)
T smart00234 122 GSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPL-G-NGPSKVTWVSHADLKGW-LPHWLVRSLIKSGLAEFAKTWVA 198 (206)
T ss_pred CcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEEC-C-CCCeEEEEEEEEecCCC-ccceeehhhhhhhHHHHHHHHHH
Confidence 4444544444333221 123456778888896 3 56699999999888875 343332 2 44555666676666
Q ss_pred HHhh
Q 030045 153 YIIQ 156 (183)
Q Consensus 153 yLl~ 156 (183)
+|..
T Consensus 199 ~~~~ 202 (206)
T smart00234 199 TLQK 202 (206)
T ss_pred HHHH
Confidence 6643
No 60
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=90.48 E-value=8.2 Score=31.23 Aligned_cols=146 Identities=15% Similarity=0.195 Sum_probs=80.1
Q ss_pred EEEEEEEE-cCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCcc-EEEEEEeecC--CCcceEEEEEEeecCCc
Q 030045 6 ELEAVIEV-KASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGA-VICWTFTRYA--GNPQIVKELIEVVDDEN 81 (183)
Q Consensus 6 ~~~~ei~i-~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~Gs-iR~~~~~~~g--g~~~~~kErl~~iD~~~ 81 (183)
.+..+.++ ++|++.+++++.|. ...++|.+ .+.++++++-+ ...++ |-.+.+..+= .+..++-.|-...|+++
T Consensus 46 ~~k~~~~~~d~s~~~~~~~~~D~-~~r~~Wd~-~~~~~~~le~~-~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~ 122 (207)
T cd08911 46 EYKVYGSFDDVTARDFLNVQLDL-EYRKKWDA-TAVELEVVDED-PETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEEN 122 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHhCH-HHHHHHHh-hheeEEEEEcc-CCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCC
Confidence 45666666 99999999999976 67899999 67788888764 22232 2333322110 11134544544566555
Q ss_pred eE--EEEEEEeccccc-----cceEEEEEEEEEEeeeC-CCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHH
Q 030045 82 YI--TIFKLIEGNVLE-----MLYKSFCSVAKVTQKDD-HEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNID 151 (183)
Q Consensus 82 ~~--~~y~viEG~~l~-----~~~~sy~~t~~v~p~~~-~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie 151 (183)
.. +...-++-+..+ ....+|.+.+.+.|... +++||.+.++..-++.+ ..|.--. . +......+++.+.
T Consensus 123 ~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPgG-~IP~~lvN~~~~~~~~~~l~~l~ 201 (207)
T cd08911 123 KLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPGV-NIPSYITSWVAMSGMPDFLERLR 201 (207)
T ss_pred CEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCCC-ccCHHHHHHHHHhhccHHHHHHH
Confidence 43 222223211111 25678888999988520 14577776544433322 2232222 2 4445567777776
Q ss_pred HHHh
Q 030045 152 AYII 155 (183)
Q Consensus 152 ~yLl 155 (183)
..++
T Consensus 202 ~a~~ 205 (207)
T cd08911 202 NAAL 205 (207)
T ss_pred HHHh
Confidence 6654
No 61
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=88.88 E-value=9.4 Score=29.64 Aligned_cols=141 Identities=12% Similarity=0.090 Sum_probs=84.5
Q ss_pred ceEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCc-ceEEEEEEe--ecCC
Q 030045 4 AGELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNP-QIVKELIEV--VDDE 80 (183)
Q Consensus 4 ~~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~-~~~kErl~~--iD~~ 80 (183)
.|++.....|++|.+-||+....- ..+..+-|..+ +-+-+|+.-+.|+-....+..-+.+. -.++-|+++ .|+-
T Consensus 1 m~tF~~~~~i~aP~E~VWafhsrp-d~lq~LTppw~--VV~p~g~eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~~ 77 (153)
T COG4276 1 MGTFVYRTTITAPHEMVWAFHSRP-DALQRLTPPWI--VVLPLGSEITQGTRIAMGLTPFGLPAGLTWVARHTESGFDNG 77 (153)
T ss_pred CcceEEeeEecCCHHHHhhhhcCc-cHHHhcCCCcE--EeccCCCcccceeeeeecceeecCCCCceEEEEeeecccCCc
Confidence 367888999999999999998854 45666667433 33334542344443333322012222 467888777 4433
Q ss_pred ceEEEEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHHHH
Q 030045 81 NYITIFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDAYI 154 (183)
Q Consensus 81 ~~~~~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~yL 154 (183)
.+++=..|.|++ +.-+..-+-++.+. +|+++..=.+.|+...+....-.. . ..-....||+.-+.-|
T Consensus 78 -~~FtDv~i~gPf---p~~~WrHtH~F~~e---gg~TvliD~Vsye~p~g~~~~~~g~~l~q~~l~~mFr~Rhs~l 146 (153)
T COG4276 78 -SRFTDVCITGPF---PALNWRHTHNFVDE---GGGTVLIDSVSYELPAGTLTGMFGYRLTQLILDLMFRSRHSTL 146 (153)
T ss_pred -ceeeeeeecCCc---cceeeEEEeeeecC---CCcEEEEeeEEeeccCcceechhhhhhHHHHHHHHHHHHHHHH
Confidence 344555676775 33367788999995 778999999999986553222112 1 2333356666544433
No 62
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=88.87 E-value=11 Score=30.27 Aligned_cols=146 Identities=12% Similarity=0.003 Sum_probs=76.1
Q ss_pred EEEEEEEEcCCHHHHHHHHhcC-CCccccccCCceeeEEEEcCCCCCCccEEEEEEeec-CC--Ccc-eE-EEEEEeecC
Q 030045 6 ELEAVIEVKASADKVHEVFSCR-PHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRY-AG--NPQ-IV-KELIEVVDD 79 (183)
Q Consensus 6 ~~~~ei~i~apa~~vw~~~~d~-~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~-gg--~~~-~~-kErl~~iD~ 79 (183)
-+..+..++++++++++.+.+. ....++|-+ .+..+++++.- +..=.|....+... .+ ..+ .+ ......+++
T Consensus 47 ~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~-~~~~~~~le~i-d~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~ 124 (206)
T cd08867 47 LYRAEGIVDALPEKVIDVIIPPCGGLRLKWDK-SLKHYEVLEKI-SEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYED 124 (206)
T ss_pred EEEEEEEEcCCHHHHHHHHHhcCccccccccc-cccceEEEEEe-CCCeEEEEEEccccccCccCCcceEEEEEEEEeCC
Confidence 3778899999999999999872 345789998 68888888764 21111222222100 11 111 11 111122333
Q ss_pred CceEEEEEEEeccccc--cc---eEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHHHH
Q 030045 80 ENYITIFKLIEGNVLE--ML---YKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNIDA 152 (183)
Q Consensus 80 ~~~~~~y~viEG~~l~--~~---~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~ie~ 152 (183)
....+...-++=+..+ .+ -..+.+-+-+.|.+++.++|.++|.+..++.|.. |.--. . ..+....+++.+..
T Consensus 125 ~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~i-P~~lvn~~~~~~~~~~~~~lr~ 203 (206)
T cd08867 125 NQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMI-PQSLVESAMPSNLVNFYTDLVK 203 (206)
T ss_pred CeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCCC-cHHHHHhhhhhhHHHHHHHHHH
Confidence 3333333334322221 01 1223334445553121457999999999998753 43222 1 33444566666665
Q ss_pred HH
Q 030045 153 YI 154 (183)
Q Consensus 153 yL 154 (183)
+|
T Consensus 204 ~~ 205 (206)
T cd08867 204 GV 205 (206)
T ss_pred hc
Confidence 54
No 63
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=88.81 E-value=11 Score=30.26 Aligned_cols=119 Identities=12% Similarity=0.032 Sum_probs=69.2
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeec-CCC-cceEEEEEEeecCCc--
Q 030045 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRY-AGN-PQIVKELIEVVDDEN-- 81 (183)
Q Consensus 6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~-gg~-~~~~kErl~~iD~~~-- 81 (183)
-+..+.++++++++++..+.+. -++|.+ .+.++++++-- +.-=.|-...+..+ ..+ ...+-.|.-..+.++
T Consensus 45 ~~K~~~~v~a~~~~v~~~l~d~---r~~Wd~-~~~~~~vie~i-d~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~ 119 (197)
T cd08869 45 LWRASTEVEAPPEEVLQRILRE---RHLWDD-DLLQWKVVETL-DEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGA 119 (197)
T ss_pred EEEEEEEeCCCHHHHHHHHHHH---Hhccch-hhheEEEEEEe-cCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCc
Confidence 3578999999999999988764 389999 67777777543 11111222222211 111 123333333333333
Q ss_pred eEEEEEEEec-ccc--c-cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCC
Q 030045 82 YITIFKLIEG-NVL--E-MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNEN 131 (183)
Q Consensus 82 ~~~~y~viEG-~~l--~-~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~ 131 (183)
..+.+.-++- +.. + .....+.+-+.++|. + +++|.+++.+..++.|..
T Consensus 120 ~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~-~-~~~t~vty~~~~Dp~G~i 171 (197)
T cd08869 120 CVLVETSVEHTEPVPLGGVRAVVLASRYLIEPC-G-SGKSRVTHICRVDLRGRS 171 (197)
T ss_pred EEEEEECCcCCCCCCCCCEEEEEEeeeEEEEEC-C-CCCeEEEEEEEECCCCCC
Confidence 3333333321 111 1 123456678888996 3 678999999999998753
No 64
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=86.04 E-value=19 Score=29.99 Aligned_cols=143 Identities=11% Similarity=0.094 Sum_probs=79.2
Q ss_pred EEEEEEEEc-CCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCcc-EEEEEEeec--CCCcce-EEEEEEeecCC
Q 030045 6 ELEAVIEVK-ASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGA-VICWTFTRY--AGNPQI-VKELIEVVDDE 80 (183)
Q Consensus 6 ~~~~ei~i~-apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~Gs-iR~~~~~~~--gg~~~~-~kErl~~iD~~ 80 (183)
.+..+.+++ +++..+.+.+.|- ...++|.. .+.+.++++-. ..++ |-...+..+ -.+... +.-++...++.
T Consensus 53 ~~Ka~~~v~~vt~~~~~~~l~D~-~~r~~Wd~-~~~~~~vie~l--~~~~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~ 128 (235)
T cd08872 53 PLKATHAVKGVTGHEVCHYFFDP-DVRMDWET-TLENFHVVETL--SQDTLIFHQTHKRVWPAAQRDALFVSHIRKIPAL 128 (235)
T ss_pred eEEEEEEECCCCHHHHHHHHhCh-hhHHHHHh-hhheeEEEEec--CCCCEEEEEEccCCCCCCCcEEEEEEEEEecCcc
Confidence 467778888 9999999999875 67899999 68888877553 1122 222222200 001112 12222223332
Q ss_pred c--------eEEEEEEEeccccc--cceEEEE-------EE--------EEEEeeeCCCCCeEEEEEEEEEecCCCCCCc
Q 030045 81 N--------YITIFKLIEGNVLE--MLYKSFC-------SV--------AKVTQKDDHEGGSLVRFTYKYEKQNENVPDL 135 (183)
Q Consensus 81 ~--------~~~~y~viEG~~l~--~~~~sy~-------~t--------~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p 135 (183)
. -.+..++. -+..+ .+|-.-. .+ +.++|. +++|.+++.+.-++.|.. |..
T Consensus 129 ~~~~~~~~~vii~~Sv~-h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~---~~~~~ity~~~~dPgG~i-P~w 203 (235)
T cd08872 129 EEPNAHDTWIVCNFSVD-HDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITRD---NILCKITYVANVNPGGWA-PAS 203 (235)
T ss_pred ccccCCCeEEEEEeccc-CccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccCC---CCeEEEEEEEEeCCCCCc-cHH
Confidence 1 22333332 22222 0111111 11 223342 567999888887777653 444
Q ss_pred hH-H-HHHHHHHHHHHHHHHHhhC
Q 030045 136 ES-K-VLEMMIDIVKNIDAYIIQH 157 (183)
Q Consensus 136 ~~-~-~~~~~~~~~k~ie~yLl~~ 157 (183)
-. . ++..+..++|++.+|++.+
T Consensus 204 vvn~~~k~~~P~~l~~~~~~~~~~ 227 (235)
T cd08872 204 VLRAVYKREYPKFLKRFTSYVQEK 227 (235)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHh
Confidence 33 3 6777799999999999864
No 65
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=85.93 E-value=0.31 Score=32.11 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=25.5
Q ss_pred HHHHHHHHhhChhhh-hccccceeeeeccccccc
Q 030045 147 VKNIDAYIIQHEEAR-VDDTDEVLLVNVNSQEIE 179 (183)
Q Consensus 147 ~k~ie~yLl~~~~~~-~~~~~~~~~~~~~~~~~~ 179 (183)
.+.|=.||+.||++- .=-.-+|-|++|+.+|..
T Consensus 2 ~Q~iV~YLv~nPevl~kl~~g~asLIGv~~~e~~ 35 (57)
T PF05952_consen 2 KQEIVNYLVQNPEVLEKLKEGEASLIGVDKDEQK 35 (57)
T ss_pred hHHHHHHHHHChHHHHHHHcCCeeEecCCHHHHH
Confidence 467889999999984 223348999999988754
No 66
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=79.44 E-value=26 Score=26.98 Aligned_cols=100 Identities=20% Similarity=0.351 Sum_probs=52.7
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCC-CCCCccEEEEEEeecCCCcceEEEEEEeecCCceEE
Q 030045 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGE-WGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYIT 84 (183)
Q Consensus 6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd-~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~ 84 (183)
+++.++..+-+.+.+-.++.|-...+|+++| .++++. ++|+ ..+-|. |. +-.-.++=|+- +...+=+|
T Consensus 2 ~~~~~i~t~H~~e~v~~ILSDP~F~lp~l~p-~ik~v~-~~~~sF~~~g~-----~~---~~~~~~~G~vy-~s~~~ItY 70 (136)
T PF11485_consen 2 EIEIEIKTSHDIEVVLTILSDPEFVLPRLFP-PIKSVK-VEENSFRAEGK-----FG---GFPFEMKGNVY-VSSNEITY 70 (136)
T ss_dssp -EEEEEE-SS-HHHHHHHHT-HHHHHHHHST-TEEEEE--STTEEEEEEE-----ET---TEEEEEEEEEE-EETTEEEE
T ss_pred eEEEEeccCCChHheEEEecCCccEecccCC-ceEEEE-ecCCEEEEEEE-----Ee---eEEEEEEEEEE-EccceEEE
Confidence 3567888888999999999986558999999 799999 4554 111111 11 10012343432 33445566
Q ss_pred EEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEe
Q 030045 85 IFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEK 127 (183)
Q Consensus 85 ~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~ 127 (183)
.|.+..|...+ +=+.+++..+ + .++..++|+-
T Consensus 71 vf~~~~g~~~g----~GkL~i~~~~------~-~i~l~~eyeg 102 (136)
T PF11485_consen 71 VFNLAGGGPNG----NGKLTIQLEN------G-KIKLIFEYEG 102 (136)
T ss_dssp EEE----ETTE----EEEEEEEEET------T-EEEEEEEES-
T ss_pred EEEeeccCCCC----cEEEEEEecC------C-EEEEEEEccc
Confidence 77777765332 4444555522 2 4666777653
No 67
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=78.15 E-value=35 Score=27.60 Aligned_cols=140 Identities=14% Similarity=0.097 Sum_probs=75.3
Q ss_pred EEEEEEEEc-CCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeec----CCCcceEEEEEEeecCC
Q 030045 6 ELEAVIEVK-ASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRY----AGNPQIVKELIEVVDDE 80 (183)
Q Consensus 6 ~~~~ei~i~-apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~----gg~~~~~kErl~~iD~~ 80 (183)
.+..+.+++ ++++.+++++.|. ...++|.+. +.++.-.+.+ + --|-.+.+..+ +...-..+.+ ..+|.+
T Consensus 50 ~~k~~~~~~~~s~~~~~~~l~D~-~~r~~Wd~~-~~~~~~~~~~-~--~~i~y~~~k~PwPvs~RD~V~~r~~-~~~~~~ 123 (207)
T cd08910 50 EYKVFGVLEDCSPSLLADVYMDL-EYRKQWDQY-VKELYEKECD-G--ETVIYWEVKYPFPLSNRDYVYIRQR-RDLDVE 123 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHhCH-HHHHHHHHH-HHhheeecCC-C--CEEEEEEEEcCCCCCCceEEEEEEe-ccccCC
Confidence 466778887 7999999999975 678999995 4443211222 1 12333333210 1111122333 334544
Q ss_pred ceEEE---EEEEeccccc-----cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHH
Q 030045 81 NYITI---FKLIEGNVLE-----MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNI 150 (183)
Q Consensus 81 ~~~~~---y~viEG~~l~-----~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~i 150 (183)
+..+. ...++=+-.+ .....|.+.+.+.|. + +++|.+.+...-++.+. .|.-.. . .......+++.|
T Consensus 124 ~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~-~-~~~t~i~~~~~~DPgG~-IP~wlvN~~~~~~~~~~l~~l 200 (207)
T cd08910 124 GRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESD-G-KKGSKVFMYYFDNPGGM-IPSWLINWAAKNGVPNFLKDM 200 (207)
T ss_pred CCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeC-C-CCceEEEEEEEeCCCCc-chHHHHHHHHHHhhHHHHHHH
Confidence 43211 1222211111 246788999999986 3 66788877777666443 233222 2 455556777777
Q ss_pred HHHH
Q 030045 151 DAYI 154 (183)
Q Consensus 151 e~yL 154 (183)
...+
T Consensus 201 ~ka~ 204 (207)
T cd08910 201 QKAC 204 (207)
T ss_pred HHHH
Confidence 6654
No 68
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=74.20 E-value=40 Score=26.34 Aligned_cols=145 Identities=13% Similarity=0.081 Sum_probs=87.0
Q ss_pred eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCC--Cc---ceEEEEEEe-ec
Q 030045 5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAG--NP---QIVKELIEV-VD 78 (183)
Q Consensus 5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg--~~---~~~kErl~~-iD 78 (183)
-.+..+..+++++++++..+.+... +|-+ .+..+++++-- ..-..|..+.+. .-. +. ..+--|... ..
T Consensus 46 ~~~k~~~~v~~~~~~~~~~~~~~~~---~Wd~-~~~~~~~le~~-~~~~~i~~~~~~-~~~~~p~~~RDfv~~~~~~~~~ 119 (206)
T PF01852_consen 46 KMFKAEGVVPASPEQVVEDLLDDRE---QWDK-MCVEAEVLEQI-DEDTDIVYFVMK-SPWPGPVSPRDFVFLRSWRKDE 119 (206)
T ss_dssp EEEEEEEEESSCHHHHHHHHHCGGG---HHST-TEEEEEEEEEE-ETTEEEEEEEEE--CTTTTSSEEEEEEEEEEEECT
T ss_pred eEEEEEEEEcCChHHHHHHHHhhHh---hccc-chhhheeeeec-CCCCeEEEEEec-ccCCCCCCCcEEEEEEEEEEec
Confidence 4567888999999999988886532 9999 68888888752 122456665544 222 32 122122222 34
Q ss_pred CCceEEEEEEEeccccc------cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCCCCchH-H-HHHHHHHHHHHH
Q 030045 79 DENYITIFKLIEGNVLE------MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENVPDLES-K-VLEMMIDIVKNI 150 (183)
Q Consensus 79 ~~~~~~~y~viEG~~l~------~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~~~p~~-~-~~~~~~~~~k~i 150 (183)
+....+..+=++.+-.+ ..-..+.+-+.+.|. + ++.|.|++...-++.+.. |.-.. . .......+++.+
T Consensus 120 ~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~-~-~~~~~vt~~~~~D~~G~i-P~~~~n~~~~~~~~~~~~~~ 196 (206)
T PF01852_consen 120 DGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPL-G-DGRTRVTYVSQVDPKGWI-PSWLVNMVVKSQPPNFLKNL 196 (206)
T ss_dssp TSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEE-T-TCEEEEEEEEEEESSSSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEeeeccccccccccCcceeeeeeEeEEEEEc-c-CCCceEEEEEEECCCCCC-hHHHHHHHHHHhHHHHHHHH
Confidence 44455555544433221 233466788889997 3 555999999888887743 32222 2 444456777777
Q ss_pred HHHHhhCh
Q 030045 151 DAYIIQHE 158 (183)
Q Consensus 151 e~yLl~~~ 158 (183)
-++|..+.
T Consensus 197 ~~~~~~~~ 204 (206)
T PF01852_consen 197 RKALKKQK 204 (206)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHhc
Confidence 77776554
No 69
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=55.87 E-value=1.1e+02 Score=24.91 Aligned_cols=120 Identities=8% Similarity=0.001 Sum_probs=68.3
Q ss_pred eEEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeec-CCCc-ceEEEEEEeecCCce
Q 030045 5 GELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRY-AGNP-QIVKELIEVVDDENY 82 (183)
Q Consensus 5 ~~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~-gg~~-~~~kErl~~iD~~~~ 82 (183)
..+..+++++++++++...+-|. .++|.+ .+...++++--.... -|-...+..+ -.+. ..+-.|.-..|..+.
T Consensus 52 ~~~r~~~~i~a~~~~vl~~lld~---~~~Wd~-~~~e~~vIe~ld~~~-~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g 126 (204)
T cd08908 52 RLWRTTIEVPAAPEEILKRLLKE---QHLWDV-DLLDSKVIEILDSQT-EIYQYVQNSMAPHPARDYVVLRTWRTNLPKG 126 (204)
T ss_pred EEEEEEEEeCCCHHHHHHHHHhh---HHHHHH-HhhheEeeEecCCCc-eEEEEEccCCCCCCCcEEEEEEEEEEeCCCC
Confidence 45788999999999999999865 689999 456556654421111 1212111101 1122 234444433333333
Q ss_pred EEEEEE--Eeccccc---cceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCC
Q 030045 83 ITIFKL--IEGNVLE---MLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNEN 131 (183)
Q Consensus 83 ~~~y~v--iEG~~l~---~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~ 131 (183)
.+.-.. ++-+.++ .....+.+-+-+.|. + .|+|.++..+..++.|..
T Consensus 127 ~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~-g-~g~t~vtyi~~~DPgG~i 178 (204)
T cd08908 127 ACALLATSVDHDRAPVAGVRVNVLLSRYLIEPC-G-SGKSKLTYMCRIDLRGHM 178 (204)
T ss_pred eEEEEEeecCcccCCcCceEEEEEeeEEEEEEC-C-CCcEEEEEEEEeCCCCCC
Confidence 332221 2222222 234456778888996 3 678999999998887753
No 70
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=43.16 E-value=1.3e+02 Score=22.10 Aligned_cols=101 Identities=14% Similarity=0.113 Sum_probs=52.9
Q ss_pred EEEEEEcCCHHHHHHHHhcCCC-ccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEEE
Q 030045 8 EAVIEVKASADKVHEVFSCRPH-IVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIF 86 (183)
Q Consensus 8 ~~ei~i~apa~~vw~~~~d~~~-~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~y 86 (183)
..+.++++||+.+|..+.+..- -+.+.-...+..-++ +|- -=.=++. .+ ..++=+|+.+ ..++.|.+
T Consensus 2 kI~~~l~v~a~~ff~~l~~s~~~DI~~~tgk~~~~~~L-~G~------~Y~K~~~-~~---~~~~v~It~~-~~~~~Y~~ 69 (120)
T PF11687_consen 2 KISKTLNVSAEEFFDYLIDSLLYDIKQATGKKLPVKQL-KGF------SYQKKFK-NK---REAKVKITEY-EPNKRYAA 69 (120)
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHHHHHcCCCCChhhc-CCc------EEEEEcC-CC---CEEEEEEEEE-cCCCEEEE
Confidence 3566799999999999885311 111111111111122 331 1111122 12 2555567766 45566666
Q ss_pred EEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEec
Q 030045 87 KLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQ 128 (183)
Q Consensus 87 ~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~ 128 (183)
+..- ....+..+.++.|. + +|.|.|..+=+++..
T Consensus 70 ~~~s------~~~~~~i~Y~i~~~-~-~~~~~v~y~E~~~~~ 103 (120)
T PF11687_consen 70 TFSS------SRGTFTISYEIEPL-D-DGSIEVTYEEEYESK 103 (120)
T ss_pred EEEe------cCCCEEEEEEEEEC-C-CCcEEEEEEEEEccC
Confidence 6654 22357777788887 3 555777766555543
No 71
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=42.42 E-value=1.6e+02 Score=24.60 Aligned_cols=109 Identities=6% Similarity=0.024 Sum_probs=67.1
Q ss_pred EEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCceEEEEEEEe
Q 030045 11 IEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDENYITIFKLIE 90 (183)
Q Consensus 11 i~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~~~~~y~viE 90 (183)
-.+..+++.+|+++.+- +...+..| ..++.+++.-+ -.-+.+-.+...+..-. ....-+++ .++..++++ ..-+
T Consensus 74 rligysp~~my~vVS~V-~~Y~~FVP-wC~kS~V~~~~-P~~~~kA~LeVGFk~l~-E~y~S~Vt-~~~p~l~kt-~~~d 147 (227)
T KOG3177|consen 74 RLIGYSPSEMYSVVSNV-SEYHEFVP-WCKKSDVTSRR-PSGPLKADLEVGFKPLD-ERYTSNVT-CVKPHLTKT-VCAD 147 (227)
T ss_pred hhhCCCHHHHHHHHHhH-HHhhcccc-ceeccceeecC-CCCCceeeEEecCcccc-hhheeeeE-EecccceEE-eecc
Confidence 34789999999999975 56778899 88888877654 12234444443211110 12222332 334443322 3345
Q ss_pred ccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecC
Q 030045 91 GNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQN 129 (183)
Q Consensus 91 G~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~ 129 (183)
|.+ +....+.+++.|..+=.+.|.+...+.|+-..
T Consensus 148 ~rL----F~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~S 182 (227)
T KOG3177|consen 148 GRL----FNHLITIWSFKPGPNIPRTCTLDFSVSFEFKS 182 (227)
T ss_pred ccH----HHhhhheeeeccCCCCCCeEEEEEEEEEEehh
Confidence 654 55778899999963113679999999999754
No 72
>PF11979 DUF3480: Domain of unknown function (DUF3480); InterPro: IPR022557 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 350 to 362 amino acids in length. This domain is found C-terminal to PF01363 from PFAM.
Probab=37.23 E-value=2.4e+02 Score=25.25 Aligned_cols=88 Identities=22% Similarity=0.264 Sum_probs=49.0
Q ss_pred EEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEEEEecCCCC--CCchH-HHHHHHHHHHHHHHHHHhhChhh-hhc
Q 030045 88 LIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYKYEKQNENV--PDLES-KVLEMMIDIVKNIDAYIIQHEEA-RVD 163 (183)
Q Consensus 88 viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~~~--~~p~~-~~~~~~~~~~k~ie~yLl~~~~~-~~~ 163 (183)
-|+|-.|. ++.+++..-...-. ..+-.++||--|....+.. .+.+. +.-.++..+.++.=..|..+-+. ...
T Consensus 238 pIDg~sle-gv~s~ri~~~~~~~---~~~~~IRwTeVF~l~~~~~~~~~~~~~~~~~laE~IA~a~c~AL~PhL~lL~~~ 313 (356)
T PF11979_consen 238 PIDGKSLE-GVPSVRIFQGSEYK---ANGKIIRWTEVFFLQKDDDSNGPSDPSDHSRLAEQIAKACCAALCPHLKLLKEN 313 (356)
T ss_pred CCCCceec-Cceeeeecccceee---cCCeEEEEEEEEEEecCccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 35665555 56666664333333 3457899999999876643 22211 24444455555555555555454 344
Q ss_pred cccce-eeeeccccccc
Q 030045 164 DTDEV-LLVNVNSQEIE 179 (183)
Q Consensus 164 ~~~~~-~~~~~~~~~~~ 179 (183)
|-... +-|++++|+++
T Consensus 314 G~~kigLRvtld~d~Ve 330 (356)
T PF11979_consen 314 GMNKIGLRVTLDSDEVE 330 (356)
T ss_pred CCcEEEEEEEEchhHeE
Confidence 54444 44677777654
No 73
>TIGR03505 FimV_core FimV N-terminal domain. This region is found at, or about 200 amino acids from, the N-terminus of FimV from Pseudomonas aeruginosa, TspA of Neisseria meningitidis, and related proteins. Disruption of FimV blocks twitching motility from type IV pili; Semmler, et al. suggest a role for this family in peptidoglycan layer remodelling required by type IV fimbrial systems. Most but not all members of this protein family have a C-terminal region recognized by TIGR03504. In between is a highly variable, often repeat-filled region rich in the negatively charged amino acids Asp and Glu.
Probab=33.25 E-value=37 Score=23.26 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhChhhhhccccceeeeeccc
Q 030045 145 DIVKNIDAYIIQHEEARVDDTDEVLLVNVNS 175 (183)
Q Consensus 145 ~~~k~ie~yLl~~~~~~~~~~~~~~~~~~~~ 175 (183)
...+.|.+...+||++++++ |+|.
T Consensus 17 s~~q~m~ai~~aNp~AF~~~-------nin~ 40 (74)
T TIGR03505 17 SLYQMMLALYRANPDAFIGG-------NINR 40 (74)
T ss_pred CHHHHHHHHHHHCHHhHhcC-------Chhh
Confidence 45677888889999999888 7764
No 74
>KOG2936 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.76 E-value=4.5e+02 Score=22.97 Aligned_cols=97 Identities=13% Similarity=0.164 Sum_probs=50.6
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcCCCCCCccEEEEEEeecCCCcceEEEEEEeecCCc-eEE
Q 030045 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEGEWGKPGAVICWTFTRYAGNPQIVKELIEVVDDEN-YIT 84 (183)
Q Consensus 6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eGd~g~~GsiR~~~~~~~gg~~~~~kErl~~iD~~~-~~~ 84 (183)
.++.+-+++++++++|++|-+. ..+-.|.- |...++++.| |.. .+- +| .+.-++..+-+.+ -..
T Consensus 174 di~l~~tfn~~~~eLy~~fld~-~rv~~wt~----S~a~l~~~~~--g~f---~lf-~G----nVtg~~~~~e~~K~Iv~ 238 (301)
T KOG2936|consen 174 DISLSATFNCRVDELYEIFLDP-ERVKAWTR----SPAELEADPG--GKF---SLF-DG----NVTGEFLELEKNKKIVM 238 (301)
T ss_pred cceehhhcCCCHHHHHHHHhcH-HHHHHhcC----ChhhcccCCC--Cce---EEe-cc----cceeeeeeecCCCeEEE
Confidence 4566678999999999999964 45545542 2222333312 223 333 23 2222333333333 234
Q ss_pred EEEEEeccccccceEEEEEEEEEEeeeCCCCCeEEEEEEE
Q 030045 85 IFKLIEGNVLEMLYKSFCSVAKVTQKDDHEGGSLVRFTYK 124 (183)
Q Consensus 85 ~y~viEG~~l~~~~~sy~~t~~v~p~~~~~ggs~v~W~~~ 124 (183)
++++-.=+ ..+.+||++++.+. +|.|.+.....
T Consensus 239 kWrl~~Wp------~~~~atI~~~f~~~-~~~t~l~~~~k 271 (301)
T KOG2936|consen 239 KWRLKSWP------DGHDATITLTFYES-QGETKLQVKQK 271 (301)
T ss_pred EEecccCC------CCccceEEEEEecC-CCceEEEEEec
Confidence 66654322 13456777777633 55676665544
No 75
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
Probab=25.22 E-value=2e+02 Score=19.23 Aligned_cols=20 Identities=20% Similarity=0.458 Sum_probs=10.3
Q ss_pred EEEeecCC---ceEEEEEEEecc
Q 030045 73 LIEVVDDE---NYITIFKLIEGN 92 (183)
Q Consensus 73 rl~~iD~~---~~~~~y~viEG~ 92 (183)
++.+.|.+ +..+.|++++|+
T Consensus 17 ~v~a~D~D~~~n~~i~y~i~~~~ 39 (93)
T PF00028_consen 17 QVTATDPDSGPNSQITYSILGGN 39 (93)
T ss_dssp EEEEEESSTSTTSSEEEEEEETT
T ss_pred EEEEEeCCCCCCceEEEEEecCc
Confidence 34444443 555566666555
No 76
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=20.62 E-value=4.6e+02 Score=21.20 Aligned_cols=119 Identities=8% Similarity=-0.076 Sum_probs=67.0
Q ss_pred EEEEEEEEcCCHHHHHHHHhcCCCccccccCCceeeEEEEcC-CCCCCccEEEEEEeecCCC----c--ceEEEEEEeec
Q 030045 6 ELEAVIEVKASADKVHEVFSCRPHIVTSISPQSVQSCELIEG-EWGKPGAVICWTFTRYAGN----P--QIVKELIEVVD 78 (183)
Q Consensus 6 ~~~~ei~i~apa~~vw~~~~d~~~~lpk~~P~~v~s~e~~eG-d~g~~GsiR~~~~~~~gg~----~--~~~kErl~~iD 78 (183)
-+..|..++++++++|+.+.+- ....+|-| .+..++++|- |... .|-+.......+. . -.++.+ ..++
T Consensus 47 l~k~egvi~~~~e~v~~~l~~~-e~r~~Wd~-~~~~~~iie~Id~~T--~I~~~~~~~~~~~~vspRDfV~vr~~-~r~~ 121 (204)
T cd08904 47 LYRVEGIIPESPAKLIQFMYQP-EHRIKWDK-SLQVYKMLQRIDSDT--FICHTITQSFAMGSISPRDFVDLVHI-KRYE 121 (204)
T ss_pred EEEEEEEecCCHHHHHHHHhcc-chhhhhcc-cccceeeEEEeCCCc--EEEEEecccccCCcccCceEEEEEEE-EEeC
Confidence 3567889999999999998874 55689999 7888888864 2111 2222222201111 1 122221 1234
Q ss_pred CCceEEEEEEEeccccccceE------EEEEEEEEEeeeCCCCCeEEEEEEEEEecCC
Q 030045 79 DENYITIFKLIEGNVLEMLYK------SFCSVAKVTQKDDHEGGSLVRFTYKYEKQNE 130 (183)
Q Consensus 79 ~~~~~~~y~viEG~~l~~~~~------sy~~t~~v~p~~~~~ggs~v~W~~~ye~~~~ 130 (183)
+....+.+..++=+-.+ +-+ .+-+-+-+.|.++..++|.+.|-+..+++|.
T Consensus 122 ~~~~ii~~~sv~Hp~~P-p~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~ 178 (204)
T cd08904 122 GNMNIVSSVSVEYPQCP-PSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGN 178 (204)
T ss_pred CCEEEEEEEecccCCCC-CCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCC
Confidence 54444555555433322 222 2234455667522124699999999888864
Done!